Multiple sequence alignment - TraesCS5B01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G423300 chr5B 100.000 2255 0 0 1 2255 599750329 599748075 0 4165
1 TraesCS5B01G423300 chr5B 95.942 616 24 1 1639 2254 332220881 332221495 0 998
2 TraesCS5B01G423300 chr6D 97.545 1385 33 1 1 1385 389255236 389253853 0 2368
3 TraesCS5B01G423300 chr6D 97.473 1385 34 1 1 1385 389250441 389249058 0 2362
4 TraesCS5B01G423300 chr3D 97.545 1385 32 2 1 1385 589265456 589266838 0 2368
5 TraesCS5B01G423300 chr7B 97.473 1385 33 2 1 1385 663101358 663102740 0 2362
6 TraesCS5B01G423300 chr7B 97.184 1385 38 1 1 1385 662724471 662723088 0 2340
7 TraesCS5B01G423300 chr7B 97.245 617 14 3 1638 2254 19445201 19444588 0 1042
8 TraesCS5B01G423300 chr7B 96.104 616 22 2 1639 2254 19458722 19458109 0 1003
9 TraesCS5B01G423300 chr7B 95.948 617 23 2 1638 2254 114214814 114214200 0 1000
10 TraesCS5B01G423300 chr5D 97.473 1385 30 3 1 1385 503243339 503241960 0 2359
11 TraesCS5B01G423300 chr5D 97.329 1385 35 2 1 1385 503239093 503237711 0 2351
12 TraesCS5B01G423300 chr3A 97.329 1385 36 1 1 1385 66007065 66008448 0 2351
13 TraesCS5B01G423300 chr3A 97.329 1385 36 1 1 1385 593312755 593311372 0 2351
14 TraesCS5B01G423300 chr4B 97.083 617 16 2 1638 2254 37834497 37835111 0 1038
15 TraesCS5B01G423300 chr4B 96.921 617 18 1 1638 2254 54731238 54731853 0 1033
16 TraesCS5B01G423300 chr4B 96.753 616 19 1 1639 2254 568151858 568151244 0 1026
17 TraesCS5B01G423300 chr4B 96.434 617 21 1 1638 2254 132861487 132862102 0 1016
18 TraesCS5B01G423300 chr3B 96.110 617 21 3 1638 2253 493941463 493942077 0 1003


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G423300 chr5B 599748075 599750329 2254 True 4165 4165 100.000 1 2255 1 chr5B.!!$R1 2254
1 TraesCS5B01G423300 chr5B 332220881 332221495 614 False 998 998 95.942 1639 2254 1 chr5B.!!$F1 615
2 TraesCS5B01G423300 chr6D 389249058 389255236 6178 True 2365 2368 97.509 1 1385 2 chr6D.!!$R1 1384
3 TraesCS5B01G423300 chr3D 589265456 589266838 1382 False 2368 2368 97.545 1 1385 1 chr3D.!!$F1 1384
4 TraesCS5B01G423300 chr7B 663101358 663102740 1382 False 2362 2362 97.473 1 1385 1 chr7B.!!$F1 1384
5 TraesCS5B01G423300 chr7B 662723088 662724471 1383 True 2340 2340 97.184 1 1385 1 chr7B.!!$R4 1384
6 TraesCS5B01G423300 chr7B 19444588 19445201 613 True 1042 1042 97.245 1638 2254 1 chr7B.!!$R1 616
7 TraesCS5B01G423300 chr7B 19458109 19458722 613 True 1003 1003 96.104 1639 2254 1 chr7B.!!$R2 615
8 TraesCS5B01G423300 chr7B 114214200 114214814 614 True 1000 1000 95.948 1638 2254 1 chr7B.!!$R3 616
9 TraesCS5B01G423300 chr5D 503237711 503243339 5628 True 2355 2359 97.401 1 1385 2 chr5D.!!$R1 1384
10 TraesCS5B01G423300 chr3A 66007065 66008448 1383 False 2351 2351 97.329 1 1385 1 chr3A.!!$F1 1384
11 TraesCS5B01G423300 chr3A 593311372 593312755 1383 True 2351 2351 97.329 1 1385 1 chr3A.!!$R1 1384
12 TraesCS5B01G423300 chr4B 37834497 37835111 614 False 1038 1038 97.083 1638 2254 1 chr4B.!!$F1 616
13 TraesCS5B01G423300 chr4B 54731238 54731853 615 False 1033 1033 96.921 1638 2254 1 chr4B.!!$F2 616
14 TraesCS5B01G423300 chr4B 568151244 568151858 614 True 1026 1026 96.753 1639 2254 1 chr4B.!!$R1 615
15 TraesCS5B01G423300 chr4B 132861487 132862102 615 False 1016 1016 96.434 1638 2254 1 chr4B.!!$F3 616
16 TraesCS5B01G423300 chr3B 493941463 493942077 614 False 1003 1003 96.110 1638 2253 1 chr3B.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 5024 0.029474 TATCCCTTCCCCGTCCCATT 60.029 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 10647 0.036294 GCCCACAACTACAGGTCCTC 60.036 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.561530 GCCGATGCTTATTCCTCAGATACA 60.562 45.833 0.00 0.00 33.53 2.29
35 36 7.568349 TGCTTATTCCTCAGATACAGTCATTT 58.432 34.615 0.00 0.00 0.00 2.32
87 88 2.741878 TAGGCCTTCCACCTCCACGT 62.742 60.000 12.58 0.00 38.81 4.49
181 182 0.764369 TCTCAGTCCCAGTGTGGCTT 60.764 55.000 0.00 0.00 35.79 4.35
312 313 1.415289 GCCTACGGGGTATTAGCAACT 59.585 52.381 0.00 0.00 37.43 3.16
396 397 1.305201 GAAACAGCACTTCCCGTTCA 58.695 50.000 0.00 0.00 0.00 3.18
398 399 1.981256 AACAGCACTTCCCGTTCAAT 58.019 45.000 0.00 0.00 0.00 2.57
471 4721 4.625028 TCTCCATGAGATTCATAGTTGCG 58.375 43.478 0.00 0.00 34.28 4.85
493 4743 6.927381 TGCGTTACTTATAGCTTCCTTATTCC 59.073 38.462 0.00 0.00 0.00 3.01
573 4823 6.825721 CACTTCAGATTATTAGCCTGGAGTTT 59.174 38.462 0.00 0.00 42.44 2.66
727 4977 2.547855 CGAACTGATGACTTCCACCACA 60.548 50.000 0.00 0.00 0.00 4.17
741 4991 2.260844 ACCACATCAAGGTGACACTG 57.739 50.000 5.39 0.00 41.32 3.66
774 5024 0.029474 TATCCCTTCCCCGTCCCATT 60.029 55.000 0.00 0.00 0.00 3.16
843 5093 1.219393 CACTCTTCCTCCGGGCTTC 59.781 63.158 0.00 0.00 0.00 3.86
912 5163 5.762179 TCAATTGTCAACTGGTCCTATCT 57.238 39.130 5.13 0.00 0.00 1.98
924 5175 8.487028 CAACTGGTCCTATCTAAAGTAGGATTT 58.513 37.037 5.29 0.00 46.84 2.17
1053 10099 4.079901 TCGATACTGGTAGGAGAAGAACCT 60.080 45.833 0.00 0.00 41.05 3.50
1059 10105 3.181422 TGGTAGGAGAAGAACCTGACTCA 60.181 47.826 0.00 0.00 38.31 3.41
1212 10258 1.480954 TCTATCTGTTTCCACGCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
1385 10432 4.414337 ACTTGCTATCCTCTTGCCTAAG 57.586 45.455 0.00 0.00 35.16 2.18
1386 10433 3.777522 ACTTGCTATCCTCTTGCCTAAGT 59.222 43.478 0.00 0.00 35.38 2.24
1387 10434 4.226168 ACTTGCTATCCTCTTGCCTAAGTT 59.774 41.667 0.00 0.00 35.38 2.66
1388 10435 4.408182 TGCTATCCTCTTGCCTAAGTTC 57.592 45.455 0.00 0.00 35.38 3.01
1389 10436 3.774766 TGCTATCCTCTTGCCTAAGTTCA 59.225 43.478 0.00 0.00 35.38 3.18
1390 10437 4.225042 TGCTATCCTCTTGCCTAAGTTCAA 59.775 41.667 0.00 0.00 35.38 2.69
1391 10438 5.186198 GCTATCCTCTTGCCTAAGTTCAAA 58.814 41.667 0.00 0.00 35.38 2.69
1392 10439 5.648092 GCTATCCTCTTGCCTAAGTTCAAAA 59.352 40.000 0.00 0.00 35.38 2.44
1393 10440 6.151144 GCTATCCTCTTGCCTAAGTTCAAAAA 59.849 38.462 0.00 0.00 35.38 1.94
1394 10441 5.767816 TCCTCTTGCCTAAGTTCAAAAAC 57.232 39.130 0.00 0.00 35.38 2.43
1410 10457 8.306761 AGTTCAAAAACTTTATTGCATAGAGGG 58.693 33.333 0.00 0.00 43.28 4.30
1411 10458 7.775053 TCAAAAACTTTATTGCATAGAGGGT 57.225 32.000 0.00 0.00 0.00 4.34
1412 10459 8.189119 TCAAAAACTTTATTGCATAGAGGGTT 57.811 30.769 0.00 0.00 0.00 4.11
1413 10460 8.087750 TCAAAAACTTTATTGCATAGAGGGTTG 58.912 33.333 0.00 0.00 0.00 3.77
1414 10461 6.530019 AAACTTTATTGCATAGAGGGTTGG 57.470 37.500 0.00 0.00 0.00 3.77
1415 10462 5.450818 ACTTTATTGCATAGAGGGTTGGA 57.549 39.130 0.00 0.00 0.00 3.53
1416 10463 6.018433 ACTTTATTGCATAGAGGGTTGGAT 57.982 37.500 0.00 0.00 0.00 3.41
1417 10464 7.149202 ACTTTATTGCATAGAGGGTTGGATA 57.851 36.000 0.00 0.00 0.00 2.59
1418 10465 6.998673 ACTTTATTGCATAGAGGGTTGGATAC 59.001 38.462 0.00 0.00 0.00 2.24
1419 10466 3.857157 TTGCATAGAGGGTTGGATACC 57.143 47.619 0.00 0.00 46.99 2.73
1426 10473 2.509422 GGTTGGATACCGCCCCTC 59.491 66.667 0.00 0.00 37.12 4.30
1427 10474 2.509422 GTTGGATACCGCCCCTCC 59.491 66.667 0.00 0.00 0.00 4.30
1428 10475 2.070650 GTTGGATACCGCCCCTCCT 61.071 63.158 0.00 0.00 0.00 3.69
1429 10476 1.764854 TTGGATACCGCCCCTCCTC 60.765 63.158 0.00 0.00 0.00 3.71
1430 10477 2.923568 GGATACCGCCCCTCCTCC 60.924 72.222 0.00 0.00 0.00 4.30
1431 10478 2.201771 GATACCGCCCCTCCTCCT 59.798 66.667 0.00 0.00 0.00 3.69
1432 10479 1.909287 GATACCGCCCCTCCTCCTC 60.909 68.421 0.00 0.00 0.00 3.71
1433 10480 3.469978 ATACCGCCCCTCCTCCTCC 62.470 68.421 0.00 0.00 0.00 4.30
1437 10484 4.760220 GCCCCTCCTCCTCCCCAA 62.760 72.222 0.00 0.00 0.00 4.12
1438 10485 2.378522 CCCCTCCTCCTCCCCAAT 59.621 66.667 0.00 0.00 0.00 3.16
1439 10486 1.309102 CCCCTCCTCCTCCCCAATT 60.309 63.158 0.00 0.00 0.00 2.32
1440 10487 0.029059 CCCCTCCTCCTCCCCAATTA 60.029 60.000 0.00 0.00 0.00 1.40
1441 10488 1.418109 CCCCTCCTCCTCCCCAATTAT 60.418 57.143 0.00 0.00 0.00 1.28
1442 10489 2.157848 CCCCTCCTCCTCCCCAATTATA 60.158 54.545 0.00 0.00 0.00 0.98
1443 10490 3.185455 CCCTCCTCCTCCCCAATTATAG 58.815 54.545 0.00 0.00 0.00 1.31
1444 10491 3.185455 CCTCCTCCTCCCCAATTATAGG 58.815 54.545 0.00 0.00 0.00 2.57
1445 10492 2.573915 CTCCTCCTCCCCAATTATAGGC 59.426 54.545 0.00 0.00 0.00 3.93
1446 10493 1.279271 CCTCCTCCCCAATTATAGGCG 59.721 57.143 0.00 0.00 0.00 5.52
1447 10494 1.279271 CTCCTCCCCAATTATAGGCGG 59.721 57.143 0.00 0.00 0.00 6.13
1448 10495 1.064825 CCTCCCCAATTATAGGCGGT 58.935 55.000 0.00 0.00 0.00 5.68
1449 10496 1.423921 CCTCCCCAATTATAGGCGGTT 59.576 52.381 0.00 0.00 0.00 4.44
1450 10497 2.504367 CTCCCCAATTATAGGCGGTTG 58.496 52.381 0.00 0.00 0.00 3.77
1451 10498 0.958822 CCCCAATTATAGGCGGTTGC 59.041 55.000 0.00 0.00 41.71 4.17
1452 10499 1.686355 CCCAATTATAGGCGGTTGCA 58.314 50.000 0.00 0.00 45.35 4.08
1453 10500 1.608590 CCCAATTATAGGCGGTTGCAG 59.391 52.381 0.00 0.00 45.35 4.41
1454 10501 1.001378 CCAATTATAGGCGGTTGCAGC 60.001 52.381 0.00 0.00 45.35 5.25
1455 10502 0.944386 AATTATAGGCGGTTGCAGCG 59.056 50.000 0.00 0.00 45.35 5.18
1456 10503 0.105964 ATTATAGGCGGTTGCAGCGA 59.894 50.000 11.05 0.00 42.41 4.93
1457 10504 0.108089 TTATAGGCGGTTGCAGCGAA 60.108 50.000 11.05 0.00 42.41 4.70
1458 10505 0.529773 TATAGGCGGTTGCAGCGAAG 60.530 55.000 11.05 0.00 42.41 3.79
1472 10519 3.231734 CGAAGCCAAGGTGATGTGA 57.768 52.632 0.00 0.00 0.00 3.58
1473 10520 1.081892 CGAAGCCAAGGTGATGTGAG 58.918 55.000 0.00 0.00 0.00 3.51
1474 10521 1.457346 GAAGCCAAGGTGATGTGAGG 58.543 55.000 0.00 0.00 0.00 3.86
1475 10522 0.038744 AAGCCAAGGTGATGTGAGGG 59.961 55.000 0.00 0.00 0.00 4.30
1476 10523 0.842030 AGCCAAGGTGATGTGAGGGA 60.842 55.000 0.00 0.00 0.00 4.20
1477 10524 0.393537 GCCAAGGTGATGTGAGGGAG 60.394 60.000 0.00 0.00 0.00 4.30
1478 10525 0.393537 CCAAGGTGATGTGAGGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
1479 10526 0.393537 CAAGGTGATGTGAGGGAGCC 60.394 60.000 0.00 0.00 0.00 4.70
1480 10527 0.842030 AAGGTGATGTGAGGGAGCCA 60.842 55.000 0.00 0.00 0.00 4.75
1481 10528 1.078143 GGTGATGTGAGGGAGCCAC 60.078 63.158 0.00 0.00 35.23 5.01
1482 10529 1.679311 GTGATGTGAGGGAGCCACA 59.321 57.895 0.00 0.00 46.90 4.17
1483 10530 0.392193 GTGATGTGAGGGAGCCACAG 60.392 60.000 0.00 0.00 46.19 3.66
1484 10531 1.222936 GATGTGAGGGAGCCACAGG 59.777 63.158 0.00 0.00 46.19 4.00
1485 10532 1.229625 ATGTGAGGGAGCCACAGGA 60.230 57.895 0.00 0.00 46.19 3.86
1486 10533 0.622738 ATGTGAGGGAGCCACAGGAT 60.623 55.000 0.00 0.00 46.19 3.24
1487 10534 0.842030 TGTGAGGGAGCCACAGGATT 60.842 55.000 0.00 0.00 39.36 3.01
1488 10535 0.329596 GTGAGGGAGCCACAGGATTT 59.670 55.000 0.00 0.00 34.81 2.17
1489 10536 1.559682 GTGAGGGAGCCACAGGATTTA 59.440 52.381 0.00 0.00 34.81 1.40
1490 10537 1.559682 TGAGGGAGCCACAGGATTTAC 59.440 52.381 0.00 0.00 0.00 2.01
1491 10538 1.840635 GAGGGAGCCACAGGATTTACT 59.159 52.381 0.00 0.00 0.00 2.24
1492 10539 1.561542 AGGGAGCCACAGGATTTACTG 59.438 52.381 0.00 0.00 44.03 2.74
1493 10540 1.383523 GGAGCCACAGGATTTACTGC 58.616 55.000 0.00 0.00 42.21 4.40
1494 10541 1.065126 GGAGCCACAGGATTTACTGCT 60.065 52.381 0.00 0.00 42.21 4.24
1495 10542 2.284190 GAGCCACAGGATTTACTGCTC 58.716 52.381 0.00 0.00 42.21 4.26
1496 10543 1.065126 AGCCACAGGATTTACTGCTCC 60.065 52.381 0.00 0.00 42.21 4.70
1497 10544 2.019156 GCCACAGGATTTACTGCTCCC 61.019 57.143 0.00 0.00 42.21 4.30
1498 10545 1.281867 CCACAGGATTTACTGCTCCCA 59.718 52.381 0.00 0.00 42.21 4.37
1499 10546 2.359900 CACAGGATTTACTGCTCCCAC 58.640 52.381 0.00 0.00 42.21 4.61
1500 10547 2.026822 CACAGGATTTACTGCTCCCACT 60.027 50.000 0.00 0.00 42.21 4.00
1501 10548 2.237392 ACAGGATTTACTGCTCCCACTC 59.763 50.000 0.00 0.00 42.21 3.51
1502 10549 1.840635 AGGATTTACTGCTCCCACTCC 59.159 52.381 0.00 0.00 31.49 3.85
1503 10550 1.134068 GGATTTACTGCTCCCACTCCC 60.134 57.143 0.00 0.00 0.00 4.30
1504 10551 0.919710 ATTTACTGCTCCCACTCCCC 59.080 55.000 0.00 0.00 0.00 4.81
1505 10552 1.550130 TTTACTGCTCCCACTCCCCG 61.550 60.000 0.00 0.00 0.00 5.73
1514 10561 4.436998 CACTCCCCGCACGACCTC 62.437 72.222 0.00 0.00 0.00 3.85
1515 10562 4.988716 ACTCCCCGCACGACCTCA 62.989 66.667 0.00 0.00 0.00 3.86
1516 10563 4.436998 CTCCCCGCACGACCTCAC 62.437 72.222 0.00 0.00 0.00 3.51
1519 10566 4.351938 CCCGCACGACCTCACGAA 62.352 66.667 0.00 0.00 37.03 3.85
1520 10567 2.126071 CCGCACGACCTCACGAAT 60.126 61.111 0.00 0.00 37.03 3.34
1521 10568 1.736645 CCGCACGACCTCACGAATT 60.737 57.895 0.00 0.00 37.03 2.17
1522 10569 1.683790 CCGCACGACCTCACGAATTC 61.684 60.000 0.00 0.00 37.03 2.17
1523 10570 1.683790 CGCACGACCTCACGAATTCC 61.684 60.000 0.00 0.00 37.03 3.01
1524 10571 1.683790 GCACGACCTCACGAATTCCG 61.684 60.000 0.00 0.00 45.44 4.30
1536 10583 1.060122 CGAATTCCGTGTCGTAAAGGC 59.940 52.381 0.00 0.00 32.61 4.35
1537 10584 2.070783 GAATTCCGTGTCGTAAAGGCA 58.929 47.619 0.00 0.00 0.00 4.75
1546 10593 2.803956 TGTCGTAAAGGCACAGTAAAGC 59.196 45.455 0.00 0.00 0.00 3.51
1551 10598 3.165498 GGCACAGTAAAGCCGACG 58.835 61.111 0.00 0.00 41.70 5.12
1552 10599 2.474712 GCACAGTAAAGCCGACGC 59.525 61.111 0.00 0.00 0.00 5.19
1553 10600 2.769617 CACAGTAAAGCCGACGCG 59.230 61.111 3.53 3.53 41.18 6.01
1564 10611 2.858158 CGACGCGGAAAGGAAACC 59.142 61.111 12.47 0.00 0.00 3.27
1569 10616 2.281900 CGGAAAGGAAACCGCCCA 60.282 61.111 0.00 0.00 42.55 5.36
1570 10617 2.622962 CGGAAAGGAAACCGCCCAC 61.623 63.158 0.00 0.00 42.55 4.61
1571 10618 2.273179 GGAAAGGAAACCGCCCACC 61.273 63.158 0.00 0.00 0.00 4.61
1572 10619 1.228459 GAAAGGAAACCGCCCACCT 60.228 57.895 0.00 0.00 0.00 4.00
1573 10620 0.826256 GAAAGGAAACCGCCCACCTT 60.826 55.000 0.00 0.00 43.40 3.50
1574 10621 0.397957 AAAGGAAACCGCCCACCTTT 60.398 50.000 0.00 0.00 44.53 3.11
1575 10622 1.112916 AAGGAAACCGCCCACCTTTG 61.113 55.000 0.00 0.00 39.32 2.77
1576 10623 2.338620 GAAACCGCCCACCTTTGC 59.661 61.111 0.00 0.00 0.00 3.68
1577 10624 3.220999 GAAACCGCCCACCTTTGCC 62.221 63.158 0.00 0.00 0.00 4.52
1583 10630 3.673484 CCCACCTTTGCCGCAGTG 61.673 66.667 4.62 4.62 0.00 3.66
1584 10631 3.673484 CCACCTTTGCCGCAGTGG 61.673 66.667 14.02 14.02 43.50 4.00
1585 10632 2.594303 CACCTTTGCCGCAGTGGA 60.594 61.111 17.27 0.00 42.00 4.02
1586 10633 1.973281 CACCTTTGCCGCAGTGGAT 60.973 57.895 17.27 3.11 42.00 3.41
1587 10634 1.675641 ACCTTTGCCGCAGTGGATC 60.676 57.895 17.27 0.00 42.00 3.36
1588 10635 2.409870 CCTTTGCCGCAGTGGATCC 61.410 63.158 4.20 4.20 42.00 3.36
1589 10636 2.745884 TTTGCCGCAGTGGATCCG 60.746 61.111 7.39 0.00 42.00 4.18
1593 10640 3.274586 CCGCAGTGGATCCGCATG 61.275 66.667 26.71 20.59 42.00 4.06
1594 10641 3.945434 CGCAGTGGATCCGCATGC 61.945 66.667 26.71 26.69 0.00 4.06
1595 10642 3.945434 GCAGTGGATCCGCATGCG 61.945 66.667 32.60 32.60 39.44 4.73
1596 10643 2.512286 CAGTGGATCCGCATGCGT 60.512 61.111 35.55 20.95 37.81 5.24
1597 10644 2.512286 AGTGGATCCGCATGCGTG 60.512 61.111 35.55 26.59 37.81 5.34
1598 10645 2.819595 GTGGATCCGCATGCGTGT 60.820 61.111 35.55 24.53 37.81 4.49
1599 10646 2.511373 TGGATCCGCATGCGTGTC 60.511 61.111 35.55 29.69 37.81 3.67
1600 10647 3.630148 GGATCCGCATGCGTGTCG 61.630 66.667 35.55 21.80 37.81 4.35
1601 10648 2.582226 GATCCGCATGCGTGTCGA 60.582 61.111 35.55 26.02 37.81 4.20
1602 10649 2.580470 GATCCGCATGCGTGTCGAG 61.580 63.158 35.55 20.71 37.81 4.04
1603 10650 4.794439 TCCGCATGCGTGTCGAGG 62.794 66.667 35.55 20.00 37.81 4.63
1604 10651 4.794439 CCGCATGCGTGTCGAGGA 62.794 66.667 35.55 0.00 37.81 3.71
1605 10652 3.545481 CGCATGCGTGTCGAGGAC 61.545 66.667 31.33 0.00 34.35 3.85
1606 10653 3.188786 GCATGCGTGTCGAGGACC 61.189 66.667 0.00 0.00 0.00 4.46
1607 10654 2.573869 CATGCGTGTCGAGGACCT 59.426 61.111 0.00 0.00 0.00 3.85
1608 10655 1.807165 CATGCGTGTCGAGGACCTG 60.807 63.158 0.00 0.00 0.00 4.00
1609 10656 2.276116 ATGCGTGTCGAGGACCTGT 61.276 57.895 0.00 0.00 0.00 4.00
1610 10657 0.963856 ATGCGTGTCGAGGACCTGTA 60.964 55.000 0.00 0.00 0.00 2.74
1611 10658 1.136984 GCGTGTCGAGGACCTGTAG 59.863 63.158 0.00 0.00 0.00 2.74
1612 10659 1.584380 GCGTGTCGAGGACCTGTAGT 61.584 60.000 0.00 0.00 0.00 2.73
1613 10660 0.879765 CGTGTCGAGGACCTGTAGTT 59.120 55.000 0.00 0.00 0.00 2.24
1614 10661 1.401148 CGTGTCGAGGACCTGTAGTTG 60.401 57.143 0.00 0.00 0.00 3.16
1615 10662 1.612463 GTGTCGAGGACCTGTAGTTGT 59.388 52.381 0.00 0.00 0.00 3.32
1616 10663 1.611977 TGTCGAGGACCTGTAGTTGTG 59.388 52.381 0.00 0.00 0.00 3.33
1617 10664 1.067776 GTCGAGGACCTGTAGTTGTGG 60.068 57.143 0.00 0.00 0.00 4.17
1618 10665 0.246635 CGAGGACCTGTAGTTGTGGG 59.753 60.000 0.00 0.00 0.00 4.61
1619 10666 0.036294 GAGGACCTGTAGTTGTGGGC 60.036 60.000 0.00 0.00 0.00 5.36
1620 10667 1.002502 GGACCTGTAGTTGTGGGCC 60.003 63.158 0.00 0.00 42.50 5.80
1621 10668 1.002502 GACCTGTAGTTGTGGGCCC 60.003 63.158 17.59 17.59 0.00 5.80
1622 10669 1.772567 ACCTGTAGTTGTGGGCCCA 60.773 57.895 24.45 24.45 0.00 5.36
1623 10670 1.002134 CCTGTAGTTGTGGGCCCAG 60.002 63.158 29.55 11.06 0.00 4.45
1624 10671 1.002134 CTGTAGTTGTGGGCCCAGG 60.002 63.158 29.55 4.12 0.00 4.45
1625 10672 2.361230 GTAGTTGTGGGCCCAGGC 60.361 66.667 29.55 16.22 41.06 4.85
1688 10735 5.531287 GGAGGTGAATAGGCGATTTTTATGT 59.469 40.000 0.00 0.00 0.00 2.29
1719 10766 5.420421 TCAAAACATGGGAGTTTCAAAGACA 59.580 36.000 0.00 0.00 40.60 3.41
1724 10771 4.364415 TGGGAGTTTCAAAGACAAAACG 57.636 40.909 0.00 0.00 39.72 3.60
1868 10915 6.767902 TGGAAGATAGTATGAAGCCAATCAAC 59.232 38.462 0.00 0.00 32.06 3.18
1884 10931 5.501715 CAATCAACACAAGTAGTCACACAC 58.498 41.667 0.00 0.00 0.00 3.82
1886 10933 5.585820 TCAACACAAGTAGTCACACACTA 57.414 39.130 0.00 0.00 36.43 2.74
1932 10979 4.037208 AGGCAATGACTTCACAAAGACAAG 59.963 41.667 0.00 0.00 39.87 3.16
2199 11246 1.699656 CTTGGATGCTCAGAACGCGG 61.700 60.000 12.47 0.00 0.00 6.46
2254 11301 6.925718 TCAAGTGTAACAAGTCTTCAGATCAG 59.074 38.462 0.00 0.00 41.43 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.529865 CGGGTCGTCAACTTCTTTTCC 59.470 52.381 0.00 0.00 0.00 3.13
87 88 2.046023 CCTGACGGAGCAATGCCA 60.046 61.111 0.00 0.00 0.00 4.92
312 313 2.781174 AGGGGAACAACTACTGGAAACA 59.219 45.455 0.00 0.00 39.59 2.83
322 323 2.164393 CCTTGGGAGGGGAACAACT 58.836 57.895 0.00 0.00 39.55 3.16
383 384 1.269517 TGCAAATTGAACGGGAAGTGC 60.270 47.619 0.00 0.00 0.00 4.40
444 445 7.270779 CAACTATGAATCTCATGGAGAGTTCA 58.729 38.462 16.18 16.18 42.26 3.18
493 4743 5.352569 ACAATTCCGAATCTGCTTTGTCTAG 59.647 40.000 0.00 0.00 0.00 2.43
549 4799 6.567602 AACTCCAGGCTAATAATCTGAAGT 57.432 37.500 0.00 0.00 27.26 3.01
727 4977 1.337823 GCGGTACAGTGTCACCTTGAT 60.338 52.381 0.00 0.00 32.29 2.57
741 4991 4.321824 GGAAGGGATATAACTCAGCGGTAC 60.322 50.000 0.00 0.00 0.00 3.34
774 5024 9.587772 CTTAGGATTCGTTAATTCTCTTTCTCA 57.412 33.333 0.00 0.00 32.81 3.27
883 5133 5.047092 GGACCAGTTGACAATTGAATCCAAT 60.047 40.000 13.59 0.00 44.38 3.16
892 5142 7.690256 ACTTTAGATAGGACCAGTTGACAATT 58.310 34.615 0.00 0.00 0.00 2.32
1082 10128 2.783135 TCATCTTGACTTGGTTCTGCC 58.217 47.619 0.00 0.00 37.90 4.85
1187 10233 4.501071 GGCGTGGAAACAGATAGAAACTA 58.499 43.478 0.00 0.00 44.46 2.24
1212 10258 4.560128 TCATGTTTCGAGGTCTCAAGAAG 58.440 43.478 0.00 0.00 0.00 2.85
1385 10432 8.088365 ACCCTCTATGCAATAAAGTTTTTGAAC 58.912 33.333 12.03 0.00 0.00 3.18
1386 10433 8.189119 ACCCTCTATGCAATAAAGTTTTTGAA 57.811 30.769 12.03 4.87 0.00 2.69
1387 10434 7.775053 ACCCTCTATGCAATAAAGTTTTTGA 57.225 32.000 12.03 2.35 0.00 2.69
1388 10435 7.331687 CCAACCCTCTATGCAATAAAGTTTTTG 59.668 37.037 0.00 0.22 0.00 2.44
1389 10436 7.234577 TCCAACCCTCTATGCAATAAAGTTTTT 59.765 33.333 0.00 0.00 0.00 1.94
1390 10437 6.723977 TCCAACCCTCTATGCAATAAAGTTTT 59.276 34.615 0.00 0.00 0.00 2.43
1391 10438 6.252995 TCCAACCCTCTATGCAATAAAGTTT 58.747 36.000 0.00 0.00 0.00 2.66
1392 10439 5.826643 TCCAACCCTCTATGCAATAAAGTT 58.173 37.500 0.00 0.00 0.00 2.66
1393 10440 5.450818 TCCAACCCTCTATGCAATAAAGT 57.549 39.130 0.00 0.00 0.00 2.66
1394 10441 6.431234 GGTATCCAACCCTCTATGCAATAAAG 59.569 42.308 0.00 0.00 43.16 1.85
1395 10442 6.303839 GGTATCCAACCCTCTATGCAATAAA 58.696 40.000 0.00 0.00 43.16 1.40
1396 10443 5.512404 CGGTATCCAACCCTCTATGCAATAA 60.512 44.000 0.00 0.00 46.62 1.40
1397 10444 4.020573 CGGTATCCAACCCTCTATGCAATA 60.021 45.833 0.00 0.00 46.62 1.90
1398 10445 3.244561 CGGTATCCAACCCTCTATGCAAT 60.245 47.826 0.00 0.00 46.62 3.56
1399 10446 2.104111 CGGTATCCAACCCTCTATGCAA 59.896 50.000 0.00 0.00 46.62 4.08
1400 10447 1.691976 CGGTATCCAACCCTCTATGCA 59.308 52.381 0.00 0.00 46.62 3.96
1401 10448 1.608283 GCGGTATCCAACCCTCTATGC 60.608 57.143 0.00 0.00 46.62 3.14
1402 10449 1.002087 GGCGGTATCCAACCCTCTATG 59.998 57.143 0.00 0.00 46.62 2.23
1403 10450 1.349067 GGCGGTATCCAACCCTCTAT 58.651 55.000 0.00 0.00 46.62 1.98
1404 10451 0.761702 GGGCGGTATCCAACCCTCTA 60.762 60.000 6.62 0.00 46.62 2.43
1405 10452 2.070650 GGGCGGTATCCAACCCTCT 61.071 63.158 6.62 0.00 46.62 3.69
1406 10453 2.509422 GGGCGGTATCCAACCCTC 59.491 66.667 6.62 0.00 46.62 4.30
1407 10454 3.094498 GGGGCGGTATCCAACCCT 61.094 66.667 11.87 0.00 46.62 4.34
1408 10455 3.094498 AGGGGCGGTATCCAACCC 61.094 66.667 6.66 6.66 46.62 4.11
1409 10456 2.509422 GAGGGGCGGTATCCAACC 59.491 66.667 0.00 0.00 45.77 3.77
1410 10457 2.041206 GAGGAGGGGCGGTATCCAAC 62.041 65.000 0.00 0.00 35.45 3.77
1411 10458 1.764854 GAGGAGGGGCGGTATCCAA 60.765 63.158 0.00 0.00 35.45 3.53
1412 10459 2.122989 GAGGAGGGGCGGTATCCA 60.123 66.667 0.00 0.00 35.45 3.41
1413 10460 2.923568 GGAGGAGGGGCGGTATCC 60.924 72.222 0.00 0.00 0.00 2.59
1414 10461 1.909287 GAGGAGGAGGGGCGGTATC 60.909 68.421 0.00 0.00 0.00 2.24
1415 10462 2.201771 GAGGAGGAGGGGCGGTAT 59.798 66.667 0.00 0.00 0.00 2.73
1416 10463 4.153330 GGAGGAGGAGGGGCGGTA 62.153 72.222 0.00 0.00 0.00 4.02
1420 10467 4.760220 TTGGGGAGGAGGAGGGGC 62.760 72.222 0.00 0.00 0.00 5.80
1421 10468 0.029059 TAATTGGGGAGGAGGAGGGG 60.029 60.000 0.00 0.00 0.00 4.79
1422 10469 2.140098 ATAATTGGGGAGGAGGAGGG 57.860 55.000 0.00 0.00 0.00 4.30
1423 10470 3.185455 CCTATAATTGGGGAGGAGGAGG 58.815 54.545 0.00 0.00 0.00 4.30
1424 10471 2.573915 GCCTATAATTGGGGAGGAGGAG 59.426 54.545 0.00 0.00 0.00 3.69
1425 10472 2.632537 GCCTATAATTGGGGAGGAGGA 58.367 52.381 0.00 0.00 0.00 3.71
1426 10473 1.279271 CGCCTATAATTGGGGAGGAGG 59.721 57.143 0.00 0.00 39.53 4.30
1427 10474 1.279271 CCGCCTATAATTGGGGAGGAG 59.721 57.143 9.22 3.00 41.58 3.69
1428 10475 1.358152 CCGCCTATAATTGGGGAGGA 58.642 55.000 9.22 0.00 41.58 3.71
1429 10476 1.064825 ACCGCCTATAATTGGGGAGG 58.935 55.000 11.98 11.98 43.99 4.30
1430 10477 2.504367 CAACCGCCTATAATTGGGGAG 58.496 52.381 3.92 0.00 39.53 4.30
1431 10478 1.477923 GCAACCGCCTATAATTGGGGA 60.478 52.381 3.92 0.00 39.53 4.81
1432 10479 0.958822 GCAACCGCCTATAATTGGGG 59.041 55.000 0.00 0.00 40.23 4.96
1433 10480 1.608590 CTGCAACCGCCTATAATTGGG 59.391 52.381 0.00 0.00 37.32 4.12
1434 10481 1.001378 GCTGCAACCGCCTATAATTGG 60.001 52.381 0.00 0.00 37.32 3.16
1435 10482 1.334059 CGCTGCAACCGCCTATAATTG 60.334 52.381 0.00 0.00 37.32 2.32
1436 10483 0.944386 CGCTGCAACCGCCTATAATT 59.056 50.000 0.00 0.00 37.32 1.40
1437 10484 0.105964 TCGCTGCAACCGCCTATAAT 59.894 50.000 0.00 0.00 37.32 1.28
1438 10485 0.108089 TTCGCTGCAACCGCCTATAA 60.108 50.000 0.00 0.00 37.32 0.98
1439 10486 0.529773 CTTCGCTGCAACCGCCTATA 60.530 55.000 0.00 0.00 37.32 1.31
1440 10487 1.815421 CTTCGCTGCAACCGCCTAT 60.815 57.895 0.00 0.00 37.32 2.57
1441 10488 2.434185 CTTCGCTGCAACCGCCTA 60.434 61.111 0.00 0.00 37.32 3.93
1445 10492 3.599792 CTTGGCTTCGCTGCAACCG 62.600 63.158 0.00 0.31 34.04 4.44
1446 10493 2.256461 CTTGGCTTCGCTGCAACC 59.744 61.111 0.00 0.00 34.04 3.77
1447 10494 2.256461 CCTTGGCTTCGCTGCAAC 59.744 61.111 0.00 0.00 34.04 4.17
1448 10495 2.203337 ACCTTGGCTTCGCTGCAA 60.203 55.556 0.00 0.00 34.04 4.08
1449 10496 2.753009 ATCACCTTGGCTTCGCTGCA 62.753 55.000 0.00 0.00 34.04 4.41
1450 10497 2.042831 ATCACCTTGGCTTCGCTGC 61.043 57.895 0.00 0.00 0.00 5.25
1451 10498 0.957395 ACATCACCTTGGCTTCGCTG 60.957 55.000 0.00 0.00 0.00 5.18
1452 10499 0.957395 CACATCACCTTGGCTTCGCT 60.957 55.000 0.00 0.00 0.00 4.93
1453 10500 0.955428 TCACATCACCTTGGCTTCGC 60.955 55.000 0.00 0.00 0.00 4.70
1454 10501 1.081892 CTCACATCACCTTGGCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
1455 10502 1.457346 CCTCACATCACCTTGGCTTC 58.543 55.000 0.00 0.00 0.00 3.86
1456 10503 0.038744 CCCTCACATCACCTTGGCTT 59.961 55.000 0.00 0.00 0.00 4.35
1457 10504 0.842030 TCCCTCACATCACCTTGGCT 60.842 55.000 0.00 0.00 0.00 4.75
1458 10505 0.393537 CTCCCTCACATCACCTTGGC 60.394 60.000 0.00 0.00 0.00 4.52
1459 10506 0.393537 GCTCCCTCACATCACCTTGG 60.394 60.000 0.00 0.00 0.00 3.61
1460 10507 0.393537 GGCTCCCTCACATCACCTTG 60.394 60.000 0.00 0.00 0.00 3.61
1461 10508 0.842030 TGGCTCCCTCACATCACCTT 60.842 55.000 0.00 0.00 0.00 3.50
1462 10509 1.229625 TGGCTCCCTCACATCACCT 60.230 57.895 0.00 0.00 0.00 4.00
1463 10510 1.078143 GTGGCTCCCTCACATCACC 60.078 63.158 0.00 0.00 35.39 4.02
1464 10511 0.392193 CTGTGGCTCCCTCACATCAC 60.392 60.000 0.00 0.00 43.16 3.06
1465 10512 1.556373 CCTGTGGCTCCCTCACATCA 61.556 60.000 0.00 0.00 43.16 3.07
1466 10513 1.222936 CCTGTGGCTCCCTCACATC 59.777 63.158 0.00 0.00 43.16 3.06
1467 10514 0.622738 ATCCTGTGGCTCCCTCACAT 60.623 55.000 0.00 0.00 43.16 3.21
1468 10515 0.842030 AATCCTGTGGCTCCCTCACA 60.842 55.000 0.00 0.00 42.11 3.58
1469 10516 0.329596 AAATCCTGTGGCTCCCTCAC 59.670 55.000 0.00 0.00 35.82 3.51
1470 10517 1.559682 GTAAATCCTGTGGCTCCCTCA 59.440 52.381 0.00 0.00 0.00 3.86
1471 10518 1.840635 AGTAAATCCTGTGGCTCCCTC 59.159 52.381 0.00 0.00 0.00 4.30
1472 10519 1.561542 CAGTAAATCCTGTGGCTCCCT 59.438 52.381 0.00 0.00 0.00 4.20
1473 10520 2.019156 GCAGTAAATCCTGTGGCTCCC 61.019 57.143 0.00 0.00 34.84 4.30
1474 10521 1.065126 AGCAGTAAATCCTGTGGCTCC 60.065 52.381 0.00 0.00 34.84 4.70
1475 10522 2.284190 GAGCAGTAAATCCTGTGGCTC 58.716 52.381 0.00 0.00 39.38 4.70
1476 10523 1.065126 GGAGCAGTAAATCCTGTGGCT 60.065 52.381 0.00 0.00 34.84 4.75
1477 10524 1.383523 GGAGCAGTAAATCCTGTGGC 58.616 55.000 0.00 0.00 34.84 5.01
1478 10525 1.281867 TGGGAGCAGTAAATCCTGTGG 59.718 52.381 0.00 0.00 35.80 4.17
1479 10526 2.026822 AGTGGGAGCAGTAAATCCTGTG 60.027 50.000 0.00 0.00 35.80 3.66
1480 10527 2.237392 GAGTGGGAGCAGTAAATCCTGT 59.763 50.000 0.00 0.00 35.80 4.00
1481 10528 2.420687 GGAGTGGGAGCAGTAAATCCTG 60.421 54.545 0.00 0.00 35.80 3.86
1482 10529 1.840635 GGAGTGGGAGCAGTAAATCCT 59.159 52.381 0.00 0.00 35.80 3.24
1483 10530 1.134068 GGGAGTGGGAGCAGTAAATCC 60.134 57.143 0.00 0.00 34.64 3.01
1484 10531 1.134068 GGGGAGTGGGAGCAGTAAATC 60.134 57.143 0.00 0.00 0.00 2.17
1485 10532 0.919710 GGGGAGTGGGAGCAGTAAAT 59.080 55.000 0.00 0.00 0.00 1.40
1486 10533 1.550130 CGGGGAGTGGGAGCAGTAAA 61.550 60.000 0.00 0.00 0.00 2.01
1487 10534 1.987855 CGGGGAGTGGGAGCAGTAA 60.988 63.158 0.00 0.00 0.00 2.24
1488 10535 2.363795 CGGGGAGTGGGAGCAGTA 60.364 66.667 0.00 0.00 0.00 2.74
1497 10544 4.436998 GAGGTCGTGCGGGGAGTG 62.437 72.222 0.00 0.00 0.00 3.51
1498 10545 4.988716 TGAGGTCGTGCGGGGAGT 62.989 66.667 0.00 0.00 0.00 3.85
1499 10546 4.436998 GTGAGGTCGTGCGGGGAG 62.437 72.222 0.00 0.00 0.00 4.30
1502 10549 3.642778 ATTCGTGAGGTCGTGCGGG 62.643 63.158 0.00 0.00 0.00 6.13
1503 10550 1.683790 GAATTCGTGAGGTCGTGCGG 61.684 60.000 0.00 0.00 0.00 5.69
1504 10551 1.683790 GGAATTCGTGAGGTCGTGCG 61.684 60.000 0.00 0.00 0.00 5.34
1505 10552 1.683790 CGGAATTCGTGAGGTCGTGC 61.684 60.000 0.00 0.00 0.00 5.34
1506 10553 2.359792 CGGAATTCGTGAGGTCGTG 58.640 57.895 0.00 0.00 0.00 4.35
1507 10554 4.883026 CGGAATTCGTGAGGTCGT 57.117 55.556 0.00 0.00 0.00 4.34
1516 10563 1.060122 GCCTTTACGACACGGAATTCG 59.940 52.381 0.00 0.00 45.88 3.34
1517 10564 2.070783 TGCCTTTACGACACGGAATTC 58.929 47.619 0.00 0.00 26.63 2.17
1518 10565 1.802365 GTGCCTTTACGACACGGAATT 59.198 47.619 0.00 0.00 26.63 2.17
1519 10566 1.270412 TGTGCCTTTACGACACGGAAT 60.270 47.619 0.00 0.00 37.11 3.01
1520 10567 0.104487 TGTGCCTTTACGACACGGAA 59.896 50.000 0.00 0.00 37.11 4.30
1521 10568 0.319211 CTGTGCCTTTACGACACGGA 60.319 55.000 0.00 0.00 42.14 4.69
1522 10569 0.599204 ACTGTGCCTTTACGACACGG 60.599 55.000 0.00 0.00 44.50 4.94
1523 10570 2.054687 TACTGTGCCTTTACGACACG 57.945 50.000 0.00 0.00 37.11 4.49
1524 10571 3.363673 GCTTTACTGTGCCTTTACGACAC 60.364 47.826 0.00 0.00 34.86 3.67
1525 10572 2.803956 GCTTTACTGTGCCTTTACGACA 59.196 45.455 0.00 0.00 0.00 4.35
1526 10573 2.159037 GGCTTTACTGTGCCTTTACGAC 59.841 50.000 0.71 0.00 45.26 4.34
1527 10574 2.419667 GGCTTTACTGTGCCTTTACGA 58.580 47.619 0.71 0.00 45.26 3.43
1528 10575 1.127951 CGGCTTTACTGTGCCTTTACG 59.872 52.381 6.14 0.00 46.42 3.18
1529 10576 2.159037 GTCGGCTTTACTGTGCCTTTAC 59.841 50.000 6.14 0.00 46.42 2.01
1530 10577 2.419667 GTCGGCTTTACTGTGCCTTTA 58.580 47.619 6.14 0.00 46.42 1.85
1531 10578 1.235724 GTCGGCTTTACTGTGCCTTT 58.764 50.000 6.14 0.00 46.42 3.11
1532 10579 0.949105 CGTCGGCTTTACTGTGCCTT 60.949 55.000 6.14 0.00 46.42 4.35
1533 10580 1.374252 CGTCGGCTTTACTGTGCCT 60.374 57.895 6.14 0.00 46.42 4.75
1534 10581 3.023591 GCGTCGGCTTTACTGTGCC 62.024 63.158 0.00 0.00 45.25 5.01
1535 10582 2.474712 GCGTCGGCTTTACTGTGC 59.525 61.111 0.00 0.00 35.83 4.57
1536 10583 2.726691 CCGCGTCGGCTTTACTGTG 61.727 63.158 4.92 0.00 41.17 3.66
1537 10584 2.431942 CCGCGTCGGCTTTACTGT 60.432 61.111 4.92 0.00 41.17 3.55
1547 10594 2.858158 GGTTTCCTTTCCGCGTCG 59.142 61.111 4.92 0.00 0.00 5.12
1548 10595 2.858158 CGGTTTCCTTTCCGCGTC 59.142 61.111 4.92 0.00 40.28 5.19
1553 10600 2.273179 GGTGGGCGGTTTCCTTTCC 61.273 63.158 0.00 0.00 0.00 3.13
1554 10601 0.826256 AAGGTGGGCGGTTTCCTTTC 60.826 55.000 0.00 0.00 37.01 2.62
1555 10602 0.397957 AAAGGTGGGCGGTTTCCTTT 60.398 50.000 0.00 0.00 42.93 3.11
1556 10603 1.112916 CAAAGGTGGGCGGTTTCCTT 61.113 55.000 0.00 0.00 41.33 3.36
1557 10604 1.530655 CAAAGGTGGGCGGTTTCCT 60.531 57.895 0.00 0.00 0.00 3.36
1558 10605 3.047735 CAAAGGTGGGCGGTTTCC 58.952 61.111 0.00 0.00 0.00 3.13
1559 10606 2.338620 GCAAAGGTGGGCGGTTTC 59.661 61.111 0.00 0.00 0.00 2.78
1560 10607 3.230990 GGCAAAGGTGGGCGGTTT 61.231 61.111 0.00 0.00 0.00 3.27
1566 10613 3.673484 CACTGCGGCAAAGGTGGG 61.673 66.667 11.72 0.00 0.00 4.61
1567 10614 3.673484 CCACTGCGGCAAAGGTGG 61.673 66.667 20.92 20.92 42.29 4.61
1568 10615 1.926511 GATCCACTGCGGCAAAGGTG 61.927 60.000 16.90 14.72 33.14 4.00
1569 10616 1.675641 GATCCACTGCGGCAAAGGT 60.676 57.895 16.90 4.16 33.14 3.50
1570 10617 2.409870 GGATCCACTGCGGCAAAGG 61.410 63.158 6.95 12.71 33.14 3.11
1571 10618 2.753966 CGGATCCACTGCGGCAAAG 61.754 63.158 13.41 0.00 34.67 2.77
1572 10619 2.745884 CGGATCCACTGCGGCAAA 60.746 61.111 13.41 0.00 34.67 3.68
1579 10626 2.512286 ACGCATGCGGATCCACTG 60.512 61.111 39.95 13.16 44.69 3.66
1580 10627 2.512286 CACGCATGCGGATCCACT 60.512 61.111 39.95 17.86 44.69 4.00
1581 10628 2.813179 GACACGCATGCGGATCCAC 61.813 63.158 39.95 21.72 44.69 4.02
1582 10629 2.511373 GACACGCATGCGGATCCA 60.511 61.111 39.95 0.00 44.69 3.41
1583 10630 3.630148 CGACACGCATGCGGATCC 61.630 66.667 39.95 24.78 44.69 3.36
1584 10631 2.580470 CTCGACACGCATGCGGATC 61.580 63.158 39.95 32.68 44.69 3.36
1585 10632 2.583319 CTCGACACGCATGCGGAT 60.583 61.111 39.95 28.74 44.69 4.18
1586 10633 4.794439 CCTCGACACGCATGCGGA 62.794 66.667 39.95 26.75 44.69 5.54
1587 10634 4.794439 TCCTCGACACGCATGCGG 62.794 66.667 39.95 30.20 44.69 5.69
1588 10635 3.545481 GTCCTCGACACGCATGCG 61.545 66.667 36.79 36.79 46.03 4.73
1589 10636 3.188786 GGTCCTCGACACGCATGC 61.189 66.667 7.91 7.91 33.68 4.06
1590 10637 1.807165 CAGGTCCTCGACACGCATG 60.807 63.158 0.00 0.00 33.68 4.06
1591 10638 0.963856 TACAGGTCCTCGACACGCAT 60.964 55.000 0.00 0.00 33.68 4.73
1592 10639 1.583495 CTACAGGTCCTCGACACGCA 61.583 60.000 0.00 0.00 33.68 5.24
1593 10640 1.136984 CTACAGGTCCTCGACACGC 59.863 63.158 0.00 0.00 33.68 5.34
1594 10641 0.879765 AACTACAGGTCCTCGACACG 59.120 55.000 0.00 0.00 33.68 4.49
1595 10642 1.612463 ACAACTACAGGTCCTCGACAC 59.388 52.381 0.00 0.00 33.68 3.67
1596 10643 1.611977 CACAACTACAGGTCCTCGACA 59.388 52.381 0.00 0.00 33.68 4.35
1597 10644 1.067776 CCACAACTACAGGTCCTCGAC 60.068 57.143 0.00 0.00 0.00 4.20
1598 10645 1.254026 CCACAACTACAGGTCCTCGA 58.746 55.000 0.00 0.00 0.00 4.04
1599 10646 0.246635 CCCACAACTACAGGTCCTCG 59.753 60.000 0.00 0.00 0.00 4.63
1600 10647 0.036294 GCCCACAACTACAGGTCCTC 60.036 60.000 0.00 0.00 0.00 3.71
1601 10648 1.489560 GGCCCACAACTACAGGTCCT 61.490 60.000 0.00 0.00 0.00 3.85
1602 10649 1.002502 GGCCCACAACTACAGGTCC 60.003 63.158 0.00 0.00 0.00 4.46
1603 10650 1.002502 GGGCCCACAACTACAGGTC 60.003 63.158 19.95 0.00 0.00 3.85
1604 10651 1.772567 TGGGCCCACAACTACAGGT 60.773 57.895 24.45 0.00 0.00 4.00
1605 10652 1.002134 CTGGGCCCACAACTACAGG 60.002 63.158 24.45 3.38 0.00 4.00
1606 10653 1.002134 CCTGGGCCCACAACTACAG 60.002 63.158 24.45 8.64 0.00 2.74
1607 10654 3.166434 CCTGGGCCCACAACTACA 58.834 61.111 24.45 0.00 0.00 2.74
1608 10655 2.361230 GCCTGGGCCCACAACTAC 60.361 66.667 24.45 2.44 34.56 2.73
1626 10673 2.170985 CTTTCAACGTCGCCGCAG 59.829 61.111 0.00 0.00 37.70 5.18
1627 10674 2.586635 ACTTTCAACGTCGCCGCA 60.587 55.556 0.00 0.00 37.70 5.69
1628 10675 2.127758 CACTTTCAACGTCGCCGC 60.128 61.111 0.00 0.00 37.70 6.53
1629 10676 1.279527 TAGCACTTTCAACGTCGCCG 61.280 55.000 0.00 0.00 40.83 6.46
1630 10677 0.438830 CTAGCACTTTCAACGTCGCC 59.561 55.000 0.00 0.00 0.00 5.54
1631 10678 1.137513 ACTAGCACTTTCAACGTCGC 58.862 50.000 0.00 0.00 0.00 5.19
1632 10679 4.258899 CGATAACTAGCACTTTCAACGTCG 60.259 45.833 0.00 0.00 0.00 5.12
1633 10680 4.855388 TCGATAACTAGCACTTTCAACGTC 59.145 41.667 0.00 0.00 0.00 4.34
1634 10681 4.620184 GTCGATAACTAGCACTTTCAACGT 59.380 41.667 0.00 0.00 0.00 3.99
1635 10682 4.857588 AGTCGATAACTAGCACTTTCAACG 59.142 41.667 0.00 0.00 36.07 4.10
1666 10713 7.990886 TCTTACATAAAAATCGCCTATTCACCT 59.009 33.333 0.00 0.00 0.00 4.00
1688 10735 6.831353 TGAAACTCCCATGTTTTGAAGTCTTA 59.169 34.615 0.00 0.00 39.86 2.10
1719 10766 5.277634 CGAATAGTGTTGTTTCTCCCGTTTT 60.278 40.000 0.00 0.00 0.00 2.43
1724 10771 5.220605 GCATACGAATAGTGTTGTTTCTCCC 60.221 44.000 0.00 0.00 0.00 4.30
1868 10915 6.040247 TGACTTTAGTGTGTGACTACTTGTG 58.960 40.000 0.00 0.00 36.86 3.33
1884 10931 3.141398 TGCTCTGCCTGTTTGACTTTAG 58.859 45.455 0.00 0.00 0.00 1.85
1886 10933 2.057137 TGCTCTGCCTGTTTGACTTT 57.943 45.000 0.00 0.00 0.00 2.66
1932 10979 7.576861 ATCTCTTACTCTCCTTACTTACAGC 57.423 40.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.