Multiple sequence alignment - TraesCS5B01G426100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G426100 chr5B 100.000 3909 0 0 484 4392 601416131 601420039 0.000000e+00 7219.0
1 TraesCS5B01G426100 chr5B 100.000 52 0 0 1 52 601415648 601415699 3.620000e-16 97.1
2 TraesCS5B01G426100 chr5A 90.368 3509 229 59 484 3945 609271229 609274675 0.000000e+00 4506.0
3 TraesCS5B01G426100 chr5A 100.000 49 0 0 2 50 609271154 609271202 1.680000e-14 91.6
4 TraesCS5B01G426100 chr5D 89.974 2294 136 40 484 2730 488432730 488434976 0.000000e+00 2876.0
5 TraesCS5B01G426100 chr5D 92.170 447 27 5 2772 3210 488434985 488435431 3.730000e-175 625.0
6 TraesCS5B01G426100 chr5D 81.073 354 40 15 3301 3641 488435463 488435802 1.570000e-64 257.0
7 TraesCS5B01G426100 chr5D 80.460 174 22 8 4229 4392 488436764 488436935 5.970000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G426100 chr5B 601415648 601420039 4391 False 3658.05 7219 100.00000 1 4392 2 chr5B.!!$F1 4391
1 TraesCS5B01G426100 chr5A 609271154 609274675 3521 False 2298.80 4506 95.18400 2 3945 2 chr5A.!!$F1 3943
2 TraesCS5B01G426100 chr5D 488432730 488436935 4205 False 970.00 2876 85.91925 484 4392 4 chr5D.!!$F1 3908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 786 0.756815 GATCATGGGCCCCACCTTTC 60.757 60.0 22.27 4.99 35.80 2.62 F
1251 1267 0.108992 TTTACCTCTGCGTGCTACGG 60.109 55.0 10.02 0.00 42.82 4.02 F
2411 2468 0.179073 AGCAACTACGCTATGGGCTG 60.179 55.0 0.00 0.00 41.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2508 0.526211 GGAACAATTGGAAGGCCGTC 59.474 55.0 10.61 10.61 36.79 4.79 R
2685 2742 1.490621 GCATGAGCAACCAACAACAC 58.509 50.0 0.00 0.00 41.58 3.32 R
4247 4846 0.033920 TAATCATCTGCAGCGGCGAT 59.966 50.0 12.98 0.00 45.35 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.672854 CGGCGAATCTACCACCAGGA 61.673 60.000 0.00 0.00 38.69 3.86
589 590 2.444895 ACCTCCTCCCGCATCTCC 60.445 66.667 0.00 0.00 0.00 3.71
590 591 3.237741 CCTCCTCCCGCATCTCCC 61.238 72.222 0.00 0.00 0.00 4.30
754 758 1.215673 TCAACCCAAAGCCCACACTAA 59.784 47.619 0.00 0.00 0.00 2.24
755 759 1.339929 CAACCCAAAGCCCACACTAAC 59.660 52.381 0.00 0.00 0.00 2.34
763 767 2.589157 CCCACACTAACTGGGCCGA 61.589 63.158 0.00 0.00 42.22 5.54
764 768 1.602237 CCACACTAACTGGGCCGAT 59.398 57.895 0.00 0.00 0.00 4.18
781 786 0.756815 GATCATGGGCCCCACCTTTC 60.757 60.000 22.27 4.99 35.80 2.62
783 788 2.868566 ATGGGCCCCACCTTTCCA 60.869 61.111 22.27 0.00 35.80 3.53
811 820 1.534235 CTATCCACCGGGCCTAGCT 60.534 63.158 6.32 0.00 0.00 3.32
826 835 2.020100 TAGCTCAGGCCCGTATCCCT 62.020 60.000 0.00 0.00 39.73 4.20
828 837 2.520982 TCAGGCCCGTATCCCTCG 60.521 66.667 0.00 0.00 0.00 4.63
829 838 2.838225 CAGGCCCGTATCCCTCGT 60.838 66.667 0.00 0.00 0.00 4.18
830 839 2.521224 AGGCCCGTATCCCTCGTC 60.521 66.667 0.00 0.00 0.00 4.20
852 861 0.962855 TCTCTCTCCGTGCTGACCTG 60.963 60.000 0.00 0.00 0.00 4.00
853 862 0.962855 CTCTCTCCGTGCTGACCTGA 60.963 60.000 0.00 0.00 0.00 3.86
854 863 1.214062 CTCTCCGTGCTGACCTGAC 59.786 63.158 0.00 0.00 0.00 3.51
892 908 1.627329 ACCTGCAGCATCTCTTCTTCA 59.373 47.619 8.66 0.00 0.00 3.02
1086 1102 1.272147 GGAGGTGAGCCAGGTTTTGAT 60.272 52.381 0.00 0.00 37.19 2.57
1125 1141 3.873883 GCCGCTGATGAGCTGTGC 61.874 66.667 1.81 0.00 43.77 4.57
1159 1175 1.028330 CGTGAGTAGGTGGCTCCGTA 61.028 60.000 0.00 0.00 41.99 4.02
1168 1184 2.344129 GGCTCCGTATGCTAGGGC 59.656 66.667 0.00 0.00 39.26 5.19
1205 1221 1.719246 TCTCGAGAAATTTGTGCGACG 59.281 47.619 14.01 0.00 0.00 5.12
1211 1227 2.031245 AGAAATTTGTGCGACGAATGCA 60.031 40.909 0.00 0.00 40.70 3.96
1222 1238 1.262683 GACGAATGCATCTTAGCTGCC 59.737 52.381 0.00 0.00 38.89 4.85
1227 1243 4.436986 CGAATGCATCTTAGCTGCCATATG 60.437 45.833 0.00 0.00 38.89 1.78
1249 1265 2.202566 GGATTTACCTCTGCGTGCTAC 58.797 52.381 0.00 0.00 35.41 3.58
1250 1266 1.852895 GATTTACCTCTGCGTGCTACG 59.147 52.381 4.61 4.61 45.88 3.51
1251 1267 0.108992 TTTACCTCTGCGTGCTACGG 60.109 55.000 10.02 0.00 42.82 4.02
1252 1268 1.246056 TTACCTCTGCGTGCTACGGT 61.246 55.000 10.02 0.00 42.82 4.83
1253 1269 1.651240 TACCTCTGCGTGCTACGGTC 61.651 60.000 10.02 0.00 42.82 4.79
1254 1270 2.577112 CTCTGCGTGCTACGGTCG 60.577 66.667 10.02 0.00 42.82 4.79
1255 1271 3.324099 CTCTGCGTGCTACGGTCGT 62.324 63.158 10.02 0.69 42.82 4.34
1256 1272 2.874780 CTGCGTGCTACGGTCGTC 60.875 66.667 0.00 0.00 42.82 4.20
1257 1273 3.604494 CTGCGTGCTACGGTCGTCA 62.604 63.158 0.00 0.00 42.82 4.35
1258 1274 3.170585 GCGTGCTACGGTCGTCAC 61.171 66.667 0.00 2.48 42.82 3.67
1276 1309 4.319046 CGTCACTTGACTTTGGTGATCTTG 60.319 45.833 7.74 0.00 42.66 3.02
1286 1319 2.040544 GTGATCTTGGGTGTGGGCG 61.041 63.158 0.00 0.00 0.00 6.13
1299 1332 1.002659 TGTGGGCGTGCTATGTTAGTT 59.997 47.619 0.00 0.00 0.00 2.24
1300 1333 1.396996 GTGGGCGTGCTATGTTAGTTG 59.603 52.381 0.00 0.00 0.00 3.16
1302 1335 1.014352 GGCGTGCTATGTTAGTTGGG 58.986 55.000 0.00 0.00 0.00 4.12
1304 1337 2.081462 GCGTGCTATGTTAGTTGGGTT 58.919 47.619 0.00 0.00 0.00 4.11
1306 1339 3.425758 GCGTGCTATGTTAGTTGGGTTTC 60.426 47.826 0.00 0.00 0.00 2.78
1307 1340 3.749088 CGTGCTATGTTAGTTGGGTTTCA 59.251 43.478 0.00 0.00 0.00 2.69
1308 1341 4.394920 CGTGCTATGTTAGTTGGGTTTCAT 59.605 41.667 0.00 0.00 0.00 2.57
1309 1342 5.583061 CGTGCTATGTTAGTTGGGTTTCATA 59.417 40.000 0.00 0.00 0.00 2.15
1310 1343 6.260050 CGTGCTATGTTAGTTGGGTTTCATAT 59.740 38.462 0.00 0.00 0.00 1.78
1314 1347 8.850156 GCTATGTTAGTTGGGTTTCATATCATT 58.150 33.333 0.00 0.00 0.00 2.57
1327 1360 7.418254 GGTTTCATATCATTCAGAGGCCATTTT 60.418 37.037 5.01 0.00 0.00 1.82
1337 1370 1.683385 GAGGCCATTTTGCATAGGGTC 59.317 52.381 5.01 0.00 0.00 4.46
1351 1384 1.187087 AGGGTCAATCGAGTGAGGAC 58.813 55.000 17.01 9.50 33.74 3.85
1355 1388 3.243569 GGGTCAATCGAGTGAGGACATAG 60.244 52.174 17.01 0.00 35.29 2.23
1357 1390 2.362397 TCAATCGAGTGAGGACATAGGC 59.638 50.000 12.21 0.00 0.00 3.93
1358 1391 2.073252 ATCGAGTGAGGACATAGGCA 57.927 50.000 0.00 0.00 0.00 4.75
1366 1399 2.779430 TGAGGACATAGGCAATCCACAT 59.221 45.455 0.00 0.00 34.73 3.21
1397 1430 3.643320 AGATCGAGGGAGATGCAAATGTA 59.357 43.478 0.00 0.00 0.00 2.29
1398 1431 3.904800 TCGAGGGAGATGCAAATGTAA 57.095 42.857 0.00 0.00 0.00 2.41
1399 1432 4.214986 TCGAGGGAGATGCAAATGTAAA 57.785 40.909 0.00 0.00 0.00 2.01
1400 1433 4.584874 TCGAGGGAGATGCAAATGTAAAA 58.415 39.130 0.00 0.00 0.00 1.52
1401 1434 5.192927 TCGAGGGAGATGCAAATGTAAAAT 58.807 37.500 0.00 0.00 0.00 1.82
1402 1435 5.066375 TCGAGGGAGATGCAAATGTAAAATG 59.934 40.000 0.00 0.00 0.00 2.32
1403 1436 5.163622 CGAGGGAGATGCAAATGTAAAATGT 60.164 40.000 0.00 0.00 0.00 2.71
1404 1437 6.610075 AGGGAGATGCAAATGTAAAATGTT 57.390 33.333 0.00 0.00 0.00 2.71
1431 1464 2.475187 GCTATCAGCAAGCTTCGTTGTG 60.475 50.000 0.00 0.00 41.89 3.33
1438 1471 2.851008 GCAAGCTTCGTTGTGTCAACTC 60.851 50.000 0.00 0.00 0.00 3.01
1439 1472 1.583054 AGCTTCGTTGTGTCAACTCC 58.417 50.000 10.21 0.00 0.00 3.85
1440 1473 1.134521 AGCTTCGTTGTGTCAACTCCA 60.135 47.619 10.21 0.00 0.00 3.86
1464 1497 4.114794 ACTGAAATTGTTTCTTGCACAGC 58.885 39.130 0.00 0.00 40.32 4.40
1497 1530 3.904571 TGTCGTTTACGCACTTACAGAT 58.095 40.909 0.00 0.00 39.60 2.90
1502 1535 7.430211 TGTCGTTTACGCACTTACAGATTATAG 59.570 37.037 0.00 0.00 39.60 1.31
1513 1546 8.265055 CACTTACAGATTATAGGTTTCTTCCCA 58.735 37.037 0.00 0.00 0.00 4.37
1561 1594 7.534085 TGTCGGTTTTGCAGTATTCTATAAG 57.466 36.000 0.00 0.00 0.00 1.73
1629 1662 0.245539 TACGTAAGCTGGCACTGACC 59.754 55.000 0.00 0.00 45.62 4.02
1753 1786 8.138712 TGATAATTGGGATTATTTTTGTACCGC 58.861 33.333 0.00 0.00 38.31 5.68
1758 1791 4.399934 GGGATTATTTTTGTACCGCTTGGA 59.600 41.667 0.00 0.00 36.26 3.53
2022 2055 8.815565 AGTTTCTTATCAGATCTAGTCAGACA 57.184 34.615 2.66 0.00 32.25 3.41
2024 2057 9.677567 GTTTCTTATCAGATCTAGTCAGACATC 57.322 37.037 2.66 0.00 32.25 3.06
2108 2164 7.875041 GTGAGATTACATCAGGCACATATTACT 59.125 37.037 0.00 0.00 32.25 2.24
2110 2166 7.739825 AGATTACATCAGGCACATATTACTGT 58.260 34.615 0.00 0.00 32.92 3.55
2129 2185 8.617290 TTACTGTTTTTCTTGTCCTATCTTCC 57.383 34.615 0.00 0.00 0.00 3.46
2169 2226 9.736023 ACTTGTATGTTCATTCTTCAGAAAAAC 57.264 29.630 9.61 9.61 37.61 2.43
2170 2227 8.781067 TTGTATGTTCATTCTTCAGAAAAACG 57.219 30.769 10.95 0.00 36.96 3.60
2200 2257 9.696572 AGACTTGAGAGTGTATATTTACAGGTA 57.303 33.333 0.00 0.00 38.98 3.08
2276 2333 8.790718 TCTACCAGAATCATCGTAGGTAATTAC 58.209 37.037 7.09 7.09 34.35 1.89
2279 2336 6.362551 CCAGAATCATCGTAGGTAATTACACG 59.637 42.308 17.16 17.50 35.78 4.49
2289 2346 8.031864 TCGTAGGTAATTACACGATTGGTTAAA 58.968 33.333 20.87 3.13 38.40 1.52
2302 2359 8.717821 CACGATTGGTTAAATTTACTTCTCAGA 58.282 33.333 0.00 0.00 0.00 3.27
2308 2365 9.273016 TGGTTAAATTTACTTCTCAGAGTCTTG 57.727 33.333 0.00 0.00 0.00 3.02
2312 2369 8.980481 AAATTTACTTCTCAGAGTCTTGGAAA 57.020 30.769 0.00 0.00 0.00 3.13
2339 2396 3.435275 ACACTATGTCCTCTCTTGCTGA 58.565 45.455 0.00 0.00 0.00 4.26
2356 2413 5.596836 TGCTGAAACAAAAGGAATCTGTT 57.403 34.783 0.00 0.00 34.81 3.16
2390 2447 6.979238 ACAGGTATATCAAAAGTAGAAGCGAC 59.021 38.462 0.00 0.00 0.00 5.19
2403 2460 3.550656 GCGACAAGCAACTACGCT 58.449 55.556 0.00 0.00 46.67 5.07
2411 2468 0.179073 AGCAACTACGCTATGGGCTG 60.179 55.000 0.00 0.00 41.55 4.85
2412 2469 0.179084 GCAACTACGCTATGGGCTGA 60.179 55.000 0.00 0.00 39.13 4.26
2438 2495 2.113807 ACTGATAGCTCATGCAGTCCA 58.886 47.619 0.00 0.00 42.74 4.02
2446 2503 4.592942 AGCTCATGCAGTCCAATAGAAAA 58.407 39.130 0.00 0.00 42.74 2.29
2451 2508 3.002791 TGCAGTCCAATAGAAAAGAGCG 58.997 45.455 0.00 0.00 0.00 5.03
2463 2520 2.391724 AAAGAGCGACGGCCTTCCAA 62.392 55.000 3.22 0.00 41.24 3.53
2525 2582 7.127012 TGATACTTATGATTTTACCCGTGGA 57.873 36.000 0.00 0.00 0.00 4.02
2538 2595 2.479566 CCGTGGATCCATGGGAATAG 57.520 55.000 36.75 16.30 46.47 1.73
2547 2604 4.437682 TCCATGGGAATAGTGGTTGATC 57.562 45.455 13.02 0.00 34.61 2.92
2555 2612 5.359860 GGGAATAGTGGTTGATCGGAAAAAT 59.640 40.000 0.00 0.00 0.00 1.82
2579 2636 2.034878 TCATGGAGAAGTGATCGGGAG 58.965 52.381 0.00 0.00 0.00 4.30
2627 2684 6.546484 TCCTTTCAACTTTCAGAATGGATCT 58.454 36.000 0.00 0.00 40.82 2.75
2676 2733 6.551601 CCCTGATATACCAGTGAGTACTTCTT 59.448 42.308 0.00 0.00 34.07 2.52
2685 2742 8.514330 ACCAGTGAGTACTTCTTTATCTAGAG 57.486 38.462 0.00 0.00 34.07 2.43
2744 2801 9.787435 TTTCCTTAAGAAGACAAGTTAATGCTA 57.213 29.630 3.36 0.00 35.40 3.49
2753 2810 9.600646 GAAGACAAGTTAATGCTAGTTTTCTTC 57.399 33.333 0.00 0.00 35.92 2.87
2754 2811 8.100508 AGACAAGTTAATGCTAGTTTTCTTCC 57.899 34.615 0.00 0.00 0.00 3.46
2757 2814 8.860088 ACAAGTTAATGCTAGTTTTCTTCCATT 58.140 29.630 0.00 0.00 35.35 3.16
2770 2827 9.366216 AGTTTTCTTCCATTTTAACTGAACAAC 57.634 29.630 0.00 0.00 0.00 3.32
2780 2841 5.883503 TTAACTGAACAACGTCCTTTTGT 57.116 34.783 0.00 0.00 38.88 2.83
2807 2868 7.118101 CAGCTAAGCAATCAGGAAGATCTTATC 59.882 40.741 8.25 4.09 35.39 1.75
2861 2922 3.521560 TCGAAAGCTGTATGGTGTCATC 58.478 45.455 0.00 0.00 34.96 2.92
2887 2948 7.601886 CGAAGAGGATATACAAGCTGATGAAAT 59.398 37.037 0.00 0.00 0.00 2.17
3022 3083 6.252599 TGCATATCTTATCACTGGTTCCTT 57.747 37.500 0.00 0.00 0.00 3.36
3038 3099 4.222114 GTTCCTTGAGCATTTTCTTGTCG 58.778 43.478 0.00 0.00 0.00 4.35
3096 3157 7.787725 AGGTAATCGATAAGGTGAATGTTTC 57.212 36.000 0.00 0.00 0.00 2.78
3106 3169 8.980481 ATAAGGTGAATGTTTCGAATTATCCT 57.020 30.769 0.00 0.00 0.00 3.24
3126 3189 6.187727 TCCTTTGTGACCATCTTCTACTTT 57.812 37.500 0.00 0.00 0.00 2.66
3190 3257 3.705072 ACTACTAGTCTTTGATTCCCCGG 59.295 47.826 0.00 0.00 0.00 5.73
3225 3294 3.399330 ACACTGTAATTACGCAGCAGTT 58.601 40.909 10.92 0.00 38.21 3.16
3243 3312 5.061179 GCAGTTAACAAAACCTCCTAGTGA 58.939 41.667 8.61 0.00 0.00 3.41
3244 3313 5.049612 GCAGTTAACAAAACCTCCTAGTGAC 60.050 44.000 8.61 0.00 0.00 3.67
3252 3321 3.870633 ACCTCCTAGTGACGATTGTTC 57.129 47.619 0.00 0.00 0.00 3.18
3264 3333 5.283717 GTGACGATTGTTCAATTGCATGTAC 59.716 40.000 11.37 0.00 0.00 2.90
3278 3347 3.309410 TGCATGTACATTCACATACGCTG 59.691 43.478 5.37 0.00 37.02 5.18
3281 3350 5.556382 GCATGTACATTCACATACGCTGTAC 60.556 44.000 5.37 0.00 41.46 2.90
3284 3353 3.920446 ACATTCACATACGCTGTACACA 58.080 40.909 0.00 0.00 35.91 3.72
3285 3354 3.678072 ACATTCACATACGCTGTACACAC 59.322 43.478 0.00 0.00 35.91 3.82
3410 3479 6.884280 ACTAAGCTTCTGTGCATAGTTTTT 57.116 33.333 10.52 4.38 42.44 1.94
3442 3513 1.532090 GGTACACGCTCTGATCGACAG 60.532 57.143 8.00 8.24 46.97 3.51
3445 3516 1.810755 ACACGCTCTGATCGACAGTAA 59.189 47.619 8.00 0.00 45.86 2.24
3448 3519 1.402259 CGCTCTGATCGACAGTAACCT 59.598 52.381 12.62 0.00 45.86 3.50
3458 3529 3.508793 TCGACAGTAACCTCCCTGTAAAG 59.491 47.826 0.00 0.00 41.80 1.85
3461 3532 2.304761 CAGTAACCTCCCTGTAAAGCCA 59.695 50.000 0.00 0.00 0.00 4.75
3471 3543 4.538490 TCCCTGTAAAGCCAGAAGGAAATA 59.462 41.667 0.00 0.00 36.89 1.40
3501 3573 5.351233 TCTTTTACCTGTAACAACATGCG 57.649 39.130 0.00 0.00 0.00 4.73
3514 3586 3.698029 AACATGCGGTTGAGATAATGC 57.302 42.857 0.00 0.00 38.60 3.56
3526 3599 5.537300 TGAGATAATGCTCCAAGTACTCC 57.463 43.478 0.00 0.00 33.95 3.85
3527 3600 4.345257 TGAGATAATGCTCCAAGTACTCCC 59.655 45.833 0.00 0.00 33.95 4.30
3528 3601 4.561752 AGATAATGCTCCAAGTACTCCCT 58.438 43.478 0.00 0.00 0.00 4.20
3529 3602 4.591072 AGATAATGCTCCAAGTACTCCCTC 59.409 45.833 0.00 0.00 0.00 4.30
3569 3644 2.846532 CACCCTGGCCAGAGGTTT 59.153 61.111 34.91 14.93 32.20 3.27
3642 3723 3.126000 GCAGCTTCAGGTTTCATACACTC 59.874 47.826 0.00 0.00 0.00 3.51
3709 3790 6.316140 TCATACACATACTTGGAGCATGAAAC 59.684 38.462 0.00 0.00 0.00 2.78
3733 3814 4.928615 GCTTGATGACTGCTGAGGATATAC 59.071 45.833 0.00 0.00 0.00 1.47
3757 3862 1.378514 GGCCATGGTTCACCGACAT 60.379 57.895 14.67 0.00 39.43 3.06
3758 3863 1.656818 GGCCATGGTTCACCGACATG 61.657 60.000 14.67 0.00 41.15 3.21
3759 3864 0.960364 GCCATGGTTCACCGACATGT 60.960 55.000 14.67 0.00 40.16 3.21
3760 3865 1.533625 CCATGGTTCACCGACATGTT 58.466 50.000 2.57 0.00 40.16 2.71
3761 3866 1.468520 CCATGGTTCACCGACATGTTC 59.531 52.381 2.57 0.00 40.16 3.18
3771 3876 2.592796 CGACATGTTCGTGCAATTCA 57.407 45.000 0.00 0.00 43.24 2.57
3772 3877 2.498905 CGACATGTTCGTGCAATTCAG 58.501 47.619 0.00 0.00 43.24 3.02
3773 3878 2.725759 CGACATGTTCGTGCAATTCAGG 60.726 50.000 0.00 0.00 43.24 3.86
3774 3879 1.068333 ACATGTTCGTGCAATTCAGGC 60.068 47.619 0.00 0.00 0.00 4.85
3775 3880 0.527565 ATGTTCGTGCAATTCAGGCC 59.472 50.000 0.00 0.00 0.00 5.19
3776 3881 0.821301 TGTTCGTGCAATTCAGGCCA 60.821 50.000 5.01 0.00 0.00 5.36
3777 3882 0.109597 GTTCGTGCAATTCAGGCCAG 60.110 55.000 5.01 0.00 0.00 4.85
3778 3883 1.865788 TTCGTGCAATTCAGGCCAGC 61.866 55.000 5.01 0.00 0.00 4.85
3779 3884 2.180017 GTGCAATTCAGGCCAGCG 59.820 61.111 5.01 0.00 0.00 5.18
3780 3885 3.751246 TGCAATTCAGGCCAGCGC 61.751 61.111 5.01 0.00 0.00 5.92
3781 3886 3.446570 GCAATTCAGGCCAGCGCT 61.447 61.111 2.64 2.64 34.44 5.92
3782 3887 2.796651 CAATTCAGGCCAGCGCTC 59.203 61.111 7.13 0.00 34.44 5.03
3783 3888 1.748122 CAATTCAGGCCAGCGCTCT 60.748 57.895 7.13 0.00 34.44 4.09
3784 3889 1.748122 AATTCAGGCCAGCGCTCTG 60.748 57.895 7.13 13.12 40.02 3.35
3785 3890 2.189191 AATTCAGGCCAGCGCTCTGA 62.189 55.000 19.99 19.99 42.95 3.27
3820 3925 5.370679 AGGAAAACTAGAGCCGTGTAAAAA 58.629 37.500 0.00 0.00 0.00 1.94
3832 3948 7.224753 AGAGCCGTGTAAAAACTGATATATGTG 59.775 37.037 0.00 0.00 0.00 3.21
3834 3950 7.982919 AGCCGTGTAAAAACTGATATATGTGTA 59.017 33.333 0.00 0.00 0.00 2.90
3876 3992 7.279750 TGGATTCCATGATGTTGTATGAATG 57.720 36.000 0.00 0.00 0.00 2.67
3877 3993 7.061688 TGGATTCCATGATGTTGTATGAATGA 58.938 34.615 0.00 0.00 0.00 2.57
3929 4058 1.003580 TCGAAGCATGCTTTTCCTCCT 59.996 47.619 32.36 9.33 36.26 3.69
3933 4062 2.444421 AGCATGCTTTTCCTCCTCTTG 58.556 47.619 16.30 0.00 0.00 3.02
3945 4074 3.841845 TCCTCCTCTTGAAAAATCCGGTA 59.158 43.478 0.00 0.00 0.00 4.02
3968 4358 2.046938 GACGACAGTCCCACCTGAA 58.953 57.895 0.00 0.00 41.41 3.02
3973 4371 0.759346 ACAGTCCCACCTGAACAGAC 59.241 55.000 3.19 0.00 36.30 3.51
3974 4372 1.051812 CAGTCCCACCTGAACAGACT 58.948 55.000 3.19 0.00 38.30 3.24
3975 4373 1.001406 CAGTCCCACCTGAACAGACTC 59.999 57.143 3.19 0.00 35.67 3.36
3977 4375 0.836400 TCCCACCTGAACAGACTCCC 60.836 60.000 3.19 0.00 0.00 4.30
3979 4377 0.987294 CCACCTGAACAGACTCCCAT 59.013 55.000 3.19 0.00 0.00 4.00
3981 4379 0.898320 ACCTGAACAGACTCCCATCG 59.102 55.000 3.19 0.00 0.00 3.84
3989 4387 2.755876 ACTCCCATCGAGCGCAGA 60.756 61.111 11.47 9.45 43.01 4.26
3991 4389 4.193334 TCCCATCGAGCGCAGACG 62.193 66.667 11.47 12.84 44.07 4.18
3995 4393 2.202492 ATCGAGCGCAGACGTGAC 60.202 61.111 11.47 0.00 42.83 3.67
3996 4394 2.978018 ATCGAGCGCAGACGTGACA 61.978 57.895 11.47 0.00 42.83 3.58
3997 4395 3.461982 CGAGCGCAGACGTGACAC 61.462 66.667 11.47 0.00 42.83 3.67
4003 4401 1.729838 GCAGACGTGACACTCGACC 60.730 63.158 3.68 0.00 0.00 4.79
4007 4405 0.385723 GACGTGACACTCGACCACTC 60.386 60.000 3.68 0.00 0.00 3.51
4010 4408 0.669077 GTGACACTCGACCACTCTGT 59.331 55.000 0.00 0.00 0.00 3.41
4012 4410 0.241481 GACACTCGACCACTCTGTCC 59.759 60.000 0.00 0.00 31.35 4.02
4014 4412 1.073444 ACACTCGACCACTCTGTCCTA 59.927 52.381 0.00 0.00 31.35 2.94
4015 4413 1.469308 CACTCGACCACTCTGTCCTAC 59.531 57.143 0.00 0.00 31.35 3.18
4016 4414 1.351683 ACTCGACCACTCTGTCCTACT 59.648 52.381 0.00 0.00 31.35 2.57
4017 4415 2.011222 CTCGACCACTCTGTCCTACTC 58.989 57.143 0.00 0.00 31.35 2.59
4056 4454 1.408340 CGATCAGAGGCTCACATCACT 59.592 52.381 18.26 0.00 0.00 3.41
4057 4455 2.543445 CGATCAGAGGCTCACATCACTC 60.543 54.545 18.26 2.65 0.00 3.51
4058 4456 1.928868 TCAGAGGCTCACATCACTCA 58.071 50.000 18.26 0.00 32.52 3.41
4059 4457 1.547820 TCAGAGGCTCACATCACTCAC 59.452 52.381 18.26 0.00 32.52 3.51
4060 4458 1.274447 CAGAGGCTCACATCACTCACA 59.726 52.381 18.26 0.00 32.52 3.58
4062 4460 0.037882 AGGCTCACATCACTCACACG 60.038 55.000 0.00 0.00 0.00 4.49
4063 4461 1.630244 GGCTCACATCACTCACACGC 61.630 60.000 0.00 0.00 0.00 5.34
4064 4462 0.668706 GCTCACATCACTCACACGCT 60.669 55.000 0.00 0.00 0.00 5.07
4065 4463 1.066136 CTCACATCACTCACACGCTG 58.934 55.000 0.00 0.00 0.00 5.18
4066 4464 0.673437 TCACATCACTCACACGCTGA 59.327 50.000 0.00 0.00 0.00 4.26
4067 4465 0.786581 CACATCACTCACACGCTGAC 59.213 55.000 0.00 0.00 0.00 3.51
4068 4466 0.389025 ACATCACTCACACGCTGACA 59.611 50.000 0.00 0.00 0.00 3.58
4069 4467 0.786581 CATCACTCACACGCTGACAC 59.213 55.000 0.00 0.00 0.00 3.67
4084 4607 0.393132 GACACCCTAAAGCTGCCCTC 60.393 60.000 0.00 0.00 0.00 4.30
4118 4675 7.623278 TGCCTTTTAATTTCCCCTCTATGATTT 59.377 33.333 0.00 0.00 0.00 2.17
4127 4684 2.485479 CCCTCTATGATTTGGTCCCGTG 60.485 54.545 0.00 0.00 0.00 4.94
4142 4699 1.694150 CCCGTGTCTCCACCATCATAT 59.306 52.381 0.00 0.00 38.41 1.78
4143 4700 2.289072 CCCGTGTCTCCACCATCATATC 60.289 54.545 0.00 0.00 38.41 1.63
4144 4701 2.365293 CCGTGTCTCCACCATCATATCA 59.635 50.000 0.00 0.00 38.41 2.15
4145 4702 3.007290 CCGTGTCTCCACCATCATATCAT 59.993 47.826 0.00 0.00 38.41 2.45
4146 4703 4.503817 CCGTGTCTCCACCATCATATCATT 60.504 45.833 0.00 0.00 38.41 2.57
4153 4752 6.994496 TCTCCACCATCATATCATTTTGTCTC 59.006 38.462 0.00 0.00 0.00 3.36
4154 4753 5.759763 TCCACCATCATATCATTTTGTCTCG 59.240 40.000 0.00 0.00 0.00 4.04
4170 4769 3.017314 CGGCGTCGCGTCATCTAC 61.017 66.667 11.75 0.00 0.00 2.59
4199 4798 2.896685 ACTATAGCTGGCCATCTGTCTC 59.103 50.000 19.45 0.00 0.00 3.36
4200 4799 1.798626 ATAGCTGGCCATCTGTCTCA 58.201 50.000 19.45 0.00 0.00 3.27
4201 4800 1.798626 TAGCTGGCCATCTGTCTCAT 58.201 50.000 19.45 0.00 0.00 2.90
4202 4801 0.917533 AGCTGGCCATCTGTCTCATT 59.082 50.000 8.67 0.00 0.00 2.57
4203 4802 1.134159 AGCTGGCCATCTGTCTCATTC 60.134 52.381 8.67 0.00 0.00 2.67
4204 4803 1.579698 CTGGCCATCTGTCTCATTCG 58.420 55.000 5.51 0.00 0.00 3.34
4205 4804 0.462581 TGGCCATCTGTCTCATTCGC 60.463 55.000 0.00 0.00 0.00 4.70
4206 4805 1.162800 GGCCATCTGTCTCATTCGCC 61.163 60.000 0.00 0.00 0.00 5.54
4207 4806 1.162800 GCCATCTGTCTCATTCGCCC 61.163 60.000 0.00 0.00 0.00 6.13
4208 4807 0.877649 CCATCTGTCTCATTCGCCCG 60.878 60.000 0.00 0.00 0.00 6.13
4209 4808 0.179100 CATCTGTCTCATTCGCCCGT 60.179 55.000 0.00 0.00 0.00 5.28
4210 4809 0.537188 ATCTGTCTCATTCGCCCGTT 59.463 50.000 0.00 0.00 0.00 4.44
4211 4810 0.320374 TCTGTCTCATTCGCCCGTTT 59.680 50.000 0.00 0.00 0.00 3.60
4212 4811 1.546923 TCTGTCTCATTCGCCCGTTTA 59.453 47.619 0.00 0.00 0.00 2.01
4213 4812 2.028839 TCTGTCTCATTCGCCCGTTTAA 60.029 45.455 0.00 0.00 0.00 1.52
4214 4813 2.343101 TGTCTCATTCGCCCGTTTAAG 58.657 47.619 0.00 0.00 0.00 1.85
4215 4814 2.028839 TGTCTCATTCGCCCGTTTAAGA 60.029 45.455 0.00 0.00 0.00 2.10
4216 4815 2.347755 GTCTCATTCGCCCGTTTAAGAC 59.652 50.000 0.00 0.00 0.00 3.01
4217 4816 2.232941 TCTCATTCGCCCGTTTAAGACT 59.767 45.455 0.00 0.00 0.00 3.24
4218 4817 2.343101 TCATTCGCCCGTTTAAGACTG 58.657 47.619 0.00 0.00 0.00 3.51
4219 4818 1.396996 CATTCGCCCGTTTAAGACTGG 59.603 52.381 0.00 0.00 35.86 4.00
4220 4819 0.680618 TTCGCCCGTTTAAGACTGGA 59.319 50.000 3.59 0.00 34.79 3.86
4221 4820 0.899720 TCGCCCGTTTAAGACTGGAT 59.100 50.000 3.59 0.00 34.79 3.41
4222 4821 2.101783 TCGCCCGTTTAAGACTGGATA 58.898 47.619 3.59 0.00 34.79 2.59
4223 4822 2.159198 TCGCCCGTTTAAGACTGGATAC 60.159 50.000 3.59 0.00 34.79 2.24
4256 4855 2.768833 TACTTACTGTATCGCCGCTG 57.231 50.000 0.00 0.00 0.00 5.18
4257 4856 0.527817 ACTTACTGTATCGCCGCTGC 60.528 55.000 0.00 0.00 0.00 5.25
4266 4865 0.033920 ATCGCCGCTGCAGATGATTA 59.966 50.000 20.43 0.00 37.32 1.75
4268 4867 0.234106 CGCCGCTGCAGATGATTAAG 59.766 55.000 20.43 0.00 37.32 1.85
4269 4868 0.040603 GCCGCTGCAGATGATTAAGC 60.041 55.000 20.43 3.46 37.47 3.09
4270 4869 1.302366 CCGCTGCAGATGATTAAGCA 58.698 50.000 20.43 0.00 33.41 3.91
4274 4873 1.683943 TGCAGATGATTAAGCAGGGC 58.316 50.000 0.00 3.47 32.48 5.19
4275 4874 1.213678 TGCAGATGATTAAGCAGGGCT 59.786 47.619 13.00 2.63 42.56 5.19
4277 4876 2.928334 CAGATGATTAAGCAGGGCTGT 58.072 47.619 0.00 0.00 39.62 4.40
4278 4877 2.617308 CAGATGATTAAGCAGGGCTGTG 59.383 50.000 0.00 0.00 39.62 3.66
4286 4893 2.639286 CAGGGCTGTGTTTGCGTC 59.361 61.111 0.00 0.00 0.00 5.19
4324 4931 3.733960 CGACGTGTCCCGCTCAGA 61.734 66.667 0.00 0.00 41.42 3.27
4325 4932 2.179517 GACGTGTCCCGCTCAGAG 59.820 66.667 0.00 0.00 41.42 3.35
4327 4934 4.803426 CGTGTCCCGCTCAGAGGC 62.803 72.222 0.00 0.00 0.00 4.70
4328 4935 4.459089 GTGTCCCGCTCAGAGGCC 62.459 72.222 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.072040 CGAAAGCTGGATTTATTTTGGGT 57.928 39.130 0.00 0.00 0.00 4.51
514 515 3.418068 GTCGTCCGGTCGTCGTCT 61.418 66.667 20.21 0.00 37.11 4.18
589 590 1.070758 CGGAGAGAGAGAGAGAGAGGG 59.929 61.905 0.00 0.00 0.00 4.30
590 591 1.070758 CCGGAGAGAGAGAGAGAGAGG 59.929 61.905 0.00 0.00 0.00 3.69
729 733 2.282180 GGCTTTGGGTTGAGCGGA 60.282 61.111 0.00 0.00 39.78 5.54
754 758 4.195334 GCCCATGATCGGCCCAGT 62.195 66.667 0.00 0.00 40.78 4.00
763 767 1.311059 GAAAGGTGGGGCCCATGAT 59.689 57.895 31.48 15.76 35.28 2.45
764 768 2.770130 GAAAGGTGGGGCCCATGA 59.230 61.111 31.48 1.54 35.28 3.07
781 786 0.753111 GTGGATAGCTTTGGGCCTGG 60.753 60.000 4.53 0.00 43.05 4.45
783 788 1.615262 GGTGGATAGCTTTGGGCCT 59.385 57.895 4.53 0.00 43.05 5.19
811 820 2.520982 CGAGGGATACGGGCCTGA 60.521 66.667 21.41 1.76 37.60 3.86
826 835 1.299562 GCACGGAGAGAGAGTGACGA 61.300 60.000 0.00 0.00 38.06 4.20
828 837 0.170116 CAGCACGGAGAGAGAGTGAC 59.830 60.000 0.00 0.00 38.06 3.67
829 838 0.036875 TCAGCACGGAGAGAGAGTGA 59.963 55.000 0.00 0.00 38.06 3.41
830 839 0.170116 GTCAGCACGGAGAGAGAGTG 59.830 60.000 0.00 0.00 38.77 3.51
892 908 2.200092 GGGAGAGGAGCCGGAGAT 59.800 66.667 5.05 0.00 0.00 2.75
1145 1161 1.269998 CTAGCATACGGAGCCACCTAC 59.730 57.143 0.00 0.00 36.31 3.18
1159 1175 0.692419 ACAGCTACCAGCCCTAGCAT 60.692 55.000 7.44 0.00 43.77 3.79
1168 1184 0.743688 AGATCGCAGACAGCTACCAG 59.256 55.000 0.00 0.00 42.51 4.00
1205 1221 4.458295 ACATATGGCAGCTAAGATGCATTC 59.542 41.667 7.80 0.00 45.68 2.67
1211 1227 4.923516 ATCCACATATGGCAGCTAAGAT 57.076 40.909 7.80 0.00 46.80 2.40
1222 1238 4.212004 CACGCAGAGGTAAATCCACATATG 59.788 45.833 0.00 0.00 39.02 1.78
1227 1243 0.727398 GCACGCAGAGGTAAATCCAC 59.273 55.000 0.00 0.00 39.02 4.02
1241 1257 3.170585 GTGACGACCGTAGCACGC 61.171 66.667 0.00 0.00 40.91 5.34
1254 1270 4.023707 CCAAGATCACCAAAGTCAAGTGAC 60.024 45.833 3.12 3.12 42.89 3.67
1255 1271 4.136796 CCAAGATCACCAAAGTCAAGTGA 58.863 43.478 0.00 0.00 44.11 3.41
1256 1272 3.254166 CCCAAGATCACCAAAGTCAAGTG 59.746 47.826 0.00 0.00 0.00 3.16
1257 1273 3.117512 ACCCAAGATCACCAAAGTCAAGT 60.118 43.478 0.00 0.00 0.00 3.16
1258 1274 3.254166 CACCCAAGATCACCAAAGTCAAG 59.746 47.826 0.00 0.00 0.00 3.02
1276 1309 2.824041 CATAGCACGCCCACACCC 60.824 66.667 0.00 0.00 0.00 4.61
1286 1319 5.897377 ATGAAACCCAACTAACATAGCAC 57.103 39.130 0.00 0.00 0.00 4.40
1299 1332 4.464008 GCCTCTGAATGATATGAAACCCA 58.536 43.478 0.00 0.00 0.00 4.51
1300 1333 3.823304 GGCCTCTGAATGATATGAAACCC 59.177 47.826 0.00 0.00 0.00 4.11
1302 1335 6.645790 AATGGCCTCTGAATGATATGAAAC 57.354 37.500 3.32 0.00 0.00 2.78
1304 1337 6.461927 GCAAAATGGCCTCTGAATGATATGAA 60.462 38.462 3.32 0.00 0.00 2.57
1306 1339 5.221362 TGCAAAATGGCCTCTGAATGATATG 60.221 40.000 3.32 0.00 0.00 1.78
1307 1340 4.897076 TGCAAAATGGCCTCTGAATGATAT 59.103 37.500 3.32 0.00 0.00 1.63
1308 1341 4.279982 TGCAAAATGGCCTCTGAATGATA 58.720 39.130 3.32 0.00 0.00 2.15
1309 1342 3.101437 TGCAAAATGGCCTCTGAATGAT 58.899 40.909 3.32 0.00 0.00 2.45
1310 1343 2.527497 TGCAAAATGGCCTCTGAATGA 58.473 42.857 3.32 0.00 0.00 2.57
1314 1347 2.658285 CCTATGCAAAATGGCCTCTGA 58.342 47.619 3.32 0.00 0.00 3.27
1327 1360 2.101415 CTCACTCGATTGACCCTATGCA 59.899 50.000 0.65 0.00 0.00 3.96
1337 1370 2.101415 TGCCTATGTCCTCACTCGATTG 59.899 50.000 0.00 0.00 0.00 2.67
1351 1384 5.254115 AGATGATGATGTGGATTGCCTATG 58.746 41.667 0.00 0.00 34.31 2.23
1355 1388 4.903054 TCTAGATGATGATGTGGATTGCC 58.097 43.478 0.00 0.00 0.00 4.52
1357 1390 6.628185 TCGATCTAGATGATGATGTGGATTG 58.372 40.000 10.74 0.00 35.14 2.67
1358 1391 6.127394 CCTCGATCTAGATGATGATGTGGATT 60.127 42.308 10.74 0.00 35.14 3.01
1366 1399 4.917906 TCTCCCTCGATCTAGATGATGA 57.082 45.455 10.74 4.46 35.14 2.92
1397 1430 3.129113 TGCTGATAGCGCATCAACATTTT 59.871 39.130 11.47 0.00 46.26 1.82
1398 1431 2.684374 TGCTGATAGCGCATCAACATTT 59.316 40.909 11.47 0.00 46.26 2.32
1399 1432 2.291365 TGCTGATAGCGCATCAACATT 58.709 42.857 11.47 0.00 46.26 2.71
1400 1433 1.957668 TGCTGATAGCGCATCAACAT 58.042 45.000 11.47 0.00 46.26 2.71
1401 1434 1.667212 CTTGCTGATAGCGCATCAACA 59.333 47.619 11.47 14.93 46.26 3.33
1402 1435 1.596464 GCTTGCTGATAGCGCATCAAC 60.596 52.381 11.47 12.53 46.26 3.18
1403 1436 0.659427 GCTTGCTGATAGCGCATCAA 59.341 50.000 11.47 3.10 46.26 2.57
1404 1437 0.179065 AGCTTGCTGATAGCGCATCA 60.179 50.000 11.47 15.51 46.26 3.07
1431 1464 7.875971 AGAAACAATTTCAGTATGGAGTTGAC 58.124 34.615 4.25 0.00 42.10 3.18
1438 1471 6.215121 TGTGCAAGAAACAATTTCAGTATGG 58.785 36.000 4.25 0.00 42.10 2.74
1439 1472 6.129009 GCTGTGCAAGAAACAATTTCAGTATG 60.129 38.462 4.25 0.00 42.10 2.39
1440 1473 5.922544 GCTGTGCAAGAAACAATTTCAGTAT 59.077 36.000 4.25 0.00 42.10 2.12
1497 1530 5.631481 GCATCAGGTGGGAAGAAACCTATAA 60.631 44.000 0.00 0.00 45.21 0.98
1502 1535 1.177401 GCATCAGGTGGGAAGAAACC 58.823 55.000 0.00 0.00 36.66 3.27
1513 1546 5.150715 TGATCAACCTAGATAGCATCAGGT 58.849 41.667 0.00 11.05 40.27 4.00
1561 1594 1.680249 GGAAGATCCTGCTGGGTGAAC 60.680 57.143 10.07 0.00 36.25 3.18
1680 1713 4.906618 ACGGAAGTAATGCCATATAAGGG 58.093 43.478 0.00 0.00 46.88 3.95
1753 1786 6.566197 AGCTTGAAGACAAATTAGTCCAAG 57.434 37.500 0.00 0.00 39.34 3.61
1758 1791 7.771183 TGTTTGAAGCTTGAAGACAAATTAGT 58.229 30.769 2.10 0.00 35.49 2.24
1946 1979 6.858478 TCGAAATCGAGCTGTCTTTGATATAG 59.142 38.462 0.58 0.00 44.22 1.31
1974 2007 5.382618 ACCTTCACTTTCTGAATGCATTC 57.617 39.130 28.83 28.83 38.26 2.67
1979 2012 7.736447 AGAAACTACCTTCACTTTCTGAATG 57.264 36.000 2.09 2.09 38.26 2.67
2047 2080 9.593134 ACTGAACATCAACTTCTGATTAGATAC 57.407 33.333 0.00 0.00 42.46 2.24
2049 2082 9.512588 AAACTGAACATCAACTTCTGATTAGAT 57.487 29.630 0.00 0.00 42.46 1.98
2050 2083 8.777413 CAAACTGAACATCAACTTCTGATTAGA 58.223 33.333 0.00 0.00 42.46 2.10
2054 2087 5.242393 CCCAAACTGAACATCAACTTCTGAT 59.758 40.000 0.00 0.00 46.25 2.90
2055 2088 4.580167 CCCAAACTGAACATCAACTTCTGA 59.420 41.667 0.00 0.00 38.81 3.27
2056 2089 4.580167 TCCCAAACTGAACATCAACTTCTG 59.420 41.667 0.00 0.00 0.00 3.02
2057 2090 4.580580 GTCCCAAACTGAACATCAACTTCT 59.419 41.667 0.00 0.00 0.00 2.85
2058 2091 4.580580 AGTCCCAAACTGAACATCAACTTC 59.419 41.667 0.00 0.00 36.65 3.01
2059 2092 4.536765 AGTCCCAAACTGAACATCAACTT 58.463 39.130 0.00 0.00 36.65 2.66
2060 2093 4.170468 AGTCCCAAACTGAACATCAACT 57.830 40.909 0.00 0.00 36.65 3.16
2082 2138 7.875041 AGTAATATGTGCCTGATGTAATCTCAC 59.125 37.037 0.00 0.00 45.81 3.51
2147 2204 8.682016 CAACGTTTTTCTGAAGAATGAACATAC 58.318 33.333 16.89 0.00 33.67 2.39
2154 2211 6.719365 AGTCTCAACGTTTTTCTGAAGAATG 58.281 36.000 0.00 10.37 33.54 2.67
2169 2226 9.011407 GTAAATATACACTCTCAAGTCTCAACG 57.989 37.037 0.00 0.00 31.71 4.10
2170 2227 9.856488 TGTAAATATACACTCTCAAGTCTCAAC 57.144 33.333 0.00 0.00 37.11 3.18
2200 2257 4.032960 TGGAGCTTTCATGTGGTATTGT 57.967 40.909 0.00 0.00 0.00 2.71
2276 2333 8.717821 TCTGAGAAGTAAATTTAACCAATCGTG 58.282 33.333 0.00 0.00 0.00 4.35
2281 2338 9.847224 AAGACTCTGAGAAGTAAATTTAACCAA 57.153 29.630 12.44 0.00 0.00 3.67
2284 2341 9.490379 TCCAAGACTCTGAGAAGTAAATTTAAC 57.510 33.333 12.44 0.00 0.00 2.01
2289 2346 8.980481 TTTTTCCAAGACTCTGAGAAGTAAAT 57.020 30.769 12.44 0.00 0.00 1.40
2292 2349 7.361457 TCTTTTTCCAAGACTCTGAGAAGTA 57.639 36.000 12.44 0.00 0.00 2.24
2293 2350 6.240549 TCTTTTTCCAAGACTCTGAGAAGT 57.759 37.500 12.44 0.00 0.00 3.01
2294 2351 7.066284 TGTTTCTTTTTCCAAGACTCTGAGAAG 59.934 37.037 12.44 1.39 0.00 2.85
2295 2352 6.884295 TGTTTCTTTTTCCAAGACTCTGAGAA 59.116 34.615 12.44 0.00 0.00 2.87
2296 2353 6.316390 GTGTTTCTTTTTCCAAGACTCTGAGA 59.684 38.462 12.44 0.00 0.00 3.27
2297 2354 6.317391 AGTGTTTCTTTTTCCAAGACTCTGAG 59.683 38.462 2.45 2.45 0.00 3.35
2302 2359 7.013369 GGACATAGTGTTTCTTTTTCCAAGACT 59.987 37.037 0.00 0.00 0.00 3.24
2308 2365 6.937465 AGAGAGGACATAGTGTTTCTTTTTCC 59.063 38.462 0.00 0.00 28.96 3.13
2312 2369 5.703130 GCAAGAGAGGACATAGTGTTTCTTT 59.297 40.000 0.00 0.00 28.96 2.52
2339 2396 7.725251 TCAGCATTAACAGATTCCTTTTGTTT 58.275 30.769 0.00 0.00 36.52 2.83
2390 2447 0.657840 GCCCATAGCGTAGTTGCTTG 59.342 55.000 0.00 0.00 44.46 4.01
2403 2460 5.307976 AGCTATCAGTGTATTTCAGCCCATA 59.692 40.000 0.00 0.00 0.00 2.74
2411 2468 5.757320 ACTGCATGAGCTATCAGTGTATTTC 59.243 40.000 0.00 0.00 39.29 2.17
2412 2469 5.678583 ACTGCATGAGCTATCAGTGTATTT 58.321 37.500 0.00 0.00 39.29 1.40
2438 2495 1.207329 AGGCCGTCGCTCTTTTCTATT 59.793 47.619 0.00 0.00 34.44 1.73
2446 2503 2.185310 AATTGGAAGGCCGTCGCTCT 62.185 55.000 12.79 0.00 36.79 4.09
2451 2508 0.526211 GGAACAATTGGAAGGCCGTC 59.474 55.000 10.61 10.61 36.79 4.79
2525 2582 4.505566 CGATCAACCACTATTCCCATGGAT 60.506 45.833 15.22 1.57 36.94 3.41
2535 2592 9.184523 TGAAATATTTTTCCGATCAACCACTAT 57.815 29.630 1.43 0.00 40.49 2.12
2537 2594 7.461182 TGAAATATTTTTCCGATCAACCACT 57.539 32.000 1.43 0.00 40.49 4.00
2538 2595 7.222611 CCATGAAATATTTTTCCGATCAACCAC 59.777 37.037 1.43 0.00 40.49 4.16
2547 2604 7.761409 TCACTTCTCCATGAAATATTTTTCCG 58.239 34.615 1.43 0.00 40.49 4.30
2555 2612 4.653801 TCCCGATCACTTCTCCATGAAATA 59.346 41.667 0.00 0.00 33.79 1.40
2579 2636 4.392940 AGACATCCTTGCCATACTTATGC 58.607 43.478 0.00 0.00 32.40 3.14
2627 2684 5.301805 GTCAAGTTTTCCTCCTCCAATCAAA 59.698 40.000 0.00 0.00 0.00 2.69
2676 2733 5.865085 AGCAACCAACAACACTCTAGATAA 58.135 37.500 0.00 0.00 0.00 1.75
2685 2742 1.490621 GCATGAGCAACCAACAACAC 58.509 50.000 0.00 0.00 41.58 3.32
2744 2801 9.366216 GTTGTTCAGTTAAAATGGAAGAAAACT 57.634 29.630 0.00 0.00 0.00 2.66
2753 2810 5.432885 AGGACGTTGTTCAGTTAAAATGG 57.567 39.130 0.00 0.00 0.00 3.16
2754 2811 7.274686 ACAAAAGGACGTTGTTCAGTTAAAATG 59.725 33.333 0.00 0.00 35.70 2.32
2757 2814 6.072618 TGACAAAAGGACGTTGTTCAGTTAAA 60.073 34.615 0.00 0.00 39.29 1.52
2770 2827 2.143122 TGCTTAGCTGACAAAAGGACG 58.857 47.619 5.60 0.00 0.00 4.79
2780 2841 4.408270 AGATCTTCCTGATTGCTTAGCTGA 59.592 41.667 5.60 0.00 35.14 4.26
2861 2922 6.018589 TCATCAGCTTGTATATCCTCTTCG 57.981 41.667 0.00 0.00 0.00 3.79
2887 2948 6.581171 TGTTTGTTATGTGCATGGTAATGA 57.419 33.333 0.00 0.00 35.67 2.57
2927 2988 3.493176 CCAGGCTTTTCTTTCCACCAAAG 60.493 47.826 0.00 0.00 42.80 2.77
3005 3066 3.582647 TGCTCAAGGAACCAGTGATAAGA 59.417 43.478 0.00 0.00 0.00 2.10
3022 3083 5.240891 AGAGAATCGACAAGAAAATGCTCA 58.759 37.500 0.00 0.00 42.67 4.26
3038 3099 5.007823 CACATGGATCAGAGCAAAGAGAATC 59.992 44.000 0.00 0.00 0.00 2.52
3096 3157 6.540189 AGAAGATGGTCACAAAGGATAATTCG 59.460 38.462 0.00 0.00 0.00 3.34
3106 3169 5.763204 GGACAAAGTAGAAGATGGTCACAAA 59.237 40.000 0.00 0.00 0.00 2.83
3126 3189 6.073981 ACATGCTCTAAGAGAGATATGGACA 58.926 40.000 14.83 0.00 45.07 4.02
3190 3257 7.611213 AATTACAGTGTTAGGCTGTTATGAC 57.389 36.000 0.00 0.00 43.87 3.06
3212 3281 4.277423 AGGTTTTGTTAACTGCTGCGTAAT 59.723 37.500 7.22 0.00 0.00 1.89
3225 3294 5.733620 ATCGTCACTAGGAGGTTTTGTTA 57.266 39.130 0.00 0.00 33.18 2.41
3243 3312 5.369685 TGTACATGCAATTGAACAATCGT 57.630 34.783 10.34 1.29 0.00 3.73
3244 3313 6.527372 TGAATGTACATGCAATTGAACAATCG 59.473 34.615 14.51 0.00 0.00 3.34
3252 3321 5.171874 GCGTATGTGAATGTACATGCAATTG 59.828 40.000 18.45 8.02 41.78 2.32
3264 3333 3.926527 AGTGTGTACAGCGTATGTGAATG 59.073 43.478 0.00 0.00 43.80 2.67
3278 3347 5.049680 CCAATCCACAAACTACAGTGTGTAC 60.050 44.000 5.88 0.00 44.20 2.90
3281 3350 3.304659 GCCAATCCACAAACTACAGTGTG 60.305 47.826 5.88 0.00 43.88 3.82
3284 3353 3.508845 AGCCAATCCACAAACTACAGT 57.491 42.857 0.00 0.00 0.00 3.55
3285 3354 4.832248 TCTAGCCAATCCACAAACTACAG 58.168 43.478 0.00 0.00 0.00 2.74
3433 3502 2.100197 CAGGGAGGTTACTGTCGATCA 58.900 52.381 0.00 0.00 0.00 2.92
3442 3513 2.570302 TCTGGCTTTACAGGGAGGTTAC 59.430 50.000 0.00 0.00 38.98 2.50
3445 3516 1.630878 CTTCTGGCTTTACAGGGAGGT 59.369 52.381 0.00 0.00 38.98 3.85
3448 3519 2.038863 TCCTTCTGGCTTTACAGGGA 57.961 50.000 0.00 0.00 38.98 4.20
3471 3543 7.558444 TGTTGTTACAGGTAAAAGAAACAGGAT 59.442 33.333 0.00 0.00 0.00 3.24
3501 3573 5.675538 AGTACTTGGAGCATTATCTCAACC 58.324 41.667 0.00 0.00 34.84 3.77
3514 3586 0.827368 GGCAGAGGGAGTACTTGGAG 59.173 60.000 0.00 0.00 0.00 3.86
3544 3619 2.045926 GGCCAGGGTGCTGTACTG 60.046 66.667 0.00 0.00 0.00 2.74
3547 3622 2.203922 TCTGGCCAGGGTGCTGTA 60.204 61.111 32.23 7.74 0.00 2.74
3549 3624 4.421515 CCTCTGGCCAGGGTGCTG 62.422 72.222 30.85 12.16 0.00 4.41
3642 3723 1.079819 ATGCTCCGTCCAAGTGTCG 60.080 57.895 0.00 0.00 0.00 4.35
3681 3762 7.056006 TCATGCTCCAAGTATGTGTATGAAAT 58.944 34.615 5.19 0.00 39.05 2.17
3709 3790 0.108472 TCCTCAGCAGTCATCAAGCG 60.108 55.000 0.00 0.00 0.00 4.68
3733 3814 1.029947 GGTGAACCATGGCCTTACCG 61.030 60.000 13.04 0.00 37.30 4.02
3757 3862 0.821301 TGGCCTGAATTGCACGAACA 60.821 50.000 3.32 0.00 0.00 3.18
3758 3863 0.109597 CTGGCCTGAATTGCACGAAC 60.110 55.000 3.32 0.00 0.00 3.95
3759 3864 1.865788 GCTGGCCTGAATTGCACGAA 61.866 55.000 14.77 0.00 0.00 3.85
3760 3865 2.334946 GCTGGCCTGAATTGCACGA 61.335 57.895 14.77 0.00 0.00 4.35
3761 3866 2.180017 GCTGGCCTGAATTGCACG 59.820 61.111 14.77 0.00 0.00 5.34
3762 3867 2.180017 CGCTGGCCTGAATTGCAC 59.820 61.111 14.77 0.00 0.00 4.57
3763 3868 3.751246 GCGCTGGCCTGAATTGCA 61.751 61.111 14.77 0.00 0.00 4.08
3764 3869 3.407046 GAGCGCTGGCCTGAATTGC 62.407 63.158 18.48 10.70 41.24 3.56
3765 3870 1.748122 AGAGCGCTGGCCTGAATTG 60.748 57.895 18.48 0.65 41.24 2.32
3766 3871 1.748122 CAGAGCGCTGGCCTGAATT 60.748 57.895 18.48 0.00 38.78 2.17
3767 3872 2.124819 CAGAGCGCTGGCCTGAAT 60.125 61.111 18.48 0.00 38.78 2.57
3768 3873 3.313524 TCAGAGCGCTGGCCTGAA 61.314 61.111 18.48 3.68 40.86 3.02
3769 3874 4.074526 GTCAGAGCGCTGGCCTGA 62.075 66.667 18.48 19.46 40.90 3.86
3791 3896 1.137282 GGCTCTAGTTTTCCTCGAGGG 59.863 57.143 30.80 13.20 34.39 4.30
3820 3925 6.590292 GGCGCTTTACATACACATATATCAGT 59.410 38.462 7.64 0.00 0.00 3.41
3832 3948 3.188460 CCATGGTATGGCGCTTTACATAC 59.812 47.826 19.96 19.96 44.70 2.39
3834 3950 2.229792 CCATGGTATGGCGCTTTACAT 58.770 47.619 7.64 4.54 44.70 2.29
3877 3993 9.716507 GCACGAAACTGAAACATTATATGTATT 57.283 29.630 0.00 0.00 44.07 1.89
3901 4017 2.463620 GCATGCTTCGACATCGGCA 61.464 57.895 11.37 7.51 39.88 5.69
3902 4018 1.709147 AAGCATGCTTCGACATCGGC 61.709 55.000 27.21 0.00 40.29 5.54
3929 4058 5.235516 GTCTGAGTACCGGATTTTTCAAGA 58.764 41.667 9.46 0.00 31.82 3.02
3933 4062 3.611549 GTCGTCTGAGTACCGGATTTTTC 59.388 47.826 9.46 0.00 31.82 2.29
3945 4074 1.179814 GGTGGGACTGTCGTCTGAGT 61.180 60.000 1.07 0.00 40.10 3.41
3965 4355 0.532573 GCTCGATGGGAGTCTGTTCA 59.467 55.000 0.00 0.00 45.03 3.18
3968 4358 3.069980 GCGCTCGATGGGAGTCTGT 62.070 63.158 0.00 0.00 45.03 3.41
3973 4371 2.279120 GTCTGCGCTCGATGGGAG 60.279 66.667 9.73 0.00 46.06 4.30
3974 4372 4.193334 CGTCTGCGCTCGATGGGA 62.193 66.667 9.73 0.00 0.00 4.37
3975 4373 4.498520 ACGTCTGCGCTCGATGGG 62.499 66.667 21.71 9.58 42.83 4.00
3977 4375 2.202479 TCACGTCTGCGCTCGATG 60.202 61.111 21.71 18.35 42.83 3.84
3979 4377 3.656045 TGTCACGTCTGCGCTCGA 61.656 61.111 21.71 10.82 42.83 4.04
3981 4379 2.049985 AGTGTCACGTCTGCGCTC 60.050 61.111 9.73 0.00 42.83 5.03
3989 4387 0.818445 AGAGTGGTCGAGTGTCACGT 60.818 55.000 0.00 0.00 36.60 4.49
3991 4389 0.669077 ACAGAGTGGTCGAGTGTCAC 59.331 55.000 0.00 0.00 0.00 3.67
3995 4393 1.469308 GTAGGACAGAGTGGTCGAGTG 59.531 57.143 0.00 0.00 38.70 3.51
3996 4394 1.351683 AGTAGGACAGAGTGGTCGAGT 59.648 52.381 0.00 0.00 38.70 4.18
3997 4395 2.011222 GAGTAGGACAGAGTGGTCGAG 58.989 57.143 0.00 0.00 38.70 4.04
4003 4401 0.727970 CGACCGAGTAGGACAGAGTG 59.272 60.000 0.00 0.00 45.00 3.51
4007 4405 1.136984 GCACGACCGAGTAGGACAG 59.863 63.158 0.00 0.00 45.00 3.51
4010 4408 2.359107 ACGCACGACCGAGTAGGA 60.359 61.111 0.00 0.00 45.00 2.94
4012 4410 2.276493 CGACGCACGACCGAGTAG 60.276 66.667 0.00 0.00 45.77 2.57
4041 4439 1.274728 GTGTGAGTGATGTGAGCCTCT 59.725 52.381 0.00 0.00 0.00 3.69
4056 4454 0.753867 TTTAGGGTGTCAGCGTGTGA 59.246 50.000 7.47 0.00 0.00 3.58
4057 4455 1.148310 CTTTAGGGTGTCAGCGTGTG 58.852 55.000 7.47 0.00 0.00 3.82
4058 4456 0.602905 GCTTTAGGGTGTCAGCGTGT 60.603 55.000 7.47 0.00 0.00 4.49
4059 4457 0.320771 AGCTTTAGGGTGTCAGCGTG 60.321 55.000 7.47 0.00 37.35 5.34
4060 4458 0.320771 CAGCTTTAGGGTGTCAGCGT 60.321 55.000 2.45 2.45 38.49 5.07
4062 4460 1.308783 GGCAGCTTTAGGGTGTCAGC 61.309 60.000 0.00 0.00 46.07 4.26
4063 4461 2.859992 GGCAGCTTTAGGGTGTCAG 58.140 57.895 0.00 0.00 46.07 3.51
4065 4463 0.393132 GAGGGCAGCTTTAGGGTGTC 60.393 60.000 0.00 0.00 46.08 3.67
4066 4464 0.842467 AGAGGGCAGCTTTAGGGTGT 60.842 55.000 0.00 0.00 44.46 4.16
4067 4465 1.204146 TAGAGGGCAGCTTTAGGGTG 58.796 55.000 0.00 0.00 45.31 4.61
4068 4466 1.771255 CATAGAGGGCAGCTTTAGGGT 59.229 52.381 0.00 0.00 0.00 4.34
4069 4467 2.050144 TCATAGAGGGCAGCTTTAGGG 58.950 52.381 0.00 0.00 0.00 3.53
4084 4607 7.795047 AGGGGAAATTAAAAGGCAAATCATAG 58.205 34.615 0.00 0.00 0.00 2.23
4127 4684 6.769822 AGACAAAATGATATGATGGTGGAGAC 59.230 38.462 0.00 0.00 0.00 3.36
4142 4699 1.623081 GCGACGCCGAGACAAAATGA 61.623 55.000 9.14 0.00 38.22 2.57
4143 4700 1.225745 GCGACGCCGAGACAAAATG 60.226 57.895 9.14 0.00 38.22 2.32
4144 4701 2.726691 CGCGACGCCGAGACAAAAT 61.727 57.895 15.34 0.00 37.82 1.82
4145 4702 3.399770 CGCGACGCCGAGACAAAA 61.400 61.111 15.34 0.00 37.82 2.44
4146 4703 4.634133 ACGCGACGCCGAGACAAA 62.634 61.111 15.93 0.00 38.94 2.83
4153 4752 3.017314 GTAGATGACGCGACGCCG 61.017 66.667 15.93 11.99 39.16 6.46
4154 4753 3.017314 CGTAGATGACGCGACGCC 61.017 66.667 15.93 1.98 46.27 5.68
4176 4775 4.085733 AGACAGATGGCCAGCTATAGTAG 58.914 47.826 25.79 12.94 0.00 2.57
4181 4780 1.798626 TGAGACAGATGGCCAGCTAT 58.201 50.000 25.79 14.22 0.00 2.97
4190 4789 0.179100 ACGGGCGAATGAGACAGATG 60.179 55.000 0.00 0.00 0.00 2.90
4191 4790 0.537188 AACGGGCGAATGAGACAGAT 59.463 50.000 0.00 0.00 0.00 2.90
4192 4791 0.320374 AAACGGGCGAATGAGACAGA 59.680 50.000 0.00 0.00 0.00 3.41
4194 4793 2.028839 TCTTAAACGGGCGAATGAGACA 60.029 45.455 0.00 0.00 0.00 3.41
4199 4798 1.396996 CCAGTCTTAAACGGGCGAATG 59.603 52.381 0.00 0.00 36.38 2.67
4200 4799 1.276989 TCCAGTCTTAAACGGGCGAAT 59.723 47.619 0.00 0.00 42.45 3.34
4201 4800 0.680618 TCCAGTCTTAAACGGGCGAA 59.319 50.000 0.00 0.00 42.45 4.70
4202 4801 0.899720 ATCCAGTCTTAAACGGGCGA 59.100 50.000 0.00 0.00 42.45 5.54
4203 4802 2.199236 GTATCCAGTCTTAAACGGGCG 58.801 52.381 0.00 0.00 42.45 6.13
4204 4803 3.255969 TGTATCCAGTCTTAAACGGGC 57.744 47.619 0.00 0.00 42.45 6.13
4205 4804 3.560068 GCATGTATCCAGTCTTAAACGGG 59.440 47.826 0.00 0.00 43.94 5.28
4206 4805 4.188462 TGCATGTATCCAGTCTTAAACGG 58.812 43.478 0.00 0.00 0.00 4.44
4207 4806 5.220662 CCTTGCATGTATCCAGTCTTAAACG 60.221 44.000 0.00 0.00 0.00 3.60
4208 4807 5.880332 TCCTTGCATGTATCCAGTCTTAAAC 59.120 40.000 0.00 0.00 0.00 2.01
4209 4808 6.061022 TCCTTGCATGTATCCAGTCTTAAA 57.939 37.500 0.00 0.00 0.00 1.52
4210 4809 5.692115 TCCTTGCATGTATCCAGTCTTAA 57.308 39.130 0.00 0.00 0.00 1.85
4211 4810 5.692115 TTCCTTGCATGTATCCAGTCTTA 57.308 39.130 0.00 0.00 0.00 2.10
4212 4811 4.574674 TTCCTTGCATGTATCCAGTCTT 57.425 40.909 0.00 0.00 0.00 3.01
4213 4812 4.785346 ATTCCTTGCATGTATCCAGTCT 57.215 40.909 0.00 0.00 0.00 3.24
4214 4813 7.880195 AGTATAATTCCTTGCATGTATCCAGTC 59.120 37.037 0.00 0.00 0.00 3.51
4215 4814 7.749666 AGTATAATTCCTTGCATGTATCCAGT 58.250 34.615 0.00 0.00 0.00 4.00
4216 4815 8.627208 AAGTATAATTCCTTGCATGTATCCAG 57.373 34.615 0.00 0.00 0.00 3.86
4217 4816 9.502091 GTAAGTATAATTCCTTGCATGTATCCA 57.498 33.333 0.00 0.00 0.00 3.41
4218 4817 9.726438 AGTAAGTATAATTCCTTGCATGTATCC 57.274 33.333 0.00 0.00 0.00 2.59
4224 4823 9.424319 CGATACAGTAAGTATAATTCCTTGCAT 57.576 33.333 0.00 0.00 43.39 3.96
4225 4824 7.384115 GCGATACAGTAAGTATAATTCCTTGCA 59.616 37.037 0.00 0.00 43.39 4.08
4226 4825 7.148623 GGCGATACAGTAAGTATAATTCCTTGC 60.149 40.741 0.00 0.00 43.39 4.01
4227 4826 7.061905 CGGCGATACAGTAAGTATAATTCCTTG 59.938 40.741 0.00 0.00 43.39 3.61
4240 4839 0.527600 CTGCAGCGGCGATACAGTAA 60.528 55.000 16.75 0.00 45.35 2.24
4247 4846 0.033920 TAATCATCTGCAGCGGCGAT 59.966 50.000 12.98 0.00 45.35 4.58
4256 4855 1.607628 CAGCCCTGCTTAATCATCTGC 59.392 52.381 0.00 0.00 36.40 4.26
4257 4856 2.617308 CACAGCCCTGCTTAATCATCTG 59.383 50.000 0.00 0.00 36.40 2.90
4266 4865 2.848858 CGCAAACACAGCCCTGCTT 61.849 57.895 0.00 0.00 36.40 3.91
4268 4867 3.542629 GACGCAAACACAGCCCTGC 62.543 63.158 0.00 0.00 0.00 4.85
4269 4868 2.639286 GACGCAAACACAGCCCTG 59.361 61.111 0.00 0.00 0.00 4.45
4270 4869 2.972505 CGACGCAAACACAGCCCT 60.973 61.111 0.00 0.00 0.00 5.19
4271 4870 4.683334 GCGACGCAAACACAGCCC 62.683 66.667 16.42 0.00 0.00 5.19
4273 4872 4.293626 ACGCGACGCAAACACAGC 62.294 61.111 21.35 0.00 0.00 4.40
4274 4873 2.423517 CACGCGACGCAAACACAG 60.424 61.111 21.35 3.75 0.00 3.66
4275 4874 4.583254 GCACGCGACGCAAACACA 62.583 61.111 21.35 0.00 0.00 3.72
4286 4893 3.981159 CTGCTAGCATCGCACGCG 61.981 66.667 19.72 3.53 41.35 6.01
4330 4937 4.476410 TACGACGCAGAGCCGCAG 62.476 66.667 0.00 0.00 0.00 5.18
4331 4938 4.476410 CTACGACGCAGAGCCGCA 62.476 66.667 0.00 0.00 0.00 5.69
4333 4940 3.456431 CTCCTACGACGCAGAGCCG 62.456 68.421 0.00 0.00 0.00 5.52
4334 4941 2.409651 CTCCTACGACGCAGAGCC 59.590 66.667 0.00 0.00 0.00 4.70
4336 4943 0.745128 ACTCCTCCTACGACGCAGAG 60.745 60.000 0.00 0.00 0.00 3.35
4337 4944 0.538584 TACTCCTCCTACGACGCAGA 59.461 55.000 0.00 0.00 0.00 4.26
4338 4945 0.656785 GTACTCCTCCTACGACGCAG 59.343 60.000 0.00 0.00 0.00 5.18
4339 4946 1.086067 CGTACTCCTCCTACGACGCA 61.086 60.000 0.00 0.00 39.50 5.24
4340 4947 1.086634 ACGTACTCCTCCTACGACGC 61.087 60.000 5.06 0.00 39.50 5.19
4341 4948 0.926846 GACGTACTCCTCCTACGACG 59.073 60.000 5.06 0.00 39.50 5.12
4343 4950 1.552337 ACAGACGTACTCCTCCTACGA 59.448 52.381 5.06 0.00 39.50 3.43
4344 4951 2.021355 ACAGACGTACTCCTCCTACG 57.979 55.000 0.00 0.00 42.22 3.51
4346 4953 2.159043 CGGTACAGACGTACTCCTCCTA 60.159 54.545 0.00 0.00 46.15 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.