Multiple sequence alignment - TraesCS5B01G426700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G426700 chr5B 100.000 2536 0 0 1 2536 602485123 602482588 0.000000e+00 4684.0
1 TraesCS5B01G426700 chr5B 89.427 1116 73 28 660 1766 602649636 602648557 0.000000e+00 1365.0
2 TraesCS5B01G426700 chr5B 93.247 385 23 3 151 532 654492442 654492058 4.740000e-157 564.0
3 TraesCS5B01G426700 chr5D 90.072 1249 58 20 539 1746 489014215 489012992 0.000000e+00 1559.0
4 TraesCS5B01G426700 chr5D 93.427 852 33 6 1209 2046 488938451 488937609 0.000000e+00 1242.0
5 TraesCS5B01G426700 chr5D 91.028 914 54 12 873 1766 489167474 489166569 0.000000e+00 1208.0
6 TraesCS5B01G426700 chr5D 81.241 693 46 27 539 1205 488941877 488941243 1.360000e-132 483.0
7 TraesCS5B01G426700 chr5D 93.590 312 19 1 2225 2536 488934569 488934259 4.940000e-127 464.0
8 TraesCS5B01G426700 chr5D 77.720 193 13 19 679 865 489170971 489170803 9.660000e-15 91.6
9 TraesCS5B01G426700 chr5A 85.859 1386 87 46 701 2049 610079345 610078032 0.000000e+00 1373.0
10 TraesCS5B01G426700 chr5A 84.372 1107 96 39 648 1716 610185957 610184890 0.000000e+00 1014.0
11 TraesCS5B01G426700 chr5A 96.183 131 4 1 586 715 610079493 610079363 1.980000e-51 213.0
12 TraesCS5B01G426700 chr7B 93.766 385 21 3 151 532 660672275 660671891 2.190000e-160 575.0
13 TraesCS5B01G426700 chr7B 93.282 387 22 4 151 534 123317387 123317002 3.660000e-158 568.0
14 TraesCS5B01G426700 chr7B 93.264 386 20 5 151 532 694102543 694102160 4.740000e-157 564.0
15 TraesCS5B01G426700 chr6B 92.574 404 22 8 151 549 676734965 676735365 7.870000e-160 573.0
16 TraesCS5B01G426700 chr6B 93.282 387 20 6 151 533 366587452 366587836 1.320000e-157 566.0
17 TraesCS5B01G426700 chr6B 93.264 386 20 5 151 532 652762556 652762173 4.740000e-157 564.0
18 TraesCS5B01G426700 chr2B 93.523 386 21 4 151 533 756160473 756160089 2.830000e-159 571.0
19 TraesCS5B01G426700 chr1B 93.540 387 20 4 151 532 679746419 679746805 2.830000e-159 571.0
20 TraesCS5B01G426700 chr6A 82.667 300 34 7 1268 1555 31584032 31583739 1.510000e-62 250.0
21 TraesCS5B01G426700 chrUn 80.667 300 34 12 1268 1555 76961192 76961479 7.110000e-51 211.0
22 TraesCS5B01G426700 chr4B 88.073 109 7 5 1266 1369 57137068 57136961 9.530000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G426700 chr5B 602482588 602485123 2535 True 4684.000000 4684 100.000000 1 2536 1 chr5B.!!$R1 2535
1 TraesCS5B01G426700 chr5B 602648557 602649636 1079 True 1365.000000 1365 89.427000 660 1766 1 chr5B.!!$R2 1106
2 TraesCS5B01G426700 chr5D 489012992 489014215 1223 True 1559.000000 1559 90.072000 539 1746 1 chr5D.!!$R1 1207
3 TraesCS5B01G426700 chr5D 488934259 488941877 7618 True 729.666667 1242 89.419333 539 2536 3 chr5D.!!$R2 1997
4 TraesCS5B01G426700 chr5D 489166569 489170971 4402 True 649.800000 1208 84.374000 679 1766 2 chr5D.!!$R3 1087
5 TraesCS5B01G426700 chr5A 610184890 610185957 1067 True 1014.000000 1014 84.372000 648 1716 1 chr5A.!!$R1 1068
6 TraesCS5B01G426700 chr5A 610078032 610079493 1461 True 793.000000 1373 91.021000 586 2049 2 chr5A.!!$R2 1463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.108424 ACATCTGAACAGCTCTCGGC 60.108 55.0 0.0 0.0 42.19 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 7828 1.33416 TCACGTGGAACTAGAAGGCA 58.666 50.0 17.0 0.0 31.75 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.724977 TGACCAACAGAGTAGCGAAG 57.275 50.000 0.00 0.00 0.00 3.79
20 21 1.961394 TGACCAACAGAGTAGCGAAGT 59.039 47.619 0.00 0.00 0.00 3.01
21 22 2.030185 TGACCAACAGAGTAGCGAAGTC 60.030 50.000 0.00 0.00 0.00 3.01
22 23 1.068472 ACCAACAGAGTAGCGAAGTCG 60.068 52.381 0.00 0.00 43.27 4.18
23 24 1.068472 CCAACAGAGTAGCGAAGTCGT 60.068 52.381 2.25 0.00 42.22 4.34
24 25 1.979469 CAACAGAGTAGCGAAGTCGTG 59.021 52.381 2.25 0.00 42.22 4.35
25 26 1.520494 ACAGAGTAGCGAAGTCGTGA 58.480 50.000 2.25 0.00 42.22 4.35
26 27 1.878088 ACAGAGTAGCGAAGTCGTGAA 59.122 47.619 2.25 0.00 42.22 3.18
27 28 2.292569 ACAGAGTAGCGAAGTCGTGAAA 59.707 45.455 2.25 0.00 42.22 2.69
28 29 3.243301 ACAGAGTAGCGAAGTCGTGAAAA 60.243 43.478 2.25 0.00 42.22 2.29
29 30 3.362237 CAGAGTAGCGAAGTCGTGAAAAG 59.638 47.826 2.25 0.00 42.22 2.27
30 31 2.059541 AGTAGCGAAGTCGTGAAAAGC 58.940 47.619 2.25 0.00 42.22 3.51
31 32 1.790623 GTAGCGAAGTCGTGAAAAGCA 59.209 47.619 2.25 0.00 42.22 3.91
32 33 1.295792 AGCGAAGTCGTGAAAAGCAA 58.704 45.000 2.25 0.00 42.22 3.91
33 34 1.668751 AGCGAAGTCGTGAAAAGCAAA 59.331 42.857 2.25 0.00 42.22 3.68
34 35 2.096819 AGCGAAGTCGTGAAAAGCAAAA 59.903 40.909 2.25 0.00 42.22 2.44
35 36 2.849473 GCGAAGTCGTGAAAAGCAAAAA 59.151 40.909 2.25 0.00 42.22 1.94
36 37 3.485743 GCGAAGTCGTGAAAAGCAAAAAT 59.514 39.130 2.25 0.00 42.22 1.82
37 38 4.374013 GCGAAGTCGTGAAAAGCAAAAATC 60.374 41.667 2.25 0.00 42.22 2.17
38 39 4.146443 CGAAGTCGTGAAAAGCAAAAATCC 59.854 41.667 0.00 0.00 34.11 3.01
39 40 4.918810 AGTCGTGAAAAGCAAAAATCCT 57.081 36.364 0.00 0.00 0.00 3.24
40 41 5.262588 AGTCGTGAAAAGCAAAAATCCTT 57.737 34.783 0.00 0.00 0.00 3.36
41 42 5.281727 AGTCGTGAAAAGCAAAAATCCTTC 58.718 37.500 0.00 0.00 0.00 3.46
42 43 4.444388 GTCGTGAAAAGCAAAAATCCTTCC 59.556 41.667 0.00 0.00 0.00 3.46
43 44 3.740832 CGTGAAAAGCAAAAATCCTTCCC 59.259 43.478 0.00 0.00 0.00 3.97
44 45 4.501400 CGTGAAAAGCAAAAATCCTTCCCT 60.501 41.667 0.00 0.00 0.00 4.20
45 46 4.751600 GTGAAAAGCAAAAATCCTTCCCTG 59.248 41.667 0.00 0.00 0.00 4.45
46 47 4.653341 TGAAAAGCAAAAATCCTTCCCTGA 59.347 37.500 0.00 0.00 0.00 3.86
47 48 5.130145 TGAAAAGCAAAAATCCTTCCCTGAA 59.870 36.000 0.00 0.00 0.00 3.02
48 49 5.628797 AAAGCAAAAATCCTTCCCTGAAA 57.371 34.783 0.00 0.00 0.00 2.69
49 50 5.830799 AAGCAAAAATCCTTCCCTGAAAT 57.169 34.783 0.00 0.00 0.00 2.17
50 51 5.411831 AGCAAAAATCCTTCCCTGAAATC 57.588 39.130 0.00 0.00 0.00 2.17
51 52 4.082026 AGCAAAAATCCTTCCCTGAAATCG 60.082 41.667 0.00 0.00 0.00 3.34
52 53 4.321974 GCAAAAATCCTTCCCTGAAATCGT 60.322 41.667 0.00 0.00 0.00 3.73
53 54 5.105917 GCAAAAATCCTTCCCTGAAATCGTA 60.106 40.000 0.00 0.00 0.00 3.43
54 55 6.405842 GCAAAAATCCTTCCCTGAAATCGTAT 60.406 38.462 0.00 0.00 0.00 3.06
55 56 6.699575 AAAATCCTTCCCTGAAATCGTATG 57.300 37.500 0.00 0.00 0.00 2.39
56 57 5.630415 AATCCTTCCCTGAAATCGTATGA 57.370 39.130 0.00 0.00 0.00 2.15
57 58 5.630415 ATCCTTCCCTGAAATCGTATGAA 57.370 39.130 0.00 0.00 0.00 2.57
58 59 5.023533 TCCTTCCCTGAAATCGTATGAAG 57.976 43.478 0.00 0.00 0.00 3.02
59 60 4.714802 TCCTTCCCTGAAATCGTATGAAGA 59.285 41.667 0.00 0.00 31.66 2.87
60 61 5.188948 TCCTTCCCTGAAATCGTATGAAGAA 59.811 40.000 0.00 0.00 31.66 2.52
61 62 6.058183 CCTTCCCTGAAATCGTATGAAGAAT 58.942 40.000 0.00 0.00 31.66 2.40
62 63 6.543831 CCTTCCCTGAAATCGTATGAAGAATT 59.456 38.462 0.00 0.00 31.66 2.17
63 64 7.067494 CCTTCCCTGAAATCGTATGAAGAATTT 59.933 37.037 0.00 0.00 31.66 1.82
64 65 7.320443 TCCCTGAAATCGTATGAAGAATTTG 57.680 36.000 0.00 0.00 0.00 2.32
65 66 7.109501 TCCCTGAAATCGTATGAAGAATTTGA 58.890 34.615 0.00 0.00 0.00 2.69
66 67 7.065803 TCCCTGAAATCGTATGAAGAATTTGAC 59.934 37.037 0.00 0.00 0.00 3.18
67 68 7.148255 CCCTGAAATCGTATGAAGAATTTGACA 60.148 37.037 0.00 0.00 0.00 3.58
68 69 7.693951 CCTGAAATCGTATGAAGAATTTGACAC 59.306 37.037 0.00 0.00 0.00 3.67
69 70 7.526608 TGAAATCGTATGAAGAATTTGACACC 58.473 34.615 0.00 0.00 0.00 4.16
70 71 6.436843 AATCGTATGAAGAATTTGACACCC 57.563 37.500 0.00 0.00 0.00 4.61
71 72 5.160607 TCGTATGAAGAATTTGACACCCT 57.839 39.130 0.00 0.00 0.00 4.34
72 73 4.935205 TCGTATGAAGAATTTGACACCCTG 59.065 41.667 0.00 0.00 0.00 4.45
73 74 4.935205 CGTATGAAGAATTTGACACCCTGA 59.065 41.667 0.00 0.00 0.00 3.86
74 75 5.163854 CGTATGAAGAATTTGACACCCTGAC 60.164 44.000 0.00 0.00 0.00 3.51
75 76 4.437682 TGAAGAATTTGACACCCTGACT 57.562 40.909 0.00 0.00 0.00 3.41
76 77 4.136796 TGAAGAATTTGACACCCTGACTG 58.863 43.478 0.00 0.00 0.00 3.51
77 78 3.146104 AGAATTTGACACCCTGACTGG 57.854 47.619 0.00 0.00 0.00 4.00
78 79 2.711009 AGAATTTGACACCCTGACTGGA 59.289 45.455 0.00 0.00 38.35 3.86
79 80 3.138283 AGAATTTGACACCCTGACTGGAA 59.862 43.478 0.00 0.00 38.35 3.53
80 81 3.593442 ATTTGACACCCTGACTGGAAA 57.407 42.857 0.00 0.00 38.35 3.13
81 82 3.374042 TTTGACACCCTGACTGGAAAA 57.626 42.857 0.00 0.00 38.35 2.29
82 83 2.341846 TGACACCCTGACTGGAAAAC 57.658 50.000 0.00 0.00 38.35 2.43
83 84 1.843851 TGACACCCTGACTGGAAAACT 59.156 47.619 0.00 0.00 38.35 2.66
84 85 2.158813 TGACACCCTGACTGGAAAACTC 60.159 50.000 0.00 0.00 38.35 3.01
85 86 1.843851 ACACCCTGACTGGAAAACTCA 59.156 47.619 0.00 0.00 38.35 3.41
86 87 2.241176 ACACCCTGACTGGAAAACTCAA 59.759 45.455 0.00 0.00 38.35 3.02
87 88 3.287222 CACCCTGACTGGAAAACTCAAA 58.713 45.455 0.00 0.00 38.35 2.69
88 89 3.699038 CACCCTGACTGGAAAACTCAAAA 59.301 43.478 0.00 0.00 38.35 2.44
89 90 3.699538 ACCCTGACTGGAAAACTCAAAAC 59.300 43.478 0.00 0.00 38.35 2.43
90 91 3.699038 CCCTGACTGGAAAACTCAAAACA 59.301 43.478 0.00 0.00 38.35 2.83
91 92 4.159506 CCCTGACTGGAAAACTCAAAACAA 59.840 41.667 0.00 0.00 38.35 2.83
92 93 5.337169 CCCTGACTGGAAAACTCAAAACAAA 60.337 40.000 0.00 0.00 38.35 2.83
93 94 6.162777 CCTGACTGGAAAACTCAAAACAAAA 58.837 36.000 0.00 0.00 38.35 2.44
94 95 6.648725 CCTGACTGGAAAACTCAAAACAAAAA 59.351 34.615 0.00 0.00 38.35 1.94
156 157 5.896922 CGAAATCGTATGAAGAATCTGCT 57.103 39.130 0.00 0.00 34.11 4.24
157 158 5.899318 CGAAATCGTATGAAGAATCTGCTC 58.101 41.667 0.00 0.00 34.11 4.26
158 159 5.107683 CGAAATCGTATGAAGAATCTGCTCC 60.108 44.000 0.00 0.00 34.11 4.70
159 160 3.735237 TCGTATGAAGAATCTGCTCCC 57.265 47.619 0.00 0.00 0.00 4.30
160 161 3.300388 TCGTATGAAGAATCTGCTCCCT 58.700 45.455 0.00 0.00 0.00 4.20
161 162 3.319405 TCGTATGAAGAATCTGCTCCCTC 59.681 47.826 0.00 0.00 0.00 4.30
162 163 3.320541 CGTATGAAGAATCTGCTCCCTCT 59.679 47.826 0.00 0.00 0.00 3.69
163 164 4.558496 CGTATGAAGAATCTGCTCCCTCTC 60.558 50.000 0.00 0.00 0.00 3.20
164 165 2.825223 TGAAGAATCTGCTCCCTCTCA 58.175 47.619 0.00 0.00 0.00 3.27
165 166 2.765135 TGAAGAATCTGCTCCCTCTCAG 59.235 50.000 0.00 0.00 0.00 3.35
166 167 1.122227 AGAATCTGCTCCCTCTCAGC 58.878 55.000 0.00 0.00 37.40 4.26
167 168 0.829333 GAATCTGCTCCCTCTCAGCA 59.171 55.000 0.00 0.00 44.80 4.41
168 169 1.209019 GAATCTGCTCCCTCTCAGCAA 59.791 52.381 0.00 0.00 46.22 3.91
169 170 1.283347 ATCTGCTCCCTCTCAGCAAA 58.717 50.000 0.00 0.00 46.22 3.68
170 171 1.059098 TCTGCTCCCTCTCAGCAAAA 58.941 50.000 0.00 0.00 46.22 2.44
171 172 1.421268 TCTGCTCCCTCTCAGCAAAAA 59.579 47.619 0.00 0.00 46.22 1.94
225 226 9.981114 AAATTCTAATTTTTCTTGTGGTGGTAG 57.019 29.630 0.00 0.00 35.16 3.18
226 227 8.934023 ATTCTAATTTTTCTTGTGGTGGTAGA 57.066 30.769 0.00 0.00 0.00 2.59
227 228 8.934023 TTCTAATTTTTCTTGTGGTGGTAGAT 57.066 30.769 0.00 0.00 0.00 1.98
233 234 9.927668 ATTTTTCTTGTGGTGGTAGATAATTTG 57.072 29.630 0.00 0.00 0.00 2.32
234 235 8.698973 TTTTCTTGTGGTGGTAGATAATTTGA 57.301 30.769 0.00 0.00 0.00 2.69
235 236 7.681939 TTCTTGTGGTGGTAGATAATTTGAC 57.318 36.000 0.00 0.00 0.00 3.18
236 237 5.872617 TCTTGTGGTGGTAGATAATTTGACG 59.127 40.000 0.00 0.00 0.00 4.35
237 238 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
238 239 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
239 240 3.192466 GGTGGTAGATAATTTGACGCGT 58.808 45.455 13.85 13.85 0.00 6.01
240 241 3.000925 GGTGGTAGATAATTTGACGCGTG 59.999 47.826 20.70 0.00 0.00 5.34
241 242 3.861113 GTGGTAGATAATTTGACGCGTGA 59.139 43.478 20.70 4.74 0.00 4.35
242 243 4.026804 GTGGTAGATAATTTGACGCGTGAG 60.027 45.833 20.70 0.00 0.00 3.51
243 244 3.489785 GGTAGATAATTTGACGCGTGAGG 59.510 47.826 20.70 0.00 0.00 3.86
244 245 3.247006 AGATAATTTGACGCGTGAGGT 57.753 42.857 20.70 0.00 0.00 3.85
245 246 2.930040 AGATAATTTGACGCGTGAGGTG 59.070 45.455 20.70 0.00 0.00 4.00
246 247 0.793861 TAATTTGACGCGTGAGGTGC 59.206 50.000 20.70 0.06 0.00 5.01
253 254 4.752879 GCGTGAGGTGCGCCCTAA 62.753 66.667 14.07 7.57 46.51 2.69
254 255 2.047655 CGTGAGGTGCGCCCTAAA 60.048 61.111 14.07 6.56 46.51 1.85
255 256 1.669760 CGTGAGGTGCGCCCTAAAA 60.670 57.895 14.07 4.36 46.51 1.52
256 257 1.024579 CGTGAGGTGCGCCCTAAAAT 61.025 55.000 14.07 0.00 46.51 1.82
257 258 1.173913 GTGAGGTGCGCCCTAAAATT 58.826 50.000 14.07 0.00 46.51 1.82
258 259 1.132453 GTGAGGTGCGCCCTAAAATTC 59.868 52.381 14.07 2.25 46.51 2.17
259 260 1.271652 TGAGGTGCGCCCTAAAATTCA 60.272 47.619 14.07 5.28 46.51 2.57
260 261 1.816224 GAGGTGCGCCCTAAAATTCAA 59.184 47.619 14.07 0.00 46.51 2.69
261 262 1.544246 AGGTGCGCCCTAAAATTCAAC 59.456 47.619 14.07 0.00 43.87 3.18
262 263 1.544246 GGTGCGCCCTAAAATTCAACT 59.456 47.619 4.45 0.00 0.00 3.16
263 264 2.415491 GGTGCGCCCTAAAATTCAACTC 60.415 50.000 4.45 0.00 0.00 3.01
264 265 2.227865 GTGCGCCCTAAAATTCAACTCA 59.772 45.455 4.18 0.00 0.00 3.41
265 266 3.088532 TGCGCCCTAAAATTCAACTCAT 58.911 40.909 4.18 0.00 0.00 2.90
266 267 3.509575 TGCGCCCTAAAATTCAACTCATT 59.490 39.130 4.18 0.00 0.00 2.57
267 268 4.021544 TGCGCCCTAAAATTCAACTCATTT 60.022 37.500 4.18 0.00 0.00 2.32
268 269 4.327087 GCGCCCTAAAATTCAACTCATTTG 59.673 41.667 0.00 0.00 36.42 2.32
269 270 4.864247 CGCCCTAAAATTCAACTCATTTGG 59.136 41.667 0.00 0.00 35.69 3.28
270 271 5.336372 CGCCCTAAAATTCAACTCATTTGGA 60.336 40.000 0.00 0.00 35.69 3.53
271 272 5.869344 GCCCTAAAATTCAACTCATTTGGAC 59.131 40.000 0.00 0.00 35.69 4.02
272 273 6.518200 GCCCTAAAATTCAACTCATTTGGACA 60.518 38.462 0.00 0.00 35.69 4.02
273 274 7.614494 CCCTAAAATTCAACTCATTTGGACAT 58.386 34.615 0.00 0.00 35.69 3.06
274 275 7.761249 CCCTAAAATTCAACTCATTTGGACATC 59.239 37.037 0.00 0.00 35.69 3.06
275 276 8.526147 CCTAAAATTCAACTCATTTGGACATCT 58.474 33.333 0.00 0.00 35.69 2.90
276 277 9.350357 CTAAAATTCAACTCATTTGGACATCTG 57.650 33.333 0.00 0.00 35.69 2.90
277 278 7.528996 AAATTCAACTCATTTGGACATCTGA 57.471 32.000 0.00 0.00 35.69 3.27
278 279 7.528996 AATTCAACTCATTTGGACATCTGAA 57.471 32.000 0.00 0.00 35.69 3.02
279 280 5.947228 TCAACTCATTTGGACATCTGAAC 57.053 39.130 0.00 0.00 35.69 3.18
280 281 5.375773 TCAACTCATTTGGACATCTGAACA 58.624 37.500 0.00 0.00 35.69 3.18
281 282 5.471116 TCAACTCATTTGGACATCTGAACAG 59.529 40.000 0.00 0.00 35.69 3.16
282 283 3.755378 ACTCATTTGGACATCTGAACAGC 59.245 43.478 0.00 0.00 0.00 4.40
283 284 4.008330 CTCATTTGGACATCTGAACAGCT 58.992 43.478 0.00 0.00 0.00 4.24
284 285 4.005650 TCATTTGGACATCTGAACAGCTC 58.994 43.478 0.00 0.00 0.00 4.09
285 286 3.777106 TTTGGACATCTGAACAGCTCT 57.223 42.857 0.00 0.00 0.00 4.09
286 287 3.325293 TTGGACATCTGAACAGCTCTC 57.675 47.619 0.00 0.00 0.00 3.20
287 288 1.203287 TGGACATCTGAACAGCTCTCG 59.797 52.381 0.00 0.00 0.00 4.04
288 289 1.470632 GGACATCTGAACAGCTCTCGG 60.471 57.143 0.00 0.00 0.00 4.63
289 290 0.108424 ACATCTGAACAGCTCTCGGC 60.108 55.000 0.00 0.00 42.19 5.54
290 291 0.108472 CATCTGAACAGCTCTCGGCA 60.108 55.000 0.00 0.00 44.79 5.69
291 292 0.610174 ATCTGAACAGCTCTCGGCAA 59.390 50.000 0.00 0.00 44.79 4.52
292 293 0.392706 TCTGAACAGCTCTCGGCAAA 59.607 50.000 0.00 0.00 44.79 3.68
293 294 1.202639 TCTGAACAGCTCTCGGCAAAA 60.203 47.619 0.00 0.00 44.79 2.44
294 295 1.603802 CTGAACAGCTCTCGGCAAAAA 59.396 47.619 0.00 0.00 44.79 1.94
315 316 7.698836 AAAAAGACAAATCGGATCAAAACAG 57.301 32.000 0.00 0.00 0.00 3.16
316 317 6.391227 AAAGACAAATCGGATCAAAACAGT 57.609 33.333 0.00 0.00 0.00 3.55
317 318 5.362556 AGACAAATCGGATCAAAACAGTG 57.637 39.130 0.00 0.00 0.00 3.66
318 319 3.900941 ACAAATCGGATCAAAACAGTGC 58.099 40.909 0.00 0.00 0.00 4.40
319 320 2.900122 AATCGGATCAAAACAGTGCG 57.100 45.000 0.00 0.00 0.00 5.34
320 321 1.808411 ATCGGATCAAAACAGTGCGT 58.192 45.000 0.00 0.00 0.00 5.24
321 322 0.865111 TCGGATCAAAACAGTGCGTG 59.135 50.000 0.00 0.00 0.00 5.34
322 323 0.865111 CGGATCAAAACAGTGCGTGA 59.135 50.000 0.00 0.00 0.00 4.35
323 324 1.262950 CGGATCAAAACAGTGCGTGAA 59.737 47.619 0.00 0.00 0.00 3.18
324 325 2.650608 GGATCAAAACAGTGCGTGAAC 58.349 47.619 0.00 0.00 0.00 3.18
325 326 2.032799 GGATCAAAACAGTGCGTGAACA 59.967 45.455 0.00 0.00 0.00 3.18
326 327 2.823196 TCAAAACAGTGCGTGAACAG 57.177 45.000 0.00 0.00 0.00 3.16
327 328 2.080693 TCAAAACAGTGCGTGAACAGT 58.919 42.857 0.00 0.00 0.00 3.55
328 329 3.263261 TCAAAACAGTGCGTGAACAGTA 58.737 40.909 0.00 0.00 0.00 2.74
329 330 3.685272 TCAAAACAGTGCGTGAACAGTAA 59.315 39.130 0.00 0.00 0.00 2.24
330 331 4.154375 TCAAAACAGTGCGTGAACAGTAAA 59.846 37.500 0.00 0.00 0.00 2.01
331 332 3.668596 AACAGTGCGTGAACAGTAAAC 57.331 42.857 0.00 0.00 0.00 2.01
332 333 2.623535 ACAGTGCGTGAACAGTAAACA 58.376 42.857 0.00 0.00 0.00 2.83
333 334 3.202906 ACAGTGCGTGAACAGTAAACAT 58.797 40.909 0.00 0.00 0.00 2.71
334 335 3.625764 ACAGTGCGTGAACAGTAAACATT 59.374 39.130 0.00 0.00 0.00 2.71
335 336 4.095782 ACAGTGCGTGAACAGTAAACATTT 59.904 37.500 0.00 0.00 0.00 2.32
336 337 5.034152 CAGTGCGTGAACAGTAAACATTTT 58.966 37.500 0.00 0.00 0.00 1.82
337 338 5.514914 CAGTGCGTGAACAGTAAACATTTTT 59.485 36.000 0.00 0.00 0.00 1.94
338 339 6.689241 CAGTGCGTGAACAGTAAACATTTTTA 59.311 34.615 0.00 0.00 0.00 1.52
339 340 6.689669 AGTGCGTGAACAGTAAACATTTTTAC 59.310 34.615 6.41 6.41 45.22 2.01
340 341 6.469595 GTGCGTGAACAGTAAACATTTTTACA 59.530 34.615 15.08 0.00 46.66 2.41
341 342 6.689241 TGCGTGAACAGTAAACATTTTTACAG 59.311 34.615 15.08 10.35 46.66 2.74
342 343 6.908284 GCGTGAACAGTAAACATTTTTACAGA 59.092 34.615 15.08 0.00 46.66 3.41
343 344 7.097168 GCGTGAACAGTAAACATTTTTACAGAC 60.097 37.037 15.08 8.61 46.66 3.51
344 345 7.375017 CGTGAACAGTAAACATTTTTACAGACC 59.625 37.037 15.08 6.74 46.66 3.85
345 346 7.646526 GTGAACAGTAAACATTTTTACAGACCC 59.353 37.037 15.08 4.91 46.66 4.46
346 347 7.558444 TGAACAGTAAACATTTTTACAGACCCT 59.442 33.333 15.08 0.00 46.66 4.34
347 348 7.272037 ACAGTAAACATTTTTACAGACCCTG 57.728 36.000 15.08 7.23 46.66 4.45
348 349 7.057894 ACAGTAAACATTTTTACAGACCCTGA 58.942 34.615 15.08 0.00 46.66 3.86
349 350 7.724061 ACAGTAAACATTTTTACAGACCCTGAT 59.276 33.333 15.08 0.00 46.66 2.90
350 351 8.576442 CAGTAAACATTTTTACAGACCCTGATT 58.424 33.333 15.08 0.00 46.66 2.57
351 352 9.143155 AGTAAACATTTTTACAGACCCTGATTT 57.857 29.630 15.08 0.00 46.66 2.17
352 353 9.758651 GTAAACATTTTTACAGACCCTGATTTT 57.241 29.630 9.18 0.00 44.54 1.82
353 354 8.661352 AAACATTTTTACAGACCCTGATTTTG 57.339 30.769 0.45 0.00 35.18 2.44
354 355 7.360113 ACATTTTTACAGACCCTGATTTTGT 57.640 32.000 0.45 0.00 35.18 2.83
355 356 7.433680 ACATTTTTACAGACCCTGATTTTGTC 58.566 34.615 0.45 0.00 35.18 3.18
356 357 7.287696 ACATTTTTACAGACCCTGATTTTGTCT 59.712 33.333 0.45 0.00 39.86 3.41
357 358 7.654022 TTTTTACAGACCCTGATTTTGTCTT 57.346 32.000 0.45 0.00 37.25 3.01
358 359 7.654022 TTTTACAGACCCTGATTTTGTCTTT 57.346 32.000 0.45 0.00 37.25 2.52
359 360 7.654022 TTTACAGACCCTGATTTTGTCTTTT 57.346 32.000 0.45 0.00 37.25 2.27
360 361 7.654022 TTACAGACCCTGATTTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
374 375 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
375 376 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
376 377 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
377 378 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
378 379 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
379 380 1.611474 TTGCCGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 44.15 2.90
380 381 1.592131 GCCGAGAGCTGCTCAGATG 60.592 63.158 29.49 16.14 44.15 2.90
381 382 1.592131 CCGAGAGCTGCTCAGATGC 60.592 63.158 29.49 12.92 44.15 3.91
382 383 1.438399 CGAGAGCTGCTCAGATGCT 59.562 57.895 29.49 9.44 44.15 3.79
386 387 3.950869 AGCTGCTCAGATGCTCAAA 57.049 47.368 0.00 0.00 30.41 2.69
387 388 2.421751 AGCTGCTCAGATGCTCAAAT 57.578 45.000 0.00 0.00 30.41 2.32
388 389 3.555527 AGCTGCTCAGATGCTCAAATA 57.444 42.857 0.00 0.00 30.41 1.40
389 390 3.882444 AGCTGCTCAGATGCTCAAATAA 58.118 40.909 0.00 0.00 30.41 1.40
390 391 3.878103 AGCTGCTCAGATGCTCAAATAAG 59.122 43.478 0.00 0.00 30.41 1.73
391 392 3.548415 GCTGCTCAGATGCTCAAATAAGC 60.548 47.826 0.29 0.00 42.82 3.09
392 393 3.878103 CTGCTCAGATGCTCAAATAAGCT 59.122 43.478 0.00 0.00 42.94 3.74
393 394 3.626217 TGCTCAGATGCTCAAATAAGCTG 59.374 43.478 0.00 0.00 42.94 4.24
394 395 3.875727 GCTCAGATGCTCAAATAAGCTGA 59.124 43.478 0.00 0.00 42.94 4.26
395 396 4.515944 GCTCAGATGCTCAAATAAGCTGAT 59.484 41.667 0.00 0.00 42.94 2.90
396 397 5.008811 GCTCAGATGCTCAAATAAGCTGATT 59.991 40.000 0.00 0.00 42.94 2.57
397 398 6.459848 GCTCAGATGCTCAAATAAGCTGATTT 60.460 38.462 2.89 2.89 42.94 2.17
398 399 7.400599 TCAGATGCTCAAATAAGCTGATTTT 57.599 32.000 6.28 0.00 42.94 1.82
399 400 7.833786 TCAGATGCTCAAATAAGCTGATTTTT 58.166 30.769 6.28 0.00 42.94 1.94
400 401 7.758076 TCAGATGCTCAAATAAGCTGATTTTTG 59.242 33.333 6.28 5.61 42.94 2.44
401 402 7.010183 CAGATGCTCAAATAAGCTGATTTTTGG 59.990 37.037 6.28 1.78 42.94 3.28
402 403 5.481105 TGCTCAAATAAGCTGATTTTTGGG 58.519 37.500 6.28 6.41 42.94 4.12
403 404 4.872124 GCTCAAATAAGCTGATTTTTGGGG 59.128 41.667 6.28 0.00 39.27 4.96
404 405 4.831107 TCAAATAAGCTGATTTTTGGGGC 58.169 39.130 6.28 0.00 31.57 5.80
405 406 3.525268 AATAAGCTGATTTTTGGGGCG 57.475 42.857 0.00 0.00 0.00 6.13
406 407 0.530288 TAAGCTGATTTTTGGGGCGC 59.470 50.000 0.00 0.00 0.00 6.53
407 408 1.470996 AAGCTGATTTTTGGGGCGCA 61.471 50.000 10.83 0.00 0.00 6.09
408 409 1.737735 GCTGATTTTTGGGGCGCAC 60.738 57.895 10.83 4.83 0.00 5.34
409 410 1.079888 CTGATTTTTGGGGCGCACC 60.080 57.895 25.59 25.59 39.11 5.01
410 411 1.532794 TGATTTTTGGGGCGCACCT 60.533 52.632 32.18 9.19 40.03 4.00
411 412 1.215382 GATTTTTGGGGCGCACCTC 59.785 57.895 32.18 15.41 40.03 3.85
412 413 2.542211 GATTTTTGGGGCGCACCTCG 62.542 60.000 32.18 0.00 40.63 4.63
422 423 3.788766 GCACCTCGCGCGTCAAAT 61.789 61.111 30.98 9.34 0.00 2.32
423 424 2.860293 CACCTCGCGCGTCAAATT 59.140 55.556 30.98 6.49 0.00 1.82
424 425 1.962092 GCACCTCGCGCGTCAAATTA 61.962 55.000 30.98 7.39 0.00 1.40
425 426 0.650512 CACCTCGCGCGTCAAATTAT 59.349 50.000 30.98 4.98 0.00 1.28
426 427 0.928229 ACCTCGCGCGTCAAATTATC 59.072 50.000 30.98 0.00 0.00 1.75
427 428 1.209128 CCTCGCGCGTCAAATTATCT 58.791 50.000 30.98 0.00 0.00 1.98
428 429 2.223641 ACCTCGCGCGTCAAATTATCTA 60.224 45.455 30.98 4.24 0.00 1.98
429 430 2.153247 CCTCGCGCGTCAAATTATCTAC 59.847 50.000 30.98 0.00 0.00 2.59
430 431 2.121786 TCGCGCGTCAAATTATCTACC 58.878 47.619 30.98 0.00 0.00 3.18
431 432 1.855978 CGCGCGTCAAATTATCTACCA 59.144 47.619 24.19 0.00 0.00 3.25
432 433 2.347292 CGCGCGTCAAATTATCTACCAC 60.347 50.000 24.19 0.00 0.00 4.16
433 434 2.033151 GCGCGTCAAATTATCTACCACC 60.033 50.000 8.43 0.00 0.00 4.61
434 435 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
435 436 3.000925 CGCGTCAAATTATCTACCACCAC 59.999 47.826 0.00 0.00 0.00 4.16
436 437 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
437 438 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
438 439 5.106475 GCGTCAAATTATCTACCACCACAAA 60.106 40.000 0.00 0.00 0.00 2.83
439 440 6.568844 GCGTCAAATTATCTACCACCACAAAA 60.569 38.462 0.00 0.00 0.00 2.44
440 441 7.364200 CGTCAAATTATCTACCACCACAAAAA 58.636 34.615 0.00 0.00 0.00 1.94
508 509 8.470040 TTTTTCTAAAAATGATGCAGATGAGC 57.530 30.769 0.00 0.00 33.29 4.26
509 510 5.762825 TCTAAAAATGATGCAGATGAGCC 57.237 39.130 0.00 0.00 0.00 4.70
510 511 3.814005 AAAAATGATGCAGATGAGCCC 57.186 42.857 0.00 0.00 0.00 5.19
511 512 1.315690 AAATGATGCAGATGAGCCCG 58.684 50.000 0.00 0.00 0.00 6.13
512 513 0.536687 AATGATGCAGATGAGCCCGG 60.537 55.000 0.00 0.00 0.00 5.73
513 514 2.281345 GATGCAGATGAGCCCGGG 60.281 66.667 19.09 19.09 0.00 5.73
514 515 3.092511 ATGCAGATGAGCCCGGGT 61.093 61.111 24.63 9.10 0.00 5.28
515 516 3.411114 ATGCAGATGAGCCCGGGTG 62.411 63.158 24.63 12.63 0.00 4.61
517 518 4.100084 CAGATGAGCCCGGGTGCA 62.100 66.667 24.63 20.72 0.00 4.57
518 519 3.790437 AGATGAGCCCGGGTGCAG 61.790 66.667 24.63 0.00 0.00 4.41
519 520 3.785859 GATGAGCCCGGGTGCAGA 61.786 66.667 24.63 1.93 0.00 4.26
520 521 3.092511 ATGAGCCCGGGTGCAGAT 61.093 61.111 24.63 4.52 0.00 2.90
521 522 2.615227 GATGAGCCCGGGTGCAGATT 62.615 60.000 24.63 5.68 0.00 2.40
522 523 1.344953 ATGAGCCCGGGTGCAGATTA 61.345 55.000 24.63 0.35 0.00 1.75
523 524 1.227674 GAGCCCGGGTGCAGATTAG 60.228 63.158 24.63 0.00 0.00 1.73
524 525 2.902343 GCCCGGGTGCAGATTAGC 60.902 66.667 24.63 0.00 0.00 3.09
525 526 2.911143 CCCGGGTGCAGATTAGCT 59.089 61.111 14.18 0.00 34.99 3.32
536 537 3.523606 CAGATTAGCTGCACTCACTCT 57.476 47.619 1.02 0.00 37.90 3.24
537 538 3.188492 CAGATTAGCTGCACTCACTCTG 58.812 50.000 1.02 1.74 37.90 3.35
538 539 3.095332 AGATTAGCTGCACTCACTCTGA 58.905 45.455 1.02 0.00 0.00 3.27
539 540 2.732412 TTAGCTGCACTCACTCTGAC 57.268 50.000 1.02 0.00 0.00 3.51
540 541 1.916506 TAGCTGCACTCACTCTGACT 58.083 50.000 1.02 0.00 0.00 3.41
541 542 1.047002 AGCTGCACTCACTCTGACTT 58.953 50.000 1.02 0.00 0.00 3.01
542 543 1.146637 GCTGCACTCACTCTGACTTG 58.853 55.000 0.00 0.00 0.00 3.16
562 563 5.946377 ACTTGTGTTTTCCTCAAGAAGAACT 59.054 36.000 10.41 0.00 40.35 3.01
575 576 2.497675 AGAAGAACTAATGGAGCAGCGA 59.502 45.455 0.00 0.00 0.00 4.93
580 581 2.778299 ACTAATGGAGCAGCGAAACAA 58.222 42.857 0.00 0.00 0.00 2.83
638 642 7.788026 TGAAACTCACCGTCCTGTAATAATAT 58.212 34.615 0.00 0.00 0.00 1.28
639 643 8.916062 TGAAACTCACCGTCCTGTAATAATATA 58.084 33.333 0.00 0.00 0.00 0.86
918 4277 0.745845 CCGGCAATCCACTTCTCTGG 60.746 60.000 0.00 0.00 0.00 3.86
935 4297 0.248743 TGGACACAACGACTCACGAC 60.249 55.000 0.00 0.00 45.77 4.34
944 4308 2.224606 ACGACTCACGACCTTTCTGTA 58.775 47.619 0.00 0.00 45.77 2.74
954 4326 3.433615 CGACCTTTCTGTAAGCCAAAGAG 59.566 47.826 0.00 0.00 32.19 2.85
997 4394 2.569404 AGTCCAGTTTAGGAAGAGGCAG 59.431 50.000 0.00 0.00 39.92 4.85
1199 4597 2.628657 GCTCCACCTCGGTATGATACTT 59.371 50.000 2.24 0.00 35.57 2.24
1584 7828 1.209128 GCATAGCTACACGCGTCAAT 58.791 50.000 9.86 0.00 45.59 2.57
1591 7835 0.037697 TACACGCGTCAATGCCTTCT 60.038 50.000 9.86 0.00 0.00 2.85
1609 7853 5.238583 CCTTCTAGTTCCACGTGATCTTTT 58.761 41.667 19.30 0.00 0.00 2.27
1610 7854 5.701290 CCTTCTAGTTCCACGTGATCTTTTT 59.299 40.000 19.30 0.00 0.00 1.94
1954 8224 7.908827 TTTCGTGTTTTATAGAGCCACATTA 57.091 32.000 0.00 0.00 0.00 1.90
1955 8225 8.500753 TTTCGTGTTTTATAGAGCCACATTAT 57.499 30.769 0.00 0.00 0.00 1.28
1956 8226 8.500753 TTCGTGTTTTATAGAGCCACATTATT 57.499 30.769 0.00 0.00 0.00 1.40
1967 8237 5.954150 AGAGCCACATTATTCAATTGAGGTT 59.046 36.000 8.41 2.55 0.00 3.50
2003 8273 6.481954 AAAATTGAGCACCTAGTTTAGACG 57.518 37.500 0.00 0.00 0.00 4.18
2046 8316 8.293867 ACGCTCTCTCATTCAATACTCTTATAC 58.706 37.037 0.00 0.00 0.00 1.47
2109 8457 6.834969 ACTATAGTTTTCTACTCCCTCTGTCC 59.165 42.308 0.00 0.00 38.33 4.02
2110 8458 2.826725 AGTTTTCTACTCCCTCTGTCCG 59.173 50.000 0.00 0.00 28.23 4.79
2112 8460 2.893215 TTCTACTCCCTCTGTCCGAA 57.107 50.000 0.00 0.00 0.00 4.30
2113 8461 2.893215 TCTACTCCCTCTGTCCGAAA 57.107 50.000 0.00 0.00 0.00 3.46
2114 8462 3.165087 TCTACTCCCTCTGTCCGAAAA 57.835 47.619 0.00 0.00 0.00 2.29
2117 8465 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2118 8466 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2119 8467 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2121 8469 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2125 8473 4.312443 TCTGTCCGAAAATACTTGTCACC 58.688 43.478 0.00 0.00 0.00 4.02
2126 8474 4.062293 CTGTCCGAAAATACTTGTCACCA 58.938 43.478 0.00 0.00 0.00 4.17
2127 8475 3.810941 TGTCCGAAAATACTTGTCACCAC 59.189 43.478 0.00 0.00 0.00 4.16
2130 9804 3.566322 CCGAAAATACTTGTCACCACCAA 59.434 43.478 0.00 0.00 0.00 3.67
2132 9806 5.450688 CCGAAAATACTTGTCACCACCAAAA 60.451 40.000 0.00 0.00 0.00 2.44
2133 9807 6.212955 CGAAAATACTTGTCACCACCAAAAT 58.787 36.000 0.00 0.00 0.00 1.82
2212 10724 9.958234 TTCATTTTGATGACAAGTATTTTCGAA 57.042 25.926 0.00 0.00 37.32 3.71
2213 10725 9.393249 TCATTTTGATGACAAGTATTTTCGAAC 57.607 29.630 0.00 0.00 37.32 3.95
2215 10727 6.772770 TTGATGACAAGTATTTTCGAACGA 57.227 33.333 0.00 0.00 0.00 3.85
2217 10729 5.347635 TGATGACAAGTATTTTCGAACGAGG 59.652 40.000 0.00 0.00 0.00 4.63
2218 10730 3.991773 TGACAAGTATTTTCGAACGAGGG 59.008 43.478 0.00 0.00 0.00 4.30
2219 10731 4.240096 GACAAGTATTTTCGAACGAGGGA 58.760 43.478 0.00 0.00 0.00 4.20
2220 10732 4.243270 ACAAGTATTTTCGAACGAGGGAG 58.757 43.478 0.00 0.00 0.00 4.30
2223 10735 5.848833 AGTATTTTCGAACGAGGGAGTAT 57.151 39.130 0.00 0.00 0.00 2.12
2345 11495 9.635404 TCCTAGGTTCTCAAATTTTAAAACTGA 57.365 29.630 9.08 8.34 0.00 3.41
2401 11551 7.532682 TGGTTGACAATTTTGCTTTCTTAAC 57.467 32.000 0.00 0.00 0.00 2.01
2407 11557 5.985530 ACAATTTTGCTTTCTTAACAGGCTC 59.014 36.000 0.00 0.00 0.00 4.70
2420 11570 7.867921 TCTTAACAGGCTCCCTAATTCAATTA 58.132 34.615 0.00 0.00 29.64 1.40
2421 11571 7.993183 TCTTAACAGGCTCCCTAATTCAATTAG 59.007 37.037 9.90 9.90 41.45 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.961394 ACTTCGCTACTCTGTTGGTCA 59.039 47.619 0.00 0.00 0.00 4.02
1 2 2.597520 GACTTCGCTACTCTGTTGGTC 58.402 52.381 0.00 0.00 0.00 4.02
2 3 1.068472 CGACTTCGCTACTCTGTTGGT 60.068 52.381 0.00 0.00 0.00 3.67
3 4 1.068472 ACGACTTCGCTACTCTGTTGG 60.068 52.381 0.00 0.00 44.43 3.77
4 5 1.979469 CACGACTTCGCTACTCTGTTG 59.021 52.381 0.00 0.00 44.43 3.33
6 7 1.520494 TCACGACTTCGCTACTCTGT 58.480 50.000 0.00 0.00 44.43 3.41
7 8 2.613730 TTCACGACTTCGCTACTCTG 57.386 50.000 0.00 0.00 44.43 3.35
8 9 3.566523 CTTTTCACGACTTCGCTACTCT 58.433 45.455 0.00 0.00 44.43 3.24
9 10 2.090812 GCTTTTCACGACTTCGCTACTC 59.909 50.000 0.00 0.00 44.43 2.59
10 11 2.059541 GCTTTTCACGACTTCGCTACT 58.940 47.619 0.00 0.00 44.43 2.57
11 12 1.790623 TGCTTTTCACGACTTCGCTAC 59.209 47.619 0.00 0.00 44.43 3.58
12 13 2.143008 TGCTTTTCACGACTTCGCTA 57.857 45.000 0.00 0.00 44.43 4.26
13 14 1.295792 TTGCTTTTCACGACTTCGCT 58.704 45.000 0.00 0.00 44.43 4.93
14 15 2.099633 TTTGCTTTTCACGACTTCGC 57.900 45.000 0.00 0.00 44.43 4.70
15 16 4.146443 GGATTTTTGCTTTTCACGACTTCG 59.854 41.667 0.00 0.00 46.33 3.79
16 17 5.281727 AGGATTTTTGCTTTTCACGACTTC 58.718 37.500 0.00 0.00 0.00 3.01
17 18 5.262588 AGGATTTTTGCTTTTCACGACTT 57.737 34.783 0.00 0.00 0.00 3.01
18 19 4.918810 AGGATTTTTGCTTTTCACGACT 57.081 36.364 0.00 0.00 0.00 4.18
19 20 4.444388 GGAAGGATTTTTGCTTTTCACGAC 59.556 41.667 0.00 0.00 0.00 4.34
20 21 4.500716 GGGAAGGATTTTTGCTTTTCACGA 60.501 41.667 0.00 0.00 0.00 4.35
21 22 3.740832 GGGAAGGATTTTTGCTTTTCACG 59.259 43.478 0.00 0.00 0.00 4.35
22 23 4.751600 CAGGGAAGGATTTTTGCTTTTCAC 59.248 41.667 0.00 0.00 0.00 3.18
23 24 4.653341 TCAGGGAAGGATTTTTGCTTTTCA 59.347 37.500 0.00 0.00 0.00 2.69
24 25 5.213891 TCAGGGAAGGATTTTTGCTTTTC 57.786 39.130 0.00 0.00 0.00 2.29
25 26 5.628797 TTCAGGGAAGGATTTTTGCTTTT 57.371 34.783 0.00 0.00 0.00 2.27
26 27 5.628797 TTTCAGGGAAGGATTTTTGCTTT 57.371 34.783 0.00 0.00 0.00 3.51
27 28 5.567423 CGATTTCAGGGAAGGATTTTTGCTT 60.567 40.000 0.00 0.00 0.00 3.91
28 29 4.082026 CGATTTCAGGGAAGGATTTTTGCT 60.082 41.667 0.00 0.00 0.00 3.91
29 30 4.176271 CGATTTCAGGGAAGGATTTTTGC 58.824 43.478 0.00 0.00 0.00 3.68
30 31 5.391312 ACGATTTCAGGGAAGGATTTTTG 57.609 39.130 0.00 0.00 0.00 2.44
31 32 6.889722 TCATACGATTTCAGGGAAGGATTTTT 59.110 34.615 0.00 0.00 0.00 1.94
32 33 6.423182 TCATACGATTTCAGGGAAGGATTTT 58.577 36.000 0.00 0.00 0.00 1.82
33 34 6.001449 TCATACGATTTCAGGGAAGGATTT 57.999 37.500 0.00 0.00 0.00 2.17
34 35 5.630415 TCATACGATTTCAGGGAAGGATT 57.370 39.130 0.00 0.00 0.00 3.01
35 36 5.366768 TCTTCATACGATTTCAGGGAAGGAT 59.633 40.000 0.00 0.00 33.07 3.24
36 37 4.714802 TCTTCATACGATTTCAGGGAAGGA 59.285 41.667 0.00 0.00 33.07 3.36
37 38 5.023533 TCTTCATACGATTTCAGGGAAGG 57.976 43.478 0.00 0.00 33.07 3.46
38 39 7.559590 AATTCTTCATACGATTTCAGGGAAG 57.440 36.000 0.00 0.00 33.41 3.46
39 40 7.609918 TCAAATTCTTCATACGATTTCAGGGAA 59.390 33.333 0.00 0.00 0.00 3.97
40 41 7.065803 GTCAAATTCTTCATACGATTTCAGGGA 59.934 37.037 0.00 0.00 0.00 4.20
41 42 7.148255 TGTCAAATTCTTCATACGATTTCAGGG 60.148 37.037 0.00 0.00 0.00 4.45
42 43 7.693951 GTGTCAAATTCTTCATACGATTTCAGG 59.306 37.037 0.00 0.00 0.00 3.86
43 44 7.693951 GGTGTCAAATTCTTCATACGATTTCAG 59.306 37.037 0.00 0.00 0.00 3.02
44 45 7.361713 GGGTGTCAAATTCTTCATACGATTTCA 60.362 37.037 0.00 0.00 0.00 2.69
45 46 6.967199 GGGTGTCAAATTCTTCATACGATTTC 59.033 38.462 0.00 0.00 0.00 2.17
46 47 6.659242 AGGGTGTCAAATTCTTCATACGATTT 59.341 34.615 0.00 0.00 0.00 2.17
47 48 6.094048 CAGGGTGTCAAATTCTTCATACGATT 59.906 38.462 0.00 0.00 0.00 3.34
48 49 5.586243 CAGGGTGTCAAATTCTTCATACGAT 59.414 40.000 0.00 0.00 0.00 3.73
49 50 4.935205 CAGGGTGTCAAATTCTTCATACGA 59.065 41.667 0.00 0.00 0.00 3.43
50 51 4.935205 TCAGGGTGTCAAATTCTTCATACG 59.065 41.667 0.00 0.00 0.00 3.06
51 52 5.940470 AGTCAGGGTGTCAAATTCTTCATAC 59.060 40.000 0.00 0.00 0.00 2.39
52 53 5.939883 CAGTCAGGGTGTCAAATTCTTCATA 59.060 40.000 0.00 0.00 0.00 2.15
53 54 4.763793 CAGTCAGGGTGTCAAATTCTTCAT 59.236 41.667 0.00 0.00 0.00 2.57
54 55 4.136796 CAGTCAGGGTGTCAAATTCTTCA 58.863 43.478 0.00 0.00 0.00 3.02
55 56 3.503748 CCAGTCAGGGTGTCAAATTCTTC 59.496 47.826 0.00 0.00 0.00 2.87
56 57 3.138283 TCCAGTCAGGGTGTCAAATTCTT 59.862 43.478 0.00 0.00 38.24 2.52
57 58 2.711009 TCCAGTCAGGGTGTCAAATTCT 59.289 45.455 0.00 0.00 38.24 2.40
58 59 3.140325 TCCAGTCAGGGTGTCAAATTC 57.860 47.619 0.00 0.00 38.24 2.17
59 60 3.593442 TTCCAGTCAGGGTGTCAAATT 57.407 42.857 0.00 0.00 38.24 1.82
60 61 3.593442 TTTCCAGTCAGGGTGTCAAAT 57.407 42.857 0.00 0.00 38.24 2.32
61 62 3.020984 GTTTTCCAGTCAGGGTGTCAAA 58.979 45.455 0.00 0.00 38.24 2.69
62 63 2.241176 AGTTTTCCAGTCAGGGTGTCAA 59.759 45.455 0.00 0.00 38.24 3.18
63 64 1.843851 AGTTTTCCAGTCAGGGTGTCA 59.156 47.619 0.00 0.00 38.24 3.58
64 65 2.158813 TGAGTTTTCCAGTCAGGGTGTC 60.159 50.000 0.00 0.00 38.24 3.67
65 66 1.843851 TGAGTTTTCCAGTCAGGGTGT 59.156 47.619 0.00 0.00 38.24 4.16
66 67 2.638480 TGAGTTTTCCAGTCAGGGTG 57.362 50.000 0.00 0.00 38.24 4.61
67 68 3.662759 TTTGAGTTTTCCAGTCAGGGT 57.337 42.857 0.00 0.00 36.14 4.34
68 69 3.699038 TGTTTTGAGTTTTCCAGTCAGGG 59.301 43.478 0.00 0.00 36.14 4.45
69 70 4.981806 TGTTTTGAGTTTTCCAGTCAGG 57.018 40.909 0.00 0.00 36.14 3.86
70 71 7.650834 TTTTTGTTTTGAGTTTTCCAGTCAG 57.349 32.000 0.00 0.00 36.14 3.51
134 135 5.107683 GGAGCAGATTCTTCATACGATTTCG 60.108 44.000 0.00 0.00 46.33 3.46
135 136 5.178438 GGGAGCAGATTCTTCATACGATTTC 59.822 44.000 0.00 0.00 0.00 2.17
136 137 5.059833 GGGAGCAGATTCTTCATACGATTT 58.940 41.667 0.00 0.00 0.00 2.17
137 138 4.346418 AGGGAGCAGATTCTTCATACGATT 59.654 41.667 0.00 0.00 0.00 3.34
138 139 3.900601 AGGGAGCAGATTCTTCATACGAT 59.099 43.478 0.00 0.00 0.00 3.73
139 140 3.300388 AGGGAGCAGATTCTTCATACGA 58.700 45.455 0.00 0.00 0.00 3.43
140 141 3.320541 AGAGGGAGCAGATTCTTCATACG 59.679 47.826 0.00 0.00 0.00 3.06
141 142 4.343526 TGAGAGGGAGCAGATTCTTCATAC 59.656 45.833 0.00 0.00 0.00 2.39
142 143 4.550669 TGAGAGGGAGCAGATTCTTCATA 58.449 43.478 0.00 0.00 0.00 2.15
143 144 3.382278 TGAGAGGGAGCAGATTCTTCAT 58.618 45.455 0.00 0.00 0.00 2.57
144 145 2.765135 CTGAGAGGGAGCAGATTCTTCA 59.235 50.000 0.00 0.00 34.06 3.02
145 146 2.483538 GCTGAGAGGGAGCAGATTCTTC 60.484 54.545 0.00 0.00 36.40 2.87
146 147 1.485895 GCTGAGAGGGAGCAGATTCTT 59.514 52.381 0.00 0.00 36.40 2.52
147 148 1.122227 GCTGAGAGGGAGCAGATTCT 58.878 55.000 0.00 0.00 36.40 2.40
148 149 0.829333 TGCTGAGAGGGAGCAGATTC 59.171 55.000 0.00 0.00 41.56 2.52
149 150 1.283347 TTGCTGAGAGGGAGCAGATT 58.717 50.000 0.00 0.00 46.81 2.40
150 151 1.283347 TTTGCTGAGAGGGAGCAGAT 58.717 50.000 0.00 0.00 46.81 2.90
151 152 1.059098 TTTTGCTGAGAGGGAGCAGA 58.941 50.000 0.00 0.00 46.81 4.26
152 153 1.901591 TTTTTGCTGAGAGGGAGCAG 58.098 50.000 0.00 0.00 46.81 4.24
199 200 9.981114 CTACCACCACAAGAAAAATTAGAATTT 57.019 29.630 0.00 0.00 40.15 1.82
200 201 9.362151 TCTACCACCACAAGAAAAATTAGAATT 57.638 29.630 0.00 0.00 0.00 2.17
201 202 8.934023 TCTACCACCACAAGAAAAATTAGAAT 57.066 30.769 0.00 0.00 0.00 2.40
202 203 8.934023 ATCTACCACCACAAGAAAAATTAGAA 57.066 30.769 0.00 0.00 0.00 2.10
207 208 9.927668 CAAATTATCTACCACCACAAGAAAAAT 57.072 29.630 0.00 0.00 0.00 1.82
208 209 9.137459 TCAAATTATCTACCACCACAAGAAAAA 57.863 29.630 0.00 0.00 0.00 1.94
209 210 8.573035 GTCAAATTATCTACCACCACAAGAAAA 58.427 33.333 0.00 0.00 0.00 2.29
210 211 7.094975 CGTCAAATTATCTACCACCACAAGAAA 60.095 37.037 0.00 0.00 0.00 2.52
211 212 6.370442 CGTCAAATTATCTACCACCACAAGAA 59.630 38.462 0.00 0.00 0.00 2.52
212 213 5.872617 CGTCAAATTATCTACCACCACAAGA 59.127 40.000 0.00 0.00 0.00 3.02
213 214 5.447279 GCGTCAAATTATCTACCACCACAAG 60.447 44.000 0.00 0.00 0.00 3.16
214 215 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
215 216 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
216 217 3.000925 CGCGTCAAATTATCTACCACCAC 59.999 47.826 0.00 0.00 0.00 4.16
217 218 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
218 219 3.000925 CACGCGTCAAATTATCTACCACC 59.999 47.826 9.86 0.00 0.00 4.61
219 220 3.861113 TCACGCGTCAAATTATCTACCAC 59.139 43.478 9.86 0.00 0.00 4.16
220 221 4.109766 CTCACGCGTCAAATTATCTACCA 58.890 43.478 9.86 0.00 0.00 3.25
221 222 3.489785 CCTCACGCGTCAAATTATCTACC 59.510 47.826 9.86 0.00 0.00 3.18
222 223 4.026804 CACCTCACGCGTCAAATTATCTAC 60.027 45.833 9.86 0.00 0.00 2.59
223 224 4.109766 CACCTCACGCGTCAAATTATCTA 58.890 43.478 9.86 0.00 0.00 1.98
224 225 2.930040 CACCTCACGCGTCAAATTATCT 59.070 45.455 9.86 0.00 0.00 1.98
225 226 2.536928 GCACCTCACGCGTCAAATTATC 60.537 50.000 9.86 0.00 0.00 1.75
226 227 1.396996 GCACCTCACGCGTCAAATTAT 59.603 47.619 9.86 0.00 0.00 1.28
227 228 0.793861 GCACCTCACGCGTCAAATTA 59.206 50.000 9.86 0.00 0.00 1.40
228 229 1.574428 GCACCTCACGCGTCAAATT 59.426 52.632 9.86 0.00 0.00 1.82
229 230 3.253955 GCACCTCACGCGTCAAAT 58.746 55.556 9.86 0.00 0.00 2.32
242 243 1.544246 AGTTGAATTTTAGGGCGCACC 59.456 47.619 5.73 6.39 40.67 5.01
243 244 2.227865 TGAGTTGAATTTTAGGGCGCAC 59.772 45.455 10.83 5.15 0.00 5.34
244 245 2.509569 TGAGTTGAATTTTAGGGCGCA 58.490 42.857 10.83 0.00 0.00 6.09
245 246 3.782889 ATGAGTTGAATTTTAGGGCGC 57.217 42.857 0.00 0.00 0.00 6.53
246 247 4.864247 CCAAATGAGTTGAATTTTAGGGCG 59.136 41.667 0.00 0.00 39.87 6.13
247 248 5.869344 GTCCAAATGAGTTGAATTTTAGGGC 59.131 40.000 0.00 0.00 39.87 5.19
248 249 6.991938 TGTCCAAATGAGTTGAATTTTAGGG 58.008 36.000 0.00 0.00 39.87 3.53
249 250 8.526147 AGATGTCCAAATGAGTTGAATTTTAGG 58.474 33.333 0.00 0.00 39.87 2.69
250 251 9.350357 CAGATGTCCAAATGAGTTGAATTTTAG 57.650 33.333 0.00 0.00 39.87 1.85
251 252 9.076781 TCAGATGTCCAAATGAGTTGAATTTTA 57.923 29.630 0.00 0.00 39.87 1.52
252 253 7.954835 TCAGATGTCCAAATGAGTTGAATTTT 58.045 30.769 0.00 0.00 39.87 1.82
253 254 7.528996 TCAGATGTCCAAATGAGTTGAATTT 57.471 32.000 0.00 0.00 39.87 1.82
254 255 7.014518 TGTTCAGATGTCCAAATGAGTTGAATT 59.985 33.333 0.00 0.00 39.87 2.17
255 256 6.491062 TGTTCAGATGTCCAAATGAGTTGAAT 59.509 34.615 0.00 0.00 39.87 2.57
256 257 5.827267 TGTTCAGATGTCCAAATGAGTTGAA 59.173 36.000 0.00 0.00 39.87 2.69
257 258 5.375773 TGTTCAGATGTCCAAATGAGTTGA 58.624 37.500 0.00 0.00 39.87 3.18
258 259 5.694231 TGTTCAGATGTCCAAATGAGTTG 57.306 39.130 0.00 0.00 36.94 3.16
259 260 4.217118 GCTGTTCAGATGTCCAAATGAGTT 59.783 41.667 3.84 0.00 0.00 3.01
260 261 3.755378 GCTGTTCAGATGTCCAAATGAGT 59.245 43.478 3.84 0.00 0.00 3.41
261 262 4.008330 AGCTGTTCAGATGTCCAAATGAG 58.992 43.478 3.84 0.00 0.00 2.90
262 263 4.005650 GAGCTGTTCAGATGTCCAAATGA 58.994 43.478 0.00 0.00 0.00 2.57
263 264 4.008330 AGAGCTGTTCAGATGTCCAAATG 58.992 43.478 0.00 0.00 0.00 2.32
264 265 4.260170 GAGAGCTGTTCAGATGTCCAAAT 58.740 43.478 0.00 0.00 0.00 2.32
265 266 3.668447 GAGAGCTGTTCAGATGTCCAAA 58.332 45.455 0.00 0.00 0.00 3.28
266 267 2.353109 CGAGAGCTGTTCAGATGTCCAA 60.353 50.000 9.06 0.00 0.00 3.53
267 268 1.203287 CGAGAGCTGTTCAGATGTCCA 59.797 52.381 9.06 0.00 0.00 4.02
268 269 1.470632 CCGAGAGCTGTTCAGATGTCC 60.471 57.143 9.06 0.00 0.00 4.02
269 270 1.919918 CCGAGAGCTGTTCAGATGTC 58.080 55.000 0.00 4.69 0.00 3.06
270 271 0.108424 GCCGAGAGCTGTTCAGATGT 60.108 55.000 0.00 0.00 38.99 3.06
271 272 0.108472 TGCCGAGAGCTGTTCAGATG 60.108 55.000 0.00 0.00 44.23 2.90
272 273 0.610174 TTGCCGAGAGCTGTTCAGAT 59.390 50.000 0.00 0.00 44.23 2.90
273 274 0.392706 TTTGCCGAGAGCTGTTCAGA 59.607 50.000 0.00 0.00 44.23 3.27
274 275 1.229428 TTTTGCCGAGAGCTGTTCAG 58.771 50.000 0.00 0.00 44.23 3.02
275 276 1.674359 TTTTTGCCGAGAGCTGTTCA 58.326 45.000 0.00 0.00 44.23 3.18
291 292 7.222611 CACTGTTTTGATCCGATTTGTCTTTTT 59.777 33.333 0.00 0.00 0.00 1.94
292 293 6.697019 CACTGTTTTGATCCGATTTGTCTTTT 59.303 34.615 0.00 0.00 0.00 2.27
293 294 6.208644 CACTGTTTTGATCCGATTTGTCTTT 58.791 36.000 0.00 0.00 0.00 2.52
294 295 5.762045 CACTGTTTTGATCCGATTTGTCTT 58.238 37.500 0.00 0.00 0.00 3.01
295 296 4.320494 GCACTGTTTTGATCCGATTTGTCT 60.320 41.667 0.00 0.00 0.00 3.41
296 297 3.914364 GCACTGTTTTGATCCGATTTGTC 59.086 43.478 0.00 0.00 0.00 3.18
297 298 3.609175 CGCACTGTTTTGATCCGATTTGT 60.609 43.478 0.00 0.00 0.00 2.83
298 299 2.910482 CGCACTGTTTTGATCCGATTTG 59.090 45.455 0.00 0.00 0.00 2.32
299 300 2.552315 ACGCACTGTTTTGATCCGATTT 59.448 40.909 0.00 0.00 0.00 2.17
300 301 2.095768 CACGCACTGTTTTGATCCGATT 60.096 45.455 0.00 0.00 0.00 3.34
301 302 1.464608 CACGCACTGTTTTGATCCGAT 59.535 47.619 0.00 0.00 0.00 4.18
302 303 0.865111 CACGCACTGTTTTGATCCGA 59.135 50.000 0.00 0.00 0.00 4.55
303 304 0.865111 TCACGCACTGTTTTGATCCG 59.135 50.000 0.00 0.00 0.00 4.18
304 305 2.032799 TGTTCACGCACTGTTTTGATCC 59.967 45.455 0.00 0.00 0.00 3.36
305 306 3.242739 ACTGTTCACGCACTGTTTTGATC 60.243 43.478 0.00 0.00 0.00 2.92
306 307 2.682856 ACTGTTCACGCACTGTTTTGAT 59.317 40.909 0.00 0.00 0.00 2.57
307 308 2.080693 ACTGTTCACGCACTGTTTTGA 58.919 42.857 0.00 0.00 0.00 2.69
308 309 2.542766 ACTGTTCACGCACTGTTTTG 57.457 45.000 0.00 0.00 0.00 2.44
309 310 4.083217 TGTTTACTGTTCACGCACTGTTTT 60.083 37.500 0.00 0.00 31.81 2.43
310 311 3.437395 TGTTTACTGTTCACGCACTGTTT 59.563 39.130 0.00 0.00 31.81 2.83
311 312 3.004171 TGTTTACTGTTCACGCACTGTT 58.996 40.909 0.00 0.00 31.81 3.16
312 313 2.623535 TGTTTACTGTTCACGCACTGT 58.376 42.857 0.00 0.00 33.75 3.55
313 314 3.878086 ATGTTTACTGTTCACGCACTG 57.122 42.857 0.00 0.00 0.00 3.66
314 315 4.893424 AAATGTTTACTGTTCACGCACT 57.107 36.364 0.00 0.00 0.00 4.40
315 316 5.942325 AAAAATGTTTACTGTTCACGCAC 57.058 34.783 0.00 0.00 0.00 5.34
316 317 6.552629 TGTAAAAATGTTTACTGTTCACGCA 58.447 32.000 17.45 0.00 46.29 5.24
317 318 6.908284 TCTGTAAAAATGTTTACTGTTCACGC 59.092 34.615 17.45 0.00 46.29 5.34
318 319 7.375017 GGTCTGTAAAAATGTTTACTGTTCACG 59.625 37.037 17.45 0.00 46.29 4.35
319 320 7.646526 GGGTCTGTAAAAATGTTTACTGTTCAC 59.353 37.037 17.45 11.56 46.29 3.18
320 321 7.558444 AGGGTCTGTAAAAATGTTTACTGTTCA 59.442 33.333 17.45 1.80 46.29 3.18
321 322 7.860872 CAGGGTCTGTAAAAATGTTTACTGTTC 59.139 37.037 17.45 13.68 46.29 3.18
322 323 7.558444 TCAGGGTCTGTAAAAATGTTTACTGTT 59.442 33.333 17.45 5.03 46.29 3.16
323 324 7.057894 TCAGGGTCTGTAAAAATGTTTACTGT 58.942 34.615 17.45 1.50 46.29 3.55
324 325 7.504924 TCAGGGTCTGTAAAAATGTTTACTG 57.495 36.000 17.45 16.56 46.29 2.74
325 326 8.706322 AATCAGGGTCTGTAAAAATGTTTACT 57.294 30.769 17.45 0.00 46.29 2.24
326 327 9.758651 AAAATCAGGGTCTGTAAAAATGTTTAC 57.241 29.630 11.06 11.06 46.31 2.01
327 328 9.757227 CAAAATCAGGGTCTGTAAAAATGTTTA 57.243 29.630 0.00 0.00 32.61 2.01
328 329 8.264347 ACAAAATCAGGGTCTGTAAAAATGTTT 58.736 29.630 0.00 0.00 32.61 2.83
329 330 7.791029 ACAAAATCAGGGTCTGTAAAAATGTT 58.209 30.769 0.00 0.00 32.61 2.71
330 331 7.287696 AGACAAAATCAGGGTCTGTAAAAATGT 59.712 33.333 0.00 0.00 40.21 2.71
331 332 7.661040 AGACAAAATCAGGGTCTGTAAAAATG 58.339 34.615 0.00 0.00 40.21 2.32
332 333 7.839680 AGACAAAATCAGGGTCTGTAAAAAT 57.160 32.000 0.00 0.00 40.21 1.82
333 334 7.654022 AAGACAAAATCAGGGTCTGTAAAAA 57.346 32.000 0.00 0.00 40.80 1.94
334 335 7.654022 AAAGACAAAATCAGGGTCTGTAAAA 57.346 32.000 0.00 0.00 40.80 1.52
335 336 7.654022 AAAAGACAAAATCAGGGTCTGTAAA 57.346 32.000 0.00 0.00 40.80 2.01
336 337 7.654022 AAAAAGACAAAATCAGGGTCTGTAA 57.346 32.000 0.00 0.00 40.80 2.41
357 358 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
358 359 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
359 360 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
360 361 1.611474 ATCTGAGCAGCTCTCGGCAA 61.611 55.000 23.15 0.68 45.76 4.52
361 362 2.056815 ATCTGAGCAGCTCTCGGCA 61.057 57.895 23.15 2.15 45.76 5.69
362 363 1.592131 CATCTGAGCAGCTCTCGGC 60.592 63.158 23.15 0.00 45.76 5.54
364 365 1.438399 AGCATCTGAGCAGCTCTCG 59.562 57.895 23.15 13.93 44.86 4.04
368 369 2.421751 ATTTGAGCATCTGAGCAGCT 57.578 45.000 0.00 0.00 42.17 4.24
369 370 3.548415 GCTTATTTGAGCATCTGAGCAGC 60.548 47.826 0.00 0.00 42.25 5.25
370 371 3.878103 AGCTTATTTGAGCATCTGAGCAG 59.122 43.478 0.00 0.00 45.12 4.24
371 372 3.626217 CAGCTTATTTGAGCATCTGAGCA 59.374 43.478 0.00 0.00 45.12 4.26
372 373 3.875727 TCAGCTTATTTGAGCATCTGAGC 59.124 43.478 0.00 0.00 45.12 4.26
373 374 6.621316 AATCAGCTTATTTGAGCATCTGAG 57.379 37.500 0.00 0.00 45.12 3.35
374 375 7.400599 AAAATCAGCTTATTTGAGCATCTGA 57.599 32.000 6.64 0.00 45.12 3.27
375 376 7.010183 CCAAAAATCAGCTTATTTGAGCATCTG 59.990 37.037 6.64 0.00 45.12 2.90
376 377 7.039882 CCAAAAATCAGCTTATTTGAGCATCT 58.960 34.615 6.64 0.00 45.12 2.90
377 378 6.257193 CCCAAAAATCAGCTTATTTGAGCATC 59.743 38.462 6.64 0.00 45.12 3.91
378 379 6.110707 CCCAAAAATCAGCTTATTTGAGCAT 58.889 36.000 6.64 0.00 45.12 3.79
379 380 5.481105 CCCAAAAATCAGCTTATTTGAGCA 58.519 37.500 6.64 0.00 45.12 4.26
380 381 4.872124 CCCCAAAAATCAGCTTATTTGAGC 59.128 41.667 6.64 0.00 43.02 4.26
381 382 4.872124 GCCCCAAAAATCAGCTTATTTGAG 59.128 41.667 6.64 3.16 35.34 3.02
382 383 4.620332 CGCCCCAAAAATCAGCTTATTTGA 60.620 41.667 6.64 0.00 35.34 2.69
383 384 3.618150 CGCCCCAAAAATCAGCTTATTTG 59.382 43.478 6.64 5.24 33.62 2.32
384 385 3.860641 CGCCCCAAAAATCAGCTTATTT 58.139 40.909 0.00 0.00 0.00 1.40
385 386 2.418609 GCGCCCCAAAAATCAGCTTATT 60.419 45.455 0.00 0.00 0.00 1.40
386 387 1.136891 GCGCCCCAAAAATCAGCTTAT 59.863 47.619 0.00 0.00 0.00 1.73
387 388 0.530288 GCGCCCCAAAAATCAGCTTA 59.470 50.000 0.00 0.00 0.00 3.09
388 389 1.293179 GCGCCCCAAAAATCAGCTT 59.707 52.632 0.00 0.00 0.00 3.74
389 390 1.907807 TGCGCCCCAAAAATCAGCT 60.908 52.632 4.18 0.00 0.00 4.24
390 391 1.737735 GTGCGCCCCAAAAATCAGC 60.738 57.895 4.18 0.00 0.00 4.26
391 392 1.079888 GGTGCGCCCCAAAAATCAG 60.080 57.895 3.18 0.00 0.00 2.90
392 393 1.531739 GAGGTGCGCCCCAAAAATCA 61.532 55.000 12.68 0.00 34.57 2.57
393 394 1.215382 GAGGTGCGCCCCAAAAATC 59.785 57.895 12.68 0.00 34.57 2.17
394 395 2.635443 CGAGGTGCGCCCCAAAAAT 61.635 57.895 12.68 0.00 34.57 1.82
395 396 3.291383 CGAGGTGCGCCCCAAAAA 61.291 61.111 12.68 0.00 34.57 1.94
405 406 1.962092 TAATTTGACGCGCGAGGTGC 61.962 55.000 39.36 19.19 41.47 5.01
406 407 0.650512 ATAATTTGACGCGCGAGGTG 59.349 50.000 39.36 7.37 0.00 4.00
407 408 0.928229 GATAATTTGACGCGCGAGGT 59.072 50.000 39.36 15.50 0.00 3.85
408 409 1.209128 AGATAATTTGACGCGCGAGG 58.791 50.000 39.36 8.30 0.00 4.63
409 410 2.153247 GGTAGATAATTTGACGCGCGAG 59.847 50.000 39.36 10.29 0.00 5.03
410 411 2.121786 GGTAGATAATTTGACGCGCGA 58.878 47.619 39.36 15.38 0.00 5.87
411 412 1.855978 TGGTAGATAATTTGACGCGCG 59.144 47.619 30.96 30.96 0.00 6.86
412 413 2.033151 GGTGGTAGATAATTTGACGCGC 60.033 50.000 5.73 0.00 0.00 6.86
413 414 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
414 415 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
415 416 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
483 484 7.546667 GGCTCATCTGCATCATTTTTAGAAAAA 59.453 33.333 2.82 2.82 37.20 1.94
484 485 7.037438 GGCTCATCTGCATCATTTTTAGAAAA 58.963 34.615 0.00 0.00 34.04 2.29
485 486 6.406177 GGGCTCATCTGCATCATTTTTAGAAA 60.406 38.462 0.00 0.00 34.04 2.52
486 487 5.068198 GGGCTCATCTGCATCATTTTTAGAA 59.932 40.000 0.00 0.00 34.04 2.10
487 488 4.581824 GGGCTCATCTGCATCATTTTTAGA 59.418 41.667 0.00 0.00 34.04 2.10
488 489 4.556104 CGGGCTCATCTGCATCATTTTTAG 60.556 45.833 0.00 0.00 34.04 1.85
489 490 3.316029 CGGGCTCATCTGCATCATTTTTA 59.684 43.478 0.00 0.00 34.04 1.52
490 491 2.100252 CGGGCTCATCTGCATCATTTTT 59.900 45.455 0.00 0.00 34.04 1.94
491 492 1.679680 CGGGCTCATCTGCATCATTTT 59.320 47.619 0.00 0.00 34.04 1.82
492 493 1.315690 CGGGCTCATCTGCATCATTT 58.684 50.000 0.00 0.00 34.04 2.32
493 494 0.536687 CCGGGCTCATCTGCATCATT 60.537 55.000 0.00 0.00 34.04 2.57
494 495 1.072678 CCGGGCTCATCTGCATCAT 59.927 57.895 0.00 0.00 34.04 2.45
495 496 2.507452 CCGGGCTCATCTGCATCA 59.493 61.111 0.00 0.00 34.04 3.07
496 497 2.281345 CCCGGGCTCATCTGCATC 60.281 66.667 8.08 0.00 34.04 3.91
497 498 3.092511 ACCCGGGCTCATCTGCAT 61.093 61.111 24.08 0.00 34.04 3.96
498 499 4.100084 CACCCGGGCTCATCTGCA 62.100 66.667 24.08 0.00 34.04 4.41
500 501 4.100084 TGCACCCGGGCTCATCTG 62.100 66.667 24.08 11.82 34.04 2.90
501 502 3.790437 CTGCACCCGGGCTCATCT 61.790 66.667 24.08 0.00 34.04 2.90
502 503 2.615227 AATCTGCACCCGGGCTCATC 62.615 60.000 24.08 5.69 34.04 2.92
503 504 1.344953 TAATCTGCACCCGGGCTCAT 61.345 55.000 24.08 6.40 34.04 2.90
504 505 1.971505 CTAATCTGCACCCGGGCTCA 61.972 60.000 24.08 17.97 34.04 4.26
505 506 1.227674 CTAATCTGCACCCGGGCTC 60.228 63.158 24.08 13.62 34.04 4.70
506 507 2.911143 CTAATCTGCACCCGGGCT 59.089 61.111 24.08 4.79 34.04 5.19
507 508 2.902343 GCTAATCTGCACCCGGGC 60.902 66.667 24.08 8.36 0.00 6.13
508 509 1.524621 CAGCTAATCTGCACCCGGG 60.525 63.158 22.25 22.25 35.78 5.73
509 510 4.131376 CAGCTAATCTGCACCCGG 57.869 61.111 0.00 0.00 35.78 5.73
516 517 3.119209 TCAGAGTGAGTGCAGCTAATCTG 60.119 47.826 12.58 12.58 45.62 2.90
517 518 3.095332 TCAGAGTGAGTGCAGCTAATCT 58.905 45.455 0.00 0.00 0.00 2.40
518 519 3.119173 AGTCAGAGTGAGTGCAGCTAATC 60.119 47.826 0.00 0.00 0.00 1.75
519 520 2.830923 AGTCAGAGTGAGTGCAGCTAAT 59.169 45.455 0.00 0.00 0.00 1.73
520 521 2.242926 AGTCAGAGTGAGTGCAGCTAA 58.757 47.619 0.00 0.00 0.00 3.09
521 522 1.916506 AGTCAGAGTGAGTGCAGCTA 58.083 50.000 0.00 0.00 0.00 3.32
522 523 1.047002 AAGTCAGAGTGAGTGCAGCT 58.953 50.000 0.00 0.00 28.97 4.24
523 524 1.146637 CAAGTCAGAGTGAGTGCAGC 58.853 55.000 0.00 0.00 28.97 5.25
524 525 2.133553 CACAAGTCAGAGTGAGTGCAG 58.866 52.381 0.00 0.00 37.97 4.41
525 526 1.482182 ACACAAGTCAGAGTGAGTGCA 59.518 47.619 9.85 0.00 39.03 4.57
526 527 2.231215 ACACAAGTCAGAGTGAGTGC 57.769 50.000 9.85 0.00 39.03 4.40
527 528 4.034510 GGAAAACACAAGTCAGAGTGAGTG 59.965 45.833 8.78 8.78 39.03 3.51
528 529 4.080863 AGGAAAACACAAGTCAGAGTGAGT 60.081 41.667 0.00 0.00 39.03 3.41
529 530 4.446371 AGGAAAACACAAGTCAGAGTGAG 58.554 43.478 0.00 0.00 39.03 3.51
530 531 4.081142 TGAGGAAAACACAAGTCAGAGTGA 60.081 41.667 0.00 0.00 39.03 3.41
531 532 4.191544 TGAGGAAAACACAAGTCAGAGTG 58.808 43.478 0.00 0.00 41.40 3.51
532 533 4.487714 TGAGGAAAACACAAGTCAGAGT 57.512 40.909 0.00 0.00 0.00 3.24
533 534 5.118990 TCTTGAGGAAAACACAAGTCAGAG 58.881 41.667 0.00 0.00 44.81 3.35
534 535 5.097742 TCTTGAGGAAAACACAAGTCAGA 57.902 39.130 0.00 0.00 44.81 3.27
535 536 5.586243 TCTTCTTGAGGAAAACACAAGTCAG 59.414 40.000 0.00 0.00 44.81 3.51
536 537 5.496556 TCTTCTTGAGGAAAACACAAGTCA 58.503 37.500 0.00 0.00 44.81 3.41
537 538 6.094186 AGTTCTTCTTGAGGAAAACACAAGTC 59.906 38.462 0.00 0.00 44.81 3.01
538 539 5.946377 AGTTCTTCTTGAGGAAAACACAAGT 59.054 36.000 0.00 0.00 44.81 3.16
539 540 6.442513 AGTTCTTCTTGAGGAAAACACAAG 57.557 37.500 0.00 0.00 45.56 3.16
540 541 7.931578 TTAGTTCTTCTTGAGGAAAACACAA 57.068 32.000 0.00 0.00 33.07 3.33
541 542 7.013274 CCATTAGTTCTTCTTGAGGAAAACACA 59.987 37.037 0.00 0.00 33.07 3.72
542 543 7.228706 TCCATTAGTTCTTCTTGAGGAAAACAC 59.771 37.037 0.00 0.00 33.07 3.32
562 563 2.095263 GCTTTGTTTCGCTGCTCCATTA 60.095 45.455 0.00 0.00 0.00 1.90
575 576 1.822186 AGGACGGTGCGCTTTGTTT 60.822 52.632 9.73 0.00 0.00 2.83
580 581 1.666872 GTTACAGGACGGTGCGCTT 60.667 57.895 9.73 0.00 0.00 4.68
639 643 8.007716 CGTCGTTCTATTTTGATGTTACAGTTT 58.992 33.333 0.00 0.00 0.00 2.66
728 764 2.679934 CGCACTGCTGATTTGCCGA 61.680 57.895 0.00 0.00 32.31 5.54
729 765 2.202388 CGCACTGCTGATTTGCCG 60.202 61.111 0.00 0.00 32.31 5.69
730 766 1.154150 GTCGCACTGCTGATTTGCC 60.154 57.895 0.00 0.00 32.31 4.52
731 767 1.510623 CGTCGCACTGCTGATTTGC 60.511 57.895 0.00 0.00 0.00 3.68
732 768 1.510623 GCGTCGCACTGCTGATTTG 60.511 57.895 13.44 0.00 0.00 2.32
733 769 2.863153 GCGTCGCACTGCTGATTT 59.137 55.556 13.44 0.00 0.00 2.17
734 770 3.481903 CGCGTCGCACTGCTGATT 61.482 61.111 18.75 0.00 0.00 2.57
735 771 4.724602 ACGCGTCGCACTGCTGAT 62.725 61.111 18.75 0.00 0.00 2.90
918 4277 0.030369 AGGTCGTGAGTCGTTGTGTC 59.970 55.000 0.00 0.00 40.80 3.67
935 4297 3.149196 TGCTCTTTGGCTTACAGAAAGG 58.851 45.455 0.00 0.00 35.58 3.11
997 4394 0.620556 TGCCCTTGGAACTCCATCTC 59.379 55.000 0.00 0.00 46.97 2.75
1184 4582 4.201980 TGTCGACAAAGTATCATACCGAGG 60.202 45.833 17.62 0.00 0.00 4.63
1199 4597 2.861335 GTGTACATGTGTGTGTCGACAA 59.139 45.455 21.95 4.26 39.39 3.18
1555 7779 2.030946 GTGTAGCTATGCAAAGGAAGCG 59.969 50.000 0.00 0.00 39.94 4.68
1584 7828 1.334160 TCACGTGGAACTAGAAGGCA 58.666 50.000 17.00 0.00 31.75 4.75
1591 7835 5.818336 TGAACAAAAAGATCACGTGGAACTA 59.182 36.000 17.00 0.00 31.75 2.24
1766 8021 4.508584 GGGTAAAAAGAAGGACCCTCATGT 60.509 45.833 1.55 0.00 46.92 3.21
1767 8022 4.017126 GGGTAAAAAGAAGGACCCTCATG 58.983 47.826 1.55 0.00 46.92 3.07
1805 8064 5.615495 TTAATCATTAACTCGAACGCTCG 57.385 39.130 0.82 0.82 46.87 5.03
1850 8110 4.858692 CCTTTGCTGAAAACATGATAACCG 59.141 41.667 0.00 0.00 0.00 4.44
1999 8269 5.212194 CGTTGAAAATTTGTTCATCCGTCT 58.788 37.500 0.00 0.00 37.36 4.18
2003 8273 5.222631 AGAGCGTTGAAAATTTGTTCATCC 58.777 37.500 0.00 0.00 37.36 3.51
2081 8429 8.559175 ACAGAGGGAGTAGAAAACTATAGTACT 58.441 37.037 5.65 5.37 39.07 2.73
2082 8430 8.750515 ACAGAGGGAGTAGAAAACTATAGTAC 57.249 38.462 5.65 0.00 39.07 2.73
2083 8431 7.997803 GGACAGAGGGAGTAGAAAACTATAGTA 59.002 40.741 5.65 0.00 39.07 1.82
2084 8432 6.834969 GGACAGAGGGAGTAGAAAACTATAGT 59.165 42.308 0.00 0.00 39.07 2.12
2085 8433 6.016943 CGGACAGAGGGAGTAGAAAACTATAG 60.017 46.154 0.00 0.00 39.07 1.31
2086 8434 5.826737 CGGACAGAGGGAGTAGAAAACTATA 59.173 44.000 0.00 0.00 39.07 1.31
2087 8435 4.645588 CGGACAGAGGGAGTAGAAAACTAT 59.354 45.833 0.00 0.00 39.07 2.12
2088 8436 4.015084 CGGACAGAGGGAGTAGAAAACTA 58.985 47.826 0.00 0.00 39.07 2.24
2089 8437 2.826725 CGGACAGAGGGAGTAGAAAACT 59.173 50.000 0.00 0.00 42.80 2.66
2090 8438 2.824341 TCGGACAGAGGGAGTAGAAAAC 59.176 50.000 0.00 0.00 0.00 2.43
2091 8439 3.165087 TCGGACAGAGGGAGTAGAAAA 57.835 47.619 0.00 0.00 0.00 2.29
2092 8440 2.893215 TCGGACAGAGGGAGTAGAAA 57.107 50.000 0.00 0.00 0.00 2.52
2093 8441 2.893215 TTCGGACAGAGGGAGTAGAA 57.107 50.000 0.00 0.00 0.00 2.10
2094 8442 2.893215 TTTCGGACAGAGGGAGTAGA 57.107 50.000 0.00 0.00 0.00 2.59
2105 8453 3.810941 GTGGTGACAAGTATTTTCGGACA 59.189 43.478 0.00 0.00 46.06 4.02
2109 8457 4.822036 TTGGTGGTGACAAGTATTTTCG 57.178 40.909 0.00 0.00 46.06 3.46
2110 8458 9.535878 TTTATTTTGGTGGTGACAAGTATTTTC 57.464 29.630 0.00 0.00 46.06 2.29
2187 10699 9.393249 GTTCGAAAATACTTGTCATCAAAATGA 57.607 29.630 0.00 0.00 39.63 2.57
2188 10700 8.357966 CGTTCGAAAATACTTGTCATCAAAATG 58.642 33.333 0.00 0.00 32.87 2.32
2190 10702 7.631822 TCGTTCGAAAATACTTGTCATCAAAA 58.368 30.769 0.00 0.00 32.87 2.44
2194 10706 5.220416 CCCTCGTTCGAAAATACTTGTCATC 60.220 44.000 0.00 0.00 0.00 2.92
2197 10709 4.240096 TCCCTCGTTCGAAAATACTTGTC 58.760 43.478 0.00 0.00 0.00 3.18
2201 10713 5.848833 ATACTCCCTCGTTCGAAAATACT 57.151 39.130 0.00 0.00 0.00 2.12
2270 11420 8.630917 AGCTCCTTATGAGATTGAAATCAAATG 58.369 33.333 5.86 0.00 44.42 2.32
2319 11469 9.635404 TCAGTTTTAAAATTTGAGAACCTAGGA 57.365 29.630 17.98 0.00 0.00 2.94
2371 11521 9.171877 AGAAAGCAAAATTGTCAACCAAATTTA 57.828 25.926 0.00 0.00 34.64 1.40
2384 11534 5.406477 GGAGCCTGTTAAGAAAGCAAAATTG 59.594 40.000 0.00 0.00 0.00 2.32
2385 11535 5.511373 GGGAGCCTGTTAAGAAAGCAAAATT 60.511 40.000 0.00 0.00 0.00 1.82
2401 11551 8.519799 TTAAACTAATTGAATTAGGGAGCCTG 57.480 34.615 24.18 3.18 45.05 4.85
2420 11570 9.634021 GAATTAGGGAATCTCAGGAATTAAACT 57.366 33.333 0.00 0.00 0.00 2.66
2421 11571 9.634021 AGAATTAGGGAATCTCAGGAATTAAAC 57.366 33.333 0.00 0.00 0.00 2.01
2431 11581 5.664908 AGAGCTTCAGAATTAGGGAATCTCA 59.335 40.000 14.37 0.00 36.66 3.27
2435 11585 6.725364 TGAAAGAGCTTCAGAATTAGGGAAT 58.275 36.000 0.00 0.00 39.20 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.