Multiple sequence alignment - TraesCS5B01G429200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G429200 chr5B 100.000 3062 0 0 1 3062 604858462 604855401 0.000000e+00 5655
1 TraesCS5B01G429200 chr5B 98.016 252 5 0 52 303 604872683 604872432 3.620000e-119 438
2 TraesCS5B01G429200 chr5B 98.795 83 1 0 306 388 515818751 515818669 6.840000e-32 148
3 TraesCS5B01G429200 chr5B 98.795 83 1 0 306 388 636538011 636538093 6.840000e-32 148
4 TraesCS5B01G429200 chr5B 98.795 83 1 0 306 388 657719036 657718954 6.840000e-32 148
5 TraesCS5B01G429200 chr5A 94.459 2256 88 20 383 2612 611977550 611975306 0.000000e+00 3439
6 TraesCS5B01G429200 chr5A 94.954 218 10 1 2610 2827 611974521 611974305 1.050000e-89 340
7 TraesCS5B01G429200 chr6D 91.545 2472 102 29 385 2827 28310317 28307924 0.000000e+00 3308
8 TraesCS5B01G429200 chr6D 94.393 1605 65 16 680 2275 420225684 420224096 0.000000e+00 2442
9 TraesCS5B01G429200 chr6D 88.660 388 35 7 622 1006 13921681 13922062 5.980000e-127 464
10 TraesCS5B01G429200 chr6D 92.547 161 8 2 1286 1442 13922058 13922218 8.540000e-56 228
11 TraesCS5B01G429200 chr6D 92.063 126 8 2 2937 3062 28307739 28307616 3.140000e-40 176
12 TraesCS5B01G429200 chr6D 97.590 83 2 0 306 388 95293777 95293859 3.180000e-30 143
13 TraesCS5B01G429200 chr5D 92.004 2276 90 23 383 2608 441569367 441567134 0.000000e+00 3110
14 TraesCS5B01G429200 chr5D 91.191 1998 95 29 961 2915 490431474 490429515 0.000000e+00 2639
15 TraesCS5B01G429200 chr5D 91.626 609 25 12 383 965 490437140 490436532 0.000000e+00 819
16 TraesCS5B01G429200 chr5D 95.745 141 6 0 2659 2799 441567136 441566996 8.540000e-56 228
17 TraesCS5B01G429200 chr7D 93.714 2084 103 15 385 2450 44716896 44714823 0.000000e+00 3097
18 TraesCS5B01G429200 chr7D 94.969 318 16 0 1 318 393943002 393942685 1.640000e-137 499
19 TraesCS5B01G429200 chr7D 96.364 275 10 0 33 307 393949014 393949288 1.290000e-123 453
20 TraesCS5B01G429200 chr7D 88.629 299 21 7 2321 2607 44714828 44714531 4.860000e-93 351
21 TraesCS5B01G429200 chr6A 92.081 2235 91 31 383 2600 29577712 29579877 0.000000e+00 3068
22 TraesCS5B01G429200 chr6A 98.795 83 1 0 306 388 38150675 38150593 6.840000e-32 148
23 TraesCS5B01G429200 chr7A 94.588 1737 70 14 383 2111 47294951 47293231 0.000000e+00 2665
24 TraesCS5B01G429200 chr7A 86.772 567 38 10 2065 2612 47293235 47292687 5.650000e-167 597
25 TraesCS5B01G429200 chr4A 80.779 770 120 24 917 1679 542044242 542043494 7.360000e-161 577
26 TraesCS5B01G429200 chr4B 99.023 307 3 0 1 307 112962361 112962055 4.460000e-153 551
27 TraesCS5B01G429200 chr4B 95.753 259 11 0 49 307 112967444 112967702 4.720000e-113 418
28 TraesCS5B01G429200 chr7B 95.440 307 13 1 1 307 629502586 629502281 3.550000e-134 488
29 TraesCS5B01G429200 chr2D 94.805 308 16 0 1 308 560224035 560224342 5.940000e-132 481
30 TraesCS5B01G429200 chr2D 95.769 260 11 0 33 292 560217981 560217722 1.310000e-113 420
31 TraesCS5B01G429200 chr3A 81.219 607 70 28 1738 2318 128521175 128520587 1.670000e-122 449
32 TraesCS5B01G429200 chr1D 90.221 317 21 5 1 307 400413207 400412891 3.680000e-109 405
33 TraesCS5B01G429200 chr1D 83.654 312 19 9 1738 2041 310148264 310148551 6.510000e-67 265
34 TraesCS5B01G429200 chr3B 88.599 307 32 1 1 307 586150212 586149909 1.340000e-98 370
35 TraesCS5B01G429200 chr3B 98.795 83 1 0 306 388 68909262 68909180 6.840000e-32 148
36 TraesCS5B01G429200 chr1A 92.265 181 12 2 2026 2205 389877111 389877290 3.920000e-64 255
37 TraesCS5B01G429200 chr4D 88.038 209 19 2 917 1125 55035065 55035267 3.050000e-60 243
38 TraesCS5B01G429200 chr2B 85.526 228 19 7 383 598 138115616 138115391 3.070000e-55 226
39 TraesCS5B01G429200 chr2A 88.235 170 17 1 425 591 46323254 46323085 1.860000e-47 200
40 TraesCS5B01G429200 chr2A 96.512 86 3 0 306 391 351551865 351551780 3.180000e-30 143
41 TraesCS5B01G429200 chr1B 97.619 84 2 0 306 389 151365524 151365607 8.850000e-31 145
42 TraesCS5B01G429200 chrUn 97.590 83 2 0 306 388 284001644 284001726 3.180000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G429200 chr5B 604855401 604858462 3061 True 5655.0 5655 100.0000 1 3062 1 chr5B.!!$R2 3061
1 TraesCS5B01G429200 chr5A 611974305 611977550 3245 True 1889.5 3439 94.7065 383 2827 2 chr5A.!!$R1 2444
2 TraesCS5B01G429200 chr6D 420224096 420225684 1588 True 2442.0 2442 94.3930 680 2275 1 chr6D.!!$R1 1595
3 TraesCS5B01G429200 chr6D 28307616 28310317 2701 True 1742.0 3308 91.8040 385 3062 2 chr6D.!!$R2 2677
4 TraesCS5B01G429200 chr6D 13921681 13922218 537 False 346.0 464 90.6035 622 1442 2 chr6D.!!$F2 820
5 TraesCS5B01G429200 chr5D 490429515 490431474 1959 True 2639.0 2639 91.1910 961 2915 1 chr5D.!!$R1 1954
6 TraesCS5B01G429200 chr5D 441566996 441569367 2371 True 1669.0 3110 93.8745 383 2799 2 chr5D.!!$R3 2416
7 TraesCS5B01G429200 chr5D 490436532 490437140 608 True 819.0 819 91.6260 383 965 1 chr5D.!!$R2 582
8 TraesCS5B01G429200 chr7D 44714531 44716896 2365 True 1724.0 3097 91.1715 385 2607 2 chr7D.!!$R2 2222
9 TraesCS5B01G429200 chr6A 29577712 29579877 2165 False 3068.0 3068 92.0810 383 2600 1 chr6A.!!$F1 2217
10 TraesCS5B01G429200 chr7A 47292687 47294951 2264 True 1631.0 2665 90.6800 383 2612 2 chr7A.!!$R1 2229
11 TraesCS5B01G429200 chr4A 542043494 542044242 748 True 577.0 577 80.7790 917 1679 1 chr4A.!!$R1 762
12 TraesCS5B01G429200 chr3A 128520587 128521175 588 True 449.0 449 81.2190 1738 2318 1 chr3A.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.036306 CCGGACAAGTTTAGGCACCT 59.964 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2493 1.000052 CTGTGCATTGTGTCATTGCCA 60.0 47.619 12.02 9.33 39.18 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.355010 ATAGCAGGCAATCAGTTCCC 57.645 50.000 0.00 0.00 0.00 3.97
21 22 0.107703 TAGCAGGCAATCAGTTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
22 23 3.056313 GCAGGCAATCAGTTCCCGC 62.056 63.158 0.00 0.00 0.00 6.13
23 24 2.436646 AGGCAATCAGTTCCCGCG 60.437 61.111 0.00 0.00 0.00 6.46
24 25 3.508840 GGCAATCAGTTCCCGCGG 61.509 66.667 21.04 21.04 0.00 6.46
25 26 2.746277 GCAATCAGTTCCCGCGGT 60.746 61.111 26.12 1.14 0.00 5.68
26 27 2.332654 GCAATCAGTTCCCGCGGTT 61.333 57.895 26.12 6.76 0.00 4.44
27 28 1.501741 CAATCAGTTCCCGCGGTTG 59.498 57.895 26.12 15.99 0.00 3.77
28 29 1.674322 AATCAGTTCCCGCGGTTGG 60.674 57.895 26.12 9.25 0.00 3.77
29 30 2.119484 AATCAGTTCCCGCGGTTGGA 62.119 55.000 26.12 11.89 0.00 3.53
30 31 1.910580 ATCAGTTCCCGCGGTTGGAT 61.911 55.000 26.12 15.79 0.00 3.41
31 32 1.219664 CAGTTCCCGCGGTTGGATA 59.780 57.895 26.12 2.79 0.00 2.59
32 33 0.810031 CAGTTCCCGCGGTTGGATAG 60.810 60.000 26.12 6.69 0.00 2.08
33 34 0.974010 AGTTCCCGCGGTTGGATAGA 60.974 55.000 26.12 9.36 0.00 1.98
34 35 0.808847 GTTCCCGCGGTTGGATAGAC 60.809 60.000 26.12 5.94 0.00 2.59
35 36 0.974010 TTCCCGCGGTTGGATAGACT 60.974 55.000 26.12 0.00 0.00 3.24
36 37 0.974010 TCCCGCGGTTGGATAGACTT 60.974 55.000 26.12 0.00 0.00 3.01
37 38 0.107848 CCCGCGGTTGGATAGACTTT 60.108 55.000 26.12 0.00 0.00 2.66
38 39 1.677820 CCCGCGGTTGGATAGACTTTT 60.678 52.381 26.12 0.00 0.00 2.27
39 40 2.081462 CCGCGGTTGGATAGACTTTTT 58.919 47.619 19.50 0.00 0.00 1.94
62 63 8.682128 TTTTGCAATACTTAATAAAAGCTCCG 57.318 30.769 0.00 0.00 0.00 4.63
63 64 6.371809 TGCAATACTTAATAAAAGCTCCGG 57.628 37.500 0.00 0.00 0.00 5.14
64 65 5.298276 TGCAATACTTAATAAAAGCTCCGGG 59.702 40.000 0.00 0.00 0.00 5.73
65 66 5.278315 GCAATACTTAATAAAAGCTCCGGGG 60.278 44.000 0.00 0.00 0.00 5.73
66 67 3.292492 ACTTAATAAAAGCTCCGGGGG 57.708 47.619 1.90 0.00 0.00 5.40
67 68 2.579400 ACTTAATAAAAGCTCCGGGGGT 59.421 45.455 0.00 0.00 0.00 4.95
68 69 3.010920 ACTTAATAAAAGCTCCGGGGGTT 59.989 43.478 14.43 14.43 0.00 4.11
69 70 2.615986 AATAAAAGCTCCGGGGGTTT 57.384 45.000 25.60 25.60 38.34 3.27
70 71 2.615986 ATAAAAGCTCCGGGGGTTTT 57.384 45.000 37.96 37.96 45.06 2.43
71 72 1.913778 TAAAAGCTCCGGGGGTTTTC 58.086 50.000 39.57 7.71 43.05 2.29
72 73 0.187606 AAAAGCTCCGGGGGTTTTCT 59.812 50.000 33.16 17.01 41.17 2.52
73 74 0.539669 AAAGCTCCGGGGGTTTTCTG 60.540 55.000 25.60 0.00 33.87 3.02
74 75 2.361230 GCTCCGGGGGTTTTCTGG 60.361 66.667 1.90 0.00 0.00 3.86
75 76 2.902457 GCTCCGGGGGTTTTCTGGA 61.902 63.158 1.90 0.00 37.34 3.86
76 77 1.765074 CTCCGGGGGTTTTCTGGAA 59.235 57.895 0.00 0.00 39.01 3.53
77 78 0.111639 CTCCGGGGGTTTTCTGGAAA 59.888 55.000 0.00 0.00 39.01 3.13
78 79 0.556747 TCCGGGGGTTTTCTGGAAAA 59.443 50.000 0.00 4.61 36.79 2.29
79 80 1.148236 TCCGGGGGTTTTCTGGAAAAT 59.852 47.619 0.00 0.00 41.64 1.82
80 81 2.379226 TCCGGGGGTTTTCTGGAAAATA 59.621 45.455 0.00 0.00 41.64 1.40
81 82 3.166679 CCGGGGGTTTTCTGGAAAATAA 58.833 45.455 10.98 0.00 41.64 1.40
82 83 3.056393 CCGGGGGTTTTCTGGAAAATAAC 60.056 47.826 10.98 5.92 41.64 1.89
83 84 3.056393 CGGGGGTTTTCTGGAAAATAACC 60.056 47.826 10.98 12.51 41.64 2.85
84 85 3.056393 GGGGGTTTTCTGGAAAATAACCG 60.056 47.826 10.98 0.00 41.64 4.44
85 86 3.581755 GGGTTTTCTGGAAAATAACCGC 58.418 45.455 10.98 4.35 41.64 5.68
86 87 3.257375 GGGTTTTCTGGAAAATAACCGCT 59.743 43.478 10.98 0.00 41.64 5.52
87 88 4.460034 GGGTTTTCTGGAAAATAACCGCTA 59.540 41.667 10.98 0.00 41.64 4.26
88 89 5.047872 GGGTTTTCTGGAAAATAACCGCTAA 60.048 40.000 10.98 0.00 41.64 3.09
89 90 6.350696 GGGTTTTCTGGAAAATAACCGCTAAT 60.351 38.462 10.98 0.00 41.64 1.73
90 91 6.750501 GGTTTTCTGGAAAATAACCGCTAATC 59.249 38.462 10.98 0.00 41.64 1.75
91 92 7.362660 GGTTTTCTGGAAAATAACCGCTAATCT 60.363 37.037 10.98 0.00 41.64 2.40
92 93 6.920569 TTCTGGAAAATAACCGCTAATCTC 57.079 37.500 0.00 0.00 0.00 2.75
93 94 5.984725 TCTGGAAAATAACCGCTAATCTCA 58.015 37.500 0.00 0.00 0.00 3.27
94 95 6.591935 TCTGGAAAATAACCGCTAATCTCAT 58.408 36.000 0.00 0.00 0.00 2.90
95 96 6.706270 TCTGGAAAATAACCGCTAATCTCATC 59.294 38.462 0.00 0.00 0.00 2.92
96 97 5.763204 TGGAAAATAACCGCTAATCTCATCC 59.237 40.000 0.00 0.00 0.00 3.51
97 98 5.107065 GGAAAATAACCGCTAATCTCATCCG 60.107 44.000 0.00 0.00 0.00 4.18
98 99 4.866508 AATAACCGCTAATCTCATCCGA 57.133 40.909 0.00 0.00 0.00 4.55
99 100 2.510768 AACCGCTAATCTCATCCGAC 57.489 50.000 0.00 0.00 0.00 4.79
100 101 1.693627 ACCGCTAATCTCATCCGACT 58.306 50.000 0.00 0.00 0.00 4.18
101 102 1.609555 ACCGCTAATCTCATCCGACTC 59.390 52.381 0.00 0.00 0.00 3.36
102 103 1.609072 CCGCTAATCTCATCCGACTCA 59.391 52.381 0.00 0.00 0.00 3.41
103 104 2.034685 CCGCTAATCTCATCCGACTCAA 59.965 50.000 0.00 0.00 0.00 3.02
104 105 3.046390 CGCTAATCTCATCCGACTCAAC 58.954 50.000 0.00 0.00 0.00 3.18
105 106 3.243234 CGCTAATCTCATCCGACTCAACT 60.243 47.826 0.00 0.00 0.00 3.16
106 107 4.295051 GCTAATCTCATCCGACTCAACTC 58.705 47.826 0.00 0.00 0.00 3.01
107 108 4.037446 GCTAATCTCATCCGACTCAACTCT 59.963 45.833 0.00 0.00 0.00 3.24
108 109 5.451242 GCTAATCTCATCCGACTCAACTCTT 60.451 44.000 0.00 0.00 0.00 2.85
109 110 4.647424 ATCTCATCCGACTCAACTCTTC 57.353 45.455 0.00 0.00 0.00 2.87
110 111 2.755655 TCTCATCCGACTCAACTCTTCC 59.244 50.000 0.00 0.00 0.00 3.46
111 112 2.757868 CTCATCCGACTCAACTCTTCCT 59.242 50.000 0.00 0.00 0.00 3.36
112 113 3.948473 CTCATCCGACTCAACTCTTCCTA 59.052 47.826 0.00 0.00 0.00 2.94
113 114 3.695060 TCATCCGACTCAACTCTTCCTAC 59.305 47.826 0.00 0.00 0.00 3.18
114 115 3.150458 TCCGACTCAACTCTTCCTACA 57.850 47.619 0.00 0.00 0.00 2.74
115 116 2.818432 TCCGACTCAACTCTTCCTACAC 59.182 50.000 0.00 0.00 0.00 2.90
116 117 2.820787 CCGACTCAACTCTTCCTACACT 59.179 50.000 0.00 0.00 0.00 3.55
117 118 3.119779 CCGACTCAACTCTTCCTACACTC 60.120 52.174 0.00 0.00 0.00 3.51
118 119 3.119779 CGACTCAACTCTTCCTACACTCC 60.120 52.174 0.00 0.00 0.00 3.85
119 120 3.166679 ACTCAACTCTTCCTACACTCCC 58.833 50.000 0.00 0.00 0.00 4.30
120 121 3.165875 CTCAACTCTTCCTACACTCCCA 58.834 50.000 0.00 0.00 0.00 4.37
121 122 2.897969 TCAACTCTTCCTACACTCCCAC 59.102 50.000 0.00 0.00 0.00 4.61
122 123 1.939980 ACTCTTCCTACACTCCCACC 58.060 55.000 0.00 0.00 0.00 4.61
123 124 1.196012 CTCTTCCTACACTCCCACCC 58.804 60.000 0.00 0.00 0.00 4.61
124 125 0.490017 TCTTCCTACACTCCCACCCA 59.510 55.000 0.00 0.00 0.00 4.51
125 126 0.613777 CTTCCTACACTCCCACCCAC 59.386 60.000 0.00 0.00 0.00 4.61
126 127 0.192566 TTCCTACACTCCCACCCACT 59.807 55.000 0.00 0.00 0.00 4.00
127 128 0.544357 TCCTACACTCCCACCCACTG 60.544 60.000 0.00 0.00 0.00 3.66
128 129 0.544357 CCTACACTCCCACCCACTGA 60.544 60.000 0.00 0.00 0.00 3.41
129 130 0.608640 CTACACTCCCACCCACTGAC 59.391 60.000 0.00 0.00 0.00 3.51
130 131 0.834687 TACACTCCCACCCACTGACC 60.835 60.000 0.00 0.00 0.00 4.02
131 132 2.529389 ACTCCCACCCACTGACCC 60.529 66.667 0.00 0.00 0.00 4.46
132 133 3.706373 CTCCCACCCACTGACCCG 61.706 72.222 0.00 0.00 0.00 5.28
133 134 4.567597 TCCCACCCACTGACCCGT 62.568 66.667 0.00 0.00 0.00 5.28
134 135 4.329545 CCCACCCACTGACCCGTG 62.330 72.222 0.00 0.00 34.71 4.94
142 143 4.033776 CTGACCCGTGGGCCACAT 62.034 66.667 34.11 20.04 39.32 3.21
143 144 4.343323 TGACCCGTGGGCCACATG 62.343 66.667 34.11 25.65 39.32 3.21
153 154 2.674033 GCCACATGCCAGCTGTCA 60.674 61.111 13.81 6.39 0.00 3.58
154 155 2.697761 GCCACATGCCAGCTGTCAG 61.698 63.158 13.81 2.87 0.00 3.51
155 156 2.044555 CCACATGCCAGCTGTCAGG 61.045 63.158 13.81 10.88 0.00 3.86
165 166 4.662961 CTGTCAGGCCACGCGACA 62.663 66.667 15.93 11.20 37.33 4.35
166 167 4.228567 TGTCAGGCCACGCGACAA 62.229 61.111 15.93 0.00 36.75 3.18
167 168 3.414700 GTCAGGCCACGCGACAAG 61.415 66.667 15.93 0.00 0.00 3.16
178 179 4.643675 CGACAAGCAAATACGGCG 57.356 55.556 4.80 4.80 36.08 6.46
179 180 1.060308 CGACAAGCAAATACGGCGG 59.940 57.895 13.24 0.00 36.08 6.13
180 181 1.226295 GACAAGCAAATACGGCGGC 60.226 57.895 13.24 4.07 36.08 6.53
181 182 2.277247 CAAGCAAATACGGCGGCG 60.277 61.111 31.06 31.06 36.08 6.46
182 183 2.744709 AAGCAAATACGGCGGCGT 60.745 55.556 38.68 38.68 36.08 5.68
183 184 1.448189 AAGCAAATACGGCGGCGTA 60.448 52.632 40.22 40.22 36.08 4.42
184 185 1.698714 AAGCAAATACGGCGGCGTAC 61.699 55.000 40.89 28.88 36.08 3.67
198 199 4.112341 GTACGAGCGAGGCACCGT 62.112 66.667 11.44 11.44 41.20 4.83
199 200 2.436469 TACGAGCGAGGCACCGTA 60.436 61.111 9.87 9.87 39.67 4.02
200 201 1.820906 TACGAGCGAGGCACCGTAT 60.821 57.895 9.87 0.00 39.67 3.06
201 202 0.532640 TACGAGCGAGGCACCGTATA 60.533 55.000 9.87 0.00 39.67 1.47
202 203 1.170919 ACGAGCGAGGCACCGTATAT 61.171 55.000 0.00 0.00 38.02 0.86
203 204 0.729478 CGAGCGAGGCACCGTATATG 60.729 60.000 0.00 0.00 0.00 1.78
204 205 0.596577 GAGCGAGGCACCGTATATGA 59.403 55.000 0.00 0.00 0.00 2.15
205 206 1.000607 GAGCGAGGCACCGTATATGAA 60.001 52.381 0.00 0.00 0.00 2.57
206 207 1.137513 GCGAGGCACCGTATATGAAC 58.862 55.000 0.00 0.00 0.00 3.18
207 208 1.779569 CGAGGCACCGTATATGAACC 58.220 55.000 0.00 0.00 0.00 3.62
208 209 1.067974 CGAGGCACCGTATATGAACCA 59.932 52.381 0.00 0.00 0.00 3.67
209 210 2.482316 CGAGGCACCGTATATGAACCAA 60.482 50.000 0.00 0.00 0.00 3.67
210 211 3.537580 GAGGCACCGTATATGAACCAAA 58.462 45.455 0.00 0.00 0.00 3.28
211 212 4.134563 GAGGCACCGTATATGAACCAAAT 58.865 43.478 0.00 0.00 0.00 2.32
212 213 3.882888 AGGCACCGTATATGAACCAAATG 59.117 43.478 0.00 0.00 0.00 2.32
213 214 3.004315 GGCACCGTATATGAACCAAATGG 59.996 47.826 0.00 0.00 42.17 3.16
214 215 3.880490 GCACCGTATATGAACCAAATGGA 59.120 43.478 6.42 0.00 38.94 3.41
215 216 4.261031 GCACCGTATATGAACCAAATGGAC 60.261 45.833 6.42 0.78 38.94 4.02
216 217 4.878971 CACCGTATATGAACCAAATGGACA 59.121 41.667 6.42 6.51 38.94 4.02
217 218 5.355630 CACCGTATATGAACCAAATGGACAA 59.644 40.000 6.42 0.00 38.94 3.18
218 219 5.588648 ACCGTATATGAACCAAATGGACAAG 59.411 40.000 6.42 0.00 38.94 3.16
219 220 5.588648 CCGTATATGAACCAAATGGACAAGT 59.411 40.000 6.42 2.84 38.94 3.16
220 221 6.094881 CCGTATATGAACCAAATGGACAAGTT 59.905 38.462 6.42 0.00 38.94 2.66
221 222 6.966632 CGTATATGAACCAAATGGACAAGTTG 59.033 38.462 6.42 0.00 38.94 3.16
222 223 6.916360 ATATGAACCAAATGGACAAGTTGT 57.084 33.333 8.61 8.61 38.94 3.32
223 224 4.383850 TGAACCAAATGGACAAGTTGTG 57.616 40.909 14.57 0.00 38.94 3.33
224 225 3.131933 TGAACCAAATGGACAAGTTGTGG 59.868 43.478 14.57 9.74 38.94 4.17
225 226 1.412343 ACCAAATGGACAAGTTGTGGC 59.588 47.619 14.57 0.00 38.94 5.01
226 227 1.411977 CCAAATGGACAAGTTGTGGCA 59.588 47.619 14.57 0.00 36.72 4.92
227 228 2.472816 CAAATGGACAAGTTGTGGCAC 58.527 47.619 14.57 11.55 36.72 5.01
228 229 1.039856 AATGGACAAGTTGTGGCACC 58.960 50.000 14.57 8.87 36.72 5.01
229 230 0.106268 ATGGACAAGTTGTGGCACCA 60.106 50.000 14.57 14.55 36.72 4.17
230 231 0.751277 TGGACAAGTTGTGGCACCAG 60.751 55.000 14.57 2.85 36.72 4.00
231 232 0.751643 GGACAAGTTGTGGCACCAGT 60.752 55.000 14.57 3.84 36.72 4.00
232 233 1.102978 GACAAGTTGTGGCACCAGTT 58.897 50.000 14.57 10.70 34.13 3.16
233 234 1.476488 GACAAGTTGTGGCACCAGTTT 59.524 47.619 14.57 4.67 34.13 2.66
234 235 1.899142 ACAAGTTGTGGCACCAGTTTT 59.101 42.857 16.26 3.54 0.00 2.43
235 236 2.301583 ACAAGTTGTGGCACCAGTTTTT 59.698 40.909 16.26 0.00 0.00 1.94
236 237 2.671130 AGTTGTGGCACCAGTTTTTG 57.329 45.000 16.26 0.00 0.00 2.44
237 238 2.175202 AGTTGTGGCACCAGTTTTTGA 58.825 42.857 16.26 0.00 0.00 2.69
238 239 2.094234 AGTTGTGGCACCAGTTTTTGAC 60.094 45.455 16.26 0.35 0.00 3.18
239 240 1.550327 TGTGGCACCAGTTTTTGACA 58.450 45.000 16.26 0.00 0.00 3.58
240 241 2.106566 TGTGGCACCAGTTTTTGACAT 58.893 42.857 16.26 0.00 31.95 3.06
241 242 2.499289 TGTGGCACCAGTTTTTGACATT 59.501 40.909 16.26 0.00 31.95 2.71
242 243 3.055530 TGTGGCACCAGTTTTTGACATTT 60.056 39.130 16.26 0.00 31.95 2.32
243 244 3.938334 GTGGCACCAGTTTTTGACATTTT 59.062 39.130 6.29 0.00 31.95 1.82
244 245 3.937706 TGGCACCAGTTTTTGACATTTTG 59.062 39.130 0.00 0.00 0.00 2.44
245 246 3.242706 GGCACCAGTTTTTGACATTTTGC 60.243 43.478 0.00 0.00 0.00 3.68
246 247 3.373439 GCACCAGTTTTTGACATTTTGCA 59.627 39.130 0.00 0.00 0.00 4.08
247 248 4.142730 GCACCAGTTTTTGACATTTTGCAA 60.143 37.500 0.00 0.00 0.00 4.08
248 249 5.561993 CACCAGTTTTTGACATTTTGCAAG 58.438 37.500 0.00 0.00 0.00 4.01
249 250 5.122082 CACCAGTTTTTGACATTTTGCAAGT 59.878 36.000 0.00 0.00 0.00 3.16
250 251 5.704978 ACCAGTTTTTGACATTTTGCAAGTT 59.295 32.000 0.00 0.00 0.00 2.66
251 252 6.206438 ACCAGTTTTTGACATTTTGCAAGTTT 59.794 30.769 0.00 0.00 0.00 2.66
252 253 7.389053 ACCAGTTTTTGACATTTTGCAAGTTTA 59.611 29.630 0.00 0.00 0.00 2.01
253 254 7.904461 CCAGTTTTTGACATTTTGCAAGTTTAG 59.096 33.333 0.00 0.00 0.00 1.85
254 255 7.904461 CAGTTTTTGACATTTTGCAAGTTTAGG 59.096 33.333 0.00 0.00 0.00 2.69
255 256 5.982465 TTTGACATTTTGCAAGTTTAGGC 57.018 34.783 0.00 0.00 0.00 3.93
256 257 4.662468 TGACATTTTGCAAGTTTAGGCA 57.338 36.364 0.00 0.00 38.46 4.75
257 258 4.367450 TGACATTTTGCAAGTTTAGGCAC 58.633 39.130 0.00 0.00 40.23 5.01
258 259 4.099266 TGACATTTTGCAAGTTTAGGCACT 59.901 37.500 0.00 0.00 40.23 4.40
259 260 5.300539 TGACATTTTGCAAGTTTAGGCACTA 59.699 36.000 0.00 0.00 40.23 2.74
273 274 2.431942 ACTAAAGTGACCGCGCCG 60.432 61.111 0.00 0.00 0.00 6.46
284 285 2.776072 CGCGCCGGACAAGTTTAG 59.224 61.111 5.05 0.00 0.00 1.85
285 286 2.736682 CGCGCCGGACAAGTTTAGG 61.737 63.158 5.05 0.00 0.00 2.69
286 287 3.035576 GCGCCGGACAAGTTTAGGC 62.036 63.158 5.05 0.00 44.00 3.93
287 288 4.390048 GCCGGACAAGTTTAGGCA 57.610 55.556 5.05 0.00 46.48 4.75
288 289 1.873863 GCCGGACAAGTTTAGGCAC 59.126 57.895 5.05 0.00 46.48 5.01
289 290 1.583495 GCCGGACAAGTTTAGGCACC 61.583 60.000 5.05 0.00 46.48 5.01
290 291 0.036306 CCGGACAAGTTTAGGCACCT 59.964 55.000 0.00 0.00 0.00 4.00
291 292 1.439679 CGGACAAGTTTAGGCACCTC 58.560 55.000 0.00 0.00 0.00 3.85
292 293 1.002087 CGGACAAGTTTAGGCACCTCT 59.998 52.381 0.00 0.00 0.00 3.69
293 294 2.427506 GGACAAGTTTAGGCACCTCTG 58.572 52.381 0.00 0.00 0.00 3.35
294 295 2.427506 GACAAGTTTAGGCACCTCTGG 58.572 52.381 0.00 0.00 0.00 3.86
295 296 1.774856 ACAAGTTTAGGCACCTCTGGT 59.225 47.619 0.00 0.00 35.62 4.00
308 309 3.113043 ACCTCTGGTGTATTTACCTCCC 58.887 50.000 0.00 0.00 41.43 4.30
309 310 3.246387 ACCTCTGGTGTATTTACCTCCCT 60.246 47.826 0.00 0.00 41.43 4.20
310 311 4.015918 ACCTCTGGTGTATTTACCTCCCTA 60.016 45.833 0.00 0.00 41.43 3.53
311 312 4.344390 CCTCTGGTGTATTTACCTCCCTAC 59.656 50.000 0.00 0.00 41.43 3.18
312 313 4.950361 TCTGGTGTATTTACCTCCCTACA 58.050 43.478 0.00 0.00 41.43 2.74
313 314 5.535029 TCTGGTGTATTTACCTCCCTACAT 58.465 41.667 0.00 0.00 41.43 2.29
314 315 5.968167 TCTGGTGTATTTACCTCCCTACATT 59.032 40.000 0.00 0.00 41.43 2.71
315 316 6.445786 TCTGGTGTATTTACCTCCCTACATTT 59.554 38.462 0.00 0.00 41.43 2.32
316 317 6.655930 TGGTGTATTTACCTCCCTACATTTC 58.344 40.000 0.00 0.00 41.43 2.17
317 318 6.445786 TGGTGTATTTACCTCCCTACATTTCT 59.554 38.462 0.00 0.00 41.43 2.52
318 319 6.766467 GGTGTATTTACCTCCCTACATTTCTG 59.234 42.308 0.00 0.00 37.74 3.02
319 320 7.336396 GTGTATTTACCTCCCTACATTTCTGT 58.664 38.462 0.00 0.00 39.49 3.41
320 321 8.480501 GTGTATTTACCTCCCTACATTTCTGTA 58.519 37.037 0.00 0.00 36.79 2.74
321 322 9.049050 TGTATTTACCTCCCTACATTTCTGTAA 57.951 33.333 0.00 0.00 37.41 2.41
322 323 9.543783 GTATTTACCTCCCTACATTTCTGTAAG 57.456 37.037 0.00 0.00 37.41 2.34
323 324 7.801893 TTTACCTCCCTACATTTCTGTAAGA 57.198 36.000 0.00 0.00 44.68 2.10
337 338 4.620723 TCTGTAAGAGGCTATTTCCAGGA 58.379 43.478 16.33 0.00 38.67 3.86
338 339 4.406003 TCTGTAAGAGGCTATTTCCAGGAC 59.594 45.833 16.33 3.23 38.67 3.85
339 340 4.362677 TGTAAGAGGCTATTTCCAGGACT 58.637 43.478 0.00 0.00 0.00 3.85
340 341 4.783227 TGTAAGAGGCTATTTCCAGGACTT 59.217 41.667 0.00 0.00 0.00 3.01
341 342 3.922171 AGAGGCTATTTCCAGGACTTG 57.078 47.619 0.00 0.00 0.00 3.16
342 343 3.454858 AGAGGCTATTTCCAGGACTTGA 58.545 45.455 0.00 0.00 0.00 3.02
343 344 3.846588 AGAGGCTATTTCCAGGACTTGAA 59.153 43.478 0.00 0.00 0.00 2.69
344 345 3.942115 GAGGCTATTTCCAGGACTTGAAC 59.058 47.826 0.00 0.00 0.00 3.18
345 346 3.017442 GGCTATTTCCAGGACTTGAACC 58.983 50.000 0.00 0.00 0.00 3.62
346 347 3.017442 GCTATTTCCAGGACTTGAACCC 58.983 50.000 0.00 0.00 0.00 4.11
347 348 2.200373 ATTTCCAGGACTTGAACCCG 57.800 50.000 0.00 0.00 0.00 5.28
348 349 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
349 350 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
350 351 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
351 352 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
352 353 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
353 354 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
354 355 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
355 356 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
356 357 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
357 358 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
368 369 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
369 370 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
370 371 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
371 372 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
372 373 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
373 374 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
374 375 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
375 376 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
376 377 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
377 378 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
378 379 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
379 380 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
380 381 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
381 382 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
394 395 2.163818 TTACCACTGTGCCTTTCTCG 57.836 50.000 1.29 0.00 0.00 4.04
532 539 3.755112 TGATTGGAGTAACCGTTGACA 57.245 42.857 0.00 0.00 42.61 3.58
654 677 1.805945 GCTATTCCTATCGCCGCGG 60.806 63.158 24.05 24.05 0.00 6.46
736 762 5.975693 AAGAAAGCCGGTTAATCATTCAA 57.024 34.783 1.90 0.00 0.00 2.69
801 834 4.274950 TCAGTTTTAAAAGCTGAACCCTCG 59.725 41.667 20.96 3.95 36.46 4.63
837 870 0.693049 AACAGGGGCTGTGGAGTAAG 59.307 55.000 0.00 0.00 44.62 2.34
854 890 6.116126 GGAGTAAGTGTAGCTGGATCAAATT 58.884 40.000 0.00 0.00 0.00 1.82
991 1055 6.092259 ACAGGTTTTCTGAATATACTCGCAAC 59.908 38.462 0.00 0.00 46.18 4.17
1032 1096 0.670546 GCTACACGCCTCTGCTGAAA 60.671 55.000 0.00 0.00 34.43 2.69
1418 1521 3.117776 TCCTACTTGCATCATGCCTGATT 60.118 43.478 7.30 0.00 44.23 2.57
1612 1721 6.259167 TGTGTTGTTACGTTGAGCTCTAAATT 59.741 34.615 16.19 0.00 0.00 1.82
1841 1954 9.886132 ACTATATGGTTTAGTACTTTGTTCCTG 57.114 33.333 0.00 0.00 0.00 3.86
2070 2234 7.517417 CGACCTTCTCTGTTATGATATTGTTGC 60.517 40.741 0.00 0.00 0.00 4.17
2183 2386 0.247460 TTCTGTGGATGCTCCTCGTG 59.753 55.000 4.21 0.00 37.46 4.35
2309 2515 1.705256 CAATGACACAATGCACAGGC 58.295 50.000 0.00 0.00 41.68 4.85
2405 2752 1.030457 ATCGGTACCTGGTGTCGATC 58.970 55.000 23.72 1.25 36.01 3.69
2415 2762 1.550524 TGGTGTCGATCTGGAGGAAAG 59.449 52.381 0.00 0.00 0.00 2.62
2483 2848 1.446907 GCCTCAGACATGACACTTGG 58.553 55.000 0.00 2.44 0.00 3.61
2493 2858 4.728772 ACATGACACTTGGGAATTCAGAA 58.271 39.130 7.93 0.00 0.00 3.02
2494 2859 4.520492 ACATGACACTTGGGAATTCAGAAC 59.480 41.667 7.93 0.00 0.00 3.01
2543 2908 5.671493 TCCTATCTTTGTGCTAGCTAAACC 58.329 41.667 17.23 0.00 0.00 3.27
2572 2963 7.208080 ACTTAAGTTGTAGTGGTGTAGTCAAG 58.792 38.462 1.12 0.00 0.00 3.02
2576 2968 6.510536 AGTTGTAGTGGTGTAGTCAAGTTAC 58.489 40.000 0.00 0.00 0.00 2.50
2638 3817 6.095377 GGTCTTGCTTGAATCTTTGTTATGG 58.905 40.000 0.00 0.00 0.00 2.74
2677 3856 2.522836 TGCATTGGCGTGTCAATTTT 57.477 40.000 0.00 0.00 45.35 1.82
2757 3936 8.515414 TCGATGATCGATCATATAGACAGTTTT 58.485 33.333 34.72 14.04 46.84 2.43
2799 3978 2.508716 ACCTCATGATCTGATGGCTGTT 59.491 45.455 0.00 0.00 32.10 3.16
2800 3979 2.879026 CCTCATGATCTGATGGCTGTTG 59.121 50.000 0.00 0.00 32.10 3.33
2891 4097 2.084546 CATTCAACCGGGAAGAAGGAC 58.915 52.381 6.32 0.00 0.00 3.85
2912 4144 2.098831 GCGTTCAACTCCGGGCTAC 61.099 63.158 0.00 0.00 0.00 3.58
2963 4217 2.156891 CGGTCGTCAAATCAAATCACGT 59.843 45.455 0.00 0.00 0.00 4.49
2966 4220 4.319190 GGTCGTCAAATCAAATCACGTCAA 60.319 41.667 0.00 0.00 0.00 3.18
2969 4223 3.914364 GTCAAATCAAATCACGTCAAGCC 59.086 43.478 0.00 0.00 0.00 4.35
3000 4254 3.056328 GCTTTGCCCTCACCGTCC 61.056 66.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224281 CGGGAACTGATTGCCTGCTATA 60.224 50.000 0.00 0.00 44.01 1.31
1 2 1.475751 CGGGAACTGATTGCCTGCTAT 60.476 52.381 0.00 0.00 44.01 2.97
2 3 0.107703 CGGGAACTGATTGCCTGCTA 60.108 55.000 0.00 0.00 44.01 3.49
3 4 1.377725 CGGGAACTGATTGCCTGCT 60.378 57.895 0.00 0.00 44.01 4.24
4 5 3.056313 GCGGGAACTGATTGCCTGC 62.056 63.158 0.00 0.00 44.01 4.85
5 6 2.753966 CGCGGGAACTGATTGCCTG 61.754 63.158 0.00 0.00 44.01 4.85
6 7 2.436646 CGCGGGAACTGATTGCCT 60.437 61.111 0.00 0.00 44.01 4.75
7 8 3.508840 CCGCGGGAACTGATTGCC 61.509 66.667 20.10 0.00 42.79 4.52
8 9 2.332654 AACCGCGGGAACTGATTGC 61.333 57.895 31.76 0.00 36.31 3.56
9 10 1.501741 CAACCGCGGGAACTGATTG 59.498 57.895 31.76 18.64 36.31 2.67
10 11 1.674322 CCAACCGCGGGAACTGATT 60.674 57.895 31.76 9.90 36.31 2.57
11 12 1.910580 ATCCAACCGCGGGAACTGAT 61.911 55.000 31.76 19.43 38.09 2.90
12 13 1.259142 TATCCAACCGCGGGAACTGA 61.259 55.000 31.76 18.01 38.09 3.41
13 14 0.810031 CTATCCAACCGCGGGAACTG 60.810 60.000 31.76 19.64 38.09 3.16
14 15 0.974010 TCTATCCAACCGCGGGAACT 60.974 55.000 31.76 12.31 38.09 3.01
15 16 0.808847 GTCTATCCAACCGCGGGAAC 60.809 60.000 31.76 8.69 38.09 3.62
16 17 0.974010 AGTCTATCCAACCGCGGGAA 60.974 55.000 31.76 11.97 38.09 3.97
17 18 0.974010 AAGTCTATCCAACCGCGGGA 60.974 55.000 31.76 18.04 39.14 5.14
18 19 0.107848 AAAGTCTATCCAACCGCGGG 60.108 55.000 31.76 12.82 0.00 6.13
19 20 1.734163 AAAAGTCTATCCAACCGCGG 58.266 50.000 26.86 26.86 0.00 6.46
36 37 9.134734 CGGAGCTTTTATTAAGTATTGCAAAAA 57.865 29.630 1.71 0.00 0.00 1.94
37 38 7.757624 CCGGAGCTTTTATTAAGTATTGCAAAA 59.242 33.333 1.71 0.00 0.00 2.44
38 39 7.254852 CCGGAGCTTTTATTAAGTATTGCAAA 58.745 34.615 1.71 0.00 0.00 3.68
39 40 6.183360 CCCGGAGCTTTTATTAAGTATTGCAA 60.183 38.462 0.73 0.00 0.00 4.08
40 41 5.298276 CCCGGAGCTTTTATTAAGTATTGCA 59.702 40.000 0.73 0.00 0.00 4.08
41 42 5.278315 CCCCGGAGCTTTTATTAAGTATTGC 60.278 44.000 0.73 0.00 0.00 3.56
42 43 5.240844 CCCCCGGAGCTTTTATTAAGTATTG 59.759 44.000 0.73 0.00 0.00 1.90
43 44 5.103813 ACCCCCGGAGCTTTTATTAAGTATT 60.104 40.000 0.73 0.00 0.00 1.89
44 45 4.414514 ACCCCCGGAGCTTTTATTAAGTAT 59.585 41.667 0.73 0.00 0.00 2.12
45 46 3.781965 ACCCCCGGAGCTTTTATTAAGTA 59.218 43.478 0.73 0.00 0.00 2.24
46 47 2.579400 ACCCCCGGAGCTTTTATTAAGT 59.421 45.455 0.73 0.00 0.00 2.24
47 48 3.292492 ACCCCCGGAGCTTTTATTAAG 57.708 47.619 0.73 0.00 0.00 1.85
48 49 3.743092 AACCCCCGGAGCTTTTATTAA 57.257 42.857 0.73 0.00 0.00 1.40
49 50 3.743092 AAACCCCCGGAGCTTTTATTA 57.257 42.857 0.73 0.00 0.00 0.98
50 51 2.615986 AAACCCCCGGAGCTTTTATT 57.384 45.000 0.73 0.00 0.00 1.40
51 52 2.042569 AGAAAACCCCCGGAGCTTTTAT 59.957 45.455 0.73 0.00 0.00 1.40
52 53 1.426215 AGAAAACCCCCGGAGCTTTTA 59.574 47.619 0.73 0.00 0.00 1.52
53 54 0.187606 AGAAAACCCCCGGAGCTTTT 59.812 50.000 0.73 2.55 0.00 2.27
54 55 0.539669 CAGAAAACCCCCGGAGCTTT 60.540 55.000 0.73 0.00 0.00 3.51
55 56 1.074951 CAGAAAACCCCCGGAGCTT 59.925 57.895 0.73 0.00 0.00 3.74
56 57 2.757077 CAGAAAACCCCCGGAGCT 59.243 61.111 0.73 0.00 0.00 4.09
57 58 2.361230 CCAGAAAACCCCCGGAGC 60.361 66.667 0.73 0.00 0.00 4.70
58 59 0.111639 TTTCCAGAAAACCCCCGGAG 59.888 55.000 0.73 0.00 0.00 4.63
59 60 0.556747 TTTTCCAGAAAACCCCCGGA 59.443 50.000 0.73 0.00 35.57 5.14
60 61 1.639722 ATTTTCCAGAAAACCCCCGG 58.360 50.000 7.68 0.00 42.32 5.73
61 62 3.056393 GGTTATTTTCCAGAAAACCCCCG 60.056 47.826 7.68 0.00 42.32 5.73
62 63 3.056393 CGGTTATTTTCCAGAAAACCCCC 60.056 47.826 7.68 6.97 42.32 5.40
63 64 3.615592 GCGGTTATTTTCCAGAAAACCCC 60.616 47.826 7.68 7.27 42.32 4.95
64 65 3.257375 AGCGGTTATTTTCCAGAAAACCC 59.743 43.478 7.68 7.57 42.32 4.11
65 66 4.514781 AGCGGTTATTTTCCAGAAAACC 57.485 40.909 7.68 5.28 42.32 3.27
66 67 7.535997 AGATTAGCGGTTATTTTCCAGAAAAC 58.464 34.615 7.68 0.00 42.32 2.43
67 68 7.392113 TGAGATTAGCGGTTATTTTCCAGAAAA 59.608 33.333 7.94 7.94 43.48 2.29
68 69 6.882140 TGAGATTAGCGGTTATTTTCCAGAAA 59.118 34.615 0.00 0.00 0.00 2.52
69 70 6.411376 TGAGATTAGCGGTTATTTTCCAGAA 58.589 36.000 0.00 0.00 0.00 3.02
70 71 5.984725 TGAGATTAGCGGTTATTTTCCAGA 58.015 37.500 0.00 0.00 0.00 3.86
71 72 6.073003 GGATGAGATTAGCGGTTATTTTCCAG 60.073 42.308 0.00 0.00 0.00 3.86
72 73 5.763204 GGATGAGATTAGCGGTTATTTTCCA 59.237 40.000 0.00 0.00 0.00 3.53
73 74 5.107065 CGGATGAGATTAGCGGTTATTTTCC 60.107 44.000 0.00 0.00 0.00 3.13
74 75 5.694910 TCGGATGAGATTAGCGGTTATTTTC 59.305 40.000 0.00 0.00 0.00 2.29
75 76 5.465724 GTCGGATGAGATTAGCGGTTATTTT 59.534 40.000 0.00 0.00 0.00 1.82
76 77 4.989168 GTCGGATGAGATTAGCGGTTATTT 59.011 41.667 0.00 0.00 0.00 1.40
77 78 4.281182 AGTCGGATGAGATTAGCGGTTATT 59.719 41.667 0.00 0.00 0.00 1.40
78 79 3.827302 AGTCGGATGAGATTAGCGGTTAT 59.173 43.478 0.00 0.00 0.00 1.89
79 80 3.220110 AGTCGGATGAGATTAGCGGTTA 58.780 45.455 0.00 0.00 0.00 2.85
80 81 2.032620 AGTCGGATGAGATTAGCGGTT 58.967 47.619 0.00 0.00 0.00 4.44
81 82 1.609555 GAGTCGGATGAGATTAGCGGT 59.390 52.381 0.00 0.00 0.00 5.68
82 83 1.609072 TGAGTCGGATGAGATTAGCGG 59.391 52.381 0.00 0.00 0.00 5.52
83 84 3.046390 GTTGAGTCGGATGAGATTAGCG 58.954 50.000 0.00 0.00 0.00 4.26
84 85 4.037446 AGAGTTGAGTCGGATGAGATTAGC 59.963 45.833 0.00 0.00 0.00 3.09
85 86 5.766150 AGAGTTGAGTCGGATGAGATTAG 57.234 43.478 0.00 0.00 0.00 1.73
86 87 5.067936 GGAAGAGTTGAGTCGGATGAGATTA 59.932 44.000 0.00 0.00 0.00 1.75
87 88 4.142049 GGAAGAGTTGAGTCGGATGAGATT 60.142 45.833 0.00 0.00 0.00 2.40
88 89 3.383185 GGAAGAGTTGAGTCGGATGAGAT 59.617 47.826 0.00 0.00 0.00 2.75
89 90 2.755655 GGAAGAGTTGAGTCGGATGAGA 59.244 50.000 0.00 0.00 0.00 3.27
90 91 2.757868 AGGAAGAGTTGAGTCGGATGAG 59.242 50.000 0.00 0.00 0.00 2.90
91 92 2.808919 AGGAAGAGTTGAGTCGGATGA 58.191 47.619 0.00 0.00 0.00 2.92
92 93 3.444034 TGTAGGAAGAGTTGAGTCGGATG 59.556 47.826 0.00 0.00 0.00 3.51
93 94 3.444388 GTGTAGGAAGAGTTGAGTCGGAT 59.556 47.826 0.00 0.00 0.00 4.18
94 95 2.818432 GTGTAGGAAGAGTTGAGTCGGA 59.182 50.000 0.00 0.00 0.00 4.55
95 96 2.820787 AGTGTAGGAAGAGTTGAGTCGG 59.179 50.000 0.00 0.00 0.00 4.79
96 97 3.119779 GGAGTGTAGGAAGAGTTGAGTCG 60.120 52.174 0.00 0.00 0.00 4.18
97 98 3.193903 GGGAGTGTAGGAAGAGTTGAGTC 59.806 52.174 0.00 0.00 0.00 3.36
98 99 3.166679 GGGAGTGTAGGAAGAGTTGAGT 58.833 50.000 0.00 0.00 0.00 3.41
99 100 3.056465 GTGGGAGTGTAGGAAGAGTTGAG 60.056 52.174 0.00 0.00 0.00 3.02
100 101 2.897969 GTGGGAGTGTAGGAAGAGTTGA 59.102 50.000 0.00 0.00 0.00 3.18
101 102 2.028020 GGTGGGAGTGTAGGAAGAGTTG 60.028 54.545 0.00 0.00 0.00 3.16
102 103 2.258109 GGTGGGAGTGTAGGAAGAGTT 58.742 52.381 0.00 0.00 0.00 3.01
103 104 1.552719 GGGTGGGAGTGTAGGAAGAGT 60.553 57.143 0.00 0.00 0.00 3.24
104 105 1.196012 GGGTGGGAGTGTAGGAAGAG 58.804 60.000 0.00 0.00 0.00 2.85
105 106 0.490017 TGGGTGGGAGTGTAGGAAGA 59.510 55.000 0.00 0.00 0.00 2.87
106 107 0.613777 GTGGGTGGGAGTGTAGGAAG 59.386 60.000 0.00 0.00 0.00 3.46
107 108 0.192566 AGTGGGTGGGAGTGTAGGAA 59.807 55.000 0.00 0.00 0.00 3.36
108 109 0.544357 CAGTGGGTGGGAGTGTAGGA 60.544 60.000 0.00 0.00 0.00 2.94
109 110 0.544357 TCAGTGGGTGGGAGTGTAGG 60.544 60.000 0.00 0.00 0.00 3.18
110 111 0.608640 GTCAGTGGGTGGGAGTGTAG 59.391 60.000 0.00 0.00 0.00 2.74
111 112 0.834687 GGTCAGTGGGTGGGAGTGTA 60.835 60.000 0.00 0.00 0.00 2.90
112 113 2.147387 GGTCAGTGGGTGGGAGTGT 61.147 63.158 0.00 0.00 0.00 3.55
113 114 2.750350 GGTCAGTGGGTGGGAGTG 59.250 66.667 0.00 0.00 0.00 3.51
114 115 2.529389 GGGTCAGTGGGTGGGAGT 60.529 66.667 0.00 0.00 0.00 3.85
115 116 3.706373 CGGGTCAGTGGGTGGGAG 61.706 72.222 0.00 0.00 0.00 4.30
116 117 4.567597 ACGGGTCAGTGGGTGGGA 62.568 66.667 0.00 0.00 0.00 4.37
117 118 4.329545 CACGGGTCAGTGGGTGGG 62.330 72.222 0.00 0.00 38.40 4.61
136 137 2.674033 TGACAGCTGGCATGTGGC 60.674 61.111 21.20 0.00 43.74 5.01
137 138 2.044555 CCTGACAGCTGGCATGTGG 61.045 63.158 25.67 17.88 29.25 4.17
138 139 3.587095 CCTGACAGCTGGCATGTG 58.413 61.111 25.67 11.96 29.25 3.21
148 149 4.662961 TGTCGCGTGGCCTGACAG 62.663 66.667 5.77 0.00 37.69 3.51
149 150 4.228567 TTGTCGCGTGGCCTGACA 62.229 61.111 5.77 10.36 40.62 3.58
150 151 3.414700 CTTGTCGCGTGGCCTGAC 61.415 66.667 5.77 7.66 0.00 3.51
153 154 4.927782 TTGCTTGTCGCGTGGCCT 62.928 61.111 5.77 0.00 43.27 5.19
154 155 1.917782 TATTTGCTTGTCGCGTGGCC 61.918 55.000 5.77 0.00 43.27 5.36
155 156 0.793104 GTATTTGCTTGTCGCGTGGC 60.793 55.000 5.77 7.19 43.27 5.01
156 157 0.518355 CGTATTTGCTTGTCGCGTGG 60.518 55.000 5.77 0.00 43.27 4.94
157 158 0.518355 CCGTATTTGCTTGTCGCGTG 60.518 55.000 5.77 0.00 43.27 5.34
158 159 1.785321 CCGTATTTGCTTGTCGCGT 59.215 52.632 5.77 0.00 43.27 6.01
159 160 1.580132 GCCGTATTTGCTTGTCGCG 60.580 57.895 0.00 0.00 43.27 5.87
160 161 1.580132 CGCCGTATTTGCTTGTCGC 60.580 57.895 0.00 0.00 39.77 5.19
161 162 1.060308 CCGCCGTATTTGCTTGTCG 59.940 57.895 0.00 0.00 0.00 4.35
162 163 1.226295 GCCGCCGTATTTGCTTGTC 60.226 57.895 0.00 0.00 0.00 3.18
163 164 2.874751 GCCGCCGTATTTGCTTGT 59.125 55.556 0.00 0.00 0.00 3.16
164 165 2.277247 CGCCGCCGTATTTGCTTG 60.277 61.111 0.00 0.00 0.00 4.01
181 182 2.056481 ATACGGTGCCTCGCTCGTAC 62.056 60.000 12.30 0.00 41.00 3.67
182 183 0.532640 TATACGGTGCCTCGCTCGTA 60.533 55.000 12.39 12.39 41.74 3.43
183 184 1.170919 ATATACGGTGCCTCGCTCGT 61.171 55.000 9.59 9.59 40.44 4.18
184 185 0.729478 CATATACGGTGCCTCGCTCG 60.729 60.000 0.00 0.00 33.90 5.03
185 186 0.596577 TCATATACGGTGCCTCGCTC 59.403 55.000 0.00 0.00 0.00 5.03
186 187 1.037493 TTCATATACGGTGCCTCGCT 58.963 50.000 0.00 0.00 0.00 4.93
187 188 1.137513 GTTCATATACGGTGCCTCGC 58.862 55.000 0.00 0.00 0.00 5.03
188 189 1.067974 TGGTTCATATACGGTGCCTCG 59.932 52.381 0.00 0.00 0.00 4.63
189 190 2.902705 TGGTTCATATACGGTGCCTC 57.097 50.000 0.00 0.00 0.00 4.70
190 191 3.637911 TTTGGTTCATATACGGTGCCT 57.362 42.857 0.00 0.00 0.00 4.75
191 192 3.004315 CCATTTGGTTCATATACGGTGCC 59.996 47.826 0.00 0.00 0.00 5.01
192 193 3.880490 TCCATTTGGTTCATATACGGTGC 59.120 43.478 0.00 0.00 36.34 5.01
193 194 4.878971 TGTCCATTTGGTTCATATACGGTG 59.121 41.667 0.00 0.00 36.34 4.94
194 195 5.105567 TGTCCATTTGGTTCATATACGGT 57.894 39.130 0.00 0.00 36.34 4.83
195 196 5.588648 ACTTGTCCATTTGGTTCATATACGG 59.411 40.000 0.00 0.00 36.34 4.02
196 197 6.677781 ACTTGTCCATTTGGTTCATATACG 57.322 37.500 0.00 0.00 36.34 3.06
197 198 7.754924 CACAACTTGTCCATTTGGTTCATATAC 59.245 37.037 0.00 0.00 36.34 1.47
198 199 7.093988 CCACAACTTGTCCATTTGGTTCATATA 60.094 37.037 0.00 0.00 36.34 0.86
199 200 6.295236 CCACAACTTGTCCATTTGGTTCATAT 60.295 38.462 0.00 0.00 36.34 1.78
200 201 5.010516 CCACAACTTGTCCATTTGGTTCATA 59.989 40.000 0.00 0.00 36.34 2.15
201 202 4.202243 CCACAACTTGTCCATTTGGTTCAT 60.202 41.667 0.00 0.00 36.34 2.57
202 203 3.131933 CCACAACTTGTCCATTTGGTTCA 59.868 43.478 0.00 0.00 36.34 3.18
203 204 3.716601 CCACAACTTGTCCATTTGGTTC 58.283 45.455 0.00 0.00 36.34 3.62
204 205 2.158971 GCCACAACTTGTCCATTTGGTT 60.159 45.455 0.00 0.00 36.34 3.67
205 206 1.412343 GCCACAACTTGTCCATTTGGT 59.588 47.619 0.00 0.00 36.34 3.67
206 207 1.411977 TGCCACAACTTGTCCATTTGG 59.588 47.619 0.00 0.00 0.00 3.28
207 208 2.472816 GTGCCACAACTTGTCCATTTG 58.527 47.619 0.00 0.00 0.00 2.32
208 209 1.412343 GGTGCCACAACTTGTCCATTT 59.588 47.619 0.00 0.00 0.00 2.32
209 210 1.039856 GGTGCCACAACTTGTCCATT 58.960 50.000 0.00 0.00 0.00 3.16
210 211 0.106268 TGGTGCCACAACTTGTCCAT 60.106 50.000 0.00 0.00 0.00 3.41
211 212 0.751277 CTGGTGCCACAACTTGTCCA 60.751 55.000 0.00 0.00 0.00 4.02
212 213 0.751643 ACTGGTGCCACAACTTGTCC 60.752 55.000 0.00 0.00 0.00 4.02
213 214 1.102978 AACTGGTGCCACAACTTGTC 58.897 50.000 0.00 0.00 0.00 3.18
214 215 1.555967 AAACTGGTGCCACAACTTGT 58.444 45.000 0.00 0.00 0.00 3.16
215 216 2.671130 AAAACTGGTGCCACAACTTG 57.329 45.000 0.00 0.00 0.00 3.16
216 217 2.564947 TCAAAAACTGGTGCCACAACTT 59.435 40.909 0.00 0.00 0.00 2.66
217 218 2.094234 GTCAAAAACTGGTGCCACAACT 60.094 45.455 0.00 0.00 0.00 3.16
218 219 2.267426 GTCAAAAACTGGTGCCACAAC 58.733 47.619 0.00 0.00 0.00 3.32
219 220 1.895798 TGTCAAAAACTGGTGCCACAA 59.104 42.857 0.00 0.00 0.00 3.33
220 221 1.550327 TGTCAAAAACTGGTGCCACA 58.450 45.000 0.00 0.00 0.00 4.17
221 222 2.888834 ATGTCAAAAACTGGTGCCAC 57.111 45.000 0.00 0.00 0.00 5.01
222 223 3.902881 AAATGTCAAAAACTGGTGCCA 57.097 38.095 0.00 0.00 0.00 4.92
223 224 3.242706 GCAAAATGTCAAAAACTGGTGCC 60.243 43.478 0.00 0.00 0.00 5.01
224 225 3.373439 TGCAAAATGTCAAAAACTGGTGC 59.627 39.130 0.00 0.00 0.00 5.01
225 226 5.122082 ACTTGCAAAATGTCAAAAACTGGTG 59.878 36.000 0.00 0.00 0.00 4.17
226 227 5.244755 ACTTGCAAAATGTCAAAAACTGGT 58.755 33.333 0.00 0.00 0.00 4.00
227 228 5.799681 ACTTGCAAAATGTCAAAAACTGG 57.200 34.783 0.00 0.00 0.00 4.00
228 229 7.904461 CCTAAACTTGCAAAATGTCAAAAACTG 59.096 33.333 0.00 0.00 0.00 3.16
229 230 7.413988 GCCTAAACTTGCAAAATGTCAAAAACT 60.414 33.333 0.00 0.00 0.00 2.66
230 231 6.686679 GCCTAAACTTGCAAAATGTCAAAAAC 59.313 34.615 0.00 0.00 0.00 2.43
231 232 6.372659 TGCCTAAACTTGCAAAATGTCAAAAA 59.627 30.769 0.00 0.00 33.87 1.94
232 233 5.877012 TGCCTAAACTTGCAAAATGTCAAAA 59.123 32.000 0.00 0.00 33.87 2.44
233 234 5.293079 GTGCCTAAACTTGCAAAATGTCAAA 59.707 36.000 0.00 0.00 39.57 2.69
234 235 4.808364 GTGCCTAAACTTGCAAAATGTCAA 59.192 37.500 0.00 0.00 39.57 3.18
235 236 4.099266 AGTGCCTAAACTTGCAAAATGTCA 59.901 37.500 0.00 0.00 39.57 3.58
236 237 4.620982 AGTGCCTAAACTTGCAAAATGTC 58.379 39.130 0.00 0.00 39.57 3.06
237 238 4.670896 AGTGCCTAAACTTGCAAAATGT 57.329 36.364 0.00 0.00 39.57 2.71
238 239 6.701400 ACTTTAGTGCCTAAACTTGCAAAATG 59.299 34.615 0.00 0.00 39.57 2.32
239 240 6.701400 CACTTTAGTGCCTAAACTTGCAAAAT 59.299 34.615 0.00 0.00 39.57 1.82
240 241 6.039616 CACTTTAGTGCCTAAACTTGCAAAA 58.960 36.000 0.00 0.00 39.57 2.44
241 242 5.358442 TCACTTTAGTGCCTAAACTTGCAAA 59.642 36.000 0.00 0.00 45.25 3.68
242 243 4.884744 TCACTTTAGTGCCTAAACTTGCAA 59.115 37.500 0.00 0.00 45.25 4.08
243 244 4.274950 GTCACTTTAGTGCCTAAACTTGCA 59.725 41.667 5.00 0.00 45.25 4.08
244 245 4.320275 GGTCACTTTAGTGCCTAAACTTGC 60.320 45.833 5.00 0.00 45.25 4.01
245 246 4.084013 CGGTCACTTTAGTGCCTAAACTTG 60.084 45.833 16.06 5.04 45.25 3.16
246 247 4.062991 CGGTCACTTTAGTGCCTAAACTT 58.937 43.478 16.06 0.00 45.25 2.66
247 248 3.660865 CGGTCACTTTAGTGCCTAAACT 58.339 45.455 16.06 0.00 45.25 2.66
248 249 2.159037 GCGGTCACTTTAGTGCCTAAAC 59.841 50.000 16.06 6.14 45.25 2.01
249 250 2.419667 GCGGTCACTTTAGTGCCTAAA 58.580 47.619 16.06 7.05 45.25 1.85
250 251 1.670674 CGCGGTCACTTTAGTGCCTAA 60.671 52.381 16.06 0.00 45.25 2.69
251 252 0.108992 CGCGGTCACTTTAGTGCCTA 60.109 55.000 16.06 0.00 45.25 3.93
252 253 1.374252 CGCGGTCACTTTAGTGCCT 60.374 57.895 16.06 0.00 45.25 4.75
253 254 3.023591 GCGCGGTCACTTTAGTGCC 62.024 63.158 8.83 8.66 45.25 5.01
254 255 2.474712 GCGCGGTCACTTTAGTGC 59.525 61.111 8.83 1.18 45.25 4.40
255 256 2.726691 CGGCGCGGTCACTTTAGTG 61.727 63.158 8.83 3.47 46.91 2.74
256 257 2.431942 CGGCGCGGTCACTTTAGT 60.432 61.111 8.83 0.00 0.00 2.24
257 258 3.186047 CCGGCGCGGTCACTTTAG 61.186 66.667 8.83 0.00 42.73 1.85
267 268 2.736682 CCTAAACTTGTCCGGCGCG 61.737 63.158 0.00 0.00 0.00 6.86
268 269 3.035576 GCCTAAACTTGTCCGGCGC 62.036 63.158 0.00 0.00 0.00 6.53
269 270 1.669760 TGCCTAAACTTGTCCGGCG 60.670 57.895 0.00 0.00 43.54 6.46
270 271 1.583495 GGTGCCTAAACTTGTCCGGC 61.583 60.000 0.00 0.00 41.06 6.13
271 272 0.036306 AGGTGCCTAAACTTGTCCGG 59.964 55.000 0.00 0.00 0.00 5.14
272 273 1.002087 AGAGGTGCCTAAACTTGTCCG 59.998 52.381 0.00 0.00 0.00 4.79
273 274 2.427506 CAGAGGTGCCTAAACTTGTCC 58.572 52.381 0.00 0.00 0.00 4.02
274 275 2.224548 ACCAGAGGTGCCTAAACTTGTC 60.225 50.000 0.00 0.00 32.98 3.18
275 276 1.774856 ACCAGAGGTGCCTAAACTTGT 59.225 47.619 0.00 0.00 32.98 3.16
276 277 2.568623 ACCAGAGGTGCCTAAACTTG 57.431 50.000 0.00 0.00 32.98 3.16
287 288 3.113043 GGGAGGTAAATACACCAGAGGT 58.887 50.000 0.00 0.00 41.40 3.85
288 289 3.385115 AGGGAGGTAAATACACCAGAGG 58.615 50.000 0.00 0.00 41.40 3.69
289 290 4.960469 TGTAGGGAGGTAAATACACCAGAG 59.040 45.833 0.00 0.00 41.40 3.35
290 291 4.950361 TGTAGGGAGGTAAATACACCAGA 58.050 43.478 0.00 0.00 41.40 3.86
291 292 5.888982 ATGTAGGGAGGTAAATACACCAG 57.111 43.478 0.00 0.00 41.40 4.00
292 293 6.445786 AGAAATGTAGGGAGGTAAATACACCA 59.554 38.462 0.00 0.00 41.40 4.17
293 294 6.766467 CAGAAATGTAGGGAGGTAAATACACC 59.234 42.308 0.00 0.00 39.02 4.16
294 295 7.336396 ACAGAAATGTAGGGAGGTAAATACAC 58.664 38.462 0.00 0.00 31.41 2.90
295 296 7.504926 ACAGAAATGTAGGGAGGTAAATACA 57.495 36.000 0.00 0.00 33.04 2.29
296 297 9.543783 CTTACAGAAATGTAGGGAGGTAAATAC 57.456 37.037 0.00 0.00 0.00 1.89
297 298 9.496710 TCTTACAGAAATGTAGGGAGGTAAATA 57.503 33.333 0.00 0.00 0.00 1.40
298 299 8.388656 TCTTACAGAAATGTAGGGAGGTAAAT 57.611 34.615 0.00 0.00 0.00 1.40
299 300 7.093024 CCTCTTACAGAAATGTAGGGAGGTAAA 60.093 40.741 19.83 0.00 39.02 2.01
300 301 6.383147 CCTCTTACAGAAATGTAGGGAGGTAA 59.617 42.308 19.83 0.00 39.02 2.85
301 302 5.897824 CCTCTTACAGAAATGTAGGGAGGTA 59.102 44.000 19.83 0.00 39.02 3.08
302 303 4.717280 CCTCTTACAGAAATGTAGGGAGGT 59.283 45.833 19.83 0.00 39.02 3.85
303 304 4.443598 GCCTCTTACAGAAATGTAGGGAGG 60.444 50.000 21.80 21.80 42.29 4.30
304 305 4.407296 AGCCTCTTACAGAAATGTAGGGAG 59.593 45.833 10.68 10.68 0.00 4.30
305 306 4.362677 AGCCTCTTACAGAAATGTAGGGA 58.637 43.478 0.00 0.00 0.00 4.20
306 307 4.762289 AGCCTCTTACAGAAATGTAGGG 57.238 45.455 0.00 0.66 0.00 3.53
307 308 7.442666 GGAAATAGCCTCTTACAGAAATGTAGG 59.557 40.741 0.00 0.00 0.00 3.18
308 309 7.987458 TGGAAATAGCCTCTTACAGAAATGTAG 59.013 37.037 0.00 0.00 0.00 2.74
309 310 7.857456 TGGAAATAGCCTCTTACAGAAATGTA 58.143 34.615 0.00 0.00 0.00 2.29
310 311 6.721318 TGGAAATAGCCTCTTACAGAAATGT 58.279 36.000 0.00 0.00 0.00 2.71
311 312 6.261826 CCTGGAAATAGCCTCTTACAGAAATG 59.738 42.308 3.61 0.00 0.00 2.32
312 313 6.158695 TCCTGGAAATAGCCTCTTACAGAAAT 59.841 38.462 0.00 0.00 0.00 2.17
313 314 5.487488 TCCTGGAAATAGCCTCTTACAGAAA 59.513 40.000 0.00 0.00 0.00 2.52
314 315 5.030147 TCCTGGAAATAGCCTCTTACAGAA 58.970 41.667 0.00 0.00 0.00 3.02
315 316 4.406003 GTCCTGGAAATAGCCTCTTACAGA 59.594 45.833 0.00 0.00 0.00 3.41
316 317 4.407296 AGTCCTGGAAATAGCCTCTTACAG 59.593 45.833 0.00 0.00 0.00 2.74
317 318 4.362677 AGTCCTGGAAATAGCCTCTTACA 58.637 43.478 0.00 0.00 0.00 2.41
318 319 5.104900 TCAAGTCCTGGAAATAGCCTCTTAC 60.105 44.000 0.00 0.00 0.00 2.34
319 320 5.030147 TCAAGTCCTGGAAATAGCCTCTTA 58.970 41.667 0.00 0.00 0.00 2.10
320 321 3.846588 TCAAGTCCTGGAAATAGCCTCTT 59.153 43.478 0.00 0.00 0.00 2.85
321 322 3.454858 TCAAGTCCTGGAAATAGCCTCT 58.545 45.455 0.00 0.00 0.00 3.69
322 323 3.914426 TCAAGTCCTGGAAATAGCCTC 57.086 47.619 0.00 0.00 0.00 4.70
323 324 3.308473 GGTTCAAGTCCTGGAAATAGCCT 60.308 47.826 0.00 0.00 0.00 4.58
324 325 3.017442 GGTTCAAGTCCTGGAAATAGCC 58.983 50.000 0.00 0.00 0.00 3.93
325 326 3.017442 GGGTTCAAGTCCTGGAAATAGC 58.983 50.000 0.00 0.00 0.00 2.97
326 327 3.270877 CGGGTTCAAGTCCTGGAAATAG 58.729 50.000 0.00 0.00 0.00 1.73
327 328 2.640826 ACGGGTTCAAGTCCTGGAAATA 59.359 45.455 0.00 0.00 35.79 1.40
328 329 1.423921 ACGGGTTCAAGTCCTGGAAAT 59.576 47.619 0.00 0.00 35.79 2.17
329 330 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
330 331 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
331 332 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
332 333 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
333 334 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
334 335 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
335 336 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
336 337 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
337 338 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
338 339 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
339 340 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
340 341 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
341 342 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
351 352 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
352 353 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
353 354 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
354 355 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
355 356 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
356 357 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
357 358 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
358 359 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
359 360 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
360 361 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
361 362 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
362 363 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
363 364 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
364 365 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
365 366 0.890996 ACAGTGGTAAAGCTGCTGCC 60.891 55.000 12.44 7.07 40.80 4.85
366 367 0.239347 CACAGTGGTAAAGCTGCTGC 59.761 55.000 1.35 7.62 36.26 5.25
367 368 0.239347 GCACAGTGGTAAAGCTGCTG 59.761 55.000 1.35 0.00 36.26 4.41
368 369 0.890996 GGCACAGTGGTAAAGCTGCT 60.891 55.000 1.84 0.00 36.26 4.24
369 370 0.890996 AGGCACAGTGGTAAAGCTGC 60.891 55.000 1.84 0.00 36.26 5.25
370 371 1.609208 AAGGCACAGTGGTAAAGCTG 58.391 50.000 1.84 0.00 38.58 4.24
371 372 2.158608 AGAAAGGCACAGTGGTAAAGCT 60.159 45.455 1.84 0.00 0.00 3.74
372 373 2.226674 GAGAAAGGCACAGTGGTAAAGC 59.773 50.000 1.84 0.00 0.00 3.51
373 374 2.480419 CGAGAAAGGCACAGTGGTAAAG 59.520 50.000 1.84 0.00 0.00 1.85
374 375 2.103432 TCGAGAAAGGCACAGTGGTAAA 59.897 45.455 1.84 0.00 0.00 2.01
375 376 1.689813 TCGAGAAAGGCACAGTGGTAA 59.310 47.619 1.84 0.00 0.00 2.85
376 377 1.334160 TCGAGAAAGGCACAGTGGTA 58.666 50.000 1.84 0.00 0.00 3.25
377 378 0.468226 TTCGAGAAAGGCACAGTGGT 59.532 50.000 1.84 0.00 0.00 4.16
378 379 1.151668 CTTCGAGAAAGGCACAGTGG 58.848 55.000 1.84 0.00 0.00 4.00
379 380 1.871080 ACTTCGAGAAAGGCACAGTG 58.129 50.000 0.00 0.00 39.47 3.66
380 381 3.746045 TTACTTCGAGAAAGGCACAGT 57.254 42.857 0.00 0.00 39.47 3.55
381 382 5.418310 TTTTTACTTCGAGAAAGGCACAG 57.582 39.130 0.00 0.00 39.47 3.66
532 539 1.001641 GATGGTGGCTGCTGAACCT 60.002 57.895 16.59 6.41 34.90 3.50
654 677 2.774439 ATTGCCGTGTTCAACAAGTC 57.226 45.000 2.65 0.00 0.00 3.01
736 762 6.999871 TCATGACTGAATACCATGCATAATGT 59.000 34.615 0.00 0.00 37.99 2.71
801 834 5.936372 CCCCTGTTACCTAAACTTAACACTC 59.064 44.000 0.00 0.00 38.99 3.51
837 870 6.094603 ACATTCAGAATTTGATCCAGCTACAC 59.905 38.462 0.00 0.00 35.27 2.90
906 968 2.586425 CACCCACACATTCCAAAGAGT 58.414 47.619 0.00 0.00 0.00 3.24
907 969 1.270550 GCACCCACACATTCCAAAGAG 59.729 52.381 0.00 0.00 0.00 2.85
991 1055 0.676466 TGTAAGGCCATGGTTGCGAG 60.676 55.000 14.67 0.00 0.00 5.03
1032 1096 3.110031 ACTTGGGCCAGTTGGGGT 61.110 61.111 6.23 0.00 37.04 4.95
1219 1310 7.936847 AGGCCATTATTTCGTGTATATTCAGAA 59.063 33.333 5.01 0.00 0.00 3.02
1516 1625 5.800296 TCCATTTGACGAATCTCCTGTTAA 58.200 37.500 0.00 0.00 0.00 2.01
1580 1689 5.453281 TCAACGTAACAACACACACTAAC 57.547 39.130 0.00 0.00 0.00 2.34
1612 1721 2.279935 AATTTTGTGTGCTCCCCGTA 57.720 45.000 0.00 0.00 0.00 4.02
1701 1811 7.201600 CGAAAATGAACACCCAAAAAGAAACAT 60.202 33.333 0.00 0.00 0.00 2.71
1840 1953 3.009473 CCATTCTGGGAAGAAAGACTCCA 59.991 47.826 0.00 0.00 32.67 3.86
1841 1954 3.264450 TCCATTCTGGGAAGAAAGACTCC 59.736 47.826 0.00 0.00 38.32 3.85
2183 2386 3.552604 TTGCCAAACTTCATAACGAGC 57.447 42.857 0.00 0.00 0.00 5.03
2286 2492 1.411612 TGTGCATTGTGTCATTGCCAA 59.588 42.857 12.02 0.00 39.18 4.52
2287 2493 1.000052 CTGTGCATTGTGTCATTGCCA 60.000 47.619 12.02 9.33 39.18 4.92
2405 2752 3.835395 AGTCAGTAGTTCCTTTCCTCCAG 59.165 47.826 0.00 0.00 0.00 3.86
2415 2762 0.889306 AGGCGACAGTCAGTAGTTCC 59.111 55.000 0.41 0.00 0.00 3.62
2483 2848 4.617223 GCGCTACAAAAAGTTCTGAATTCC 59.383 41.667 0.00 0.00 0.00 3.01
2493 2858 1.607148 GGGTTCTGCGCTACAAAAAGT 59.393 47.619 9.73 0.00 0.00 2.66
2494 2859 1.606668 TGGGTTCTGCGCTACAAAAAG 59.393 47.619 9.73 0.00 0.00 2.27
2543 2908 7.208080 ACTACACCACTACAACTTAAGTTCAG 58.792 38.462 18.00 18.37 35.83 3.02
2638 3817 1.826385 ACTGCTTACCATGTTCAGGC 58.174 50.000 0.00 0.00 0.00 4.85
2677 3856 4.543590 TTTTGCAGGAAAACAGGAACAA 57.456 36.364 0.00 0.00 0.00 2.83
2757 3936 1.480212 AAGGTGATGTGCGGTCTCCA 61.480 55.000 6.65 0.00 32.92 3.86
2799 3978 2.049156 CGCAGAGAGTTCGGCACA 60.049 61.111 1.05 0.00 43.60 4.57
2800 3979 3.482783 GCGCAGAGAGTTCGGCAC 61.483 66.667 0.30 0.00 43.60 5.01
2884 4090 1.301479 GTTGAACGCCCGTCCTTCT 60.301 57.895 0.00 0.00 0.00 2.85
2944 4198 4.383774 TGACGTGATTTGATTTGACGAC 57.616 40.909 0.00 0.00 34.22 4.34
2948 4202 3.567585 TGGCTTGACGTGATTTGATTTGA 59.432 39.130 0.00 0.00 0.00 2.69
3020 4274 2.030562 GTGCCGTGGTGCTGTAGT 59.969 61.111 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.