Multiple sequence alignment - TraesCS5B01G428500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G428500 chr5B 100.000 5055 0 0 1 5055 604145165 604140111 0.000000e+00 9335.0
1 TraesCS5B01G428500 chr5D 90.852 4974 197 106 4 4838 490007854 490003000 0.000000e+00 6427.0
2 TraesCS5B01G428500 chr5A 90.261 4826 227 105 4 4692 611633904 611629185 0.000000e+00 6083.0
3 TraesCS5B01G428500 chr5A 95.868 242 10 0 1999 2240 645413292 645413051 4.740000e-105 392.0
4 TraesCS5B01G428500 chr5A 87.302 252 26 5 4801 5050 611607953 611607706 2.980000e-72 283.0
5 TraesCS5B01G428500 chr5A 92.929 99 2 2 2286 2383 645413048 645412954 6.820000e-29 139.0
6 TraesCS5B01G428500 chr2A 85.200 1223 157 16 1176 2386 372737280 372736070 0.000000e+00 1234.0
7 TraesCS5B01G428500 chr2B 85.155 1226 155 18 1176 2386 356316207 356317420 0.000000e+00 1230.0
8 TraesCS5B01G428500 chr2B 94.000 50 3 0 1284 1333 165799932 165799883 5.430000e-10 76.8
9 TraesCS5B01G428500 chr2D 85.119 1223 158 17 1176 2386 298942652 298941442 0.000000e+00 1229.0
10 TraesCS5B01G428500 chr3A 85.849 424 51 6 1170 1593 12562516 12562930 4.640000e-120 442.0
11 TraesCS5B01G428500 chr3B 89.286 308 29 1 1191 1498 10172041 10171738 2.860000e-102 383.0
12 TraesCS5B01G428500 chr3B 98.462 65 1 0 2319 2383 826146450 826146514 1.150000e-21 115.0
13 TraesCS5B01G428500 chr3D 87.842 329 29 6 1170 1498 7969837 7969520 4.780000e-100 375.0
14 TraesCS5B01G428500 chr1D 79.610 461 71 6 1154 1613 108361806 108362244 4.920000e-80 309.0
15 TraesCS5B01G428500 chr7A 93.277 119 6 1 1988 2104 83536073 83536191 1.870000e-39 174.0
16 TraesCS5B01G428500 chr7A 94.898 98 1 2 2283 2379 83536219 83536313 3.150000e-32 150.0
17 TraesCS5B01G428500 chr4A 92.453 106 8 0 1999 2104 21864592 21864697 8.770000e-33 152.0
18 TraesCS5B01G428500 chr4A 95.556 90 1 1 2286 2375 21864730 21864816 1.900000e-29 141.0
19 TraesCS5B01G428500 chr4B 98.462 65 1 0 2319 2383 27405159 27405095 1.150000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G428500 chr5B 604140111 604145165 5054 True 9335 9335 100.000 1 5055 1 chr5B.!!$R1 5054
1 TraesCS5B01G428500 chr5D 490003000 490007854 4854 True 6427 6427 90.852 4 4838 1 chr5D.!!$R1 4834
2 TraesCS5B01G428500 chr5A 611629185 611633904 4719 True 6083 6083 90.261 4 4692 1 chr5A.!!$R2 4688
3 TraesCS5B01G428500 chr2A 372736070 372737280 1210 True 1234 1234 85.200 1176 2386 1 chr2A.!!$R1 1210
4 TraesCS5B01G428500 chr2B 356316207 356317420 1213 False 1230 1230 85.155 1176 2386 1 chr2B.!!$F1 1210
5 TraesCS5B01G428500 chr2D 298941442 298942652 1210 True 1229 1229 85.119 1176 2386 1 chr2D.!!$R1 1210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 733 0.105709 CTTCCTCCTCCTCCTCCTCC 60.106 65.0 0.00 0.0 0.00 4.30 F
706 735 0.350904 TCCTCCTCCTCCTCCTCCTA 59.649 60.0 0.00 0.0 0.00 2.94 F
2576 2653 0.392461 ATGCTGGTTACGCCGTTGAT 60.392 50.0 0.00 0.0 41.21 2.57 F
2919 3026 0.109039 GCTGAACCTCTCGAGTCACC 60.109 60.0 13.13 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2615 2692 0.672711 GATAGATTAACCCCCGCCGC 60.673 60.0 0.00 0.0 0.00 6.53 R
2741 2823 0.313987 GGGAAAACCAAACCTCTGCG 59.686 55.0 0.00 0.0 39.85 5.18 R
3744 3907 0.107456 CCTGCTGCCTACTATGTGGG 59.893 60.0 0.00 0.0 37.24 4.61 R
4636 4840 0.106708 TTCGCACAGCTGTCTTCCTT 59.893 50.0 18.64 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.366319 AACCACAGAATCAGAGGCCT 58.634 50.000 3.86 3.86 0.00 5.19
77 86 3.285484 CCATTGCTAAGGCTGAACATCT 58.715 45.455 0.00 0.00 39.59 2.90
102 111 5.760253 ACAATGCATTATTACGAGGAAGGAG 59.240 40.000 12.53 0.00 0.00 3.69
108 117 6.761714 GCATTATTACGAGGAAGGAGAGAAAA 59.238 38.462 0.00 0.00 0.00 2.29
111 120 6.607004 ATTACGAGGAAGGAGAGAAAAGAA 57.393 37.500 0.00 0.00 0.00 2.52
112 121 4.957684 ACGAGGAAGGAGAGAAAAGAAA 57.042 40.909 0.00 0.00 0.00 2.52
145 154 2.418669 ACAAGAAGGTGGAGGAAGGAA 58.581 47.619 0.00 0.00 0.00 3.36
148 157 1.064825 GAAGGTGGAGGAAGGAACCA 58.935 55.000 0.00 0.00 35.01 3.67
161 170 1.079612 GAACCAACGGTACCCTCGG 60.080 63.158 6.25 6.45 33.12 4.63
327 339 1.178276 TTCTCTCTCTTGCGGAGGAC 58.822 55.000 6.66 0.00 42.10 3.85
429 445 2.687566 GGGAGGCGGAAAGGAGGA 60.688 66.667 0.00 0.00 0.00 3.71
480 496 3.745723 GGAGACCTCAGGCCAAAAA 57.254 52.632 5.01 0.00 0.00 1.94
481 497 1.539157 GGAGACCTCAGGCCAAAAAG 58.461 55.000 5.01 0.00 0.00 2.27
482 498 1.202940 GGAGACCTCAGGCCAAAAAGT 60.203 52.381 5.01 0.00 0.00 2.66
483 499 2.587522 GAGACCTCAGGCCAAAAAGTT 58.412 47.619 5.01 0.00 0.00 2.66
484 500 2.294512 GAGACCTCAGGCCAAAAAGTTG 59.705 50.000 5.01 0.00 34.25 3.16
485 501 0.752658 ACCTCAGGCCAAAAAGTTGC 59.247 50.000 5.01 0.00 33.01 4.17
486 502 0.752054 CCTCAGGCCAAAAAGTTGCA 59.248 50.000 5.01 0.00 33.01 4.08
487 503 1.345415 CCTCAGGCCAAAAAGTTGCAT 59.655 47.619 5.01 0.00 33.01 3.96
488 504 2.562298 CCTCAGGCCAAAAAGTTGCATA 59.438 45.455 5.01 0.00 33.01 3.14
489 505 3.578688 CTCAGGCCAAAAAGTTGCATAC 58.421 45.455 5.01 0.00 33.01 2.39
490 506 2.030363 TCAGGCCAAAAAGTTGCATACG 60.030 45.455 5.01 0.00 33.01 3.06
491 507 1.960689 AGGCCAAAAAGTTGCATACGT 59.039 42.857 5.01 0.00 33.01 3.57
492 508 2.030274 AGGCCAAAAAGTTGCATACGTC 60.030 45.455 5.01 0.00 33.01 4.34
493 509 2.324860 GCCAAAAAGTTGCATACGTCC 58.675 47.619 0.00 0.00 33.01 4.79
494 510 2.287909 GCCAAAAAGTTGCATACGTCCA 60.288 45.455 0.00 0.00 33.01 4.02
495 511 3.613910 GCCAAAAAGTTGCATACGTCCAT 60.614 43.478 0.00 0.00 33.01 3.41
496 512 3.919804 CCAAAAAGTTGCATACGTCCATG 59.080 43.478 0.00 0.00 33.01 3.66
500 516 5.446143 AAAGTTGCATACGTCCATGAAAA 57.554 34.783 2.44 0.00 0.00 2.29
701 730 0.753848 CGTCTTCCTCCTCCTCCTCC 60.754 65.000 0.00 0.00 0.00 4.30
702 731 0.634465 GTCTTCCTCCTCCTCCTCCT 59.366 60.000 0.00 0.00 0.00 3.69
703 732 0.930726 TCTTCCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
704 733 0.105709 CTTCCTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
705 734 0.556380 TTCCTCCTCCTCCTCCTCCT 60.556 60.000 0.00 0.00 0.00 3.69
706 735 0.350904 TCCTCCTCCTCCTCCTCCTA 59.649 60.000 0.00 0.00 0.00 2.94
707 736 1.059364 TCCTCCTCCTCCTCCTCCTAT 60.059 57.143 0.00 0.00 0.00 2.57
708 737 1.077005 CCTCCTCCTCCTCCTCCTATG 59.923 61.905 0.00 0.00 0.00 2.23
782 815 1.153249 CGGCCGTCTCTCTCTCTCT 60.153 63.158 19.50 0.00 0.00 3.10
787 820 2.364324 GCCGTCTCTCTCTCTCTCTCTA 59.636 54.545 0.00 0.00 0.00 2.43
788 821 3.553096 GCCGTCTCTCTCTCTCTCTCTAG 60.553 56.522 0.00 0.00 0.00 2.43
789 822 3.889538 CCGTCTCTCTCTCTCTCTCTAGA 59.110 52.174 0.00 0.00 0.00 2.43
851 895 4.202430 CCAACACCATATAGTTACTCCCCC 60.202 50.000 0.00 0.00 0.00 5.40
895 940 3.264947 CTGGAGCAGCAACAGCAG 58.735 61.111 0.00 0.00 0.00 4.24
933 984 0.679640 AATCCAAGAAATCCGCCGCA 60.680 50.000 0.00 0.00 0.00 5.69
937 988 2.180204 AAGAAATCCGCCGCATCCG 61.180 57.895 0.00 0.00 0.00 4.18
1974 2045 2.126189 GGGTACGTGCTGACCGTC 60.126 66.667 3.01 0.00 39.60 4.79
2408 2483 0.979709 CCAGATCTGAGCCCACTCCA 60.980 60.000 24.62 0.00 42.74 3.86
2426 2501 3.657727 CTCCACACCTCCCCCATTATTAT 59.342 47.826 0.00 0.00 0.00 1.28
2427 2502 4.058731 TCCACACCTCCCCCATTATTATT 58.941 43.478 0.00 0.00 0.00 1.40
2428 2503 5.236334 TCCACACCTCCCCCATTATTATTA 58.764 41.667 0.00 0.00 0.00 0.98
2429 2504 5.860666 TCCACACCTCCCCCATTATTATTAT 59.139 40.000 0.00 0.00 0.00 1.28
2430 2505 6.336930 TCCACACCTCCCCCATTATTATTATT 59.663 38.462 0.00 0.00 0.00 1.40
2431 2506 7.521468 TCCACACCTCCCCCATTATTATTATTA 59.479 37.037 0.00 0.00 0.00 0.98
2497 2572 2.715737 TGCCACCGAAAATTTACAGC 57.284 45.000 0.00 0.00 0.00 4.40
2576 2653 0.392461 ATGCTGGTTACGCCGTTGAT 60.392 50.000 0.00 0.00 41.21 2.57
2614 2691 4.108673 GGGTACCGGTGAGTGAGT 57.891 61.111 19.93 0.00 40.86 3.41
2615 2692 1.590147 GGGTACCGGTGAGTGAGTG 59.410 63.158 19.93 0.00 40.86 3.51
2741 2823 1.887301 CCATGTACCGCCCAAAACC 59.113 57.895 0.00 0.00 0.00 3.27
2771 2853 4.479786 TTGGTTTTCCCTTGGAGTTTTG 57.520 40.909 0.00 0.00 39.73 2.44
2847 2932 1.843368 CCAGTCCATTGGCATCAACT 58.157 50.000 0.00 0.00 35.48 3.16
2848 2933 1.747355 CCAGTCCATTGGCATCAACTC 59.253 52.381 0.00 0.00 35.48 3.01
2849 2934 1.747355 CAGTCCATTGGCATCAACTCC 59.253 52.381 0.00 0.00 35.48 3.85
2863 2970 1.602377 CAACTCCGTGGAAACTTGGAC 59.398 52.381 0.00 0.00 32.17 4.02
2868 2975 1.338389 CCGTGGAAACTTGGACGGTAT 60.338 52.381 0.00 0.00 45.08 2.73
2871 2978 3.615496 CGTGGAAACTTGGACGGTATTAG 59.385 47.826 0.00 0.00 0.00 1.73
2872 2979 4.618927 CGTGGAAACTTGGACGGTATTAGA 60.619 45.833 0.00 0.00 0.00 2.10
2873 2980 5.240121 GTGGAAACTTGGACGGTATTAGAA 58.760 41.667 0.00 0.00 0.00 2.10
2878 2985 7.336176 GGAAACTTGGACGGTATTAGAAAGAAT 59.664 37.037 0.00 0.00 0.00 2.40
2883 2990 7.606135 TGGACGGTATTAGAAAGAATCCATA 57.394 36.000 0.00 0.00 0.00 2.74
2910 3017 5.128008 GGTAGAATAACTGAGCTGAACCTCT 59.872 44.000 0.00 0.00 33.02 3.69
2912 3019 3.791973 ATAACTGAGCTGAACCTCTCG 57.208 47.619 0.00 0.00 33.02 4.04
2914 3021 1.173043 ACTGAGCTGAACCTCTCGAG 58.827 55.000 5.93 5.93 33.02 4.04
2915 3022 1.173043 CTGAGCTGAACCTCTCGAGT 58.827 55.000 13.13 0.00 33.02 4.18
2917 3024 1.169577 GAGCTGAACCTCTCGAGTCA 58.830 55.000 13.13 7.79 0.00 3.41
2918 3025 0.885196 AGCTGAACCTCTCGAGTCAC 59.115 55.000 13.13 4.22 0.00 3.67
2919 3026 0.109039 GCTGAACCTCTCGAGTCACC 60.109 60.000 13.13 0.00 0.00 4.02
2920 3027 1.248486 CTGAACCTCTCGAGTCACCA 58.752 55.000 13.13 4.92 0.00 4.17
2921 3028 0.959553 TGAACCTCTCGAGTCACCAC 59.040 55.000 13.13 2.24 0.00 4.16
2923 3030 2.143594 AACCTCTCGAGTCACCACGC 62.144 60.000 13.13 0.00 0.00 5.34
2925 3032 4.400109 TCTCGAGTCACCACGCGC 62.400 66.667 13.13 0.00 44.67 6.86
2926 3033 4.406173 CTCGAGTCACCACGCGCT 62.406 66.667 5.73 0.00 44.67 5.92
2989 3096 5.104776 TCCTGATTGATGCTGTTACTAGCTT 60.105 40.000 0.00 2.79 44.01 3.74
2990 3097 5.007430 CCTGATTGATGCTGTTACTAGCTTG 59.993 44.000 0.00 0.00 44.01 4.01
2991 3098 4.333649 TGATTGATGCTGTTACTAGCTTGC 59.666 41.667 0.00 0.00 44.01 4.01
2992 3099 3.333029 TGATGCTGTTACTAGCTTGCA 57.667 42.857 0.00 0.00 44.01 4.08
3014 3121 2.386779 AGCAAGCTCAGCTCAGATCTA 58.613 47.619 0.00 0.00 38.25 1.98
3082 3189 0.821711 TTCCCAAAAGCACCAGACCG 60.822 55.000 0.00 0.00 0.00 4.79
3209 3316 2.357517 CCGTGCGCCTTTCTGAGT 60.358 61.111 4.18 0.00 0.00 3.41
3311 3420 8.148437 TGGTATAAATAACTCCTGTGTGGTAA 57.852 34.615 0.00 0.00 37.07 2.85
3312 3421 8.042515 TGGTATAAATAACTCCTGTGTGGTAAC 58.957 37.037 0.00 0.00 37.07 2.50
3313 3422 7.496920 GGTATAAATAACTCCTGTGTGGTAACC 59.503 40.741 0.00 0.00 37.07 2.85
3317 3426 1.348064 CTCCTGTGTGGTAACCCTGA 58.652 55.000 0.00 0.00 37.07 3.86
3319 3428 0.324943 CCTGTGTGGTAACCCTGAGG 59.675 60.000 0.00 0.00 40.04 3.86
3320 3429 4.716422 TCCTGTGTGGTAACCCTGAGGT 62.716 54.545 0.00 0.00 42.51 3.85
3358 3482 4.536765 CCATTATTTGTAGACCCAGCCTT 58.463 43.478 0.00 0.00 0.00 4.35
3359 3483 5.690865 CCATTATTTGTAGACCCAGCCTTA 58.309 41.667 0.00 0.00 0.00 2.69
3361 3485 3.933861 ATTTGTAGACCCAGCCTTAGG 57.066 47.619 0.00 0.00 0.00 2.69
3364 3488 2.627933 TGTAGACCCAGCCTTAGGTTT 58.372 47.619 0.00 0.00 36.17 3.27
3365 3489 2.304761 TGTAGACCCAGCCTTAGGTTTG 59.695 50.000 0.00 0.00 36.17 2.93
3366 3490 1.446016 AGACCCAGCCTTAGGTTTGT 58.554 50.000 0.00 0.00 36.17 2.83
3367 3491 1.073923 AGACCCAGCCTTAGGTTTGTG 59.926 52.381 0.00 0.00 36.17 3.33
3368 3492 0.850784 ACCCAGCCTTAGGTTTGTGT 59.149 50.000 0.00 0.00 29.94 3.72
3369 3493 2.039348 GACCCAGCCTTAGGTTTGTGTA 59.961 50.000 0.00 0.00 36.17 2.90
3370 3494 2.647802 ACCCAGCCTTAGGTTTGTGTAT 59.352 45.455 0.00 0.00 29.94 2.29
3371 3495 3.847780 ACCCAGCCTTAGGTTTGTGTATA 59.152 43.478 0.00 0.00 29.94 1.47
3594 3730 3.270027 CCAATAGCCTGTGAATCACGAA 58.730 45.455 9.00 0.00 37.14 3.85
3595 3731 3.879295 CCAATAGCCTGTGAATCACGAAT 59.121 43.478 9.00 0.00 37.14 3.34
3596 3732 4.260907 CCAATAGCCTGTGAATCACGAATG 60.261 45.833 9.00 1.38 37.14 2.67
3597 3733 2.768253 AGCCTGTGAATCACGAATGA 57.232 45.000 9.00 0.00 37.14 2.57
3611 3747 3.372206 CACGAATGACCTCCTGTGATTTC 59.628 47.826 0.00 0.00 30.36 2.17
3656 3794 3.309410 CCATTTCACCTTGCACACAAAAC 59.691 43.478 0.00 0.00 34.74 2.43
3665 3803 4.321230 CCTTGCACACAAAACTATTCCTCC 60.321 45.833 0.00 0.00 34.74 4.30
3667 3805 4.072131 TGCACACAAAACTATTCCTCCTC 58.928 43.478 0.00 0.00 0.00 3.71
3744 3907 3.060978 AGTTCCTTTCGCGTGAAAAAC 57.939 42.857 23.17 22.79 43.21 2.43
3802 3968 7.506296 TTGATAGCGCGTCTGTTATTATATG 57.494 36.000 8.43 0.00 0.00 1.78
3840 4006 2.166741 TTTGCGAATTGGCGTAATCG 57.833 45.000 7.98 0.00 35.88 3.34
3942 4108 4.154015 TCCATGCTGTTAGTTCAACAATCG 59.846 41.667 0.00 0.00 46.37 3.34
4185 4369 2.030457 CCGTCCACGATATTGTTTGCTC 59.970 50.000 0.00 0.00 43.02 4.26
4230 4415 7.607991 ACTGTTATACTGCTATGGAATAATGGC 59.392 37.037 0.00 0.00 34.82 4.40
4245 4430 2.525105 ATGGCGGGGAATGTAAAACT 57.475 45.000 0.00 0.00 0.00 2.66
4270 4455 2.281276 GTTGGTGTGTCCGGTCCC 60.281 66.667 0.00 0.00 39.52 4.46
4271 4456 3.931247 TTGGTGTGTCCGGTCCCG 61.931 66.667 0.00 0.00 39.52 5.14
4348 4542 9.666626 TGTATGTATAGGAACGTTTTTGTTTTG 57.333 29.630 0.46 0.00 30.75 2.44
4349 4543 9.667989 GTATGTATAGGAACGTTTTTGTTTTGT 57.332 29.630 0.46 0.00 30.75 2.83
4352 4546 9.420551 TGTATAGGAACGTTTTTGTTTTGTTTT 57.579 25.926 0.46 0.00 30.75 2.43
4353 4547 9.678247 GTATAGGAACGTTTTTGTTTTGTTTTG 57.322 29.630 0.46 0.00 30.75 2.44
4354 4548 5.444983 AGGAACGTTTTTGTTTTGTTTTGC 58.555 33.333 0.46 0.00 30.75 3.68
4355 4549 5.237561 AGGAACGTTTTTGTTTTGTTTTGCT 59.762 32.000 0.46 0.00 30.75 3.91
4356 4550 5.562248 GGAACGTTTTTGTTTTGTTTTGCTC 59.438 36.000 0.46 0.00 30.75 4.26
4398 4592 4.208746 TGTTTCATTTTGTCTAACGGGGT 58.791 39.130 0.00 0.00 0.00 4.95
4422 4616 2.746362 CTGGAGTGAAGAAGGTTGCATC 59.254 50.000 0.00 0.00 0.00 3.91
4440 4642 4.837860 TGCATCTGGATGGGTTAAAAGTTT 59.162 37.500 11.82 0.00 39.16 2.66
4455 4657 9.726232 GGTTAAAAGTTTAAAGTGTTGTAGGAG 57.274 33.333 8.48 0.00 34.71 3.69
4636 4840 1.943340 TGTGCTTGCGTTGTTCATGTA 59.057 42.857 0.00 0.00 0.00 2.29
4668 4872 1.597195 TGTGCGAATCAACTCACACAC 59.403 47.619 0.00 0.00 34.87 3.82
4692 4896 1.468520 CGGACAAAAGGCAGGTGTATG 59.531 52.381 0.00 0.00 0.00 2.39
4694 4898 3.681593 GGACAAAAGGCAGGTGTATGTA 58.318 45.455 0.00 0.00 0.00 2.29
4695 4899 3.439129 GGACAAAAGGCAGGTGTATGTAC 59.561 47.826 0.00 0.00 0.00 2.90
4697 4901 4.662278 ACAAAAGGCAGGTGTATGTACAT 58.338 39.130 13.93 13.93 38.63 2.29
4700 4904 5.950544 AAAGGCAGGTGTATGTACATAGA 57.049 39.130 15.93 12.18 38.63 1.98
4701 4905 6.500589 AAAGGCAGGTGTATGTACATAGAT 57.499 37.500 15.93 0.00 38.63 1.98
4702 4906 6.500589 AAGGCAGGTGTATGTACATAGATT 57.499 37.500 15.93 5.19 38.63 2.40
4703 4907 7.612065 AAGGCAGGTGTATGTACATAGATTA 57.388 36.000 15.93 0.96 38.63 1.75
4704 4908 7.798710 AGGCAGGTGTATGTACATAGATTAT 57.201 36.000 15.93 2.80 38.63 1.28
4706 4910 8.972127 AGGCAGGTGTATGTACATAGATTATAG 58.028 37.037 15.93 6.27 38.63 1.31
4707 4911 8.967918 GGCAGGTGTATGTACATAGATTATAGA 58.032 37.037 15.93 0.00 38.63 1.98
4717 4921 9.809395 TGTACATAGATTATAGAGTAGCCAACT 57.191 33.333 0.00 0.00 42.80 3.16
4742 4946 4.508662 AGATGCTTGCTCCAACTAAGTAC 58.491 43.478 0.00 0.00 0.00 2.73
4743 4947 4.223923 AGATGCTTGCTCCAACTAAGTACT 59.776 41.667 0.00 0.00 0.00 2.73
4760 4967 7.976734 ACTAAGTACTGTAGCAATTAAGCAGAG 59.023 37.037 0.00 0.00 36.85 3.35
4761 4968 6.531503 AGTACTGTAGCAATTAAGCAGAGA 57.468 37.500 0.00 0.00 36.85 3.10
4763 4970 5.667539 ACTGTAGCAATTAAGCAGAGAGA 57.332 39.130 0.00 0.00 36.85 3.10
4765 4972 5.420421 ACTGTAGCAATTAAGCAGAGAGAGA 59.580 40.000 0.00 0.00 36.85 3.10
4767 4974 6.511416 TGTAGCAATTAAGCAGAGAGAGATC 58.489 40.000 0.00 0.00 36.85 2.75
4768 4975 4.959723 AGCAATTAAGCAGAGAGAGATCC 58.040 43.478 0.00 0.00 36.85 3.36
4769 4976 4.655186 AGCAATTAAGCAGAGAGAGATCCT 59.345 41.667 0.00 0.00 36.85 3.24
4770 4977 4.751098 GCAATTAAGCAGAGAGAGATCCTG 59.249 45.833 0.00 0.00 0.00 3.86
4771 4978 5.684552 GCAATTAAGCAGAGAGAGATCCTGT 60.685 44.000 0.00 0.00 0.00 4.00
4774 4981 7.667575 ATTAAGCAGAGAGAGATCCTGTTAA 57.332 36.000 0.00 0.00 0.00 2.01
4778 4985 8.948401 AAGCAGAGAGAGATCCTGTTAATATA 57.052 34.615 0.00 0.00 0.00 0.86
4779 4986 9.545928 AAGCAGAGAGAGATCCTGTTAATATAT 57.454 33.333 0.00 0.00 0.00 0.86
4799 5006 0.966920 AGTATATCGACGCAAGGGGG 59.033 55.000 0.00 0.00 46.39 5.40
4832 5039 1.538512 TGACTTTGCTTGATGCTGCTC 59.461 47.619 0.00 0.00 43.37 4.26
4834 5041 2.228343 GACTTTGCTTGATGCTGCTCTT 59.772 45.455 0.00 0.00 43.37 2.85
4835 5042 3.415212 ACTTTGCTTGATGCTGCTCTTA 58.585 40.909 0.00 0.00 43.37 2.10
4836 5043 4.015084 ACTTTGCTTGATGCTGCTCTTAT 58.985 39.130 0.00 0.00 43.37 1.73
4837 5044 4.096081 ACTTTGCTTGATGCTGCTCTTATC 59.904 41.667 0.00 0.00 43.37 1.75
4838 5045 3.555527 TGCTTGATGCTGCTCTTATCT 57.444 42.857 0.00 0.00 43.37 1.98
4839 5046 3.882444 TGCTTGATGCTGCTCTTATCTT 58.118 40.909 0.00 0.00 43.37 2.40
4840 5047 5.027293 TGCTTGATGCTGCTCTTATCTTA 57.973 39.130 0.00 0.00 43.37 2.10
4841 5048 5.618236 TGCTTGATGCTGCTCTTATCTTAT 58.382 37.500 0.00 0.00 43.37 1.73
4842 5049 5.469084 TGCTTGATGCTGCTCTTATCTTATG 59.531 40.000 0.00 0.00 43.37 1.90
4843 5050 5.106634 GCTTGATGCTGCTCTTATCTTATGG 60.107 44.000 0.00 0.00 38.95 2.74
4844 5051 5.557576 TGATGCTGCTCTTATCTTATGGT 57.442 39.130 0.00 0.00 0.00 3.55
4845 5052 5.545588 TGATGCTGCTCTTATCTTATGGTC 58.454 41.667 0.00 0.00 0.00 4.02
4846 5053 5.070847 TGATGCTGCTCTTATCTTATGGTCA 59.929 40.000 0.00 0.00 0.00 4.02
4847 5054 5.357742 TGCTGCTCTTATCTTATGGTCAA 57.642 39.130 0.00 0.00 0.00 3.18
4848 5055 5.933617 TGCTGCTCTTATCTTATGGTCAAT 58.066 37.500 0.00 0.00 0.00 2.57
4849 5056 5.994054 TGCTGCTCTTATCTTATGGTCAATC 59.006 40.000 0.00 0.00 0.00 2.67
4850 5057 6.183361 TGCTGCTCTTATCTTATGGTCAATCT 60.183 38.462 0.00 0.00 0.00 2.40
4851 5058 6.368516 GCTGCTCTTATCTTATGGTCAATCTC 59.631 42.308 0.00 0.00 0.00 2.75
4852 5059 6.763355 TGCTCTTATCTTATGGTCAATCTCC 58.237 40.000 0.00 0.00 0.00 3.71
4853 5060 6.169800 GCTCTTATCTTATGGTCAATCTCCC 58.830 44.000 0.00 0.00 0.00 4.30
4854 5061 6.346477 TCTTATCTTATGGTCAATCTCCCG 57.654 41.667 0.00 0.00 0.00 5.14
4855 5062 5.246203 TCTTATCTTATGGTCAATCTCCCGG 59.754 44.000 0.00 0.00 0.00 5.73
4856 5063 2.047061 TCTTATGGTCAATCTCCCGGG 58.953 52.381 16.85 16.85 0.00 5.73
4857 5064 0.472471 TTATGGTCAATCTCCCGGGC 59.528 55.000 18.49 0.00 0.00 6.13
4858 5065 0.399949 TATGGTCAATCTCCCGGGCT 60.400 55.000 18.49 0.00 0.00 5.19
4859 5066 1.700042 ATGGTCAATCTCCCGGGCTC 61.700 60.000 18.49 0.11 0.00 4.70
4860 5067 2.506472 GTCAATCTCCCGGGCTCC 59.494 66.667 18.49 0.00 0.00 4.70
4861 5068 2.768344 TCAATCTCCCGGGCTCCC 60.768 66.667 18.49 0.00 0.00 4.30
4874 5081 4.436998 CTCCCGGCGTCAGACACC 62.437 72.222 6.01 0.00 0.00 4.16
4875 5082 4.988716 TCCCGGCGTCAGACACCT 62.989 66.667 6.01 0.00 0.00 4.00
4876 5083 4.436998 CCCGGCGTCAGACACCTC 62.437 72.222 6.01 0.00 0.00 3.85
4877 5084 3.680786 CCGGCGTCAGACACCTCA 61.681 66.667 6.01 0.00 0.00 3.86
4878 5085 2.126307 CGGCGTCAGACACCTCAG 60.126 66.667 6.05 0.00 0.00 3.35
4879 5086 2.626780 CGGCGTCAGACACCTCAGA 61.627 63.158 6.05 0.00 0.00 3.27
4880 5087 1.893786 GGCGTCAGACACCTCAGAT 59.106 57.895 0.00 0.00 0.00 2.90
4881 5088 0.459237 GGCGTCAGACACCTCAGATG 60.459 60.000 0.00 0.00 0.00 2.90
4882 5089 0.528017 GCGTCAGACACCTCAGATGA 59.472 55.000 0.41 0.00 0.00 2.92
4883 5090 1.468908 GCGTCAGACACCTCAGATGAG 60.469 57.143 0.41 2.72 41.71 2.90
4898 5105 6.544928 TCAGATGAGGTTGCTAATTAGTCA 57.455 37.500 13.91 9.33 0.00 3.41
4899 5106 6.577103 TCAGATGAGGTTGCTAATTAGTCAG 58.423 40.000 13.91 0.00 0.00 3.51
4900 5107 6.155221 TCAGATGAGGTTGCTAATTAGTCAGT 59.845 38.462 13.91 2.47 0.00 3.41
4901 5108 6.478344 CAGATGAGGTTGCTAATTAGTCAGTC 59.522 42.308 13.91 10.08 0.00 3.51
4902 5109 4.744570 TGAGGTTGCTAATTAGTCAGTCG 58.255 43.478 13.91 0.00 0.00 4.18
4903 5110 4.113354 GAGGTTGCTAATTAGTCAGTCGG 58.887 47.826 13.91 0.00 0.00 4.79
4904 5111 2.608090 GGTTGCTAATTAGTCAGTCGGC 59.392 50.000 13.91 0.00 0.00 5.54
4905 5112 3.259064 GTTGCTAATTAGTCAGTCGGCA 58.741 45.455 13.91 1.30 0.00 5.69
4906 5113 2.888594 TGCTAATTAGTCAGTCGGCAC 58.111 47.619 13.91 0.00 0.00 5.01
4907 5114 2.232696 TGCTAATTAGTCAGTCGGCACA 59.767 45.455 13.91 0.00 0.00 4.57
4908 5115 3.259064 GCTAATTAGTCAGTCGGCACAA 58.741 45.455 13.91 0.00 0.00 3.33
4909 5116 3.062234 GCTAATTAGTCAGTCGGCACAAC 59.938 47.826 13.91 0.00 0.00 3.32
4910 5117 2.831685 ATTAGTCAGTCGGCACAACA 57.168 45.000 0.00 0.00 0.00 3.33
4911 5118 2.148916 TTAGTCAGTCGGCACAACAG 57.851 50.000 0.00 0.00 0.00 3.16
4912 5119 0.319555 TAGTCAGTCGGCACAACAGC 60.320 55.000 0.00 0.00 0.00 4.40
4913 5120 1.887242 GTCAGTCGGCACAACAGCA 60.887 57.895 0.00 0.00 35.83 4.41
4914 5121 1.153269 TCAGTCGGCACAACAGCAA 60.153 52.632 0.00 0.00 35.83 3.91
4915 5122 0.746204 TCAGTCGGCACAACAGCAAA 60.746 50.000 0.00 0.00 35.83 3.68
4916 5123 0.317269 CAGTCGGCACAACAGCAAAG 60.317 55.000 0.00 0.00 35.83 2.77
4917 5124 1.658409 GTCGGCACAACAGCAAAGC 60.658 57.895 0.00 0.00 35.83 3.51
4918 5125 2.726912 CGGCACAACAGCAAAGCG 60.727 61.111 0.00 0.00 35.83 4.68
4919 5126 2.412937 GGCACAACAGCAAAGCGT 59.587 55.556 0.00 0.00 35.83 5.07
4920 5127 1.652012 GGCACAACAGCAAAGCGTA 59.348 52.632 0.00 0.00 35.83 4.42
4921 5128 0.385974 GGCACAACAGCAAAGCGTAG 60.386 55.000 0.00 0.00 35.83 3.51
4939 5146 3.351604 GCTTATGCTTATCACGCGC 57.648 52.632 5.73 0.00 36.03 6.86
4940 5147 0.581529 GCTTATGCTTATCACGCGCA 59.418 50.000 5.73 0.00 38.14 6.09
4941 5148 1.397693 GCTTATGCTTATCACGCGCAG 60.398 52.381 5.73 2.42 37.06 5.18
4942 5149 1.193203 CTTATGCTTATCACGCGCAGG 59.807 52.381 5.73 0.00 37.06 4.85
4953 5160 2.591715 GCGCAGGGCCATCGTAAT 60.592 61.111 6.18 0.00 34.80 1.89
4954 5161 2.896801 GCGCAGGGCCATCGTAATG 61.897 63.158 6.18 0.00 34.80 1.90
4955 5162 1.523711 CGCAGGGCCATCGTAATGT 60.524 57.895 6.18 0.00 0.00 2.71
4956 5163 1.775039 CGCAGGGCCATCGTAATGTG 61.775 60.000 6.18 0.00 0.00 3.21
4957 5164 0.748005 GCAGGGCCATCGTAATGTGT 60.748 55.000 6.18 0.00 0.00 3.72
4958 5165 1.016627 CAGGGCCATCGTAATGTGTG 58.983 55.000 6.18 0.00 0.00 3.82
4959 5166 0.908910 AGGGCCATCGTAATGTGTGA 59.091 50.000 6.18 0.00 0.00 3.58
4960 5167 1.280710 AGGGCCATCGTAATGTGTGAA 59.719 47.619 6.18 0.00 0.00 3.18
4961 5168 2.092429 AGGGCCATCGTAATGTGTGAAT 60.092 45.455 6.18 0.00 0.00 2.57
4962 5169 2.290641 GGGCCATCGTAATGTGTGAATC 59.709 50.000 4.39 0.00 0.00 2.52
4963 5170 2.032894 GGCCATCGTAATGTGTGAATCG 60.033 50.000 0.00 0.00 0.00 3.34
4964 5171 2.863740 GCCATCGTAATGTGTGAATCGA 59.136 45.455 0.00 0.00 0.00 3.59
4965 5172 3.060272 GCCATCGTAATGTGTGAATCGAG 60.060 47.826 0.00 0.00 0.00 4.04
4966 5173 3.490896 CCATCGTAATGTGTGAATCGAGG 59.509 47.826 0.00 0.00 0.00 4.63
4967 5174 3.861276 TCGTAATGTGTGAATCGAGGT 57.139 42.857 0.00 0.00 0.00 3.85
4968 5175 4.182693 TCGTAATGTGTGAATCGAGGTT 57.817 40.909 0.00 0.00 0.00 3.50
4969 5176 4.562082 TCGTAATGTGTGAATCGAGGTTT 58.438 39.130 0.00 0.00 0.00 3.27
4970 5177 4.387559 TCGTAATGTGTGAATCGAGGTTTG 59.612 41.667 0.00 0.00 0.00 2.93
4971 5178 4.387559 CGTAATGTGTGAATCGAGGTTTGA 59.612 41.667 0.00 0.00 0.00 2.69
4972 5179 5.063438 CGTAATGTGTGAATCGAGGTTTGAT 59.937 40.000 0.00 0.00 0.00 2.57
4973 5180 5.551760 AATGTGTGAATCGAGGTTTGATC 57.448 39.130 0.00 0.00 0.00 2.92
4974 5181 4.271696 TGTGTGAATCGAGGTTTGATCT 57.728 40.909 0.00 0.00 0.00 2.75
4975 5182 4.245660 TGTGTGAATCGAGGTTTGATCTC 58.754 43.478 0.00 0.00 0.00 2.75
4976 5183 4.021104 TGTGTGAATCGAGGTTTGATCTCT 60.021 41.667 0.00 0.00 0.00 3.10
4977 5184 5.185056 TGTGTGAATCGAGGTTTGATCTCTA 59.815 40.000 0.00 0.00 0.00 2.43
4978 5185 6.127338 TGTGTGAATCGAGGTTTGATCTCTAT 60.127 38.462 0.00 0.00 0.00 1.98
4979 5186 6.419413 GTGTGAATCGAGGTTTGATCTCTATC 59.581 42.308 0.00 0.00 0.00 2.08
4980 5187 6.096846 TGTGAATCGAGGTTTGATCTCTATCA 59.903 38.462 0.00 0.00 40.43 2.15
4981 5188 6.640499 GTGAATCGAGGTTTGATCTCTATCAG 59.360 42.308 0.00 0.00 42.97 2.90
4982 5189 6.322456 TGAATCGAGGTTTGATCTCTATCAGT 59.678 38.462 0.00 0.00 42.97 3.41
4983 5190 7.502561 TGAATCGAGGTTTGATCTCTATCAGTA 59.497 37.037 0.00 0.00 42.97 2.74
4984 5191 7.825331 ATCGAGGTTTGATCTCTATCAGTAA 57.175 36.000 0.00 0.00 42.97 2.24
4985 5192 7.640597 TCGAGGTTTGATCTCTATCAGTAAA 57.359 36.000 0.00 0.00 42.97 2.01
4986 5193 7.481642 TCGAGGTTTGATCTCTATCAGTAAAC 58.518 38.462 0.00 0.00 42.97 2.01
4987 5194 6.415280 CGAGGTTTGATCTCTATCAGTAAACG 59.585 42.308 0.00 0.00 42.97 3.60
4988 5195 7.406031 AGGTTTGATCTCTATCAGTAAACGA 57.594 36.000 0.00 0.00 42.97 3.85
4989 5196 7.837863 AGGTTTGATCTCTATCAGTAAACGAA 58.162 34.615 0.00 0.00 42.97 3.85
4990 5197 8.478877 AGGTTTGATCTCTATCAGTAAACGAAT 58.521 33.333 0.00 0.00 42.97 3.34
4991 5198 8.543774 GGTTTGATCTCTATCAGTAAACGAATG 58.456 37.037 0.00 0.00 42.97 2.67
4992 5199 8.543774 GTTTGATCTCTATCAGTAAACGAATGG 58.456 37.037 0.00 0.00 42.97 3.16
4993 5200 7.582667 TGATCTCTATCAGTAAACGAATGGA 57.417 36.000 0.00 0.00 37.20 3.41
4994 5201 7.652727 TGATCTCTATCAGTAAACGAATGGAG 58.347 38.462 0.00 5.41 37.20 3.86
4995 5202 7.285629 TGATCTCTATCAGTAAACGAATGGAGT 59.714 37.037 0.00 1.68 37.20 3.85
4996 5203 7.406031 TCTCTATCAGTAAACGAATGGAGTT 57.594 36.000 0.00 0.00 0.00 3.01
4997 5204 7.258441 TCTCTATCAGTAAACGAATGGAGTTG 58.742 38.462 0.00 0.00 31.43 3.16
4998 5205 6.931838 TCTATCAGTAAACGAATGGAGTTGT 58.068 36.000 0.00 0.00 31.43 3.32
4999 5206 7.383687 TCTATCAGTAAACGAATGGAGTTGTT 58.616 34.615 0.00 0.00 31.43 2.83
5000 5207 5.666969 TCAGTAAACGAATGGAGTTGTTG 57.333 39.130 0.00 0.00 31.43 3.33
5001 5208 5.120399 TCAGTAAACGAATGGAGTTGTTGT 58.880 37.500 0.00 0.00 31.43 3.32
5002 5209 6.282167 TCAGTAAACGAATGGAGTTGTTGTA 58.718 36.000 0.00 0.00 31.43 2.41
5003 5210 6.422701 TCAGTAAACGAATGGAGTTGTTGTAG 59.577 38.462 0.00 0.00 31.43 2.74
5004 5211 6.202188 CAGTAAACGAATGGAGTTGTTGTAGT 59.798 38.462 0.00 0.00 31.43 2.73
5005 5212 7.383029 CAGTAAACGAATGGAGTTGTTGTAGTA 59.617 37.037 0.00 0.00 31.43 1.82
5006 5213 6.780706 AAACGAATGGAGTTGTTGTAGTAG 57.219 37.500 0.00 0.00 31.43 2.57
5007 5214 5.464030 ACGAATGGAGTTGTTGTAGTAGT 57.536 39.130 0.00 0.00 0.00 2.73
5008 5215 6.579666 ACGAATGGAGTTGTTGTAGTAGTA 57.420 37.500 0.00 0.00 0.00 1.82
5009 5216 6.618811 ACGAATGGAGTTGTTGTAGTAGTAG 58.381 40.000 0.00 0.00 0.00 2.57
5010 5217 6.208204 ACGAATGGAGTTGTTGTAGTAGTAGT 59.792 38.462 0.00 0.00 0.00 2.73
5011 5218 7.088905 CGAATGGAGTTGTTGTAGTAGTAGTT 58.911 38.462 0.00 0.00 0.00 2.24
5012 5219 7.061905 CGAATGGAGTTGTTGTAGTAGTAGTTG 59.938 40.741 0.00 0.00 0.00 3.16
5013 5220 6.092955 TGGAGTTGTTGTAGTAGTAGTTGG 57.907 41.667 0.00 0.00 0.00 3.77
5014 5221 5.834742 TGGAGTTGTTGTAGTAGTAGTTGGA 59.165 40.000 0.00 0.00 0.00 3.53
5015 5222 6.155136 GGAGTTGTTGTAGTAGTAGTTGGAC 58.845 44.000 0.00 0.00 0.00 4.02
5016 5223 6.239120 GGAGTTGTTGTAGTAGTAGTTGGACA 60.239 42.308 0.00 0.00 0.00 4.02
5017 5224 7.116075 AGTTGTTGTAGTAGTAGTTGGACAA 57.884 36.000 0.00 0.00 0.00 3.18
5018 5225 7.732996 AGTTGTTGTAGTAGTAGTTGGACAAT 58.267 34.615 0.00 0.00 0.00 2.71
5019 5226 8.863086 AGTTGTTGTAGTAGTAGTTGGACAATA 58.137 33.333 0.00 0.00 0.00 1.90
5020 5227 9.136952 GTTGTTGTAGTAGTAGTTGGACAATAG 57.863 37.037 0.00 0.00 0.00 1.73
5021 5228 8.413309 TGTTGTAGTAGTAGTTGGACAATAGT 57.587 34.615 0.00 0.00 0.00 2.12
5022 5229 9.519191 TGTTGTAGTAGTAGTTGGACAATAGTA 57.481 33.333 0.00 0.00 0.00 1.82
5023 5230 9.780413 GTTGTAGTAGTAGTTGGACAATAGTAC 57.220 37.037 0.00 0.00 0.00 2.73
5024 5231 9.519191 TTGTAGTAGTAGTTGGACAATAGTACA 57.481 33.333 0.00 11.15 36.60 2.90
5025 5232 9.170734 TGTAGTAGTAGTTGGACAATAGTACAG 57.829 37.037 0.00 0.00 40.39 2.74
5026 5233 7.642082 AGTAGTAGTTGGACAATAGTACAGG 57.358 40.000 0.00 0.00 40.39 4.00
5027 5234 7.180663 AGTAGTAGTTGGACAATAGTACAGGT 58.819 38.462 0.00 0.00 40.39 4.00
5028 5235 8.331740 AGTAGTAGTTGGACAATAGTACAGGTA 58.668 37.037 0.00 0.00 40.39 3.08
5029 5236 7.642082 AGTAGTTGGACAATAGTACAGGTAG 57.358 40.000 0.00 0.00 40.39 3.18
5030 5237 5.340439 AGTTGGACAATAGTACAGGTAGC 57.660 43.478 0.00 0.00 40.39 3.58
5031 5238 4.161754 AGTTGGACAATAGTACAGGTAGCC 59.838 45.833 0.00 0.00 40.39 3.93
5032 5239 3.036091 TGGACAATAGTACAGGTAGCCC 58.964 50.000 0.00 0.00 32.29 5.19
5033 5240 2.367894 GGACAATAGTACAGGTAGCCCC 59.632 54.545 0.00 0.00 0.00 5.80
5034 5241 2.035576 GACAATAGTACAGGTAGCCCCG 59.964 54.545 0.00 0.00 38.74 5.73
5035 5242 2.313317 CAATAGTACAGGTAGCCCCGA 58.687 52.381 0.00 0.00 38.74 5.14
5036 5243 2.696707 CAATAGTACAGGTAGCCCCGAA 59.303 50.000 0.00 0.00 38.74 4.30
5037 5244 1.767759 TAGTACAGGTAGCCCCGAAC 58.232 55.000 0.00 0.00 38.74 3.95
5038 5245 0.251922 AGTACAGGTAGCCCCGAACA 60.252 55.000 0.00 0.00 38.74 3.18
5039 5246 0.175073 GTACAGGTAGCCCCGAACAG 59.825 60.000 0.00 0.00 38.74 3.16
5040 5247 0.040058 TACAGGTAGCCCCGAACAGA 59.960 55.000 0.00 0.00 38.74 3.41
5041 5248 1.258445 ACAGGTAGCCCCGAACAGAG 61.258 60.000 0.00 0.00 38.74 3.35
5042 5249 1.686110 AGGTAGCCCCGAACAGAGG 60.686 63.158 0.00 0.00 38.74 3.69
5043 5250 1.988406 GGTAGCCCCGAACAGAGGT 60.988 63.158 0.00 0.00 0.00 3.85
5044 5251 1.218316 GTAGCCCCGAACAGAGGTG 59.782 63.158 0.00 0.00 0.00 4.00
5045 5252 1.987855 TAGCCCCGAACAGAGGTGG 60.988 63.158 0.00 0.00 0.00 4.61
5047 5254 4.760047 CCCCGAACAGAGGTGGCG 62.760 72.222 0.00 0.00 0.00 5.69
5048 5255 4.760047 CCCGAACAGAGGTGGCGG 62.760 72.222 0.00 0.00 42.27 6.13
5049 5256 4.003788 CCGAACAGAGGTGGCGGT 62.004 66.667 0.00 0.00 39.54 5.68
5050 5257 2.738521 CGAACAGAGGTGGCGGTG 60.739 66.667 0.00 0.00 0.00 4.94
5051 5258 2.358737 GAACAGAGGTGGCGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
5052 5259 4.643387 AACAGAGGTGGCGGTGGC 62.643 66.667 0.00 0.00 38.90 5.01
5054 5261 4.641645 CAGAGGTGGCGGTGGCAA 62.642 66.667 0.00 0.00 40.46 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.388499 GCGGGTTTCAGGGAGCGA 62.388 66.667 0.00 0.00 0.00 4.93
1 2 4.697756 TGCGGGTTTCAGGGAGCG 62.698 66.667 0.00 0.00 0.00 5.03
2 3 2.747855 CTGCGGGTTTCAGGGAGC 60.748 66.667 0.00 0.00 0.00 4.70
13 14 0.804989 GATTCTGTGGTTTCTGCGGG 59.195 55.000 0.00 0.00 0.00 6.13
69 78 8.655651 TCGTAATAATGCATTGTAGATGTTCA 57.344 30.769 22.27 0.00 0.00 3.18
77 86 6.822442 TCCTTCCTCGTAATAATGCATTGTA 58.178 36.000 22.27 10.94 0.00 2.41
102 111 3.997021 TCTGCTCCGATGTTTCTTTTCTC 59.003 43.478 0.00 0.00 0.00 2.87
108 117 2.839486 TGTTCTGCTCCGATGTTTCT 57.161 45.000 0.00 0.00 0.00 2.52
111 120 2.839486 TCTTGTTCTGCTCCGATGTT 57.161 45.000 0.00 0.00 0.00 2.71
112 121 2.613977 CCTTCTTGTTCTGCTCCGATGT 60.614 50.000 0.00 0.00 0.00 3.06
161 170 1.227002 GGTCCTGAAGATCCGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
302 314 3.919216 TCCGCAAGAGAGAGAAAGAAAG 58.081 45.455 0.00 0.00 43.02 2.62
306 318 1.821753 TCCTCCGCAAGAGAGAGAAAG 59.178 52.381 2.33 0.00 46.50 2.62
308 320 1.178276 GTCCTCCGCAAGAGAGAGAA 58.822 55.000 2.33 0.00 46.50 2.87
334 346 1.586154 AAAAACTCCAGCCATCCGCG 61.586 55.000 0.00 0.00 44.76 6.46
411 427 3.009115 CCTCCTTTCCGCCTCCCA 61.009 66.667 0.00 0.00 0.00 4.37
472 488 2.324860 GACGTATGCAACTTTTTGGCC 58.675 47.619 0.00 0.00 32.81 5.36
474 490 3.634568 TGGACGTATGCAACTTTTTGG 57.365 42.857 0.00 0.00 32.81 3.28
476 492 5.446143 TTCATGGACGTATGCAACTTTTT 57.554 34.783 0.00 0.00 0.00 1.94
478 494 5.446143 TTTTCATGGACGTATGCAACTTT 57.554 34.783 0.00 0.00 0.00 2.66
479 495 5.446143 TTTTTCATGGACGTATGCAACTT 57.554 34.783 0.00 0.00 0.00 2.66
701 730 4.630644 AGAGAGAGAGAGAGCATAGGAG 57.369 50.000 0.00 0.00 0.00 3.69
702 731 4.503123 CGAAGAGAGAGAGAGAGCATAGGA 60.503 50.000 0.00 0.00 0.00 2.94
703 732 3.748048 CGAAGAGAGAGAGAGAGCATAGG 59.252 52.174 0.00 0.00 0.00 2.57
704 733 3.748048 CCGAAGAGAGAGAGAGAGCATAG 59.252 52.174 0.00 0.00 0.00 2.23
705 734 3.135712 ACCGAAGAGAGAGAGAGAGCATA 59.864 47.826 0.00 0.00 0.00 3.14
706 735 2.092429 ACCGAAGAGAGAGAGAGAGCAT 60.092 50.000 0.00 0.00 0.00 3.79
707 736 1.280710 ACCGAAGAGAGAGAGAGAGCA 59.719 52.381 0.00 0.00 0.00 4.26
708 737 2.038387 ACCGAAGAGAGAGAGAGAGC 57.962 55.000 0.00 0.00 0.00 4.09
776 805 8.693120 TTTTGTTTAGTGTCTAGAGAGAGAGA 57.307 34.615 0.00 0.00 30.20 3.10
782 815 6.014499 CCCCTCTTTTGTTTAGTGTCTAGAGA 60.014 42.308 0.00 0.00 31.76 3.10
787 820 4.100279 CCCCCTCTTTTGTTTAGTGTCT 57.900 45.455 0.00 0.00 0.00 3.41
809 853 0.238553 GGTGGTGCGAGCTTTTCTTC 59.761 55.000 0.00 0.00 0.00 2.87
821 865 2.297701 CTATATGGTGTTGGGTGGTGC 58.702 52.381 0.00 0.00 0.00 5.01
908 953 1.798813 CGGATTTCTTGGATTTGCGGC 60.799 52.381 0.00 0.00 0.00 6.53
1059 1124 4.828925 GCCGTCTCAGCAGCTCCC 62.829 72.222 0.00 0.00 0.00 4.30
2399 2473 4.035102 GGGAGGTGTGGAGTGGGC 62.035 72.222 0.00 0.00 0.00 5.36
2428 2503 8.571336 GCAGTCTAGTTATGATGCCAATTTAAT 58.429 33.333 0.00 0.00 0.00 1.40
2429 2504 7.775093 AGCAGTCTAGTTATGATGCCAATTTAA 59.225 33.333 0.00 0.00 34.24 1.52
2430 2505 7.282585 AGCAGTCTAGTTATGATGCCAATTTA 58.717 34.615 0.00 0.00 34.24 1.40
2431 2506 6.125029 AGCAGTCTAGTTATGATGCCAATTT 58.875 36.000 0.00 0.00 34.24 1.82
2436 2511 5.848406 ACTAAGCAGTCTAGTTATGATGCC 58.152 41.667 0.00 0.00 34.24 4.40
2450 2525 3.257624 GTGGTGGTACAGTACTAAGCAGT 59.742 47.826 10.62 0.00 41.80 4.40
2497 2572 2.224066 CCGCTAGAATCTAGGTTGTGGG 60.224 54.545 17.99 1.44 0.00 4.61
2531 2608 2.837591 GTTAATCAATGGGGGCAGGTTT 59.162 45.455 0.00 0.00 0.00 3.27
2612 2689 3.692370 GATTAACCCCCGCCGCACT 62.692 63.158 0.00 0.00 0.00 4.40
2613 2690 2.314415 TAGATTAACCCCCGCCGCAC 62.314 60.000 0.00 0.00 0.00 5.34
2614 2691 1.412453 ATAGATTAACCCCCGCCGCA 61.412 55.000 0.00 0.00 0.00 5.69
2615 2692 0.672711 GATAGATTAACCCCCGCCGC 60.673 60.000 0.00 0.00 0.00 6.53
2741 2823 0.313987 GGGAAAACCAAACCTCTGCG 59.686 55.000 0.00 0.00 39.85 5.18
2749 2831 4.287326 ACAAAACTCCAAGGGAAAACCAAA 59.713 37.500 0.00 0.00 43.89 3.28
2771 2853 4.035675 GGAGTATTTAATCTGTGGCTGCAC 59.964 45.833 0.50 0.00 0.00 4.57
2832 2917 0.327924 ACGGAGTTGATGCCAATGGA 59.672 50.000 2.05 0.00 37.78 3.41
2840 2925 2.226437 CCAAGTTTCCACGGAGTTGATG 59.774 50.000 6.51 0.00 41.61 3.07
2843 2928 1.602377 GTCCAAGTTTCCACGGAGTTG 59.398 52.381 0.00 0.00 41.61 3.16
2844 2929 1.808891 CGTCCAAGTTTCCACGGAGTT 60.809 52.381 0.00 0.00 41.61 3.01
2847 2932 4.762825 CGTCCAAGTTTCCACGGA 57.237 55.556 0.00 0.00 0.00 4.69
2848 2933 3.650369 CCGTCCAAGTTTCCACGG 58.350 61.111 3.32 3.32 45.38 4.94
2849 2934 2.088950 ATACCGTCCAAGTTTCCACG 57.911 50.000 0.00 0.00 0.00 4.94
2863 2970 6.013639 ACCCCTATGGATTCTTTCTAATACCG 60.014 42.308 0.00 0.00 38.00 4.02
2868 2975 8.814448 ATTCTACCCCTATGGATTCTTTCTAA 57.186 34.615 0.00 0.00 38.00 2.10
2871 2978 8.661345 AGTTATTCTACCCCTATGGATTCTTTC 58.339 37.037 0.00 0.00 38.00 2.62
2872 2979 8.440771 CAGTTATTCTACCCCTATGGATTCTTT 58.559 37.037 0.00 0.00 38.00 2.52
2873 2980 7.794683 TCAGTTATTCTACCCCTATGGATTCTT 59.205 37.037 0.00 0.00 38.00 2.52
2878 2985 4.838986 GCTCAGTTATTCTACCCCTATGGA 59.161 45.833 0.00 0.00 38.00 3.41
2883 2990 3.995636 TCAGCTCAGTTATTCTACCCCT 58.004 45.455 0.00 0.00 0.00 4.79
2912 3019 3.406361 CACAGCGCGTGGTGACTC 61.406 66.667 32.56 0.00 46.53 3.36
2919 3026 1.565156 AACATACACCACAGCGCGTG 61.565 55.000 20.50 20.50 45.92 5.34
2920 3027 1.301401 AACATACACCACAGCGCGT 60.301 52.632 8.43 0.00 0.00 6.01
2921 3028 1.132436 CAACATACACCACAGCGCG 59.868 57.895 0.00 0.00 0.00 6.86
2923 3030 0.516877 CACCAACATACACCACAGCG 59.483 55.000 0.00 0.00 0.00 5.18
2925 3032 1.202879 ACCCACCAACATACACCACAG 60.203 52.381 0.00 0.00 0.00 3.66
2926 3033 0.847373 ACCCACCAACATACACCACA 59.153 50.000 0.00 0.00 0.00 4.17
2930 3037 2.151202 CAGTGACCCACCAACATACAC 58.849 52.381 0.00 0.00 34.49 2.90
2931 3038 1.771854 ACAGTGACCCACCAACATACA 59.228 47.619 0.00 0.00 34.49 2.29
2932 3039 2.038557 AGACAGTGACCCACCAACATAC 59.961 50.000 0.00 0.00 34.49 2.39
2933 3040 2.334977 AGACAGTGACCCACCAACATA 58.665 47.619 0.00 0.00 34.49 2.29
2934 3041 1.140312 AGACAGTGACCCACCAACAT 58.860 50.000 0.00 0.00 34.49 2.71
2989 3096 0.820482 TGAGCTGAGCTTGCTTTGCA 60.820 50.000 9.00 0.00 39.88 4.08
2990 3097 0.109689 CTGAGCTGAGCTTGCTTTGC 60.110 55.000 9.00 10.96 39.88 3.68
2991 3098 1.520494 TCTGAGCTGAGCTTGCTTTG 58.480 50.000 9.00 11.17 39.88 2.77
2992 3099 2.027007 AGATCTGAGCTGAGCTTGCTTT 60.027 45.455 9.00 0.00 39.88 3.51
3014 3121 1.609061 CGTGAAGAAGACACAGGCCAT 60.609 52.381 5.01 0.00 38.04 4.40
3075 3182 1.817099 GCATCAGGCTTCGGTCTGG 60.817 63.158 0.00 0.00 46.71 3.86
3209 3316 7.039434 TGCAGGGTTTAATCATGTGTCAATAAA 60.039 33.333 0.00 0.00 0.00 1.40
3287 3396 7.496920 GGTTACCACACAGGAGTTATTTATACC 59.503 40.741 0.00 0.00 41.22 2.73
3358 3482 5.129155 AGGCAATACGGTATACACAAACCTA 59.871 40.000 5.01 0.00 33.34 3.08
3359 3483 4.080751 AGGCAATACGGTATACACAAACCT 60.081 41.667 5.01 0.00 33.34 3.50
3361 3485 5.811613 TGTAGGCAATACGGTATACACAAAC 59.188 40.000 5.01 0.00 37.17 2.93
3364 3488 5.595257 TTGTAGGCAATACGGTATACACA 57.405 39.130 5.01 0.00 37.17 3.72
3365 3489 7.148689 GCTATTTGTAGGCAATACGGTATACAC 60.149 40.741 5.01 0.00 37.17 2.90
3366 3490 6.869913 GCTATTTGTAGGCAATACGGTATACA 59.130 38.462 5.01 0.00 37.17 2.29
3367 3491 6.869913 TGCTATTTGTAGGCAATACGGTATAC 59.130 38.462 0.22 0.00 37.17 1.47
3368 3492 6.995364 TGCTATTTGTAGGCAATACGGTATA 58.005 36.000 0.22 0.00 37.17 1.47
3369 3493 5.860611 TGCTATTTGTAGGCAATACGGTAT 58.139 37.500 0.00 0.00 37.17 2.73
3370 3494 5.279255 TGCTATTTGTAGGCAATACGGTA 57.721 39.130 0.00 0.00 37.17 4.02
3371 3495 4.145365 TGCTATTTGTAGGCAATACGGT 57.855 40.909 0.00 0.00 37.17 4.83
3594 3730 2.240667 CAGGGAAATCACAGGAGGTCAT 59.759 50.000 0.00 0.00 0.00 3.06
3595 3731 1.630369 CAGGGAAATCACAGGAGGTCA 59.370 52.381 0.00 0.00 0.00 4.02
3596 3732 1.680249 GCAGGGAAATCACAGGAGGTC 60.680 57.143 0.00 0.00 0.00 3.85
3597 3733 0.329596 GCAGGGAAATCACAGGAGGT 59.670 55.000 0.00 0.00 0.00 3.85
3611 3747 0.933097 CTCATGTCGAAATCGCAGGG 59.067 55.000 10.30 4.70 39.60 4.45
3656 3794 4.195416 GCAGGTGAAAAGAGGAGGAATAG 58.805 47.826 0.00 0.00 0.00 1.73
3665 3803 0.886490 ACGGCTGCAGGTGAAAAGAG 60.886 55.000 17.12 0.00 0.00 2.85
3667 3805 0.318107 CAACGGCTGCAGGTGAAAAG 60.318 55.000 17.12 0.00 0.00 2.27
3688 3851 3.362706 TCTTGTCTATGCTAGGGACGTT 58.637 45.455 0.00 0.00 33.21 3.99
3690 3853 3.319405 ACATCTTGTCTATGCTAGGGACG 59.681 47.826 0.00 0.00 33.21 4.79
3744 3907 0.107456 CCTGCTGCCTACTATGTGGG 59.893 60.000 0.00 0.00 37.24 4.61
3840 4006 1.475213 GGAGTTGGGGAATCGATGTCC 60.475 57.143 14.62 14.62 0.00 4.02
4055 4221 1.346068 CGAATCCTTCCTCCCATCCTC 59.654 57.143 0.00 0.00 0.00 3.71
4146 4317 3.767816 CTGGCTCCAAGCAAGCAA 58.232 55.556 0.86 0.00 44.75 3.91
4207 4391 6.037172 CCGCCATTATTCCATAGCAGTATAAC 59.963 42.308 0.00 0.00 0.00 1.89
4215 4399 1.004277 TCCCCGCCATTATTCCATAGC 59.996 52.381 0.00 0.00 0.00 2.97
4230 4415 1.816224 CCACCAGTTTTACATTCCCCG 59.184 52.381 0.00 0.00 0.00 5.73
4245 4430 0.681564 GGACACACCAACAACCACCA 60.682 55.000 0.00 0.00 38.79 4.17
4270 4455 7.643579 ACAATTCTTTTTCTTCTTCTTCCTCG 58.356 34.615 0.00 0.00 0.00 4.63
4271 4456 9.809096 AAACAATTCTTTTTCTTCTTCTTCCTC 57.191 29.630 0.00 0.00 0.00 3.71
4303 4489 6.155221 ACATACACAGAAGATCTTAGCCTTCA 59.845 38.462 8.25 0.00 40.78 3.02
4312 4498 7.502895 ACGTTCCTATACATACACAGAAGATCT 59.497 37.037 0.00 0.00 0.00 2.75
4348 4542 2.401720 CGCAAAGAATGACGAGCAAAAC 59.598 45.455 0.00 0.00 32.61 2.43
4349 4543 2.032799 ACGCAAAGAATGACGAGCAAAA 59.967 40.909 0.00 0.00 34.24 2.44
4352 4546 0.790207 GACGCAAAGAATGACGAGCA 59.210 50.000 0.00 0.00 34.24 4.26
4353 4547 1.071605 AGACGCAAAGAATGACGAGC 58.928 50.000 0.00 0.00 34.24 5.03
4354 4548 2.061773 ACAGACGCAAAGAATGACGAG 58.938 47.619 0.00 0.00 34.24 4.18
4355 4549 2.148916 ACAGACGCAAAGAATGACGA 57.851 45.000 0.00 0.00 34.24 4.20
4356 4550 2.949714 AACAGACGCAAAGAATGACG 57.050 45.000 0.00 0.00 35.57 4.35
4398 4592 3.214328 GCAACCTTCTTCACTCCAGAAA 58.786 45.455 0.00 0.00 29.74 2.52
4422 4616 7.722363 ACACTTTAAACTTTTAACCCATCCAG 58.278 34.615 0.00 0.00 32.77 3.86
4440 4642 6.256643 ACCCTTTTCTCCTACAACACTTTA 57.743 37.500 0.00 0.00 0.00 1.85
4455 4657 8.168790 TGTATAGTTGTACCAAAACCCTTTTC 57.831 34.615 0.00 0.00 0.00 2.29
4636 4840 0.106708 TTCGCACAGCTGTCTTCCTT 59.893 50.000 18.64 0.00 0.00 3.36
4668 4872 1.164041 ACCTGCCTTTTGTCCGTTCG 61.164 55.000 0.00 0.00 0.00 3.95
4700 4904 9.707957 AGCATCTATAGTTGGCTACTCTATAAT 57.292 33.333 4.51 0.00 38.33 1.28
4701 4905 9.535170 AAGCATCTATAGTTGGCTACTCTATAA 57.465 33.333 4.51 0.00 38.33 0.98
4702 4906 8.961634 CAAGCATCTATAGTTGGCTACTCTATA 58.038 37.037 4.51 0.00 38.33 1.31
4703 4907 7.578571 GCAAGCATCTATAGTTGGCTACTCTAT 60.579 40.741 4.51 0.00 38.33 1.98
4704 4908 6.294787 GCAAGCATCTATAGTTGGCTACTCTA 60.295 42.308 4.51 0.00 38.33 2.43
4706 4910 4.688413 GCAAGCATCTATAGTTGGCTACTC 59.312 45.833 4.51 0.00 38.33 2.59
4707 4911 4.346418 AGCAAGCATCTATAGTTGGCTACT 59.654 41.667 6.84 6.84 41.04 2.57
4708 4912 4.636249 AGCAAGCATCTATAGTTGGCTAC 58.364 43.478 11.81 9.20 33.80 3.58
4709 4913 4.262635 GGAGCAAGCATCTATAGTTGGCTA 60.263 45.833 11.81 0.00 33.80 3.93
4710 4914 3.495806 GGAGCAAGCATCTATAGTTGGCT 60.496 47.826 11.81 11.30 36.13 4.75
4711 4915 2.810852 GGAGCAAGCATCTATAGTTGGC 59.189 50.000 11.81 8.45 0.00 4.52
4712 4916 4.077300 TGGAGCAAGCATCTATAGTTGG 57.923 45.455 11.81 0.00 0.00 3.77
4713 4917 5.121811 AGTTGGAGCAAGCATCTATAGTTG 58.878 41.667 6.46 6.46 0.00 3.16
4715 4919 6.098982 ACTTAGTTGGAGCAAGCATCTATAGT 59.901 38.462 0.00 0.00 0.00 2.12
4716 4920 6.520272 ACTTAGTTGGAGCAAGCATCTATAG 58.480 40.000 0.00 0.00 0.00 1.31
4717 4921 6.485830 ACTTAGTTGGAGCAAGCATCTATA 57.514 37.500 0.00 0.00 0.00 1.31
4742 4946 5.900425 TCTCTCTCTGCTTAATTGCTACAG 58.100 41.667 0.00 0.00 0.00 2.74
4743 4947 5.921962 TCTCTCTCTGCTTAATTGCTACA 57.078 39.130 0.00 0.00 0.00 2.74
4774 4981 6.433404 CCCCCTTGCGTCGATATACTATATAT 59.567 42.308 0.00 0.00 0.00 0.86
4778 4985 2.758979 CCCCCTTGCGTCGATATACTAT 59.241 50.000 0.00 0.00 0.00 2.12
4779 4986 2.165167 CCCCCTTGCGTCGATATACTA 58.835 52.381 0.00 0.00 0.00 1.82
4781 4988 3.509388 CCCCCTTGCGTCGATATAC 57.491 57.895 0.00 0.00 0.00 1.47
4799 5006 4.874970 AGCAAAGTCAAATCACATTCACC 58.125 39.130 0.00 0.00 0.00 4.02
4832 5039 5.482908 CCGGGAGATTGACCATAAGATAAG 58.517 45.833 0.00 0.00 0.00 1.73
4834 5041 3.838317 CCCGGGAGATTGACCATAAGATA 59.162 47.826 18.48 0.00 0.00 1.98
4835 5042 2.639839 CCCGGGAGATTGACCATAAGAT 59.360 50.000 18.48 0.00 0.00 2.40
4836 5043 2.047061 CCCGGGAGATTGACCATAAGA 58.953 52.381 18.48 0.00 0.00 2.10
4837 5044 1.543429 GCCCGGGAGATTGACCATAAG 60.543 57.143 29.31 0.00 0.00 1.73
4838 5045 0.472471 GCCCGGGAGATTGACCATAA 59.528 55.000 29.31 0.00 0.00 1.90
4839 5046 0.399949 AGCCCGGGAGATTGACCATA 60.400 55.000 29.31 0.00 0.00 2.74
4840 5047 1.694169 AGCCCGGGAGATTGACCAT 60.694 57.895 29.31 0.00 0.00 3.55
4841 5048 2.285368 AGCCCGGGAGATTGACCA 60.285 61.111 29.31 0.00 0.00 4.02
4842 5049 2.506472 GAGCCCGGGAGATTGACC 59.494 66.667 29.31 2.84 0.00 4.02
4843 5050 2.506472 GGAGCCCGGGAGATTGAC 59.494 66.667 29.31 3.77 0.00 3.18
4844 5051 2.768344 GGGAGCCCGGGAGATTGA 60.768 66.667 29.31 0.00 0.00 2.57
4857 5064 4.436998 GGTGTCTGACGCCGGGAG 62.437 72.222 23.20 0.00 39.19 4.30
4863 5070 0.528017 TCATCTGAGGTGTCTGACGC 59.472 55.000 12.78 12.78 33.84 5.19
4864 5071 2.558265 CTCATCTGAGGTGTCTGACG 57.442 55.000 2.98 0.00 38.48 4.35
4874 5081 6.577103 TGACTAATTAGCAACCTCATCTGAG 58.423 40.000 12.54 0.00 41.71 3.35
4875 5082 6.155221 ACTGACTAATTAGCAACCTCATCTGA 59.845 38.462 12.54 0.00 0.00 3.27
4876 5083 6.344500 ACTGACTAATTAGCAACCTCATCTG 58.656 40.000 12.54 6.60 0.00 2.90
4877 5084 6.552445 ACTGACTAATTAGCAACCTCATCT 57.448 37.500 12.54 0.00 0.00 2.90
4878 5085 5.460419 CGACTGACTAATTAGCAACCTCATC 59.540 44.000 12.54 0.94 0.00 2.92
4879 5086 5.352284 CGACTGACTAATTAGCAACCTCAT 58.648 41.667 12.54 0.09 0.00 2.90
4880 5087 4.381612 CCGACTGACTAATTAGCAACCTCA 60.382 45.833 12.54 7.37 0.00 3.86
4881 5088 4.113354 CCGACTGACTAATTAGCAACCTC 58.887 47.826 12.54 3.02 0.00 3.85
4882 5089 3.679083 GCCGACTGACTAATTAGCAACCT 60.679 47.826 12.54 0.00 0.00 3.50
4883 5090 2.608090 GCCGACTGACTAATTAGCAACC 59.392 50.000 12.54 5.60 0.00 3.77
4884 5091 3.062234 GTGCCGACTGACTAATTAGCAAC 59.938 47.826 12.54 5.36 0.00 4.17
4885 5092 3.259064 GTGCCGACTGACTAATTAGCAA 58.741 45.455 12.54 0.19 0.00 3.91
4886 5093 2.232696 TGTGCCGACTGACTAATTAGCA 59.767 45.455 12.54 10.23 0.00 3.49
4887 5094 2.888594 TGTGCCGACTGACTAATTAGC 58.111 47.619 12.54 6.22 0.00 3.09
4888 5095 4.242475 TGTTGTGCCGACTGACTAATTAG 58.758 43.478 11.05 11.05 0.00 1.73
4889 5096 4.242475 CTGTTGTGCCGACTGACTAATTA 58.758 43.478 0.00 0.00 0.00 1.40
4890 5097 3.067106 CTGTTGTGCCGACTGACTAATT 58.933 45.455 0.00 0.00 0.00 1.40
4891 5098 2.688507 CTGTTGTGCCGACTGACTAAT 58.311 47.619 0.00 0.00 0.00 1.73
4892 5099 1.872237 GCTGTTGTGCCGACTGACTAA 60.872 52.381 0.00 0.00 0.00 2.24
4893 5100 0.319555 GCTGTTGTGCCGACTGACTA 60.320 55.000 0.00 0.00 0.00 2.59
4894 5101 1.595382 GCTGTTGTGCCGACTGACT 60.595 57.895 0.00 0.00 0.00 3.41
4895 5102 1.436195 TTGCTGTTGTGCCGACTGAC 61.436 55.000 0.00 0.00 0.00 3.51
4896 5103 0.746204 TTTGCTGTTGTGCCGACTGA 60.746 50.000 0.00 0.00 0.00 3.41
4897 5104 0.317269 CTTTGCTGTTGTGCCGACTG 60.317 55.000 0.00 0.00 0.00 3.51
4898 5105 2.024918 CTTTGCTGTTGTGCCGACT 58.975 52.632 0.00 0.00 0.00 4.18
4899 5106 1.658409 GCTTTGCTGTTGTGCCGAC 60.658 57.895 0.00 0.00 0.00 4.79
4900 5107 2.721231 GCTTTGCTGTTGTGCCGA 59.279 55.556 0.00 0.00 0.00 5.54
4901 5108 2.111932 TACGCTTTGCTGTTGTGCCG 62.112 55.000 0.00 0.00 0.00 5.69
4902 5109 0.385974 CTACGCTTTGCTGTTGTGCC 60.386 55.000 0.00 0.00 0.00 5.01
4903 5110 0.998727 GCTACGCTTTGCTGTTGTGC 60.999 55.000 0.00 0.00 0.00 4.57
4904 5111 0.588252 AGCTACGCTTTGCTGTTGTG 59.412 50.000 0.00 0.00 33.89 3.33
4905 5112 3.006672 AGCTACGCTTTGCTGTTGT 57.993 47.368 0.00 0.00 33.89 3.32
4921 5128 0.581529 TGCGCGTGATAAGCATAAGC 59.418 50.000 8.43 0.00 42.56 3.09
4922 5129 1.193203 CCTGCGCGTGATAAGCATAAG 59.807 52.381 8.43 0.00 40.35 1.73
4923 5130 1.217001 CCTGCGCGTGATAAGCATAA 58.783 50.000 8.43 0.00 40.35 1.90
4924 5131 0.599991 CCCTGCGCGTGATAAGCATA 60.600 55.000 8.43 0.00 40.35 3.14
4925 5132 1.889105 CCCTGCGCGTGATAAGCAT 60.889 57.895 8.43 0.00 40.35 3.79
4926 5133 2.511373 CCCTGCGCGTGATAAGCA 60.511 61.111 8.43 0.00 39.25 3.91
4927 5134 3.941836 GCCCTGCGCGTGATAAGC 61.942 66.667 8.43 0.00 0.00 3.09
4928 5135 3.272334 GGCCCTGCGCGTGATAAG 61.272 66.667 8.43 0.00 38.94 1.73
4929 5136 3.399105 ATGGCCCTGCGCGTGATAA 62.399 57.895 8.43 0.00 38.94 1.75
4930 5137 3.807631 GATGGCCCTGCGCGTGATA 62.808 63.158 8.43 0.00 38.94 2.15
4936 5143 2.591715 ATTACGATGGCCCTGCGC 60.592 61.111 0.00 0.00 0.00 6.09
4937 5144 1.523711 ACATTACGATGGCCCTGCG 60.524 57.895 0.00 3.49 37.60 5.18
4938 5145 0.748005 ACACATTACGATGGCCCTGC 60.748 55.000 0.00 0.00 37.60 4.85
4939 5146 1.016627 CACACATTACGATGGCCCTG 58.983 55.000 0.00 0.00 37.60 4.45
4940 5147 0.908910 TCACACATTACGATGGCCCT 59.091 50.000 0.00 0.00 37.60 5.19
4941 5148 1.745232 TTCACACATTACGATGGCCC 58.255 50.000 0.00 0.00 37.60 5.80
4942 5149 2.032894 CGATTCACACATTACGATGGCC 60.033 50.000 0.00 0.00 37.60 5.36
4943 5150 2.863740 TCGATTCACACATTACGATGGC 59.136 45.455 0.00 0.00 37.60 4.40
4944 5151 3.490896 CCTCGATTCACACATTACGATGG 59.509 47.826 0.00 0.00 37.60 3.51
4945 5152 4.112634 ACCTCGATTCACACATTACGATG 58.887 43.478 0.00 0.00 39.25 3.84
4946 5153 4.386867 ACCTCGATTCACACATTACGAT 57.613 40.909 0.00 0.00 0.00 3.73
4947 5154 3.861276 ACCTCGATTCACACATTACGA 57.139 42.857 0.00 0.00 0.00 3.43
4948 5155 4.387559 TCAAACCTCGATTCACACATTACG 59.612 41.667 0.00 0.00 0.00 3.18
4949 5156 5.856126 TCAAACCTCGATTCACACATTAC 57.144 39.130 0.00 0.00 0.00 1.89
4950 5157 6.406370 AGATCAAACCTCGATTCACACATTA 58.594 36.000 0.00 0.00 0.00 1.90
4951 5158 5.248640 AGATCAAACCTCGATTCACACATT 58.751 37.500 0.00 0.00 0.00 2.71
4952 5159 4.836825 AGATCAAACCTCGATTCACACAT 58.163 39.130 0.00 0.00 0.00 3.21
4953 5160 4.021104 AGAGATCAAACCTCGATTCACACA 60.021 41.667 0.00 0.00 35.88 3.72
4954 5161 4.499183 AGAGATCAAACCTCGATTCACAC 58.501 43.478 0.00 0.00 35.88 3.82
4955 5162 4.808414 AGAGATCAAACCTCGATTCACA 57.192 40.909 0.00 0.00 35.88 3.58
4956 5163 6.507900 TGATAGAGATCAAACCTCGATTCAC 58.492 40.000 0.00 0.00 39.20 3.18
4957 5164 6.322456 ACTGATAGAGATCAAACCTCGATTCA 59.678 38.462 0.00 0.00 41.62 2.57
4958 5165 6.744112 ACTGATAGAGATCAAACCTCGATTC 58.256 40.000 0.00 0.00 41.62 2.52
4959 5166 6.723298 ACTGATAGAGATCAAACCTCGATT 57.277 37.500 0.00 0.00 41.62 3.34
4960 5167 7.825331 TTACTGATAGAGATCAAACCTCGAT 57.175 36.000 0.00 0.00 41.62 3.59
4961 5168 7.481642 GTTTACTGATAGAGATCAAACCTCGA 58.518 38.462 0.00 0.00 41.62 4.04
4962 5169 6.415280 CGTTTACTGATAGAGATCAAACCTCG 59.585 42.308 0.00 0.00 41.62 4.63
4963 5170 7.481642 TCGTTTACTGATAGAGATCAAACCTC 58.518 38.462 0.00 0.00 41.62 3.85
4964 5171 7.406031 TCGTTTACTGATAGAGATCAAACCT 57.594 36.000 0.00 0.00 41.62 3.50
4965 5172 8.543774 CATTCGTTTACTGATAGAGATCAAACC 58.456 37.037 0.00 0.00 41.62 3.27
4966 5173 8.543774 CCATTCGTTTACTGATAGAGATCAAAC 58.456 37.037 0.00 0.00 41.62 2.93
4967 5174 8.474831 TCCATTCGTTTACTGATAGAGATCAAA 58.525 33.333 0.00 0.00 41.62 2.69
4968 5175 8.007405 TCCATTCGTTTACTGATAGAGATCAA 57.993 34.615 0.00 0.00 41.62 2.57
4969 5176 7.285629 ACTCCATTCGTTTACTGATAGAGATCA 59.714 37.037 0.00 0.00 39.88 2.92
4970 5177 7.653647 ACTCCATTCGTTTACTGATAGAGATC 58.346 38.462 0.00 0.00 0.00 2.75
4971 5178 7.589958 ACTCCATTCGTTTACTGATAGAGAT 57.410 36.000 0.00 0.00 0.00 2.75
4972 5179 7.093902 ACAACTCCATTCGTTTACTGATAGAGA 60.094 37.037 0.00 0.00 0.00 3.10
4973 5180 7.036220 ACAACTCCATTCGTTTACTGATAGAG 58.964 38.462 0.00 0.00 0.00 2.43
4974 5181 6.931838 ACAACTCCATTCGTTTACTGATAGA 58.068 36.000 0.00 0.00 0.00 1.98
4975 5182 7.117812 ACAACAACTCCATTCGTTTACTGATAG 59.882 37.037 0.00 0.00 0.00 2.08
4976 5183 6.932400 ACAACAACTCCATTCGTTTACTGATA 59.068 34.615 0.00 0.00 0.00 2.15
4977 5184 5.763204 ACAACAACTCCATTCGTTTACTGAT 59.237 36.000 0.00 0.00 0.00 2.90
4978 5185 5.120399 ACAACAACTCCATTCGTTTACTGA 58.880 37.500 0.00 0.00 0.00 3.41
4979 5186 5.418310 ACAACAACTCCATTCGTTTACTG 57.582 39.130 0.00 0.00 0.00 2.74
4980 5187 6.285990 ACTACAACAACTCCATTCGTTTACT 58.714 36.000 0.00 0.00 0.00 2.24
4981 5188 6.535274 ACTACAACAACTCCATTCGTTTAC 57.465 37.500 0.00 0.00 0.00 2.01
4982 5189 7.436118 ACTACTACAACAACTCCATTCGTTTA 58.564 34.615 0.00 0.00 0.00 2.01
4983 5190 6.285990 ACTACTACAACAACTCCATTCGTTT 58.714 36.000 0.00 0.00 0.00 3.60
4984 5191 5.850614 ACTACTACAACAACTCCATTCGTT 58.149 37.500 0.00 0.00 0.00 3.85
4985 5192 5.464030 ACTACTACAACAACTCCATTCGT 57.536 39.130 0.00 0.00 0.00 3.85
4986 5193 6.618811 ACTACTACTACAACAACTCCATTCG 58.381 40.000 0.00 0.00 0.00 3.34
4987 5194 7.331193 CCAACTACTACTACAACAACTCCATTC 59.669 40.741 0.00 0.00 0.00 2.67
4988 5195 7.015877 TCCAACTACTACTACAACAACTCCATT 59.984 37.037 0.00 0.00 0.00 3.16
4989 5196 6.495872 TCCAACTACTACTACAACAACTCCAT 59.504 38.462 0.00 0.00 0.00 3.41
4990 5197 5.834742 TCCAACTACTACTACAACAACTCCA 59.165 40.000 0.00 0.00 0.00 3.86
4991 5198 6.155136 GTCCAACTACTACTACAACAACTCC 58.845 44.000 0.00 0.00 0.00 3.85
4992 5199 6.742109 TGTCCAACTACTACTACAACAACTC 58.258 40.000 0.00 0.00 0.00 3.01
4993 5200 6.720112 TGTCCAACTACTACTACAACAACT 57.280 37.500 0.00 0.00 0.00 3.16
4994 5201 7.958053 ATTGTCCAACTACTACTACAACAAC 57.042 36.000 0.00 0.00 30.40 3.32
4995 5202 8.863086 ACTATTGTCCAACTACTACTACAACAA 58.137 33.333 0.00 0.00 30.40 2.83
4996 5203 8.413309 ACTATTGTCCAACTACTACTACAACA 57.587 34.615 0.00 0.00 30.40 3.33
4997 5204 9.780413 GTACTATTGTCCAACTACTACTACAAC 57.220 37.037 0.00 0.00 30.40 3.32
4998 5205 9.519191 TGTACTATTGTCCAACTACTACTACAA 57.481 33.333 0.00 0.00 0.00 2.41
4999 5206 9.170734 CTGTACTATTGTCCAACTACTACTACA 57.829 37.037 0.00 0.00 0.00 2.74
5000 5207 8.619546 CCTGTACTATTGTCCAACTACTACTAC 58.380 40.741 0.00 0.00 0.00 2.73
5001 5208 8.331740 ACCTGTACTATTGTCCAACTACTACTA 58.668 37.037 0.00 0.00 0.00 1.82
5002 5209 7.180663 ACCTGTACTATTGTCCAACTACTACT 58.819 38.462 0.00 0.00 0.00 2.57
5003 5210 7.401955 ACCTGTACTATTGTCCAACTACTAC 57.598 40.000 0.00 0.00 0.00 2.73
5004 5211 7.284034 GCTACCTGTACTATTGTCCAACTACTA 59.716 40.741 0.00 0.00 0.00 1.82
5005 5212 6.096564 GCTACCTGTACTATTGTCCAACTACT 59.903 42.308 0.00 0.00 0.00 2.57
5006 5213 6.271566 GCTACCTGTACTATTGTCCAACTAC 58.728 44.000 0.00 0.00 0.00 2.73
5007 5214 5.361857 GGCTACCTGTACTATTGTCCAACTA 59.638 44.000 0.00 0.00 0.00 2.24
5008 5215 4.161754 GGCTACCTGTACTATTGTCCAACT 59.838 45.833 0.00 0.00 0.00 3.16
5009 5216 4.439968 GGCTACCTGTACTATTGTCCAAC 58.560 47.826 0.00 0.00 0.00 3.77
5010 5217 3.453353 GGGCTACCTGTACTATTGTCCAA 59.547 47.826 0.00 0.00 0.00 3.53
5011 5218 3.036091 GGGCTACCTGTACTATTGTCCA 58.964 50.000 0.00 0.00 0.00 4.02
5012 5219 2.367894 GGGGCTACCTGTACTATTGTCC 59.632 54.545 0.00 0.00 36.80 4.02
5013 5220 2.035576 CGGGGCTACCTGTACTATTGTC 59.964 54.545 0.00 0.00 38.41 3.18
5014 5221 2.037144 CGGGGCTACCTGTACTATTGT 58.963 52.381 0.00 0.00 38.41 2.71
5015 5222 2.313317 TCGGGGCTACCTGTACTATTG 58.687 52.381 0.00 0.00 44.02 1.90
5016 5223 2.697229 GTTCGGGGCTACCTGTACTATT 59.303 50.000 0.00 0.00 44.02 1.73
5017 5224 2.314246 GTTCGGGGCTACCTGTACTAT 58.686 52.381 0.00 0.00 44.02 2.12
5018 5225 1.005805 TGTTCGGGGCTACCTGTACTA 59.994 52.381 0.00 0.00 42.24 1.82
5019 5226 0.251922 TGTTCGGGGCTACCTGTACT 60.252 55.000 0.00 0.00 42.24 2.73
5020 5227 0.175073 CTGTTCGGGGCTACCTGTAC 59.825 60.000 0.00 0.00 44.02 2.90
5021 5228 0.040058 TCTGTTCGGGGCTACCTGTA 59.960 55.000 0.00 0.00 44.02 2.74
5022 5229 1.229082 TCTGTTCGGGGCTACCTGT 60.229 57.895 0.00 0.00 44.02 4.00
5023 5230 1.517832 CTCTGTTCGGGGCTACCTG 59.482 63.158 0.00 0.00 45.08 4.00
5024 5231 1.686110 CCTCTGTTCGGGGCTACCT 60.686 63.158 0.00 0.00 36.97 3.08
5025 5232 1.988406 ACCTCTGTTCGGGGCTACC 60.988 63.158 0.00 0.00 0.00 3.18
5026 5233 1.218316 CACCTCTGTTCGGGGCTAC 59.782 63.158 0.00 0.00 0.00 3.58
5027 5234 1.987855 CCACCTCTGTTCGGGGCTA 60.988 63.158 0.00 0.00 0.00 3.93
5028 5235 3.322466 CCACCTCTGTTCGGGGCT 61.322 66.667 0.00 0.00 0.00 5.19
5030 5237 4.760047 CGCCACCTCTGTTCGGGG 62.760 72.222 0.00 0.00 0.00 5.73
5031 5238 4.760047 CCGCCACCTCTGTTCGGG 62.760 72.222 0.00 0.00 35.51 5.14
5032 5239 4.003788 ACCGCCACCTCTGTTCGG 62.004 66.667 0.00 0.00 41.37 4.30
5033 5240 2.738521 CACCGCCACCTCTGTTCG 60.739 66.667 0.00 0.00 0.00 3.95
5034 5241 2.358737 CCACCGCCACCTCTGTTC 60.359 66.667 0.00 0.00 0.00 3.18
5035 5242 4.643387 GCCACCGCCACCTCTGTT 62.643 66.667 0.00 0.00 0.00 3.16
5037 5244 4.641645 TTGCCACCGCCACCTCTG 62.642 66.667 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.