Multiple sequence alignment - TraesCS5B01G429100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G429100 chr5B 100.000 5477 0 0 1 5477 604720172 604714696 0.000000e+00 10115.0
1 TraesCS5B01G429100 chr5B 95.682 2200 61 6 983 3162 632805928 632808113 0.000000e+00 3506.0
2 TraesCS5B01G429100 chr5B 95.488 2194 69 9 983 3162 625452238 625450061 0.000000e+00 3476.0
3 TraesCS5B01G429100 chr5B 95.023 1929 68 7 983 2898 629080470 629078557 0.000000e+00 3005.0
4 TraesCS5B01G429100 chr5B 94.245 1251 31 7 3159 4379 629078027 629076788 0.000000e+00 1873.0
5 TraesCS5B01G429100 chr5B 94.245 1251 26 8 3159 4379 632808269 632809503 0.000000e+00 1869.0
6 TraesCS5B01G429100 chr5B 92.486 1251 31 8 3159 4379 625449905 625448688 0.000000e+00 1731.0
7 TraesCS5B01G429100 chr5B 90.000 750 49 12 4382 5129 625448628 625447903 0.000000e+00 946.0
8 TraesCS5B01G429100 chr5B 89.853 749 52 11 4382 5129 629076728 629076003 0.000000e+00 941.0
9 TraesCS5B01G429100 chr5B 98.292 527 7 2 1 527 604354873 604355397 0.000000e+00 922.0
10 TraesCS5B01G429100 chr5B 88.540 733 59 11 4398 5129 632809575 632810283 0.000000e+00 865.0
11 TraesCS5B01G429100 chr5B 98.043 460 8 1 528 987 72093620 72093162 0.000000e+00 798.0
12 TraesCS5B01G429100 chr5B 97.582 455 11 0 528 982 50496813 50496359 0.000000e+00 780.0
13 TraesCS5B01G429100 chr5B 97.374 457 12 0 528 984 457449034 457448578 0.000000e+00 778.0
14 TraesCS5B01G429100 chr5B 80.879 774 128 15 1187 1943 633278408 633279178 4.720000e-165 592.0
15 TraesCS5B01G429100 chr5B 95.739 352 14 1 5127 5477 625447836 625447485 2.860000e-157 566.0
16 TraesCS5B01G429100 chr5B 95.739 352 14 1 5127 5477 629075936 629075585 2.860000e-157 566.0
17 TraesCS5B01G429100 chr5B 94.602 352 18 1 5127 5477 632810350 632810701 1.340000e-150 544.0
18 TraesCS5B01G429100 chr5B 99.240 263 2 0 2900 3162 629078445 629078183 4.960000e-130 475.0
19 TraesCS5B01G429100 chr5B 89.456 294 25 4 5187 5477 282263408 282263118 3.120000e-97 366.0
20 TraesCS5B01G429100 chr5B 92.784 194 9 3 1 191 604743925 604743734 5.400000e-70 276.0
21 TraesCS5B01G429100 chr5B 92.308 195 9 5 1 191 632804380 632804572 6.990000e-69 272.0
22 TraesCS5B01G429100 chr5B 92.268 194 10 3 1 191 629082028 629081837 2.510000e-68 270.0
23 TraesCS5B01G429100 chr5B 91.753 194 11 3 1 191 625453879 625453688 1.170000e-66 265.0
24 TraesCS5B01G429100 chr5B 94.304 158 5 4 254 407 629081856 629081699 7.090000e-59 239.0
25 TraesCS5B01G429100 chr5B 93.671 158 6 4 254 407 625453707 625453550 3.300000e-57 233.0
26 TraesCS5B01G429100 chr5B 99.153 118 1 0 983 1100 604355390 604355507 4.300000e-51 213.0
27 TraesCS5B01G429100 chr5B 91.083 157 11 3 254 407 632804553 632804709 5.560000e-50 209.0
28 TraesCS5B01G429100 chr5B 99.065 107 0 1 399 505 629080605 629080500 2.010000e-44 191.0
29 TraesCS5B01G429100 chr5B 99.010 101 1 0 405 505 625452368 625452268 1.210000e-41 182.0
30 TraesCS5B01G429100 chr5B 97.222 108 1 2 399 505 632805792 632805898 1.210000e-41 182.0
31 TraesCS5B01G429100 chr5B 75.229 327 76 5 2206 2528 626803335 626803010 3.420000e-32 150.0
32 TraesCS5B01G429100 chr5B 75.152 330 71 10 2206 2528 623138897 623138572 1.590000e-30 145.0
33 TraesCS5B01G429100 chr5B 100.000 77 0 0 4952 5028 604715151 604715075 5.720000e-30 143.0
34 TraesCS5B01G429100 chr5B 100.000 77 0 0 5022 5098 604715221 604715145 5.720000e-30 143.0
35 TraesCS5B01G429100 chr5B 93.684 95 6 0 254 348 604743753 604743659 5.720000e-30 143.0
36 TraesCS5B01G429100 chr5B 90.090 111 5 2 4305 4411 632809612 632809504 7.400000e-29 139.0
37 TraesCS5B01G429100 chr5B 92.632 95 7 0 254 348 604490948 604490854 2.660000e-28 137.0
38 TraesCS5B01G429100 chr5B 78.112 233 32 12 2457 2685 627470587 627470370 4.450000e-26 130.0
39 TraesCS5B01G429100 chr5B 72.934 484 90 24 2206 2651 629281355 629281835 4.450000e-26 130.0
40 TraesCS5B01G429100 chr5B 72.934 484 90 24 2206 2651 629363649 629364129 4.450000e-26 130.0
41 TraesCS5B01G429100 chr5B 77.682 233 33 12 2457 2685 623866292 623866075 2.070000e-24 124.0
42 TraesCS5B01G429100 chr5B 78.241 216 27 13 2475 2685 623586941 623586741 2.680000e-23 121.0
43 TraesCS5B01G429100 chr5B 78.241 216 27 13 2475 2685 627184959 627184759 2.680000e-23 121.0
44 TraesCS5B01G429100 chr5B 86.047 86 8 1 4026 4111 633281230 633281311 7.560000e-14 89.8
45 TraesCS5B01G429100 chr5B 88.462 52 6 0 4385 4436 694904187 694904238 4.580000e-06 63.9
46 TraesCS5B01G429100 chr5B 88.462 52 6 0 4385 4436 694991685 694991736 4.580000e-06 63.9
47 TraesCS5B01G429100 chr5B 88.462 52 6 0 4385 4436 695192102 695192153 4.580000e-06 63.9
48 TraesCS5B01G429100 chr5B 88.462 52 6 0 4385 4436 695300721 695300772 4.580000e-06 63.9
49 TraesCS5B01G429100 chr5D 95.942 2193 60 8 983 3162 498929444 498927268 0.000000e+00 3530.0
50 TraesCS5B01G429100 chr5D 95.035 1430 56 6 983 2412 501710926 501709512 0.000000e+00 2233.0
51 TraesCS5B01G429100 chr5D 94.543 1246 26 7 3159 4379 498927112 498925884 0.000000e+00 1886.0
52 TraesCS5B01G429100 chr5D 94.404 1251 29 10 3159 4379 501708647 501707408 0.000000e+00 1884.0
53 TraesCS5B01G429100 chr5D 96.484 711 12 1 2465 3162 501709513 501708803 0.000000e+00 1162.0
54 TraesCS5B01G429100 chr5D 89.793 725 50 9 4406 5129 498925821 498925120 0.000000e+00 907.0
55 TraesCS5B01G429100 chr5D 89.222 733 54 11 4398 5129 501707336 501706628 0.000000e+00 893.0
56 TraesCS5B01G429100 chr5D 81.718 815 129 12 1146 1943 501430244 501429433 0.000000e+00 662.0
57 TraesCS5B01G429100 chr5D 95.455 352 15 1 5127 5477 498925053 498924702 1.330000e-155 560.0
58 TraesCS5B01G429100 chr5D 95.170 352 16 1 5127 5477 501706561 501706210 6.200000e-154 555.0
59 TraesCS5B01G429100 chr5D 90.541 296 22 4 5185 5477 249522097 249521805 2.390000e-103 387.0
60 TraesCS5B01G429100 chr5D 89.796 294 27 2 5187 5477 276703037 276703330 1.860000e-99 374.0
61 TraesCS5B01G429100 chr5D 91.753 194 9 4 1 191 498931138 498930949 4.210000e-66 263.0
62 TraesCS5B01G429100 chr5D 80.060 331 48 13 2344 2661 501428999 501428674 4.270000e-56 230.0
63 TraesCS5B01G429100 chr5D 93.038 158 7 4 254 407 498930968 498930811 1.530000e-55 228.0
64 TraesCS5B01G429100 chr5D 98.131 107 1 1 399 505 498929579 498929474 9.370000e-43 185.0
65 TraesCS5B01G429100 chr5D 97.196 107 2 1 399 505 501711061 501710956 4.360000e-41 180.0
66 TraesCS5B01G429100 chr5D 73.488 430 104 9 2109 2530 501439421 501438994 2.640000e-33 154.0
67 TraesCS5B01G429100 chr5D 90.090 111 5 2 4305 4411 501707299 501707407 7.400000e-29 139.0
68 TraesCS5B01G429100 chr5D 77.828 221 26 7 2487 2685 296451228 296451447 1.250000e-21 115.0
69 TraesCS5B01G429100 chr5D 77.828 221 26 7 2487 2685 296475939 296476158 1.250000e-21 115.0
70 TraesCS5B01G429100 chr5D 83.206 131 17 3 3981 4111 501427950 501427825 1.250000e-21 115.0
71 TraesCS5B01G429100 chr5D 81.481 135 20 5 1815 1945 501446235 501446102 7.500000e-19 106.0
72 TraesCS5B01G429100 chr5D 90.909 66 4 2 2474 2538 501444267 501444203 2.720000e-13 87.9
73 TraesCS5B01G429100 chr5D 76.382 199 23 9 2486 2674 501823315 501823131 9.780000e-13 86.1
74 TraesCS5B01G429100 chr5D 76.382 199 23 9 2486 2674 501863020 501862836 9.780000e-13 86.1
75 TraesCS5B01G429100 chr4A 98.246 456 8 0 527 982 674355433 674355888 0.000000e+00 798.0
76 TraesCS5B01G429100 chr3B 98.022 455 9 0 528 982 222146988 222147442 0.000000e+00 791.0
77 TraesCS5B01G429100 chr3B 81.892 867 139 9 1119 1967 462100099 462099233 0.000000e+00 715.0
78 TraesCS5B01G429100 chr3B 83.815 173 21 7 2991 3162 462097574 462097408 2.040000e-34 158.0
79 TraesCS5B01G429100 chr3A 97.812 457 8 2 527 982 431863258 431863713 0.000000e+00 787.0
80 TraesCS5B01G429100 chr3A 97.812 457 9 1 526 982 580560621 580560166 0.000000e+00 787.0
81 TraesCS5B01G429100 chr2B 97.807 456 9 1 527 982 676743427 676742973 0.000000e+00 785.0
82 TraesCS5B01G429100 chr2B 85.851 629 73 7 1150 1762 667422783 667422155 0.000000e+00 654.0
83 TraesCS5B01G429100 chr2B 77.944 535 76 22 2024 2532 667421971 667421453 4.150000e-76 296.0
84 TraesCS5B01G429100 chr2A 97.807 456 9 1 527 982 25350592 25351046 0.000000e+00 785.0
85 TraesCS5B01G429100 chr2A 77.909 593 91 14 1963 2531 699527576 699527000 3.160000e-87 333.0
86 TraesCS5B01G429100 chr5A 89.384 292 25 4 5187 5475 332213690 332213402 4.030000e-96 363.0
87 TraesCS5B01G429100 chr5A 74.548 609 115 25 2104 2686 629249618 629249024 4.270000e-56 230.0
88 TraesCS5B01G429100 chr5A 74.300 607 114 26 2104 2686 629373396 629373984 9.240000e-53 219.0
89 TraesCS5B01G429100 chr5A 81.935 155 21 5 2474 2621 599555671 599555517 2.070000e-24 124.0
90 TraesCS5B01G429100 chr4D 85.217 115 13 4 4334 4445 362116404 362116517 1.250000e-21 115.0
91 TraesCS5B01G429100 chr1D 86.735 98 10 3 4316 4413 84570962 84570868 7.500000e-19 106.0
92 TraesCS5B01G429100 chr1D 93.103 58 3 1 4385 4441 399819766 399819823 3.520000e-12 84.2
93 TraesCS5B01G429100 chr3D 98.077 52 0 1 4389 4439 119114446 119114497 7.560000e-14 89.8
94 TraesCS5B01G429100 chr7D 100.000 40 0 0 4305 4344 632327892 632327931 2.120000e-09 75.0
95 TraesCS5B01G429100 chr7D 97.143 35 1 0 2768 2802 516029082 516029116 5.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G429100 chr5B 604714696 604720172 5476 True 10115.000000 10115 100.000000 1 5477 1 chr5B.!!$R6 5476
1 TraesCS5B01G429100 chr5B 632804380 632810701 6321 False 1063.857143 3506 93.383143 1 5477 7 chr5B.!!$F8 5476
2 TraesCS5B01G429100 chr5B 625447485 625453879 6394 True 1057.000000 3476 94.021000 1 5477 7 chr5B.!!$R16 5476
3 TraesCS5B01G429100 chr5B 629075585 629082028 6443 True 945.000000 3005 94.967125 1 5477 8 chr5B.!!$R17 5476
4 TraesCS5B01G429100 chr5B 604354873 604355507 634 False 567.500000 922 98.722500 1 1100 2 chr5B.!!$F7 1099
5 TraesCS5B01G429100 chr5B 633278408 633281311 2903 False 340.900000 592 83.463000 1187 4111 2 chr5B.!!$F9 2924
6 TraesCS5B01G429100 chr5D 501706210 501711061 4851 True 1151.166667 2233 94.585167 399 5477 6 chr5D.!!$R8 5078
7 TraesCS5B01G429100 chr5D 498924702 498931138 6436 True 1079.857143 3530 94.093571 1 5477 7 chr5D.!!$R5 5476
8 TraesCS5B01G429100 chr5D 501427825 501430244 2419 True 335.666667 662 81.661333 1146 4111 3 chr5D.!!$R6 2965
9 TraesCS5B01G429100 chr3B 462097408 462100099 2691 True 436.500000 715 82.853500 1119 3162 2 chr3B.!!$R1 2043
10 TraesCS5B01G429100 chr2B 667421453 667422783 1330 True 475.000000 654 81.897500 1150 2532 2 chr2B.!!$R2 1382
11 TraesCS5B01G429100 chr2A 699527000 699527576 576 True 333.000000 333 77.909000 1963 2531 1 chr2A.!!$R1 568
12 TraesCS5B01G429100 chr5A 629249024 629249618 594 True 230.000000 230 74.548000 2104 2686 1 chr5A.!!$R3 582
13 TraesCS5B01G429100 chr5A 629373396 629373984 588 False 219.000000 219 74.300000 2104 2686 1 chr5A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 2345 0.030092 TTGGCCAGCTATACTCCCCT 60.030 55.0 5.11 0.0 0.0 4.79 F
989 2346 0.471971 TGGCCAGCTATACTCCCCTC 60.472 60.0 0.00 0.0 0.0 4.30 F
1728 3111 0.528017 TCGAGCTCTGCGTCTTCAAT 59.472 50.0 12.85 0.0 0.0 2.57 F
2325 3754 0.254178 CCCTATGCTGCCTGTTGAGT 59.746 55.0 0.00 0.0 0.0 3.41 F
3638 6232 0.112995 AAAGCCATTCTCCCTGCACA 59.887 50.0 0.00 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 3408 0.601311 GGAATCTCGCCGCTAAGCAT 60.601 55.000 0.00 0.0 0.0 3.79 R
2124 3537 0.767375 TCTTTTGGAGAGGCTGCTGT 59.233 50.000 0.00 0.0 0.0 4.40 R
3180 5737 1.293498 GACGGCAGAAGGAGCAAGA 59.707 57.895 0.00 0.0 0.0 3.02 R
3684 6278 1.625818 GGAAGACAGACACATGAGGGT 59.374 52.381 0.00 0.0 0.0 4.34 R
4967 7902 0.029567 TTGTTGGCGGCGTTAAACTG 59.970 50.000 9.37 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 183 2.358737 GAAGTGGGCGGAGTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
334 339 3.317603 TCACATCAACGCAAGAGATCA 57.682 42.857 0.00 0.00 43.62 2.92
528 1885 3.449126 GCCCTCCCCTCCCCTCTA 61.449 72.222 0.00 0.00 0.00 2.43
529 1886 2.807382 GCCCTCCCCTCCCCTCTAT 61.807 68.421 0.00 0.00 0.00 1.98
530 1887 1.453082 GCCCTCCCCTCCCCTCTATA 61.453 65.000 0.00 0.00 0.00 1.31
531 1888 0.713579 CCCTCCCCTCCCCTCTATAG 59.286 65.000 0.00 0.00 0.00 1.31
532 1889 0.041982 CCTCCCCTCCCCTCTATAGC 59.958 65.000 0.00 0.00 0.00 2.97
533 1890 1.089123 CTCCCCTCCCCTCTATAGCT 58.911 60.000 0.00 0.00 0.00 3.32
534 1891 0.787084 TCCCCTCCCCTCTATAGCTG 59.213 60.000 0.00 0.00 0.00 4.24
535 1892 0.252467 CCCCTCCCCTCTATAGCTGG 60.252 65.000 0.00 0.00 0.00 4.85
536 1893 0.907230 CCCTCCCCTCTATAGCTGGC 60.907 65.000 0.00 0.00 0.00 4.85
537 1894 0.907230 CCTCCCCTCTATAGCTGGCC 60.907 65.000 0.00 0.00 0.00 5.36
538 1895 0.178921 CTCCCCTCTATAGCTGGCCA 60.179 60.000 4.71 4.71 0.00 5.36
539 1896 0.267658 TCCCCTCTATAGCTGGCCAA 59.732 55.000 7.01 0.00 0.00 4.52
540 1897 1.140312 CCCCTCTATAGCTGGCCAAA 58.860 55.000 7.01 0.00 0.00 3.28
541 1898 1.202818 CCCCTCTATAGCTGGCCAAAC 60.203 57.143 7.01 1.16 0.00 2.93
542 1899 1.541233 CCCTCTATAGCTGGCCAAACG 60.541 57.143 7.01 0.00 0.00 3.60
543 1900 1.541233 CCTCTATAGCTGGCCAAACGG 60.541 57.143 7.01 0.00 0.00 4.44
544 1901 0.468226 TCTATAGCTGGCCAAACGGG 59.532 55.000 7.01 0.00 40.85 5.28
580 1937 3.307379 GGCACGTCCCATCCTAATC 57.693 57.895 0.00 0.00 0.00 1.75
581 1938 0.600255 GGCACGTCCCATCCTAATCG 60.600 60.000 0.00 0.00 0.00 3.34
582 1939 0.104304 GCACGTCCCATCCTAATCGT 59.896 55.000 0.00 0.00 0.00 3.73
583 1940 1.852942 CACGTCCCATCCTAATCGTG 58.147 55.000 0.00 0.00 41.40 4.35
584 1941 0.104304 ACGTCCCATCCTAATCGTGC 59.896 55.000 0.00 0.00 0.00 5.34
585 1942 0.600255 CGTCCCATCCTAATCGTGCC 60.600 60.000 0.00 0.00 0.00 5.01
586 1943 0.759346 GTCCCATCCTAATCGTGCCT 59.241 55.000 0.00 0.00 0.00 4.75
587 1944 0.758734 TCCCATCCTAATCGTGCCTG 59.241 55.000 0.00 0.00 0.00 4.85
588 1945 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
589 1946 0.886490 CCATCCTAATCGTGCCTGGC 60.886 60.000 12.87 12.87 0.00 4.85
590 1947 0.179048 CATCCTAATCGTGCCTGGCA 60.179 55.000 19.30 19.30 35.60 4.92
616 1973 3.134879 CCCGCCTAGGCACGATTA 58.865 61.111 32.47 0.00 42.06 1.75
617 1974 1.671742 CCCGCCTAGGCACGATTAT 59.328 57.895 32.47 0.00 42.06 1.28
618 1975 0.034896 CCCGCCTAGGCACGATTATT 59.965 55.000 32.47 0.00 42.06 1.40
619 1976 1.274167 CCCGCCTAGGCACGATTATTA 59.726 52.381 32.47 0.00 42.06 0.98
620 1977 2.093658 CCCGCCTAGGCACGATTATTAT 60.094 50.000 32.47 0.00 42.06 1.28
621 1978 3.131577 CCCGCCTAGGCACGATTATTATA 59.868 47.826 32.47 0.00 42.06 0.98
622 1979 4.110482 CCGCCTAGGCACGATTATTATAC 58.890 47.826 32.47 0.00 42.06 1.47
623 1980 3.789756 CGCCTAGGCACGATTATTATACG 59.210 47.826 32.47 7.82 42.06 3.06
624 1981 4.110482 GCCTAGGCACGATTATTATACGG 58.890 47.826 29.33 0.00 41.49 4.02
625 1982 4.679662 CCTAGGCACGATTATTATACGGG 58.320 47.826 0.00 0.00 0.00 5.28
626 1983 4.159135 CCTAGGCACGATTATTATACGGGT 59.841 45.833 0.00 0.00 32.80 5.28
627 1984 4.184079 AGGCACGATTATTATACGGGTC 57.816 45.455 0.00 0.00 35.22 4.46
628 1985 2.919229 GGCACGATTATTATACGGGTCG 59.081 50.000 0.00 0.00 32.80 4.79
629 1986 3.568538 GCACGATTATTATACGGGTCGT 58.431 45.455 0.00 0.00 44.35 4.34
631 1988 3.568538 ACGATTATTATACGGGTCGTGC 58.431 45.455 3.03 0.00 41.39 5.34
632 1989 2.919229 CGATTATTATACGGGTCGTGCC 59.081 50.000 3.03 0.00 41.39 5.01
633 1990 2.420628 TTATTATACGGGTCGTGCCG 57.579 50.000 3.03 0.00 41.39 5.69
634 1991 1.317613 TATTATACGGGTCGTGCCGT 58.682 50.000 0.00 0.00 41.39 5.68
635 1992 0.249155 ATTATACGGGTCGTGCCGTG 60.249 55.000 0.00 0.00 41.39 4.94
636 1993 2.887463 TTATACGGGTCGTGCCGTGC 62.887 60.000 0.00 0.00 41.39 5.34
682 2039 4.230002 GGCACGGCCCGTATGCTA 62.230 66.667 9.25 0.00 44.06 3.49
683 2040 2.202960 GCACGGCCCGTATGCTAA 60.203 61.111 9.25 0.00 38.32 3.09
684 2041 1.597027 GCACGGCCCGTATGCTAAT 60.597 57.895 9.25 0.00 38.32 1.73
685 2042 1.566018 GCACGGCCCGTATGCTAATC 61.566 60.000 9.25 0.00 38.32 1.75
686 2043 1.006571 ACGGCCCGTATGCTAATCG 60.007 57.895 7.20 0.00 38.73 3.34
687 2044 1.736645 CGGCCCGTATGCTAATCGG 60.737 63.158 0.00 0.00 43.30 4.18
690 2047 4.278956 CCGTATGCTAATCGGGCC 57.721 61.111 0.00 0.00 40.49 5.80
691 2048 1.736645 CCGTATGCTAATCGGGCCG 60.737 63.158 22.51 22.51 40.49 6.13
692 2049 1.736645 CGTATGCTAATCGGGCCGG 60.737 63.158 27.98 11.17 0.00 6.13
693 2050 2.033194 GTATGCTAATCGGGCCGGC 61.033 63.158 27.98 21.18 0.00 6.13
694 2051 3.248446 TATGCTAATCGGGCCGGCC 62.248 63.158 38.57 38.57 0.00 6.13
717 2074 4.715523 GCACGCCAGGCCCACTAA 62.716 66.667 5.63 0.00 0.00 2.24
718 2075 2.272146 CACGCCAGGCCCACTAAT 59.728 61.111 5.63 0.00 0.00 1.73
719 2076 1.819632 CACGCCAGGCCCACTAATC 60.820 63.158 5.63 0.00 0.00 1.75
720 2077 1.995626 ACGCCAGGCCCACTAATCT 60.996 57.895 5.63 0.00 0.00 2.40
721 2078 0.689745 ACGCCAGGCCCACTAATCTA 60.690 55.000 5.63 0.00 0.00 1.98
722 2079 0.249911 CGCCAGGCCCACTAATCTAC 60.250 60.000 5.63 0.00 0.00 2.59
723 2080 0.108774 GCCAGGCCCACTAATCTACC 59.891 60.000 0.00 0.00 0.00 3.18
724 2081 1.807814 CCAGGCCCACTAATCTACCT 58.192 55.000 0.00 0.00 0.00 3.08
725 2082 1.694696 CCAGGCCCACTAATCTACCTC 59.305 57.143 0.00 0.00 0.00 3.85
726 2083 1.694696 CAGGCCCACTAATCTACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
727 2084 1.581149 AGGCCCACTAATCTACCTCCT 59.419 52.381 0.00 0.00 0.00 3.69
728 2085 2.795960 AGGCCCACTAATCTACCTCCTA 59.204 50.000 0.00 0.00 0.00 2.94
729 2086 3.406498 AGGCCCACTAATCTACCTCCTAT 59.594 47.826 0.00 0.00 0.00 2.57
730 2087 4.140423 AGGCCCACTAATCTACCTCCTATT 60.140 45.833 0.00 0.00 0.00 1.73
731 2088 4.597940 GGCCCACTAATCTACCTCCTATTT 59.402 45.833 0.00 0.00 0.00 1.40
732 2089 5.073280 GGCCCACTAATCTACCTCCTATTTT 59.927 44.000 0.00 0.00 0.00 1.82
733 2090 5.998363 GCCCACTAATCTACCTCCTATTTTG 59.002 44.000 0.00 0.00 0.00 2.44
734 2091 5.998363 CCCACTAATCTACCTCCTATTTTGC 59.002 44.000 0.00 0.00 0.00 3.68
735 2092 5.696724 CCACTAATCTACCTCCTATTTTGCG 59.303 44.000 0.00 0.00 0.00 4.85
736 2093 5.177696 CACTAATCTACCTCCTATTTTGCGC 59.822 44.000 0.00 0.00 0.00 6.09
737 2094 3.838244 ATCTACCTCCTATTTTGCGCA 57.162 42.857 5.66 5.66 0.00 6.09
738 2095 3.838244 TCTACCTCCTATTTTGCGCAT 57.162 42.857 12.75 0.00 0.00 4.73
739 2096 4.150897 TCTACCTCCTATTTTGCGCATT 57.849 40.909 12.75 1.44 0.00 3.56
740 2097 3.876914 TCTACCTCCTATTTTGCGCATTG 59.123 43.478 12.75 0.00 0.00 2.82
741 2098 2.722094 ACCTCCTATTTTGCGCATTGA 58.278 42.857 12.75 0.00 0.00 2.57
742 2099 2.684881 ACCTCCTATTTTGCGCATTGAG 59.315 45.455 12.75 10.76 0.00 3.02
743 2100 2.542411 CCTCCTATTTTGCGCATTGAGC 60.542 50.000 12.75 5.34 40.87 4.26
771 2128 5.907866 TTAGCCTATTTTTACCTGTTGGC 57.092 39.130 0.00 0.00 39.40 4.52
772 2129 3.096852 AGCCTATTTTTACCTGTTGGCC 58.903 45.455 0.00 0.00 39.90 5.36
773 2130 2.167693 GCCTATTTTTACCTGTTGGCCC 59.832 50.000 0.00 0.00 36.63 5.80
774 2131 3.436243 CCTATTTTTACCTGTTGGCCCA 58.564 45.455 0.00 0.00 36.63 5.36
775 2132 4.030216 CCTATTTTTACCTGTTGGCCCAT 58.970 43.478 0.00 0.00 36.63 4.00
776 2133 5.205056 CCTATTTTTACCTGTTGGCCCATA 58.795 41.667 0.00 0.00 36.63 2.74
777 2134 5.838521 CCTATTTTTACCTGTTGGCCCATAT 59.161 40.000 0.00 0.00 36.63 1.78
778 2135 6.326323 CCTATTTTTACCTGTTGGCCCATATT 59.674 38.462 0.00 0.00 36.63 1.28
779 2136 7.507616 CCTATTTTTACCTGTTGGCCCATATTA 59.492 37.037 0.00 0.00 36.63 0.98
780 2137 6.783708 TTTTTACCTGTTGGCCCATATTAG 57.216 37.500 0.00 0.00 36.63 1.73
781 2138 4.447138 TTACCTGTTGGCCCATATTAGG 57.553 45.455 0.00 1.97 36.63 2.69
782 2139 2.498441 ACCTGTTGGCCCATATTAGGA 58.502 47.619 0.00 0.00 36.63 2.94
783 2140 3.063650 ACCTGTTGGCCCATATTAGGAT 58.936 45.455 0.00 0.00 36.63 3.24
784 2141 4.247814 ACCTGTTGGCCCATATTAGGATA 58.752 43.478 0.00 0.00 36.63 2.59
785 2142 4.042934 ACCTGTTGGCCCATATTAGGATAC 59.957 45.833 0.00 0.00 36.63 2.24
786 2143 4.042809 CCTGTTGGCCCATATTAGGATACA 59.957 45.833 0.00 0.00 41.41 2.29
787 2144 5.281193 CCTGTTGGCCCATATTAGGATACAT 60.281 44.000 0.00 0.00 41.41 2.29
788 2145 6.069673 CCTGTTGGCCCATATTAGGATACATA 60.070 42.308 0.00 0.00 41.41 2.29
789 2146 7.336475 TGTTGGCCCATATTAGGATACATAA 57.664 36.000 0.00 0.00 41.41 1.90
790 2147 7.760607 TGTTGGCCCATATTAGGATACATAAA 58.239 34.615 0.00 0.00 41.41 1.40
791 2148 8.228206 TGTTGGCCCATATTAGGATACATAAAA 58.772 33.333 0.00 0.00 41.41 1.52
792 2149 9.084533 GTTGGCCCATATTAGGATACATAAAAA 57.915 33.333 0.00 0.00 41.41 1.94
819 2176 2.959507 AAAAGTTAATCGGGCCATGC 57.040 45.000 4.39 0.00 0.00 4.06
847 2204 3.570638 CGCATGCTCGCCCTTCAG 61.571 66.667 17.13 0.00 0.00 3.02
848 2205 3.207669 GCATGCTCGCCCTTCAGG 61.208 66.667 11.37 0.00 39.47 3.86
857 2214 4.748144 CCCTTCAGGCCCAGGCAC 62.748 72.222 11.50 0.00 44.11 5.01
896 2253 4.825252 CGGACCCGGCCCGTTTAG 62.825 72.222 21.04 0.00 41.91 1.85
898 2255 4.397832 GACCCGGCCCGTTTAGCA 62.398 66.667 0.85 0.00 0.00 3.49
899 2256 4.710167 ACCCGGCCCGTTTAGCAC 62.710 66.667 0.85 0.00 0.00 4.40
904 2261 4.097863 GCCCGTTTAGCACGTGCC 62.098 66.667 35.51 19.74 45.60 5.01
961 2318 3.489513 GGCCGGCCCAACTATCCT 61.490 66.667 36.64 0.00 0.00 3.24
962 2319 2.203209 GCCGGCCCAACTATCCTG 60.203 66.667 18.11 0.00 0.00 3.86
963 2320 2.510906 CCGGCCCAACTATCCTGG 59.489 66.667 0.00 0.00 0.00 4.45
964 2321 2.203209 CGGCCCAACTATCCTGGC 60.203 66.667 0.00 0.00 43.26 4.85
966 2323 2.195956 GCCCAACTATCCTGGCCC 59.804 66.667 0.00 0.00 37.94 5.80
967 2324 2.510906 CCCAACTATCCTGGCCCG 59.489 66.667 0.00 0.00 32.10 6.13
968 2325 2.375345 CCCAACTATCCTGGCCCGT 61.375 63.158 0.00 0.00 32.10 5.28
969 2326 1.607612 CCAACTATCCTGGCCCGTT 59.392 57.895 0.00 0.00 0.00 4.44
970 2327 0.034477 CCAACTATCCTGGCCCGTTT 60.034 55.000 0.00 0.00 0.00 3.60
971 2328 1.094785 CAACTATCCTGGCCCGTTTG 58.905 55.000 0.00 0.00 0.00 2.93
972 2329 0.034477 AACTATCCTGGCCCGTTTGG 60.034 55.000 0.00 0.00 37.09 3.28
982 2339 2.702847 CCCGTTTGGCCAGCTATAC 58.297 57.895 5.11 0.00 0.00 1.47
983 2340 0.180406 CCCGTTTGGCCAGCTATACT 59.820 55.000 5.11 0.00 0.00 2.12
984 2341 1.583054 CCGTTTGGCCAGCTATACTC 58.417 55.000 5.11 0.00 0.00 2.59
985 2342 1.583054 CGTTTGGCCAGCTATACTCC 58.417 55.000 5.11 0.00 0.00 3.85
986 2343 1.810412 CGTTTGGCCAGCTATACTCCC 60.810 57.143 5.11 0.00 0.00 4.30
987 2344 0.843984 TTTGGCCAGCTATACTCCCC 59.156 55.000 5.11 0.00 0.00 4.81
988 2345 0.030092 TTGGCCAGCTATACTCCCCT 60.030 55.000 5.11 0.00 0.00 4.79
989 2346 0.471971 TGGCCAGCTATACTCCCCTC 60.472 60.000 0.00 0.00 0.00 4.30
1114 2472 1.686741 GGTCGGAGGAGGAGATGTTCT 60.687 57.143 0.00 0.00 0.00 3.01
1128 2486 5.396884 GGAGATGTTCTTAGCCACCATAGTT 60.397 44.000 0.00 0.00 0.00 2.24
1200 2558 2.656002 CCAGAGGAGAAGACCATCGTA 58.344 52.381 0.00 0.00 0.00 3.43
1415 2776 2.261671 CTCAGTCGAACCCGTGGG 59.738 66.667 2.58 2.58 42.03 4.61
1626 3003 2.134789 AATTCACCACAGGCATCCTC 57.865 50.000 0.00 0.00 0.00 3.71
1728 3111 0.528017 TCGAGCTCTGCGTCTTCAAT 59.472 50.000 12.85 0.00 0.00 2.57
1812 3198 1.522900 ATACCCAGTTCCCCATCCTG 58.477 55.000 0.00 0.00 0.00 3.86
1881 3267 1.466167 GTCGACTACTTGAGCGGTGTA 59.534 52.381 8.70 0.00 0.00 2.90
1943 3329 1.125093 TTCGTGCCTTTCCCTGGAGA 61.125 55.000 0.00 0.00 0.00 3.71
2101 3514 1.077501 ATTGATGGCTGGTGTCCGG 60.078 57.895 0.00 0.00 0.00 5.14
2281 3710 0.905357 CTGTCTTCCCGAGTTCCCAT 59.095 55.000 0.00 0.00 0.00 4.00
2325 3754 0.254178 CCCTATGCTGCCTGTTGAGT 59.746 55.000 0.00 0.00 0.00 3.41
2389 3863 2.259917 TGAACCAGGAAGATCTGCAGA 58.740 47.619 20.79 20.79 33.64 4.26
2401 3875 6.699642 GGAAGATCTGCAGACATCTACTAAAC 59.300 42.308 20.97 7.14 0.00 2.01
2404 3878 7.208777 AGATCTGCAGACATCTACTAAACATG 58.791 38.462 20.97 0.00 0.00 3.21
2555 4056 9.566432 AGGTAAGCTCTCTTAATATTCAAATGG 57.434 33.333 0.00 0.00 36.62 3.16
2833 4913 0.388520 GACATGCTTTTTGGGACGGC 60.389 55.000 0.00 0.00 0.00 5.68
2845 4925 1.153686 GGACGGCGGGAGTAGTTTC 60.154 63.158 13.24 0.00 0.00 2.78
2847 4927 1.880819 GACGGCGGGAGTAGTTTCCA 61.881 60.000 13.24 0.00 39.09 3.53
2879 5155 4.230733 TCTCTCTATGGGTCTCTTTGGAGA 59.769 45.833 0.00 0.00 45.30 3.71
3218 5777 3.070302 GTCAAGTTGTCCTCCAGAGTCTT 59.930 47.826 2.11 0.00 0.00 3.01
3394 5961 6.886459 TGCTCTTCTAAAGCATAAAACTGGAT 59.114 34.615 0.00 0.00 44.51 3.41
3395 5962 8.046708 TGCTCTTCTAAAGCATAAAACTGGATA 58.953 33.333 0.00 0.00 44.51 2.59
3396 5963 8.338986 GCTCTTCTAAAGCATAAAACTGGATAC 58.661 37.037 0.00 0.00 39.61 2.24
3397 5964 9.606631 CTCTTCTAAAGCATAAAACTGGATACT 57.393 33.333 0.00 0.00 37.61 2.12
3398 5965 9.383519 TCTTCTAAAGCATAAAACTGGATACTG 57.616 33.333 0.00 0.00 42.06 2.74
3399 5966 9.383519 CTTCTAAAGCATAAAACTGGATACTGA 57.616 33.333 0.00 0.00 39.15 3.41
3400 5967 9.905713 TTCTAAAGCATAAAACTGGATACTGAT 57.094 29.630 0.00 0.00 39.15 2.90
3529 6123 4.149598 GTTGGGTTAGTTTGGGTCAATCT 58.850 43.478 0.00 0.00 0.00 2.40
3638 6232 0.112995 AAAGCCATTCTCCCTGCACA 59.887 50.000 0.00 0.00 0.00 4.57
3639 6233 0.323178 AAGCCATTCTCCCTGCACAG 60.323 55.000 0.00 0.00 0.00 3.66
3722 6316 4.533707 TCTTCCTCTTGATTCTGGTGACAT 59.466 41.667 0.00 0.00 41.51 3.06
3771 6365 2.245159 TGCCTCATCCGACATCATTC 57.755 50.000 0.00 0.00 0.00 2.67
3782 6376 2.430694 CGACATCATTCCACCTGGACTA 59.569 50.000 0.00 0.00 45.39 2.59
3844 6438 0.618680 TGCCTCTAGTCCTGTGCCAT 60.619 55.000 0.00 0.00 0.00 4.40
3902 6568 4.256180 CGGCCAGCCCCCTATGTC 62.256 72.222 2.24 0.00 0.00 3.06
3964 6630 1.901833 ACCCCAATCCAATGCTGTTTC 59.098 47.619 0.00 0.00 0.00 2.78
4121 6963 1.823295 CAGTGATACCCCGGGACAG 59.177 63.158 26.32 8.13 0.00 3.51
4185 7039 6.211515 AGAAAGCTTAAGTTTGCAATGTGAG 58.788 36.000 12.15 0.00 0.00 3.51
4252 7106 3.132111 GGTTGGTCACACAAAAGATGGTT 59.868 43.478 0.00 0.00 31.17 3.67
4267 7132 6.484364 AAGATGGTTTTTGTCCTCAATGTT 57.516 33.333 0.00 0.00 33.32 2.71
4268 7133 5.846203 AGATGGTTTTTGTCCTCAATGTTG 58.154 37.500 0.00 0.00 33.32 3.33
4269 7134 3.791245 TGGTTTTTGTCCTCAATGTTGC 58.209 40.909 0.00 0.00 33.32 4.17
4270 7135 3.196469 TGGTTTTTGTCCTCAATGTTGCA 59.804 39.130 0.00 0.00 33.32 4.08
4271 7136 3.555547 GGTTTTTGTCCTCAATGTTGCAC 59.444 43.478 0.00 0.00 33.32 4.57
4272 7137 4.432712 GTTTTTGTCCTCAATGTTGCACT 58.567 39.130 0.00 0.00 33.32 4.40
4273 7138 3.713858 TTTGTCCTCAATGTTGCACTG 57.286 42.857 0.00 0.00 33.32 3.66
4276 7152 4.284829 TGTCCTCAATGTTGCACTGATA 57.715 40.909 0.00 0.00 0.00 2.15
4314 7190 4.279671 GGATGAGGATGTGTACTACCTCTG 59.720 50.000 19.94 0.00 46.14 3.35
4368 7244 4.969359 CCCTCCGTCCCATAATATAGGAAT 59.031 45.833 0.00 0.00 0.00 3.01
4493 7428 8.099537 ACATGTTCTGGATCCTGTAATCATATC 58.900 37.037 14.23 0.00 0.00 1.63
4497 7432 9.566432 GTTCTGGATCCTGTAATCATATCTTTT 57.434 33.333 14.23 0.00 0.00 2.27
4552 7487 9.973450 GAAAGCCTTCTCTTTTTATTCTTTCTT 57.027 29.630 0.00 0.00 36.50 2.52
4662 7597 1.892474 GCACAAGCCCAAAAGGATGTA 59.108 47.619 0.00 0.00 35.95 2.29
4664 7599 3.676873 GCACAAGCCCAAAAGGATGTATG 60.677 47.826 0.00 0.00 35.95 2.39
4730 7665 7.065683 GGATGTCTGTTTTGTTTGGATTTTGTT 59.934 33.333 0.00 0.00 0.00 2.83
4744 7679 3.926821 TTTTGTTCGTTTAGGGATGGC 57.073 42.857 0.00 0.00 0.00 4.40
4745 7680 2.570415 TTGTTCGTTTAGGGATGGCA 57.430 45.000 0.00 0.00 0.00 4.92
4746 7681 2.799126 TGTTCGTTTAGGGATGGCAT 57.201 45.000 0.00 0.00 0.00 4.40
4747 7682 3.080300 TGTTCGTTTAGGGATGGCATT 57.920 42.857 0.00 0.00 0.00 3.56
4748 7683 4.223556 TGTTCGTTTAGGGATGGCATTA 57.776 40.909 0.00 0.00 0.00 1.90
4749 7684 4.590918 TGTTCGTTTAGGGATGGCATTAA 58.409 39.130 0.00 0.00 0.00 1.40
4750 7685 5.010933 TGTTCGTTTAGGGATGGCATTAAA 58.989 37.500 0.00 0.00 0.00 1.52
4751 7686 5.477291 TGTTCGTTTAGGGATGGCATTAAAA 59.523 36.000 0.00 0.00 0.00 1.52
4758 7693 4.623863 AGGGATGGCATTAAAAGGATGTT 58.376 39.130 0.00 0.00 0.00 2.71
4778 7713 8.026026 GGATGTTTGTTTTGTTTGGATTTTGTT 58.974 29.630 0.00 0.00 0.00 2.83
4779 7714 9.404348 GATGTTTGTTTTGTTTGGATTTTGTTT 57.596 25.926 0.00 0.00 0.00 2.83
4791 7726 5.994250 TGGATTTTGTTTGTTTGGGAATGA 58.006 33.333 0.00 0.00 0.00 2.57
4831 7766 0.101219 GATTTCTGAATGTGGCCGGC 59.899 55.000 21.18 21.18 0.00 6.13
4843 7778 2.275380 GGCCGGCCACATCTTGTTT 61.275 57.895 40.73 0.00 35.81 2.83
4860 7795 2.548904 TGTTTGGCTGCATGCAATTTTC 59.451 40.909 22.88 11.02 45.15 2.29
4892 7827 7.286508 CAACAAAGATGTAGATAATGCTAGCG 58.713 38.462 10.77 0.00 39.40 4.26
4912 7847 2.184322 CATAGTCACGCCAGCGGT 59.816 61.111 17.33 0.00 44.69 5.68
4959 7894 1.253100 CCAACGGCCTACAAAATGGT 58.747 50.000 0.00 0.00 0.00 3.55
4963 7898 2.365582 ACGGCCTACAAAATGGTCATC 58.634 47.619 0.00 0.00 0.00 2.92
4967 7902 2.666317 CCTACAAAATGGTCATCCCCC 58.334 52.381 0.00 0.00 0.00 5.40
4992 7927 1.448922 AACGCCGCCAACAAAGCTAA 61.449 50.000 0.00 0.00 0.00 3.09
4993 7928 1.154225 CGCCGCCAACAAAGCTAAG 60.154 57.895 0.00 0.00 0.00 2.18
4994 7929 1.444383 GCCGCCAACAAAGCTAAGC 60.444 57.895 0.00 0.00 0.00 3.09
4995 7930 1.866853 GCCGCCAACAAAGCTAAGCT 61.867 55.000 0.00 0.00 42.56 3.74
4996 7931 1.448985 CCGCCAACAAAGCTAAGCTA 58.551 50.000 0.00 0.00 38.25 3.32
5005 7940 2.924290 CAAAGCTAAGCTAGTGACCGAC 59.076 50.000 0.00 0.00 38.25 4.79
5009 7944 6.399758 AAGCTAAGCTAGTGACCGACACAG 62.400 50.000 13.32 9.93 44.56 3.66
5016 7951 2.432119 TGACCGACACAGTAGCCAA 58.568 52.632 0.00 0.00 0.00 4.52
5017 7952 0.753867 TGACCGACACAGTAGCCAAA 59.246 50.000 0.00 0.00 0.00 3.28
5018 7953 1.145803 GACCGACACAGTAGCCAAAC 58.854 55.000 0.00 0.00 0.00 2.93
5019 7954 0.756903 ACCGACACAGTAGCCAAACT 59.243 50.000 0.00 0.00 0.00 2.66
5020 7955 1.140252 ACCGACACAGTAGCCAAACTT 59.860 47.619 0.00 0.00 0.00 2.66
5021 7956 1.798813 CCGACACAGTAGCCAAACTTC 59.201 52.381 0.00 0.00 0.00 3.01
5022 7957 2.479837 CGACACAGTAGCCAAACTTCA 58.520 47.619 0.00 0.00 0.00 3.02
5023 7958 2.869801 CGACACAGTAGCCAAACTTCAA 59.130 45.455 0.00 0.00 0.00 2.69
5024 7959 3.311322 CGACACAGTAGCCAAACTTCAAA 59.689 43.478 0.00 0.00 0.00 2.69
5025 7960 4.201871 CGACACAGTAGCCAAACTTCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
5026 7961 5.505654 CGACACAGTAGCCAAACTTCAAAAT 60.506 40.000 0.00 0.00 0.00 1.82
5027 7962 5.591099 ACACAGTAGCCAAACTTCAAAATG 58.409 37.500 0.00 0.00 0.00 2.32
5028 7963 4.984161 CACAGTAGCCAAACTTCAAAATGG 59.016 41.667 0.00 0.00 36.00 3.16
5029 7964 4.649218 ACAGTAGCCAAACTTCAAAATGGT 59.351 37.500 0.00 0.00 35.34 3.55
5030 7965 5.221244 ACAGTAGCCAAACTTCAAAATGGTC 60.221 40.000 0.00 0.00 35.34 4.02
5031 7966 4.892934 AGTAGCCAAACTTCAAAATGGTCA 59.107 37.500 0.00 0.00 35.34 4.02
5032 7967 4.961438 AGCCAAACTTCAAAATGGTCAT 57.039 36.364 0.00 0.00 35.34 3.06
5033 7968 4.886579 AGCCAAACTTCAAAATGGTCATC 58.113 39.130 0.00 0.00 35.34 2.92
5034 7969 3.996363 GCCAAACTTCAAAATGGTCATCC 59.004 43.478 0.00 0.00 35.34 3.51
5035 7970 4.568956 CCAAACTTCAAAATGGTCATCCC 58.431 43.478 0.00 0.00 0.00 3.85
5036 7971 4.563374 CCAAACTTCAAAATGGTCATCCCC 60.563 45.833 0.00 0.00 0.00 4.81
5037 7972 2.820178 ACTTCAAAATGGTCATCCCCC 58.180 47.619 0.00 0.00 0.00 5.40
5038 7973 2.111613 ACTTCAAAATGGTCATCCCCCA 59.888 45.455 0.00 0.00 36.16 4.96
5039 7974 2.530460 TCAAAATGGTCATCCCCCAG 57.470 50.000 0.00 0.00 34.92 4.45
5040 7975 1.715931 TCAAAATGGTCATCCCCCAGT 59.284 47.619 0.00 0.00 34.92 4.00
5041 7976 2.111613 TCAAAATGGTCATCCCCCAGTT 59.888 45.455 0.00 0.00 41.68 3.16
5042 7977 3.274281 AAAATGGTCATCCCCCAGTTT 57.726 42.857 0.00 0.00 43.31 2.66
5043 7978 4.093011 CAAAATGGTCATCCCCCAGTTTA 58.907 43.478 4.76 0.00 45.51 2.01
5044 7979 4.412060 AAATGGTCATCCCCCAGTTTAA 57.588 40.909 0.00 0.00 36.96 1.52
5045 7980 2.891191 TGGTCATCCCCCAGTTTAAC 57.109 50.000 0.00 0.00 0.00 2.01
5046 7981 1.003812 TGGTCATCCCCCAGTTTAACG 59.996 52.381 0.00 0.00 0.00 3.18
5047 7982 1.092348 GTCATCCCCCAGTTTAACGC 58.908 55.000 0.00 0.00 0.00 4.84
5048 7983 0.034863 TCATCCCCCAGTTTAACGCC 60.035 55.000 0.00 0.00 0.00 5.68
5049 7984 1.078001 ATCCCCCAGTTTAACGCCG 60.078 57.895 0.00 0.00 0.00 6.46
5050 7985 3.436924 CCCCCAGTTTAACGCCGC 61.437 66.667 0.00 0.00 0.00 6.53
5051 7986 3.436924 CCCCAGTTTAACGCCGCC 61.437 66.667 0.00 0.00 0.00 6.13
5052 7987 2.670251 CCCAGTTTAACGCCGCCA 60.670 61.111 0.00 0.00 0.00 5.69
5053 7988 2.262303 CCCAGTTTAACGCCGCCAA 61.262 57.895 0.00 0.00 0.00 4.52
5054 7989 1.081708 CCAGTTTAACGCCGCCAAC 60.082 57.895 0.00 0.00 0.00 3.77
5055 7990 1.649815 CAGTTTAACGCCGCCAACA 59.350 52.632 0.00 0.00 0.00 3.33
5056 7991 0.029567 CAGTTTAACGCCGCCAACAA 59.970 50.000 0.00 0.00 0.00 2.83
5057 7992 0.739561 AGTTTAACGCCGCCAACAAA 59.260 45.000 0.00 0.00 0.00 2.83
5058 7993 1.125270 GTTTAACGCCGCCAACAAAG 58.875 50.000 0.00 0.00 0.00 2.77
5059 7994 0.595310 TTTAACGCCGCCAACAAAGC 60.595 50.000 0.00 0.00 0.00 3.51
5060 7995 1.448922 TTAACGCCGCCAACAAAGCT 61.449 50.000 0.00 0.00 0.00 3.74
5061 7996 0.603172 TAACGCCGCCAACAAAGCTA 60.603 50.000 0.00 0.00 0.00 3.32
5062 7997 1.448922 AACGCCGCCAACAAAGCTAA 61.449 50.000 0.00 0.00 0.00 3.09
5063 7998 1.154225 CGCCGCCAACAAAGCTAAG 60.154 57.895 0.00 0.00 0.00 2.18
5064 7999 1.444383 GCCGCCAACAAAGCTAAGC 60.444 57.895 0.00 0.00 0.00 3.09
5065 8000 1.866853 GCCGCCAACAAAGCTAAGCT 61.867 55.000 0.00 0.00 42.56 3.74
5066 8001 1.448985 CCGCCAACAAAGCTAAGCTA 58.551 50.000 0.00 0.00 38.25 3.32
5067 8002 1.398390 CCGCCAACAAAGCTAAGCTAG 59.602 52.381 0.00 0.00 38.25 3.42
5068 8003 2.076863 CGCCAACAAAGCTAAGCTAGT 58.923 47.619 0.00 0.00 38.25 2.57
5069 8004 2.159653 CGCCAACAAAGCTAAGCTAGTG 60.160 50.000 0.00 0.00 38.25 2.74
5070 8005 3.074412 GCCAACAAAGCTAAGCTAGTGA 58.926 45.455 0.00 0.00 38.25 3.41
5071 8006 3.120165 GCCAACAAAGCTAAGCTAGTGAC 60.120 47.826 0.00 0.00 38.25 3.67
5072 8007 3.437049 CCAACAAAGCTAAGCTAGTGACC 59.563 47.826 0.00 0.00 38.25 4.02
5073 8008 2.960819 ACAAAGCTAAGCTAGTGACCG 58.039 47.619 0.00 0.00 38.25 4.79
5074 8009 2.561419 ACAAAGCTAAGCTAGTGACCGA 59.439 45.455 0.00 0.00 38.25 4.69
5075 8010 2.924290 CAAAGCTAAGCTAGTGACCGAC 59.076 50.000 0.00 0.00 38.25 4.79
5076 8011 1.835494 AGCTAAGCTAGTGACCGACA 58.165 50.000 0.00 0.00 36.99 4.35
5077 8012 2.094649 AAGCTAAGCTAGTGACCGACAC 60.095 50.000 0.00 4.91 43.36 3.67
5078 8013 4.620941 AAGCTAAGCTAGTGACCGACACA 61.621 47.826 13.32 0.00 44.56 3.72
5079 8014 6.399758 AAGCTAAGCTAGTGACCGACACAG 62.400 50.000 13.32 9.93 44.56 3.66
5085 8020 4.184439 TGACCGACACAGTAGCCA 57.816 55.556 0.00 0.00 0.00 4.75
5106 8041 6.313658 AGCCAAACTTCAAAATGAACAAGTTC 59.686 34.615 6.01 6.01 37.96 3.01
5113 8048 8.241367 ACTTCAAAATGAACAAGTTCTTTACGT 58.759 29.630 13.49 0.00 40.14 3.57
5159 8224 1.945819 GCGAACATCTCTTTCTGCCCA 60.946 52.381 0.00 0.00 0.00 5.36
5164 8229 4.246712 ACATCTCTTTCTGCCCATTCAT 57.753 40.909 0.00 0.00 0.00 2.57
5185 8250 1.625818 GAACCAAGCCTTCCTCTCTGA 59.374 52.381 0.00 0.00 0.00 3.27
5206 8271 4.332543 TGATTCATATCAAGTCACCAACGC 59.667 41.667 0.00 0.00 37.83 4.84
5257 8322 1.899814 TCTCAAGCGTGGGACAATACT 59.100 47.619 0.00 0.00 44.16 2.12
5283 8348 1.135972 CGCTCTTGTTGAATGAACCCG 60.136 52.381 0.00 0.00 33.07 5.28
5298 8363 2.044123 ACCCGCATCTCTTTTGGATC 57.956 50.000 0.00 0.00 0.00 3.36
5310 8375 2.488204 TTTGGATCGAGTTGATGCCA 57.512 45.000 9.23 8.08 44.25 4.92
5358 8423 4.470462 CAAACTTCCTTCGCTCATGAAAG 58.530 43.478 0.00 0.00 0.00 2.62
5438 8504 3.387962 TGGCCTATCTCCATCAACTCTT 58.612 45.455 3.32 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 58 9.889128 TTCTTTTGTTTCATTTTTCTTCTCCAT 57.111 25.926 0.00 0.00 0.00 3.41
559 1916 2.233605 TTAGGATGGGACGTGCCGTG 62.234 60.000 26.87 0.00 41.37 4.94
560 1917 1.335132 ATTAGGATGGGACGTGCCGT 61.335 55.000 22.00 22.00 45.10 5.68
561 1918 0.600255 GATTAGGATGGGACGTGCCG 60.600 60.000 21.93 0.00 37.63 5.69
562 1919 0.600255 CGATTAGGATGGGACGTGCC 60.600 60.000 20.69 20.69 0.00 5.01
563 1920 0.104304 ACGATTAGGATGGGACGTGC 59.896 55.000 0.00 0.00 32.93 5.34
564 1921 1.852942 CACGATTAGGATGGGACGTG 58.147 55.000 0.00 0.00 43.10 4.49
565 1922 0.104304 GCACGATTAGGATGGGACGT 59.896 55.000 0.00 0.00 34.40 4.34
566 1923 0.600255 GGCACGATTAGGATGGGACG 60.600 60.000 0.00 0.00 0.00 4.79
567 1924 0.759346 AGGCACGATTAGGATGGGAC 59.241 55.000 0.00 0.00 0.00 4.46
568 1925 0.758734 CAGGCACGATTAGGATGGGA 59.241 55.000 0.00 0.00 0.00 4.37
569 1926 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
570 1927 0.886490 GCCAGGCACGATTAGGATGG 60.886 60.000 6.55 0.00 0.00 3.51
571 1928 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.000 11.22 0.00 31.71 3.51
572 1929 2.220953 TGCCAGGCACGATTAGGAT 58.779 52.632 11.22 0.00 31.71 3.24
573 1930 3.720494 TGCCAGGCACGATTAGGA 58.280 55.556 11.22 0.00 31.71 2.94
599 1956 0.034896 AATAATCGTGCCTAGGCGGG 59.965 55.000 28.28 21.60 45.51 6.13
600 1957 2.736144 TAATAATCGTGCCTAGGCGG 57.264 50.000 28.28 21.97 45.51 6.13
601 1958 3.789756 CGTATAATAATCGTGCCTAGGCG 59.210 47.826 28.28 15.51 45.51 5.52
602 1959 4.110482 CCGTATAATAATCGTGCCTAGGC 58.890 47.826 27.71 27.71 42.35 3.93
603 1960 4.159135 ACCCGTATAATAATCGTGCCTAGG 59.841 45.833 3.67 3.67 0.00 3.02
604 1961 5.320549 ACCCGTATAATAATCGTGCCTAG 57.679 43.478 0.00 0.00 0.00 3.02
605 1962 4.142622 CGACCCGTATAATAATCGTGCCTA 60.143 45.833 0.00 0.00 0.00 3.93
606 1963 3.366679 CGACCCGTATAATAATCGTGCCT 60.367 47.826 0.00 0.00 0.00 4.75
607 1964 2.919229 CGACCCGTATAATAATCGTGCC 59.081 50.000 0.00 0.00 0.00 5.01
608 1965 3.568538 ACGACCCGTATAATAATCGTGC 58.431 45.455 0.00 0.00 40.95 5.34
610 1967 3.568538 GCACGACCCGTATAATAATCGT 58.431 45.455 0.00 0.00 43.08 3.73
611 1968 2.919229 GGCACGACCCGTATAATAATCG 59.081 50.000 0.00 0.00 38.32 3.34
666 2023 1.566018 GATTAGCATACGGGCCGTGC 61.566 60.000 39.80 33.49 41.39 5.34
667 2024 1.282248 CGATTAGCATACGGGCCGTG 61.282 60.000 39.80 25.77 41.39 4.94
668 2025 1.006571 CGATTAGCATACGGGCCGT 60.007 57.895 35.91 35.91 44.35 5.68
669 2026 1.736645 CCGATTAGCATACGGGCCG 60.737 63.158 27.06 27.06 42.48 6.13
670 2027 4.278956 CCGATTAGCATACGGGCC 57.721 61.111 0.00 0.00 42.48 5.80
673 2030 1.736645 CGGCCCGATTAGCATACGG 60.737 63.158 0.00 0.00 45.24 4.02
674 2031 1.736645 CCGGCCCGATTAGCATACG 60.737 63.158 3.71 0.00 0.00 3.06
675 2032 2.033194 GCCGGCCCGATTAGCATAC 61.033 63.158 18.11 0.00 0.00 2.39
676 2033 2.345991 GCCGGCCCGATTAGCATA 59.654 61.111 18.11 0.00 0.00 3.14
677 2034 4.643387 GGCCGGCCCGATTAGCAT 62.643 66.667 36.64 0.00 0.00 3.79
700 2057 3.995506 ATTAGTGGGCCTGGCGTGC 62.996 63.158 13.40 4.75 0.00 5.34
701 2058 1.819632 GATTAGTGGGCCTGGCGTG 60.820 63.158 13.40 0.00 0.00 5.34
702 2059 0.689745 TAGATTAGTGGGCCTGGCGT 60.690 55.000 13.40 0.00 0.00 5.68
703 2060 0.249911 GTAGATTAGTGGGCCTGGCG 60.250 60.000 13.40 0.00 0.00 5.69
704 2061 0.108774 GGTAGATTAGTGGGCCTGGC 59.891 60.000 11.05 11.05 0.00 4.85
705 2062 1.694696 GAGGTAGATTAGTGGGCCTGG 59.305 57.143 4.53 0.00 0.00 4.45
706 2063 1.694696 GGAGGTAGATTAGTGGGCCTG 59.305 57.143 4.53 0.00 0.00 4.85
707 2064 1.581149 AGGAGGTAGATTAGTGGGCCT 59.419 52.381 4.53 0.00 0.00 5.19
708 2065 2.104669 AGGAGGTAGATTAGTGGGCC 57.895 55.000 0.00 0.00 0.00 5.80
709 2066 5.827326 AAATAGGAGGTAGATTAGTGGGC 57.173 43.478 0.00 0.00 0.00 5.36
710 2067 5.998363 GCAAAATAGGAGGTAGATTAGTGGG 59.002 44.000 0.00 0.00 0.00 4.61
711 2068 5.696724 CGCAAAATAGGAGGTAGATTAGTGG 59.303 44.000 0.00 0.00 0.00 4.00
712 2069 5.177696 GCGCAAAATAGGAGGTAGATTAGTG 59.822 44.000 0.30 0.00 0.00 2.74
713 2070 5.163343 TGCGCAAAATAGGAGGTAGATTAGT 60.163 40.000 8.16 0.00 0.00 2.24
714 2071 5.297547 TGCGCAAAATAGGAGGTAGATTAG 58.702 41.667 8.16 0.00 0.00 1.73
715 2072 5.284861 TGCGCAAAATAGGAGGTAGATTA 57.715 39.130 8.16 0.00 0.00 1.75
716 2073 4.150897 TGCGCAAAATAGGAGGTAGATT 57.849 40.909 8.16 0.00 0.00 2.40
717 2074 3.838244 TGCGCAAAATAGGAGGTAGAT 57.162 42.857 8.16 0.00 0.00 1.98
718 2075 3.838244 ATGCGCAAAATAGGAGGTAGA 57.162 42.857 17.11 0.00 0.00 2.59
719 2076 3.876914 TCAATGCGCAAAATAGGAGGTAG 59.123 43.478 17.11 0.00 0.00 3.18
720 2077 3.876914 CTCAATGCGCAAAATAGGAGGTA 59.123 43.478 17.11 0.00 0.00 3.08
721 2078 2.684881 CTCAATGCGCAAAATAGGAGGT 59.315 45.455 17.11 0.00 0.00 3.85
722 2079 2.542411 GCTCAATGCGCAAAATAGGAGG 60.542 50.000 17.11 0.00 0.00 4.30
723 2080 2.724349 GCTCAATGCGCAAAATAGGAG 58.276 47.619 17.11 15.51 0.00 3.69
724 2081 2.849880 GCTCAATGCGCAAAATAGGA 57.150 45.000 17.11 5.01 0.00 2.94
746 2103 7.156000 GCCAACAGGTAAAAATAGGCTAAAAA 58.844 34.615 0.00 0.00 37.89 1.94
747 2104 6.295405 GGCCAACAGGTAAAAATAGGCTAAAA 60.295 38.462 0.00 0.00 40.61 1.52
748 2105 5.186215 GGCCAACAGGTAAAAATAGGCTAAA 59.814 40.000 0.00 0.00 40.61 1.85
749 2106 4.707934 GGCCAACAGGTAAAAATAGGCTAA 59.292 41.667 0.00 0.00 40.61 3.09
750 2107 4.274978 GGCCAACAGGTAAAAATAGGCTA 58.725 43.478 0.00 0.00 40.61 3.93
751 2108 3.096852 GGCCAACAGGTAAAAATAGGCT 58.903 45.455 0.00 0.00 40.61 4.58
752 2109 2.167693 GGGCCAACAGGTAAAAATAGGC 59.832 50.000 4.39 0.00 40.08 3.93
753 2110 3.436243 TGGGCCAACAGGTAAAAATAGG 58.564 45.455 2.13 0.00 0.00 2.57
754 2111 6.976934 ATATGGGCCAACAGGTAAAAATAG 57.023 37.500 11.89 0.00 0.00 1.73
755 2112 7.507616 CCTAATATGGGCCAACAGGTAAAAATA 59.492 37.037 11.89 0.00 0.00 1.40
756 2113 6.326323 CCTAATATGGGCCAACAGGTAAAAAT 59.674 38.462 11.89 0.00 0.00 1.82
757 2114 5.659079 CCTAATATGGGCCAACAGGTAAAAA 59.341 40.000 11.89 0.00 0.00 1.94
758 2115 5.044030 TCCTAATATGGGCCAACAGGTAAAA 60.044 40.000 11.89 0.00 0.00 1.52
759 2116 4.479056 TCCTAATATGGGCCAACAGGTAAA 59.521 41.667 11.89 0.00 0.00 2.01
760 2117 4.048600 TCCTAATATGGGCCAACAGGTAA 58.951 43.478 11.89 0.00 0.00 2.85
761 2118 3.671079 TCCTAATATGGGCCAACAGGTA 58.329 45.455 11.89 0.00 0.00 3.08
762 2119 2.498441 TCCTAATATGGGCCAACAGGT 58.502 47.619 11.89 0.00 0.00 4.00
763 2120 3.814504 ATCCTAATATGGGCCAACAGG 57.185 47.619 11.89 14.64 0.00 4.00
764 2121 5.241403 TGTATCCTAATATGGGCCAACAG 57.759 43.478 11.89 5.14 0.00 3.16
765 2122 5.858876 ATGTATCCTAATATGGGCCAACA 57.141 39.130 11.89 7.42 0.00 3.33
766 2123 8.644374 TTTTATGTATCCTAATATGGGCCAAC 57.356 34.615 11.89 0.35 0.00 3.77
799 2156 2.093711 GGCATGGCCCGATTAACTTTTT 60.094 45.455 8.35 0.00 44.06 1.94
800 2157 1.480545 GGCATGGCCCGATTAACTTTT 59.519 47.619 8.35 0.00 44.06 2.27
801 2158 1.111277 GGCATGGCCCGATTAACTTT 58.889 50.000 8.35 0.00 44.06 2.66
802 2159 2.807247 GGCATGGCCCGATTAACTT 58.193 52.632 8.35 0.00 44.06 2.66
803 2160 4.579127 GGCATGGCCCGATTAACT 57.421 55.556 8.35 0.00 44.06 2.24
830 2187 3.570638 CTGAAGGGCGAGCATGCG 61.571 66.667 13.01 0.00 35.06 4.73
831 2188 3.207669 CCTGAAGGGCGAGCATGC 61.208 66.667 10.51 10.51 0.00 4.06
840 2197 4.748144 GTGCCTGGGCCTGAAGGG 62.748 72.222 12.58 4.03 41.09 3.95
881 2238 4.397832 TGCTAAACGGGCCGGGTC 62.398 66.667 31.78 14.28 0.00 4.46
882 2239 4.710167 GTGCTAAACGGGCCGGGT 62.710 66.667 31.78 19.63 0.00 5.28
944 2301 3.489513 AGGATAGTTGGGCCGGCC 61.490 66.667 38.57 38.57 0.00 6.13
945 2302 2.203209 CAGGATAGTTGGGCCGGC 60.203 66.667 21.18 21.18 0.00 6.13
946 2303 2.510906 CCAGGATAGTTGGGCCGG 59.489 66.667 0.00 0.00 31.87 6.13
947 2304 2.203209 GCCAGGATAGTTGGGCCG 60.203 66.667 0.00 0.00 40.55 6.13
950 2307 1.921869 AACGGGCCAGGATAGTTGGG 61.922 60.000 8.08 0.00 36.19 4.12
951 2308 0.034477 AAACGGGCCAGGATAGTTGG 60.034 55.000 8.08 0.00 38.78 3.77
952 2309 1.094785 CAAACGGGCCAGGATAGTTG 58.905 55.000 8.08 0.00 0.00 3.16
953 2310 0.034477 CCAAACGGGCCAGGATAGTT 60.034 55.000 8.08 0.00 0.00 2.24
954 2311 1.607612 CCAAACGGGCCAGGATAGT 59.392 57.895 8.08 0.00 0.00 2.12
955 2312 4.559502 CCAAACGGGCCAGGATAG 57.440 61.111 8.08 0.00 0.00 2.08
964 2321 0.180406 AGTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
965 2322 1.583054 GAGTATAGCTGGCCAAACGG 58.417 55.000 7.01 0.00 0.00 4.44
966 2323 1.583054 GGAGTATAGCTGGCCAAACG 58.417 55.000 7.01 0.00 0.00 3.60
967 2324 1.477014 GGGGAGTATAGCTGGCCAAAC 60.477 57.143 7.01 1.16 0.00 2.93
968 2325 0.843984 GGGGAGTATAGCTGGCCAAA 59.156 55.000 7.01 0.00 0.00 3.28
969 2326 0.030092 AGGGGAGTATAGCTGGCCAA 60.030 55.000 7.01 0.00 0.00 4.52
970 2327 0.471971 GAGGGGAGTATAGCTGGCCA 60.472 60.000 4.71 4.71 0.00 5.36
971 2328 1.195442 GGAGGGGAGTATAGCTGGCC 61.195 65.000 0.00 0.00 0.00 5.36
972 2329 0.178918 AGGAGGGGAGTATAGCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
973 2330 1.551329 GGAGGAGGGGAGTATAGCTGG 60.551 61.905 0.00 0.00 0.00 4.85
974 2331 1.888826 CGGAGGAGGGGAGTATAGCTG 60.889 61.905 0.00 0.00 0.00 4.24
975 2332 0.406361 CGGAGGAGGGGAGTATAGCT 59.594 60.000 0.00 0.00 0.00 3.32
976 2333 1.252215 GCGGAGGAGGGGAGTATAGC 61.252 65.000 0.00 0.00 0.00 2.97
977 2334 0.612453 GGCGGAGGAGGGGAGTATAG 60.612 65.000 0.00 0.00 0.00 1.31
978 2335 1.463824 GGCGGAGGAGGGGAGTATA 59.536 63.158 0.00 0.00 0.00 1.47
979 2336 2.201771 GGCGGAGGAGGGGAGTAT 59.798 66.667 0.00 0.00 0.00 2.12
980 2337 4.153330 GGGCGGAGGAGGGGAGTA 62.153 72.222 0.00 0.00 0.00 2.59
1096 2454 2.534042 AAGAACATCTCCTCCTCCGA 57.466 50.000 0.00 0.00 0.00 4.55
1114 2472 1.087202 CGCGCAACTATGGTGGCTAA 61.087 55.000 8.75 0.00 40.10 3.09
1728 3111 3.943671 TTCCACTCTTTGGTCTTGGAA 57.056 42.857 0.00 0.00 46.97 3.53
1812 3198 1.348036 AGCACCTCCTTAGTTGACCAC 59.652 52.381 0.00 0.00 0.00 4.16
1881 3267 1.186200 TGGAGAAGTCGCATAGCAGT 58.814 50.000 0.00 0.00 0.00 4.40
1943 3329 3.177228 AGCTTCTCACAGTACCCATCTT 58.823 45.455 0.00 0.00 0.00 2.40
2022 3408 0.601311 GGAATCTCGCCGCTAAGCAT 60.601 55.000 0.00 0.00 0.00 3.79
2101 3514 1.339535 CCCTTGGCTTCTCTCAAGACC 60.340 57.143 4.83 0.00 41.94 3.85
2124 3537 0.767375 TCTTTTGGAGAGGCTGCTGT 59.233 50.000 0.00 0.00 0.00 4.40
2325 3754 4.505039 GGCTGTCCAGAAAGTTCCTCTTTA 60.505 45.833 0.00 0.00 45.15 1.85
2389 3863 7.105588 TGCTGATTGACATGTTTAGTAGATGT 58.894 34.615 0.00 0.00 42.93 3.06
2401 3875 1.945394 GTAGGGCTGCTGATTGACATG 59.055 52.381 0.00 0.00 0.00 3.21
2404 3878 2.113860 TTGTAGGGCTGCTGATTGAC 57.886 50.000 0.00 0.00 0.00 3.18
2457 3949 6.575162 TTAGAAAAGAAGATTTGGTGAGCC 57.425 37.500 0.00 0.00 0.00 4.70
2555 4056 5.581605 TCGATACGTAATTACAAGGGACAC 58.418 41.667 15.67 0.00 0.00 3.67
2833 4913 1.893801 AGACAGTGGAAACTACTCCCG 59.106 52.381 0.00 0.00 34.22 5.14
2845 4925 2.361757 CCATAGAGAGAGCAGACAGTGG 59.638 54.545 0.00 0.00 0.00 4.00
2847 4927 2.024464 ACCCATAGAGAGAGCAGACAGT 60.024 50.000 0.00 0.00 0.00 3.55
3180 5737 1.293498 GACGGCAGAAGGAGCAAGA 59.707 57.895 0.00 0.00 0.00 3.02
3239 5804 3.689649 ACAGTCTCGTGAAAAGCAAAAGT 59.310 39.130 0.00 0.00 0.00 2.66
3399 5966 9.289782 GCACTGATATAAAATTAGAGGACCAAT 57.710 33.333 0.00 0.00 0.00 3.16
3400 5967 8.271458 TGCACTGATATAAAATTAGAGGACCAA 58.729 33.333 0.00 0.00 0.00 3.67
3529 6123 3.960102 AGAAAAAGGCAAAGATGTGACCA 59.040 39.130 0.00 0.00 0.00 4.02
3684 6278 1.625818 GGAAGACAGACACATGAGGGT 59.374 52.381 0.00 0.00 0.00 4.34
3722 6316 4.799715 TTAAGAAAACAGTTGGAGGGGA 57.200 40.909 0.00 0.00 0.00 4.81
3771 6365 2.093447 GTCCTGACAATAGTCCAGGTGG 60.093 54.545 0.00 0.00 44.33 4.61
3782 6376 3.331889 AGAAACATGGGAGTCCTGACAAT 59.668 43.478 9.58 0.00 0.00 2.71
3844 6438 2.226315 ATGGGGCTGTGTGCTCAGA 61.226 57.895 5.56 0.00 46.01 3.27
4185 7039 4.750098 TCATCAGTTTTCAGGTCTTCGAAC 59.250 41.667 0.00 0.00 0.00 3.95
4252 7106 3.698539 TCAGTGCAACATTGAGGACAAAA 59.301 39.130 0.00 0.00 41.43 2.44
4261 7115 4.275196 CCTCATCCTATCAGTGCAACATTG 59.725 45.833 0.00 0.00 41.43 2.82
4267 7132 3.580039 TCATCCTCATCCTATCAGTGCA 58.420 45.455 0.00 0.00 0.00 4.57
4268 7133 4.505808 CATCATCCTCATCCTATCAGTGC 58.494 47.826 0.00 0.00 0.00 4.40
4269 7134 4.081031 CCCATCATCCTCATCCTATCAGTG 60.081 50.000 0.00 0.00 0.00 3.66
4270 7135 4.102598 CCCATCATCCTCATCCTATCAGT 58.897 47.826 0.00 0.00 0.00 3.41
4271 7136 4.359996 TCCCATCATCCTCATCCTATCAG 58.640 47.826 0.00 0.00 0.00 2.90
4272 7137 4.424761 TCCCATCATCCTCATCCTATCA 57.575 45.455 0.00 0.00 0.00 2.15
4273 7138 4.967442 TCATCCCATCATCCTCATCCTATC 59.033 45.833 0.00 0.00 0.00 2.08
4276 7152 3.182976 CTCATCCCATCATCCTCATCCT 58.817 50.000 0.00 0.00 0.00 3.24
4314 7190 6.635030 AACTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
4368 7244 5.071250 AGTTGTACTCCCAGTGTCAATAACA 59.929 40.000 0.00 0.00 34.78 2.41
4379 7255 9.939802 AACTTTAGTATAAAGTTGTACTCCCAG 57.060 33.333 20.99 2.93 45.58 4.45
4493 7428 6.171213 ACTTTTGAGATACGGGGTCTAAAAG 58.829 40.000 0.00 0.00 35.43 2.27
4497 7432 5.246656 TCAAACTTTTGAGATACGGGGTCTA 59.753 40.000 0.07 0.00 41.88 2.59
4552 7487 5.590530 AAACCCGCTTGATTTATTATGCA 57.409 34.783 0.00 0.00 0.00 3.96
4684 7619 1.456196 TTTTGGTGCCATCCGCGAAA 61.456 50.000 8.23 0.00 42.08 3.46
4687 7622 2.179018 CTTTTGGTGCCATCCGCG 59.821 61.111 0.00 0.00 42.08 6.46
4730 7665 4.642885 CCTTTTAATGCCATCCCTAAACGA 59.357 41.667 0.00 0.00 0.00 3.85
4744 7679 9.500864 CCAAACAAAACAAACATCCTTTTAATG 57.499 29.630 0.00 0.00 0.00 1.90
4745 7680 9.454859 TCCAAACAAAACAAACATCCTTTTAAT 57.545 25.926 0.00 0.00 0.00 1.40
4746 7681 8.848474 TCCAAACAAAACAAACATCCTTTTAA 57.152 26.923 0.00 0.00 0.00 1.52
4747 7682 9.454859 AATCCAAACAAAACAAACATCCTTTTA 57.545 25.926 0.00 0.00 0.00 1.52
4748 7683 7.936496 ATCCAAACAAAACAAACATCCTTTT 57.064 28.000 0.00 0.00 0.00 2.27
4749 7684 7.936496 AATCCAAACAAAACAAACATCCTTT 57.064 28.000 0.00 0.00 0.00 3.11
4750 7685 7.936496 AAATCCAAACAAAACAAACATCCTT 57.064 28.000 0.00 0.00 0.00 3.36
4751 7686 7.392953 ACAAAATCCAAACAAAACAAACATCCT 59.607 29.630 0.00 0.00 0.00 3.24
4758 7693 9.023967 CAAACAAACAAAATCCAAACAAAACAA 57.976 25.926 0.00 0.00 0.00 2.83
4778 7713 4.020396 CCATCCATTGTCATTCCCAAACAA 60.020 41.667 0.00 0.00 37.32 2.83
4779 7714 3.514706 CCATCCATTGTCATTCCCAAACA 59.485 43.478 0.00 0.00 0.00 2.83
4791 7726 0.323725 GGGCAGACACCATCCATTGT 60.324 55.000 0.00 0.00 0.00 2.71
4831 7766 0.675083 TGCAGCCAAACAAGATGTGG 59.325 50.000 0.00 0.00 35.39 4.17
4843 7778 1.619332 TGAGAAAATTGCATGCAGCCA 59.381 42.857 21.50 6.77 44.83 4.75
4860 7795 9.499585 CATTATCTACATCTTTGTTGCTTTGAG 57.500 33.333 0.00 0.00 37.28 3.02
4912 7847 1.963855 CGACCGGCATGAACCACAA 60.964 57.895 0.00 0.00 0.00 3.33
4943 7878 2.365582 GATGACCATTTTGTAGGCCGT 58.634 47.619 0.00 0.00 0.00 5.68
4951 7886 2.236489 ACTGGGGGATGACCATTTTG 57.764 50.000 0.00 0.00 42.91 2.44
4959 7894 0.034863 GGCGTTAAACTGGGGGATGA 60.035 55.000 0.00 0.00 0.00 2.92
4963 7898 3.436924 GCGGCGTTAAACTGGGGG 61.437 66.667 9.37 0.00 0.00 5.40
4967 7902 0.029567 TTGTTGGCGGCGTTAAACTG 59.970 50.000 9.37 0.00 0.00 3.16
4992 7927 2.085320 CTACTGTGTCGGTCACTAGCT 58.915 52.381 6.90 0.00 46.27 3.32
4993 7928 1.467713 GCTACTGTGTCGGTCACTAGC 60.468 57.143 6.90 8.41 46.27 3.42
4994 7929 1.132643 GGCTACTGTGTCGGTCACTAG 59.867 57.143 6.90 5.45 46.27 2.57
4995 7930 1.171308 GGCTACTGTGTCGGTCACTA 58.829 55.000 6.90 0.00 46.27 2.74
4996 7931 0.826256 TGGCTACTGTGTCGGTCACT 60.826 55.000 6.90 0.00 46.27 3.41
5005 7940 4.984161 CCATTTTGAAGTTTGGCTACTGTG 59.016 41.667 0.00 0.00 0.00 3.66
5009 7944 5.195001 TGACCATTTTGAAGTTTGGCTAC 57.805 39.130 0.00 0.00 32.26 3.58
5016 7951 3.173151 GGGGGATGACCATTTTGAAGTT 58.827 45.455 0.00 0.00 42.91 2.66
5017 7952 2.111613 TGGGGGATGACCATTTTGAAGT 59.888 45.455 0.00 0.00 42.91 3.01
5018 7953 2.762327 CTGGGGGATGACCATTTTGAAG 59.238 50.000 0.00 0.00 42.91 3.02
5019 7954 2.111613 ACTGGGGGATGACCATTTTGAA 59.888 45.455 0.00 0.00 42.91 2.69
5020 7955 1.715931 ACTGGGGGATGACCATTTTGA 59.284 47.619 0.00 0.00 42.91 2.69
5021 7956 2.236489 ACTGGGGGATGACCATTTTG 57.764 50.000 0.00 0.00 42.91 2.44
5022 7957 3.274281 AAACTGGGGGATGACCATTTT 57.726 42.857 0.00 0.00 42.91 1.82
5023 7958 4.093743 GTTAAACTGGGGGATGACCATTT 58.906 43.478 0.00 0.00 42.91 2.32
5024 7959 3.708451 GTTAAACTGGGGGATGACCATT 58.292 45.455 0.00 0.00 42.91 3.16
5025 7960 2.356741 CGTTAAACTGGGGGATGACCAT 60.357 50.000 0.00 0.00 42.91 3.55
5026 7961 1.003812 CGTTAAACTGGGGGATGACCA 59.996 52.381 0.00 0.00 42.91 4.02
5027 7962 1.746470 CGTTAAACTGGGGGATGACC 58.254 55.000 0.00 0.00 39.11 4.02
5028 7963 1.092348 GCGTTAAACTGGGGGATGAC 58.908 55.000 0.00 0.00 0.00 3.06
5029 7964 0.034863 GGCGTTAAACTGGGGGATGA 60.035 55.000 0.00 0.00 0.00 2.92
5030 7965 1.373590 CGGCGTTAAACTGGGGGATG 61.374 60.000 0.00 0.00 0.00 3.51
5031 7966 1.078001 CGGCGTTAAACTGGGGGAT 60.078 57.895 0.00 0.00 0.00 3.85
5032 7967 2.348243 CGGCGTTAAACTGGGGGA 59.652 61.111 0.00 0.00 0.00 4.81
5033 7968 3.436924 GCGGCGTTAAACTGGGGG 61.437 66.667 9.37 0.00 0.00 5.40
5034 7969 3.436924 GGCGGCGTTAAACTGGGG 61.437 66.667 9.37 0.00 0.00 4.96
5035 7970 2.262303 TTGGCGGCGTTAAACTGGG 61.262 57.895 9.37 0.00 0.00 4.45
5036 7971 1.081708 GTTGGCGGCGTTAAACTGG 60.082 57.895 9.37 0.00 0.00 4.00
5037 7972 0.029567 TTGTTGGCGGCGTTAAACTG 59.970 50.000 9.37 0.00 0.00 3.16
5038 7973 0.739561 TTTGTTGGCGGCGTTAAACT 59.260 45.000 9.37 0.00 0.00 2.66
5039 7974 1.125270 CTTTGTTGGCGGCGTTAAAC 58.875 50.000 9.37 11.31 0.00 2.01
5040 7975 0.595310 GCTTTGTTGGCGGCGTTAAA 60.595 50.000 9.37 4.41 0.00 1.52
5041 7976 1.008309 GCTTTGTTGGCGGCGTTAA 60.008 52.632 9.37 0.71 0.00 2.01
5042 7977 0.603172 TAGCTTTGTTGGCGGCGTTA 60.603 50.000 9.37 0.00 34.52 3.18
5043 7978 1.448922 TTAGCTTTGTTGGCGGCGTT 61.449 50.000 9.37 0.00 34.52 4.84
5044 7979 1.852067 CTTAGCTTTGTTGGCGGCGT 61.852 55.000 9.37 0.00 34.52 5.68
5045 7980 1.154225 CTTAGCTTTGTTGGCGGCG 60.154 57.895 0.51 0.51 34.52 6.46
5046 7981 1.444383 GCTTAGCTTTGTTGGCGGC 60.444 57.895 0.00 0.00 34.52 6.53
5047 7982 1.398390 CTAGCTTAGCTTTGTTGGCGG 59.602 52.381 13.44 0.00 40.44 6.13
5048 7983 2.076863 ACTAGCTTAGCTTTGTTGGCG 58.923 47.619 13.44 0.00 40.44 5.69
5049 7984 3.074412 TCACTAGCTTAGCTTTGTTGGC 58.926 45.455 13.44 0.00 40.44 4.52
5050 7985 3.437049 GGTCACTAGCTTAGCTTTGTTGG 59.563 47.826 13.44 2.01 40.44 3.77
5051 7986 3.123621 CGGTCACTAGCTTAGCTTTGTTG 59.876 47.826 13.44 4.96 40.44 3.33
5052 7987 3.006537 TCGGTCACTAGCTTAGCTTTGTT 59.993 43.478 13.44 0.00 40.44 2.83
5053 7988 2.561419 TCGGTCACTAGCTTAGCTTTGT 59.439 45.455 13.44 9.36 40.44 2.83
5054 7989 2.924290 GTCGGTCACTAGCTTAGCTTTG 59.076 50.000 13.44 10.52 40.44 2.77
5055 7990 2.561419 TGTCGGTCACTAGCTTAGCTTT 59.439 45.455 13.44 0.00 40.44 3.51
5056 7991 2.094649 GTGTCGGTCACTAGCTTAGCTT 60.095 50.000 13.44 0.00 43.13 3.74
5057 7992 1.473278 GTGTCGGTCACTAGCTTAGCT 59.527 52.381 12.67 12.67 43.13 3.32
5058 7993 1.201647 TGTGTCGGTCACTAGCTTAGC 59.798 52.381 0.00 0.00 46.27 3.09
5059 7994 2.488545 ACTGTGTCGGTCACTAGCTTAG 59.511 50.000 6.90 0.00 46.27 2.18
5060 7995 2.511659 ACTGTGTCGGTCACTAGCTTA 58.488 47.619 6.90 0.00 46.27 3.09
5061 7996 1.329256 ACTGTGTCGGTCACTAGCTT 58.671 50.000 6.90 0.00 46.27 3.74
5062 7997 2.085320 CTACTGTGTCGGTCACTAGCT 58.915 52.381 6.90 0.00 46.27 3.32
5063 7998 1.467713 GCTACTGTGTCGGTCACTAGC 60.468 57.143 6.90 8.41 46.27 3.42
5064 7999 1.132643 GGCTACTGTGTCGGTCACTAG 59.867 57.143 6.90 5.45 46.27 2.57
5065 8000 1.171308 GGCTACTGTGTCGGTCACTA 58.829 55.000 6.90 0.00 46.27 2.74
5066 8001 0.826256 TGGCTACTGTGTCGGTCACT 60.826 55.000 6.90 0.00 46.27 3.41
5067 8002 0.032952 TTGGCTACTGTGTCGGTCAC 59.967 55.000 0.00 0.00 46.31 3.67
5068 8003 0.753867 TTTGGCTACTGTGTCGGTCA 59.246 50.000 0.00 0.00 0.00 4.02
5069 8004 1.145803 GTTTGGCTACTGTGTCGGTC 58.854 55.000 0.00 0.00 0.00 4.79
5070 8005 0.756903 AGTTTGGCTACTGTGTCGGT 59.243 50.000 0.00 0.00 0.00 4.69
5071 8006 1.798813 GAAGTTTGGCTACTGTGTCGG 59.201 52.381 0.00 0.00 0.00 4.79
5072 8007 2.479837 TGAAGTTTGGCTACTGTGTCG 58.520 47.619 0.00 0.00 0.00 4.35
5073 8008 4.893424 TTTGAAGTTTGGCTACTGTGTC 57.107 40.909 0.00 0.00 0.00 3.67
5074 8009 5.359576 TCATTTTGAAGTTTGGCTACTGTGT 59.640 36.000 0.00 0.00 0.00 3.72
5075 8010 5.830912 TCATTTTGAAGTTTGGCTACTGTG 58.169 37.500 0.00 0.00 0.00 3.66
5076 8011 6.127479 TGTTCATTTTGAAGTTTGGCTACTGT 60.127 34.615 0.00 0.00 37.00 3.55
5077 8012 6.272318 TGTTCATTTTGAAGTTTGGCTACTG 58.728 36.000 0.00 0.00 37.00 2.74
5078 8013 6.463995 TGTTCATTTTGAAGTTTGGCTACT 57.536 33.333 0.00 0.00 37.00 2.57
5079 8014 6.756542 ACTTGTTCATTTTGAAGTTTGGCTAC 59.243 34.615 0.00 0.00 37.00 3.58
5080 8015 6.872920 ACTTGTTCATTTTGAAGTTTGGCTA 58.127 32.000 0.00 0.00 37.00 3.93
5081 8016 5.733676 ACTTGTTCATTTTGAAGTTTGGCT 58.266 33.333 0.00 0.00 37.00 4.75
5082 8017 6.313658 AGAACTTGTTCATTTTGAAGTTTGGC 59.686 34.615 14.80 0.00 38.46 4.52
5083 8018 7.832503 AGAACTTGTTCATTTTGAAGTTTGG 57.167 32.000 14.80 0.00 38.46 3.28
5106 8041 1.662026 GGCTTTGTTGCCGACGTAAAG 60.662 52.381 0.00 0.00 43.74 1.85
5159 8224 3.011032 AGAGGAAGGCTTGGTTCATGAAT 59.989 43.478 12.12 0.00 0.00 2.57
5164 8229 1.349026 CAGAGAGGAAGGCTTGGTTCA 59.651 52.381 3.46 0.00 0.00 3.18
5185 8250 3.627577 GGCGTTGGTGACTTGATATGAAT 59.372 43.478 0.00 0.00 0.00 2.57
5206 8271 2.363795 TCCCGTGAGTGGCCTAGG 60.364 66.667 3.67 3.67 0.00 3.02
5257 8322 2.357323 TCATTCAACAAGAGCGCAACAA 59.643 40.909 11.47 0.00 0.00 2.83
5283 8348 3.935203 TCAACTCGATCCAAAAGAGATGC 59.065 43.478 2.07 0.00 35.60 3.91
5298 8363 2.047274 ACCCGTGGCATCAACTCG 60.047 61.111 0.00 0.00 0.00 4.18
5310 8375 0.467290 ACCAATTTGTGAGCACCCGT 60.467 50.000 0.00 0.00 0.00 5.28
5358 8423 3.768468 TGGACGAAAGTTCACAAAACC 57.232 42.857 0.00 0.00 46.84 3.27
5396 8461 3.622060 ATCCCACGAAAGGTGCCCG 62.622 63.158 0.00 0.00 45.62 6.13
5407 8472 1.001406 GAGATAGGCCAAGATCCCACG 59.999 57.143 5.01 0.00 0.00 4.94
5438 8504 3.149196 GAGGAGGACACTTTGATTTGCA 58.851 45.455 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.