Multiple sequence alignment - TraesCS5B01G423500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G423500 | chr5B | 100.000 | 2372 | 0 | 0 | 1 | 2372 | 599754575 | 599756946 | 0.000000e+00 | 4344.0 |
1 | TraesCS5B01G423500 | chr5B | 97.550 | 653 | 16 | 0 | 1 | 653 | 127808880 | 127809532 | 0.000000e+00 | 1118.0 |
2 | TraesCS5B01G423500 | chr5B | 93.913 | 230 | 12 | 1 | 2143 | 2372 | 599704731 | 599704958 | 1.750000e-91 | 346.0 |
3 | TraesCS5B01G423500 | chr5B | 94.853 | 136 | 7 | 0 | 2237 | 2372 | 599846076 | 599846211 | 1.850000e-51 | 213.0 |
4 | TraesCS5B01G423500 | chr5B | 92.517 | 147 | 10 | 1 | 2096 | 2242 | 599844933 | 599845078 | 2.390000e-50 | 209.0 |
5 | TraesCS5B01G423500 | chr5B | 86.239 | 109 | 4 | 4 | 2259 | 2367 | 599693966 | 599694063 | 8.960000e-20 | 108.0 |
6 | TraesCS5B01G423500 | chr5B | 98.039 | 51 | 1 | 0 | 2096 | 2146 | 599703885 | 599703935 | 3.250000e-14 | 89.8 |
7 | TraesCS5B01G423500 | chr3A | 98.369 | 1410 | 23 | 0 | 664 | 2073 | 66004273 | 66002864 | 0.000000e+00 | 2477.0 |
8 | TraesCS5B01G423500 | chr3A | 97.542 | 651 | 16 | 0 | 1 | 651 | 66004686 | 66004036 | 0.000000e+00 | 1114.0 |
9 | TraesCS5B01G423500 | chr3A | 97.243 | 653 | 18 | 0 | 1 | 653 | 695640834 | 695641486 | 0.000000e+00 | 1107.0 |
10 | TraesCS5B01G423500 | chr5D | 98.298 | 1410 | 24 | 0 | 664 | 2073 | 503246132 | 503247541 | 0.000000e+00 | 2471.0 |
11 | TraesCS5B01G423500 | chr5D | 98.298 | 1410 | 24 | 0 | 664 | 2073 | 503263916 | 503262507 | 0.000000e+00 | 2471.0 |
12 | TraesCS5B01G423500 | chr2D | 98.298 | 1410 | 24 | 0 | 664 | 2073 | 272811386 | 272809977 | 0.000000e+00 | 2471.0 |
13 | TraesCS5B01G423500 | chr2D | 97.943 | 1410 | 29 | 0 | 664 | 2073 | 591985469 | 591986878 | 0.000000e+00 | 2444.0 |
14 | TraesCS5B01G423500 | chr2D | 97.550 | 653 | 16 | 0 | 1 | 653 | 591985056 | 591985708 | 0.000000e+00 | 1118.0 |
15 | TraesCS5B01G423500 | chr6D | 98.227 | 1410 | 25 | 0 | 664 | 2073 | 389244962 | 389243553 | 0.000000e+00 | 2466.0 |
16 | TraesCS5B01G423500 | chr6D | 97.397 | 653 | 17 | 0 | 1 | 653 | 389245375 | 389244723 | 0.000000e+00 | 1112.0 |
17 | TraesCS5B01G423500 | chr2A | 98.156 | 1410 | 26 | 0 | 664 | 2073 | 726905595 | 726904186 | 0.000000e+00 | 2460.0 |
18 | TraesCS5B01G423500 | chr3D | 98.084 | 1409 | 27 | 0 | 664 | 2072 | 589262666 | 589261258 | 0.000000e+00 | 2453.0 |
19 | TraesCS5B01G423500 | chr3D | 97.397 | 653 | 17 | 0 | 1 | 653 | 589263079 | 589262427 | 0.000000e+00 | 1112.0 |
20 | TraesCS5B01G423500 | chrUn | 97.872 | 1410 | 30 | 0 | 664 | 2073 | 365939956 | 365941365 | 0.000000e+00 | 2438.0 |
21 | TraesCS5B01G423500 | chr7B | 97.550 | 653 | 16 | 0 | 1 | 653 | 662726851 | 662727503 | 0.000000e+00 | 1118.0 |
22 | TraesCS5B01G423500 | chr1D | 97.397 | 653 | 17 | 0 | 1 | 653 | 459904270 | 459903618 | 0.000000e+00 | 1112.0 |
23 | TraesCS5B01G423500 | chr1D | 97.090 | 653 | 19 | 0 | 1 | 653 | 254526054 | 254526706 | 0.000000e+00 | 1101.0 |
24 | TraesCS5B01G423500 | chr1B | 97.243 | 653 | 18 | 0 | 1 | 653 | 638729085 | 638729737 | 0.000000e+00 | 1107.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G423500 | chr5B | 599754575 | 599756946 | 2371 | False | 4344.0 | 4344 | 100.0000 | 1 | 2372 | 1 | chr5B.!!$F3 | 2371 |
1 | TraesCS5B01G423500 | chr5B | 127808880 | 127809532 | 652 | False | 1118.0 | 1118 | 97.5500 | 1 | 653 | 1 | chr5B.!!$F1 | 652 |
2 | TraesCS5B01G423500 | chr5B | 599703885 | 599704958 | 1073 | False | 217.9 | 346 | 95.9760 | 2096 | 2372 | 2 | chr5B.!!$F4 | 276 |
3 | TraesCS5B01G423500 | chr5B | 599844933 | 599846211 | 1278 | False | 211.0 | 213 | 93.6850 | 2096 | 2372 | 2 | chr5B.!!$F5 | 276 |
4 | TraesCS5B01G423500 | chr3A | 66002864 | 66004686 | 1822 | True | 1795.5 | 2477 | 97.9555 | 1 | 2073 | 2 | chr3A.!!$R1 | 2072 |
5 | TraesCS5B01G423500 | chr3A | 695640834 | 695641486 | 652 | False | 1107.0 | 1107 | 97.2430 | 1 | 653 | 1 | chr3A.!!$F1 | 652 |
6 | TraesCS5B01G423500 | chr5D | 503246132 | 503247541 | 1409 | False | 2471.0 | 2471 | 98.2980 | 664 | 2073 | 1 | chr5D.!!$F1 | 1409 |
7 | TraesCS5B01G423500 | chr5D | 503262507 | 503263916 | 1409 | True | 2471.0 | 2471 | 98.2980 | 664 | 2073 | 1 | chr5D.!!$R1 | 1409 |
8 | TraesCS5B01G423500 | chr2D | 272809977 | 272811386 | 1409 | True | 2471.0 | 2471 | 98.2980 | 664 | 2073 | 1 | chr2D.!!$R1 | 1409 |
9 | TraesCS5B01G423500 | chr2D | 591985056 | 591986878 | 1822 | False | 1781.0 | 2444 | 97.7465 | 1 | 2073 | 2 | chr2D.!!$F1 | 2072 |
10 | TraesCS5B01G423500 | chr6D | 389243553 | 389245375 | 1822 | True | 1789.0 | 2466 | 97.8120 | 1 | 2073 | 2 | chr6D.!!$R1 | 2072 |
11 | TraesCS5B01G423500 | chr2A | 726904186 | 726905595 | 1409 | True | 2460.0 | 2460 | 98.1560 | 664 | 2073 | 1 | chr2A.!!$R1 | 1409 |
12 | TraesCS5B01G423500 | chr3D | 589261258 | 589263079 | 1821 | True | 1782.5 | 2453 | 97.7405 | 1 | 2072 | 2 | chr3D.!!$R1 | 2071 |
13 | TraesCS5B01G423500 | chrUn | 365939956 | 365941365 | 1409 | False | 2438.0 | 2438 | 97.8720 | 664 | 2073 | 1 | chrUn.!!$F1 | 1409 |
14 | TraesCS5B01G423500 | chr7B | 662726851 | 662727503 | 652 | False | 1118.0 | 1118 | 97.5500 | 1 | 653 | 1 | chr7B.!!$F1 | 652 |
15 | TraesCS5B01G423500 | chr1D | 459903618 | 459904270 | 652 | True | 1112.0 | 1112 | 97.3970 | 1 | 653 | 1 | chr1D.!!$R1 | 652 |
16 | TraesCS5B01G423500 | chr1D | 254526054 | 254526706 | 652 | False | 1101.0 | 1101 | 97.0900 | 1 | 653 | 1 | chr1D.!!$F1 | 652 |
17 | TraesCS5B01G423500 | chr1B | 638729085 | 638729737 | 652 | False | 1107.0 | 1107 | 97.2430 | 1 | 653 | 1 | chr1B.!!$F1 | 652 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
595 | 596 | 0.038166 | TGGGATTCCAACTCAGCACC | 59.962 | 55.0 | 4.8 | 0.0 | 40.73 | 5.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2202 | 3002 | 0.896479 | TGCCAGAGTGTACGCCTACA | 60.896 | 55.0 | 1.98 | 0.26 | 0.0 | 2.74 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 70 | 3.316029 | TGAAACATGCCACTGAAAGACTG | 59.684 | 43.478 | 0.00 | 0.00 | 37.43 | 3.51 |
101 | 102 | 6.706295 | ACAAAAAGATGGGTTGTCAAAAAGA | 58.294 | 32.000 | 0.00 | 0.00 | 29.57 | 2.52 |
107 | 108 | 5.649831 | AGATGGGTTGTCAAAAAGATAGAGC | 59.350 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
119 | 120 | 4.477536 | AAGATAGAGCAGGTAGGATGGA | 57.522 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
252 | 253 | 5.234972 | TGCGAATAACTTGATGCACTATCTG | 59.765 | 40.000 | 0.00 | 0.00 | 36.71 | 2.90 |
388 | 389 | 2.981859 | GTCACGGACCAACCATAGAT | 57.018 | 50.000 | 0.00 | 0.00 | 38.90 | 1.98 |
533 | 534 | 2.529389 | AGCTCCCCGTTCCTGGTT | 60.529 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
534 | 535 | 2.046217 | GCTCCCCGTTCCTGGTTC | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
535 | 536 | 2.593956 | GCTCCCCGTTCCTGGTTCT | 61.594 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
536 | 537 | 1.597461 | CTCCCCGTTCCTGGTTCTC | 59.403 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
537 | 538 | 1.900545 | CTCCCCGTTCCTGGTTCTCC | 61.901 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
538 | 539 | 1.918800 | CCCCGTTCCTGGTTCTCCT | 60.919 | 63.158 | 0.00 | 0.00 | 34.23 | 3.69 |
539 | 540 | 1.296715 | CCCGTTCCTGGTTCTCCTG | 59.703 | 63.158 | 0.00 | 0.00 | 34.23 | 3.86 |
540 | 541 | 1.481056 | CCCGTTCCTGGTTCTCCTGT | 61.481 | 60.000 | 0.00 | 0.00 | 34.23 | 4.00 |
541 | 542 | 1.263356 | CCGTTCCTGGTTCTCCTGTA | 58.737 | 55.000 | 0.00 | 0.00 | 34.23 | 2.74 |
542 | 543 | 1.621814 | CCGTTCCTGGTTCTCCTGTAA | 59.378 | 52.381 | 0.00 | 0.00 | 34.23 | 2.41 |
543 | 544 | 2.612221 | CCGTTCCTGGTTCTCCTGTAAC | 60.612 | 54.545 | 0.00 | 0.00 | 31.64 | 2.50 |
544 | 545 | 2.299297 | CGTTCCTGGTTCTCCTGTAACT | 59.701 | 50.000 | 0.00 | 0.00 | 32.36 | 2.24 |
545 | 546 | 3.508793 | CGTTCCTGGTTCTCCTGTAACTA | 59.491 | 47.826 | 0.00 | 0.00 | 32.36 | 2.24 |
546 | 547 | 4.380655 | CGTTCCTGGTTCTCCTGTAACTAG | 60.381 | 50.000 | 0.00 | 0.00 | 35.77 | 2.57 |
547 | 548 | 4.669866 | TCCTGGTTCTCCTGTAACTAGA | 57.330 | 45.455 | 0.00 | 0.00 | 37.56 | 2.43 |
548 | 549 | 5.208294 | TCCTGGTTCTCCTGTAACTAGAT | 57.792 | 43.478 | 0.00 | 0.00 | 37.56 | 1.98 |
549 | 550 | 5.590818 | TCCTGGTTCTCCTGTAACTAGATT | 58.409 | 41.667 | 0.00 | 0.00 | 37.56 | 2.40 |
550 | 551 | 5.657302 | TCCTGGTTCTCCTGTAACTAGATTC | 59.343 | 44.000 | 0.00 | 0.00 | 37.56 | 2.52 |
551 | 552 | 5.163395 | CCTGGTTCTCCTGTAACTAGATTCC | 60.163 | 48.000 | 0.00 | 0.00 | 37.56 | 3.01 |
552 | 553 | 5.590818 | TGGTTCTCCTGTAACTAGATTCCT | 58.409 | 41.667 | 0.00 | 0.00 | 34.23 | 3.36 |
553 | 554 | 5.657302 | TGGTTCTCCTGTAACTAGATTCCTC | 59.343 | 44.000 | 0.00 | 0.00 | 34.23 | 3.71 |
554 | 555 | 5.657302 | GGTTCTCCTGTAACTAGATTCCTCA | 59.343 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
555 | 556 | 6.183360 | GGTTCTCCTGTAACTAGATTCCTCAG | 60.183 | 46.154 | 0.00 | 0.00 | 0.00 | 3.35 |
556 | 557 | 6.328782 | TCTCCTGTAACTAGATTCCTCAGA | 57.671 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
557 | 558 | 6.732487 | TCTCCTGTAACTAGATTCCTCAGAA | 58.268 | 40.000 | 0.00 | 0.00 | 36.15 | 3.02 |
558 | 559 | 6.603997 | TCTCCTGTAACTAGATTCCTCAGAAC | 59.396 | 42.308 | 0.00 | 0.00 | 33.97 | 3.01 |
559 | 560 | 5.657302 | TCCTGTAACTAGATTCCTCAGAACC | 59.343 | 44.000 | 0.00 | 0.00 | 33.97 | 3.62 |
560 | 561 | 5.422331 | CCTGTAACTAGATTCCTCAGAACCA | 59.578 | 44.000 | 0.00 | 0.00 | 33.97 | 3.67 |
561 | 562 | 6.282199 | TGTAACTAGATTCCTCAGAACCAC | 57.718 | 41.667 | 0.00 | 0.00 | 33.97 | 4.16 |
562 | 563 | 5.778241 | TGTAACTAGATTCCTCAGAACCACA | 59.222 | 40.000 | 0.00 | 0.00 | 33.97 | 4.17 |
563 | 564 | 5.825593 | AACTAGATTCCTCAGAACCACAA | 57.174 | 39.130 | 0.00 | 0.00 | 33.97 | 3.33 |
564 | 565 | 5.413309 | ACTAGATTCCTCAGAACCACAAG | 57.587 | 43.478 | 0.00 | 0.00 | 33.97 | 3.16 |
565 | 566 | 5.087323 | ACTAGATTCCTCAGAACCACAAGA | 58.913 | 41.667 | 0.00 | 0.00 | 33.97 | 3.02 |
566 | 567 | 4.982241 | AGATTCCTCAGAACCACAAGAA | 57.018 | 40.909 | 0.00 | 0.00 | 33.97 | 2.52 |
567 | 568 | 5.511386 | AGATTCCTCAGAACCACAAGAAT | 57.489 | 39.130 | 0.00 | 0.00 | 33.97 | 2.40 |
568 | 569 | 5.495640 | AGATTCCTCAGAACCACAAGAATC | 58.504 | 41.667 | 0.00 | 0.00 | 38.79 | 2.52 |
569 | 570 | 3.703001 | TCCTCAGAACCACAAGAATCC | 57.297 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
570 | 571 | 3.251484 | TCCTCAGAACCACAAGAATCCT | 58.749 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
571 | 572 | 3.652869 | TCCTCAGAACCACAAGAATCCTT | 59.347 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
572 | 573 | 4.844085 | TCCTCAGAACCACAAGAATCCTTA | 59.156 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
573 | 574 | 5.046304 | TCCTCAGAACCACAAGAATCCTTAG | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
574 | 575 | 5.046304 | CCTCAGAACCACAAGAATCCTTAGA | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
575 | 576 | 6.433847 | TCAGAACCACAAGAATCCTTAGAA | 57.566 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
576 | 577 | 7.020827 | TCAGAACCACAAGAATCCTTAGAAT | 57.979 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
577 | 578 | 6.881065 | TCAGAACCACAAGAATCCTTAGAATG | 59.119 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
578 | 579 | 6.094603 | CAGAACCACAAGAATCCTTAGAATGG | 59.905 | 42.308 | 0.00 | 0.00 | 31.72 | 3.16 |
579 | 580 | 4.860022 | ACCACAAGAATCCTTAGAATGGG | 58.140 | 43.478 | 0.00 | 0.00 | 30.62 | 4.00 |
580 | 581 | 4.540099 | ACCACAAGAATCCTTAGAATGGGA | 59.460 | 41.667 | 0.00 | 0.00 | 35.96 | 4.37 |
581 | 582 | 5.194537 | ACCACAAGAATCCTTAGAATGGGAT | 59.805 | 40.000 | 0.00 | 0.00 | 43.40 | 3.85 |
588 | 589 | 6.347061 | AATCCTTAGAATGGGATTCCAACT | 57.653 | 37.500 | 0.00 | 2.30 | 45.84 | 3.16 |
589 | 590 | 6.368805 | AATCCTTAGAATGGGATTCCAACTC | 58.631 | 40.000 | 0.00 | 0.00 | 45.84 | 3.01 |
590 | 591 | 6.068853 | AATCCTTAGAATGGGATTCCAACTCA | 60.069 | 38.462 | 0.00 | 0.00 | 45.84 | 3.41 |
591 | 592 | 7.857018 | AATCCTTAGAATGGGATTCCAACTCAG | 60.857 | 40.741 | 0.00 | 0.94 | 45.84 | 3.35 |
594 | 595 | 3.650647 | TGGGATTCCAACTCAGCAC | 57.349 | 52.632 | 4.80 | 0.00 | 40.73 | 4.40 |
595 | 596 | 0.038166 | TGGGATTCCAACTCAGCACC | 59.962 | 55.000 | 4.80 | 0.00 | 40.73 | 5.01 |
596 | 597 | 0.329596 | GGGATTCCAACTCAGCACCT | 59.670 | 55.000 | 4.80 | 0.00 | 0.00 | 4.00 |
597 | 598 | 1.272147 | GGGATTCCAACTCAGCACCTT | 60.272 | 52.381 | 4.80 | 0.00 | 0.00 | 3.50 |
598 | 599 | 2.519013 | GGATTCCAACTCAGCACCTTT | 58.481 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
599 | 600 | 2.893489 | GGATTCCAACTCAGCACCTTTT | 59.107 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
600 | 601 | 3.305608 | GGATTCCAACTCAGCACCTTTTG | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.44 |
601 | 602 | 2.435372 | TCCAACTCAGCACCTTTTGT | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
602 | 603 | 2.733956 | TCCAACTCAGCACCTTTTGTT | 58.266 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
603 | 604 | 3.096092 | TCCAACTCAGCACCTTTTGTTT | 58.904 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
604 | 605 | 3.513515 | TCCAACTCAGCACCTTTTGTTTT | 59.486 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
605 | 606 | 3.618150 | CCAACTCAGCACCTTTTGTTTTG | 59.382 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
606 | 607 | 4.493547 | CAACTCAGCACCTTTTGTTTTGA | 58.506 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
607 | 608 | 4.376340 | ACTCAGCACCTTTTGTTTTGAG | 57.624 | 40.909 | 0.00 | 0.00 | 36.84 | 3.02 |
608 | 609 | 4.016444 | ACTCAGCACCTTTTGTTTTGAGA | 58.984 | 39.130 | 5.68 | 0.00 | 35.55 | 3.27 |
609 | 610 | 4.646492 | ACTCAGCACCTTTTGTTTTGAGAT | 59.354 | 37.500 | 5.68 | 0.00 | 35.55 | 2.75 |
610 | 611 | 5.127682 | ACTCAGCACCTTTTGTTTTGAGATT | 59.872 | 36.000 | 5.68 | 0.00 | 35.55 | 2.40 |
611 | 612 | 5.976458 | TCAGCACCTTTTGTTTTGAGATTT | 58.024 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
612 | 613 | 6.405538 | TCAGCACCTTTTGTTTTGAGATTTT | 58.594 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
613 | 614 | 6.313411 | TCAGCACCTTTTGTTTTGAGATTTTG | 59.687 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
614 | 615 | 6.313411 | CAGCACCTTTTGTTTTGAGATTTTGA | 59.687 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
615 | 616 | 6.536224 | AGCACCTTTTGTTTTGAGATTTTGAG | 59.464 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
616 | 617 | 6.534793 | GCACCTTTTGTTTTGAGATTTTGAGA | 59.465 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
617 | 618 | 7.064490 | GCACCTTTTGTTTTGAGATTTTGAGAA | 59.936 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
618 | 619 | 8.598075 | CACCTTTTGTTTTGAGATTTTGAGAAG | 58.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
619 | 620 | 8.531146 | ACCTTTTGTTTTGAGATTTTGAGAAGA | 58.469 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
620 | 621 | 9.028185 | CCTTTTGTTTTGAGATTTTGAGAAGAG | 57.972 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
621 | 622 | 9.578439 | CTTTTGTTTTGAGATTTTGAGAAGAGT | 57.422 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
622 | 623 | 9.927668 | TTTTGTTTTGAGATTTTGAGAAGAGTT | 57.072 | 25.926 | 0.00 | 0.00 | 0.00 | 3.01 |
623 | 624 | 9.573133 | TTTGTTTTGAGATTTTGAGAAGAGTTC | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
624 | 625 | 7.707104 | TGTTTTGAGATTTTGAGAAGAGTTCC | 58.293 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
625 | 626 | 7.557719 | TGTTTTGAGATTTTGAGAAGAGTTCCT | 59.442 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
626 | 627 | 7.736447 | TTTGAGATTTTGAGAAGAGTTCCTC | 57.264 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
627 | 628 | 6.678568 | TGAGATTTTGAGAAGAGTTCCTCT | 57.321 | 37.500 | 0.00 | 0.00 | 43.37 | 3.69 |
637 | 638 | 2.614259 | AGAGTTCCTCTTTGGAGAGCA | 58.386 | 47.619 | 0.00 | 0.00 | 46.64 | 4.26 |
638 | 639 | 2.301583 | AGAGTTCCTCTTTGGAGAGCAC | 59.698 | 50.000 | 0.00 | 0.00 | 46.64 | 4.40 |
639 | 640 | 2.037772 | GAGTTCCTCTTTGGAGAGCACA | 59.962 | 50.000 | 0.00 | 0.00 | 46.64 | 4.57 |
640 | 641 | 2.038295 | AGTTCCTCTTTGGAGAGCACAG | 59.962 | 50.000 | 0.00 | 0.00 | 46.64 | 3.66 |
641 | 642 | 1.722034 | TCCTCTTTGGAGAGCACAGT | 58.278 | 50.000 | 0.00 | 0.00 | 46.64 | 3.55 |
642 | 643 | 2.889512 | TCCTCTTTGGAGAGCACAGTA | 58.110 | 47.619 | 0.00 | 0.00 | 46.64 | 2.74 |
643 | 644 | 2.563179 | TCCTCTTTGGAGAGCACAGTAC | 59.437 | 50.000 | 0.00 | 0.00 | 46.64 | 2.73 |
644 | 645 | 2.600731 | CTCTTTGGAGAGCACAGTACG | 58.399 | 52.381 | 0.00 | 0.00 | 42.72 | 3.67 |
645 | 646 | 2.229062 | CTCTTTGGAGAGCACAGTACGA | 59.771 | 50.000 | 0.00 | 0.00 | 42.72 | 3.43 |
646 | 647 | 2.826128 | TCTTTGGAGAGCACAGTACGAT | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
647 | 648 | 2.654749 | TTGGAGAGCACAGTACGATG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
648 | 649 | 1.834188 | TGGAGAGCACAGTACGATGA | 58.166 | 50.000 | 3.82 | 0.00 | 0.00 | 2.92 |
649 | 650 | 2.167662 | TGGAGAGCACAGTACGATGAA | 58.832 | 47.619 | 3.82 | 0.00 | 0.00 | 2.57 |
650 | 651 | 2.560981 | TGGAGAGCACAGTACGATGAAA | 59.439 | 45.455 | 3.82 | 0.00 | 0.00 | 2.69 |
651 | 652 | 3.182967 | GGAGAGCACAGTACGATGAAAG | 58.817 | 50.000 | 3.82 | 0.00 | 0.00 | 2.62 |
652 | 653 | 3.367498 | GGAGAGCACAGTACGATGAAAGT | 60.367 | 47.826 | 3.82 | 0.00 | 0.00 | 2.66 |
1034 | 1035 | 1.382557 | TCCGCTTATCTCCAGCCCA | 60.383 | 57.895 | 0.00 | 0.00 | 33.29 | 5.36 |
1294 | 1295 | 2.894731 | AGCATAGATCCGGAGATTCCA | 58.105 | 47.619 | 11.34 | 0.00 | 35.91 | 3.53 |
1355 | 1356 | 1.228245 | GGCAAGAGACAACCTGGCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
1378 | 1379 | 6.293955 | GCAAACTGAAACATCTTAGTAGCCAA | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 4.52 |
1396 | 1397 | 5.252547 | AGCCAAAGGAAAAGAAAGCAAAAA | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
1458 | 1459 | 2.395651 | CGTGAAAACGGGGTTGTGA | 58.604 | 52.632 | 0.00 | 0.00 | 0.00 | 3.58 |
1674 | 1675 | 3.922375 | ACCATGAGGGAAAGGTGAAAAA | 58.078 | 40.909 | 0.00 | 0.00 | 41.15 | 1.94 |
1938 | 1939 | 1.926108 | ACTAAGCAGAGGTCCGAACT | 58.074 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1993 | 1994 | 1.367346 | TAGGGGTGAAATGCCACTCA | 58.633 | 50.000 | 0.00 | 0.00 | 39.36 | 3.41 |
2059 | 2060 | 3.451178 | GCAGTTAACTGGACATCTAGGGA | 59.549 | 47.826 | 31.42 | 0.00 | 43.94 | 4.20 |
2073 | 2074 | 5.882557 | ACATCTAGGGATAAAGCACTGTTTG | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2074 | 2075 | 5.755409 | TCTAGGGATAAAGCACTGTTTGA | 57.245 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2075 | 2076 | 6.121776 | TCTAGGGATAAAGCACTGTTTGAA | 57.878 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2076 | 2077 | 6.721318 | TCTAGGGATAAAGCACTGTTTGAAT | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2077 | 2078 | 5.904362 | AGGGATAAAGCACTGTTTGAATC | 57.096 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2078 | 2079 | 5.324409 | AGGGATAAAGCACTGTTTGAATCA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2079 | 2080 | 5.183904 | AGGGATAAAGCACTGTTTGAATCAC | 59.816 | 40.000 | 0.00 | 1.66 | 0.00 | 3.06 |
2080 | 2081 | 5.402398 | GGATAAAGCACTGTTTGAATCACC | 58.598 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2081 | 2082 | 5.183904 | GGATAAAGCACTGTTTGAATCACCT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2082 | 2083 | 6.294731 | GGATAAAGCACTGTTTGAATCACCTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
2083 | 2084 | 3.996150 | AGCACTGTTTGAATCACCTTG | 57.004 | 42.857 | 0.00 | 0.00 | 0.00 | 3.61 |
2084 | 2085 | 2.624838 | AGCACTGTTTGAATCACCTTGG | 59.375 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
2085 | 2086 | 2.863704 | GCACTGTTTGAATCACCTTGGC | 60.864 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2086 | 2087 | 2.624838 | CACTGTTTGAATCACCTTGGCT | 59.375 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
2087 | 2088 | 3.068590 | CACTGTTTGAATCACCTTGGCTT | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
2088 | 2089 | 3.319122 | ACTGTTTGAATCACCTTGGCTTC | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2089 | 2090 | 2.293122 | TGTTTGAATCACCTTGGCTTCG | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
2090 | 2091 | 0.881118 | TTGAATCACCTTGGCTTCGC | 59.119 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2177 | 2977 | 3.359033 | AGATCAATTAAGCTGCTTGCCA | 58.641 | 40.909 | 24.35 | 8.98 | 44.23 | 4.92 |
2202 | 3002 | 4.082571 | CCTACTTGCAAGTTAGCTTTGCAT | 60.083 | 41.667 | 35.20 | 12.41 | 40.37 | 3.96 |
2217 | 3017 | 1.182667 | TGCATGTAGGCGTACACTCT | 58.817 | 50.000 | 20.67 | 3.44 | 42.06 | 3.24 |
2263 | 4066 | 2.029964 | GAAAGTGGTGGCGGACGA | 59.970 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 70 | 5.531287 | ACAACCCATCTTTTTGTCTCAGTAC | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
101 | 102 | 3.116939 | ACTGTCCATCCTACCTGCTCTAT | 60.117 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
107 | 108 | 1.909302 | ACCAACTGTCCATCCTACCTG | 59.091 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
119 | 120 | 5.023452 | TCCATACTAGATGTGACCAACTGT | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
130 | 131 | 6.556212 | GTCCATGTACGATCCATACTAGATG | 58.444 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
252 | 253 | 0.889186 | TCGCTCAAAGGGTTGAAGGC | 60.889 | 55.000 | 0.00 | 0.00 | 43.18 | 4.35 |
379 | 380 | 7.056635 | CCACTTATTGAACAGGATCTATGGTT | 58.943 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
533 | 534 | 6.328782 | TCTGAGGAATCTAGTTACAGGAGA | 57.671 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
534 | 535 | 6.183360 | GGTTCTGAGGAATCTAGTTACAGGAG | 60.183 | 46.154 | 0.00 | 0.00 | 33.71 | 3.69 |
535 | 536 | 5.657302 | GGTTCTGAGGAATCTAGTTACAGGA | 59.343 | 44.000 | 0.00 | 0.00 | 33.71 | 3.86 |
536 | 537 | 5.422331 | TGGTTCTGAGGAATCTAGTTACAGG | 59.578 | 44.000 | 0.00 | 0.00 | 33.95 | 4.00 |
537 | 538 | 6.071334 | TGTGGTTCTGAGGAATCTAGTTACAG | 60.071 | 42.308 | 0.00 | 0.00 | 33.95 | 2.74 |
538 | 539 | 5.778241 | TGTGGTTCTGAGGAATCTAGTTACA | 59.222 | 40.000 | 0.00 | 0.00 | 33.95 | 2.41 |
539 | 540 | 6.282199 | TGTGGTTCTGAGGAATCTAGTTAC | 57.718 | 41.667 | 0.00 | 0.00 | 33.95 | 2.50 |
540 | 541 | 6.724441 | TCTTGTGGTTCTGAGGAATCTAGTTA | 59.276 | 38.462 | 0.00 | 0.00 | 33.95 | 2.24 |
541 | 542 | 5.544176 | TCTTGTGGTTCTGAGGAATCTAGTT | 59.456 | 40.000 | 0.00 | 0.00 | 33.95 | 2.24 |
542 | 543 | 5.087323 | TCTTGTGGTTCTGAGGAATCTAGT | 58.913 | 41.667 | 0.00 | 0.00 | 33.95 | 2.57 |
543 | 544 | 5.667539 | TCTTGTGGTTCTGAGGAATCTAG | 57.332 | 43.478 | 0.00 | 0.00 | 33.95 | 2.43 |
544 | 545 | 6.352222 | GGATTCTTGTGGTTCTGAGGAATCTA | 60.352 | 42.308 | 0.00 | 0.00 | 38.21 | 1.98 |
545 | 546 | 4.982241 | TTCTTGTGGTTCTGAGGAATCT | 57.018 | 40.909 | 0.00 | 0.00 | 33.95 | 2.40 |
546 | 547 | 4.637977 | GGATTCTTGTGGTTCTGAGGAATC | 59.362 | 45.833 | 0.00 | 0.00 | 37.74 | 2.52 |
547 | 548 | 4.290722 | AGGATTCTTGTGGTTCTGAGGAAT | 59.709 | 41.667 | 0.00 | 0.00 | 33.71 | 3.01 |
548 | 549 | 3.652869 | AGGATTCTTGTGGTTCTGAGGAA | 59.347 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
549 | 550 | 3.251484 | AGGATTCTTGTGGTTCTGAGGA | 58.749 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
550 | 551 | 3.710209 | AGGATTCTTGTGGTTCTGAGG | 57.290 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
551 | 552 | 6.042638 | TCTAAGGATTCTTGTGGTTCTGAG | 57.957 | 41.667 | 0.00 | 0.00 | 34.59 | 3.35 |
552 | 553 | 6.433847 | TTCTAAGGATTCTTGTGGTTCTGA | 57.566 | 37.500 | 0.00 | 0.00 | 34.59 | 3.27 |
553 | 554 | 6.094603 | CCATTCTAAGGATTCTTGTGGTTCTG | 59.905 | 42.308 | 0.00 | 0.00 | 34.59 | 3.02 |
554 | 555 | 6.183347 | CCATTCTAAGGATTCTTGTGGTTCT | 58.817 | 40.000 | 0.00 | 0.00 | 34.59 | 3.01 |
555 | 556 | 5.358160 | CCCATTCTAAGGATTCTTGTGGTTC | 59.642 | 44.000 | 0.00 | 0.00 | 34.59 | 3.62 |
556 | 557 | 5.015178 | TCCCATTCTAAGGATTCTTGTGGTT | 59.985 | 40.000 | 0.00 | 0.00 | 34.59 | 3.67 |
557 | 558 | 4.540099 | TCCCATTCTAAGGATTCTTGTGGT | 59.460 | 41.667 | 0.00 | 0.00 | 34.59 | 4.16 |
558 | 559 | 5.116084 | TCCCATTCTAAGGATTCTTGTGG | 57.884 | 43.478 | 0.00 | 0.00 | 34.59 | 4.17 |
566 | 567 | 5.433051 | TGAGTTGGAATCCCATTCTAAGGAT | 59.567 | 40.000 | 0.00 | 0.00 | 45.01 | 3.24 |
567 | 568 | 4.788075 | TGAGTTGGAATCCCATTCTAAGGA | 59.212 | 41.667 | 0.00 | 0.00 | 43.12 | 3.36 |
568 | 569 | 5.116084 | TGAGTTGGAATCCCATTCTAAGG | 57.884 | 43.478 | 0.00 | 0.00 | 43.12 | 2.69 |
569 | 570 | 4.578105 | GCTGAGTTGGAATCCCATTCTAAG | 59.422 | 45.833 | 0.00 | 0.00 | 43.12 | 2.18 |
570 | 571 | 4.018506 | TGCTGAGTTGGAATCCCATTCTAA | 60.019 | 41.667 | 0.00 | 0.00 | 43.12 | 2.10 |
571 | 572 | 3.523157 | TGCTGAGTTGGAATCCCATTCTA | 59.477 | 43.478 | 0.00 | 0.00 | 43.12 | 2.10 |
572 | 573 | 2.309755 | TGCTGAGTTGGAATCCCATTCT | 59.690 | 45.455 | 0.00 | 0.00 | 43.12 | 2.40 |
573 | 574 | 2.424956 | GTGCTGAGTTGGAATCCCATTC | 59.575 | 50.000 | 0.00 | 0.00 | 43.12 | 2.67 |
574 | 575 | 2.450476 | GTGCTGAGTTGGAATCCCATT | 58.550 | 47.619 | 0.00 | 0.00 | 43.12 | 3.16 |
575 | 576 | 1.341383 | GGTGCTGAGTTGGAATCCCAT | 60.341 | 52.381 | 0.00 | 0.00 | 43.12 | 4.00 |
576 | 577 | 0.038166 | GGTGCTGAGTTGGAATCCCA | 59.962 | 55.000 | 0.00 | 0.00 | 41.64 | 4.37 |
577 | 578 | 0.329596 | AGGTGCTGAGTTGGAATCCC | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
578 | 579 | 2.206576 | AAGGTGCTGAGTTGGAATCC | 57.793 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
579 | 580 | 3.319122 | ACAAAAGGTGCTGAGTTGGAATC | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
580 | 581 | 3.299503 | ACAAAAGGTGCTGAGTTGGAAT | 58.700 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
581 | 582 | 2.733956 | ACAAAAGGTGCTGAGTTGGAA | 58.266 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
582 | 583 | 2.435372 | ACAAAAGGTGCTGAGTTGGA | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
583 | 584 | 3.525268 | AAACAAAAGGTGCTGAGTTGG | 57.475 | 42.857 | 0.00 | 0.00 | 0.00 | 3.77 |
584 | 585 | 4.493547 | TCAAAACAAAAGGTGCTGAGTTG | 58.506 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
585 | 586 | 4.462483 | TCTCAAAACAAAAGGTGCTGAGTT | 59.538 | 37.500 | 0.00 | 0.00 | 38.89 | 3.01 |
586 | 587 | 4.016444 | TCTCAAAACAAAAGGTGCTGAGT | 58.984 | 39.130 | 0.00 | 0.00 | 38.89 | 3.41 |
587 | 588 | 4.637483 | TCTCAAAACAAAAGGTGCTGAG | 57.363 | 40.909 | 0.00 | 0.00 | 39.04 | 3.35 |
588 | 589 | 5.596836 | AATCTCAAAACAAAAGGTGCTGA | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
589 | 590 | 6.313411 | TCAAAATCTCAAAACAAAAGGTGCTG | 59.687 | 34.615 | 0.00 | 0.00 | 0.00 | 4.41 |
590 | 591 | 6.405538 | TCAAAATCTCAAAACAAAAGGTGCT | 58.594 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
591 | 592 | 6.534793 | TCTCAAAATCTCAAAACAAAAGGTGC | 59.465 | 34.615 | 0.00 | 0.00 | 0.00 | 5.01 |
592 | 593 | 8.477984 | TTCTCAAAATCTCAAAACAAAAGGTG | 57.522 | 30.769 | 0.00 | 0.00 | 0.00 | 4.00 |
593 | 594 | 8.531146 | TCTTCTCAAAATCTCAAAACAAAAGGT | 58.469 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
594 | 595 | 8.931385 | TCTTCTCAAAATCTCAAAACAAAAGG | 57.069 | 30.769 | 0.00 | 0.00 | 0.00 | 3.11 |
595 | 596 | 9.578439 | ACTCTTCTCAAAATCTCAAAACAAAAG | 57.422 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
596 | 597 | 9.927668 | AACTCTTCTCAAAATCTCAAAACAAAA | 57.072 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
597 | 598 | 9.573133 | GAACTCTTCTCAAAATCTCAAAACAAA | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
598 | 599 | 8.190784 | GGAACTCTTCTCAAAATCTCAAAACAA | 58.809 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
599 | 600 | 7.557719 | AGGAACTCTTCTCAAAATCTCAAAACA | 59.442 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
600 | 601 | 7.935520 | AGGAACTCTTCTCAAAATCTCAAAAC | 58.064 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
625 | 626 | 2.235891 | TCGTACTGTGCTCTCCAAAGA | 58.764 | 47.619 | 0.00 | 0.00 | 32.77 | 2.52 |
626 | 627 | 2.724977 | TCGTACTGTGCTCTCCAAAG | 57.275 | 50.000 | 0.00 | 0.00 | 34.75 | 2.77 |
627 | 628 | 2.560981 | TCATCGTACTGTGCTCTCCAAA | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
628 | 629 | 2.167662 | TCATCGTACTGTGCTCTCCAA | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
629 | 630 | 1.834188 | TCATCGTACTGTGCTCTCCA | 58.166 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
630 | 631 | 2.941453 | TTCATCGTACTGTGCTCTCC | 57.059 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
631 | 632 | 3.839293 | ACTTTCATCGTACTGTGCTCTC | 58.161 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
632 | 633 | 3.944055 | ACTTTCATCGTACTGTGCTCT | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 4.09 |
1034 | 1035 | 7.484975 | GCTATCATAGTATCCGCTAAGTTCAT | 58.515 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1355 | 1356 | 7.040409 | CCTTTGGCTACTAAGATGTTTCAGTTT | 60.040 | 37.037 | 0.00 | 0.00 | 32.20 | 2.66 |
1378 | 1379 | 6.257849 | GGAATCGTTTTTGCTTTCTTTTCCTT | 59.742 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
1413 | 1414 | 2.512515 | GCTCCCATTTCGCTCGCT | 60.513 | 61.111 | 0.00 | 0.00 | 0.00 | 4.93 |
1458 | 1459 | 2.738846 | CACAACGCTTGTATTGCTCTCT | 59.261 | 45.455 | 3.60 | 0.00 | 43.23 | 3.10 |
1639 | 1640 | 6.923670 | TCCCTCATGGTACTACTTCTCTATT | 58.076 | 40.000 | 0.00 | 0.00 | 34.77 | 1.73 |
1644 | 1645 | 4.717280 | CCTTTCCCTCATGGTACTACTTCT | 59.283 | 45.833 | 0.00 | 0.00 | 34.77 | 2.85 |
1692 | 1693 | 3.562557 | AGCACGGTTTCACGTTCTATTTT | 59.437 | 39.130 | 0.00 | 0.00 | 46.25 | 1.82 |
1938 | 1939 | 3.681417 | CGCTGATTCTTCAACATCAGTCA | 59.319 | 43.478 | 10.14 | 0.00 | 45.69 | 3.41 |
2043 | 2044 | 4.721776 | TGCTTTATCCCTAGATGTCCAGTT | 59.278 | 41.667 | 0.00 | 0.00 | 33.67 | 3.16 |
2059 | 2060 | 6.449698 | CAAGGTGATTCAAACAGTGCTTTAT | 58.550 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2085 | 2086 | 1.941734 | GATCTCGACTGCGGCGAAG | 60.942 | 63.158 | 14.72 | 14.72 | 37.32 | 3.79 |
2086 | 2087 | 2.102357 | GATCTCGACTGCGGCGAA | 59.898 | 61.111 | 12.98 | 0.00 | 37.32 | 4.70 |
2087 | 2088 | 3.889044 | GGATCTCGACTGCGGCGA | 61.889 | 66.667 | 12.98 | 10.80 | 38.28 | 5.54 |
2088 | 2089 | 4.193334 | TGGATCTCGACTGCGGCG | 62.193 | 66.667 | 0.51 | 0.51 | 38.28 | 6.46 |
2089 | 2090 | 2.583593 | GTGGATCTCGACTGCGGC | 60.584 | 66.667 | 0.00 | 0.00 | 38.28 | 6.53 |
2090 | 2091 | 1.064946 | GAGTGGATCTCGACTGCGG | 59.935 | 63.158 | 0.00 | 0.00 | 35.02 | 5.69 |
2091 | 2092 | 4.700037 | GAGTGGATCTCGACTGCG | 57.300 | 61.111 | 0.00 | 0.00 | 35.02 | 5.18 |
2177 | 2977 | 3.425162 | AAGCTAACTTGCAAGTAGGCT | 57.575 | 42.857 | 34.01 | 34.01 | 43.61 | 4.58 |
2182 | 2982 | 3.068590 | ACATGCAAAGCTAACTTGCAAGT | 59.931 | 39.130 | 26.36 | 26.36 | 40.66 | 3.16 |
2202 | 3002 | 0.896479 | TGCCAGAGTGTACGCCTACA | 60.896 | 55.000 | 1.98 | 0.26 | 0.00 | 2.74 |
2217 | 3017 | 6.830324 | ACTTAGAATGCTAGATGAAATTGCCA | 59.170 | 34.615 | 0.00 | 0.00 | 0.00 | 4.92 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.