Multiple sequence alignment - TraesCS5B01G423000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G423000 chr5B 100.000 5943 0 0 1 5943 599125951 599120009 0.000000e+00 10975.0
1 TraesCS5B01G423000 chr5B 90.386 3339 239 40 1533 4839 598756916 598753628 0.000000e+00 4313.0
2 TraesCS5B01G423000 chr5B 88.160 1478 124 26 2865 4320 598659147 598657699 0.000000e+00 1712.0
3 TraesCS5B01G423000 chr5B 84.805 1053 130 16 1533 2561 598660495 598659449 0.000000e+00 1031.0
4 TraesCS5B01G423000 chr5B 88.163 245 20 6 2623 2864 598659431 598659193 3.510000e-72 283.0
5 TraesCS5B01G423000 chr5B 92.000 50 4 0 2793 2842 704077644 704077693 2.970000e-08 71.3
6 TraesCS5B01G423000 chr5D 90.076 3174 233 36 1533 4678 487004664 487007783 0.000000e+00 4041.0
7 TraesCS5B01G423000 chr5D 91.905 2656 157 25 715 3352 487176188 487173573 0.000000e+00 3661.0
8 TraesCS5B01G423000 chr5D 87.695 1666 116 37 3347 4995 487173149 487171556 0.000000e+00 1858.0
9 TraesCS5B01G423000 chr5D 88.632 1469 126 22 2865 4320 486898246 486896806 0.000000e+00 1749.0
10 TraesCS5B01G423000 chr5D 88.960 1413 113 23 2865 4253 486908833 486907440 0.000000e+00 1705.0
11 TraesCS5B01G423000 chr5D 85.741 1052 126 13 1526 2561 486899595 486898552 0.000000e+00 1090.0
12 TraesCS5B01G423000 chr5D 85.795 1056 119 19 1526 2557 486910187 486909139 0.000000e+00 1090.0
13 TraesCS5B01G423000 chr5D 83.019 689 63 25 26 681 487176968 487176301 5.170000e-160 575.0
14 TraesCS5B01G423000 chr5D 85.333 375 40 7 4719 5090 487007772 487008134 2.020000e-99 374.0
15 TraesCS5B01G423000 chr5D 91.943 211 13 4 5722 5932 487167083 487166877 5.830000e-75 292.0
16 TraesCS5B01G423000 chr5D 88.750 240 20 5 2623 2858 486898534 486898298 2.710000e-73 287.0
17 TraesCS5B01G423000 chr5D 88.163 245 20 6 2623 2864 486909117 486908879 3.510000e-72 283.0
18 TraesCS5B01G423000 chr5D 88.350 206 16 1 5318 5523 487167420 487167223 2.140000e-59 241.0
19 TraesCS5B01G423000 chr5D 89.809 157 13 3 5552 5707 487167221 487167067 1.310000e-46 198.0
20 TraesCS5B01G423000 chr5A 91.092 1785 126 18 2624 4397 607595728 607593966 0.000000e+00 2385.0
21 TraesCS5B01G423000 chr5A 92.411 1344 86 8 1235 2572 607597076 607595743 0.000000e+00 1903.0
22 TraesCS5B01G423000 chr5A 88.769 1478 116 24 2865 4320 607577957 607576508 0.000000e+00 1764.0
23 TraesCS5B01G423000 chr5A 91.564 486 26 7 738 1214 607597546 607597067 0.000000e+00 656.0
24 TraesCS5B01G423000 chr5A 77.979 1049 176 38 3002 4019 67521961 67520937 1.830000e-169 606.0
25 TraesCS5B01G423000 chr5A 83.550 614 81 14 1531 2127 607588101 607587491 1.870000e-154 556.0
26 TraesCS5B01G423000 chr5A 84.173 556 59 14 32 579 607599640 607599106 4.110000e-141 512.0
27 TraesCS5B01G423000 chr5A 90.031 321 32 0 2160 2480 607578633 607578313 3.310000e-112 416.0
28 TraesCS5B01G423000 chr5A 86.611 239 23 6 2623 2858 607578241 607578009 7.640000e-64 255.0
29 TraesCS5B01G423000 chr3A 78.686 1126 174 42 2672 3746 57515768 57516878 0.000000e+00 689.0
30 TraesCS5B01G423000 chr3A 79.944 708 119 12 2992 3681 100353338 100354040 3.200000e-137 499.0
31 TraesCS5B01G423000 chr3A 85.644 202 19 7 4500 4699 110782876 110782683 2.810000e-48 204.0
32 TraesCS5B01G423000 chr6B 77.573 1195 219 39 2992 4173 503007505 503008663 0.000000e+00 676.0
33 TraesCS5B01G423000 chr7B 80.570 772 130 18 1718 2473 618762319 618761552 1.440000e-160 577.0
34 TraesCS5B01G423000 chr7B 84.722 72 11 0 5167 5238 383713836 383713765 8.260000e-09 73.1
35 TraesCS5B01G423000 chr3B 84.577 201 23 6 4500 4699 166160593 166160786 6.080000e-45 193.0
36 TraesCS5B01G423000 chr4A 88.535 157 14 4 5486 5641 660080844 660080691 2.830000e-43 187.0
37 TraesCS5B01G423000 chr3D 84.080 201 24 6 4500 4699 114671377 114671184 2.830000e-43 187.0
38 TraesCS5B01G423000 chr6A 95.946 74 3 0 5156 5229 383961859 383961786 2.910000e-23 121.0
39 TraesCS5B01G423000 chr7A 91.139 79 7 0 5156 5234 581152532 581152610 2.260000e-19 108.0
40 TraesCS5B01G423000 chr6D 90.541 74 5 1 5156 5229 83772671 83772742 4.900000e-16 97.1
41 TraesCS5B01G423000 chr6D 83.544 79 8 1 5156 5234 81764834 81764907 1.070000e-07 69.4
42 TraesCS5B01G423000 chr2D 88.608 79 5 2 5156 5234 593685764 593685690 6.340000e-15 93.5
43 TraesCS5B01G423000 chr2D 83.544 79 8 4 5156 5234 593685694 593685767 1.070000e-07 69.4
44 TraesCS5B01G423000 chr2A 84.884 86 10 2 5154 5238 447639797 447639714 3.820000e-12 84.2
45 TraesCS5B01G423000 chr2A 87.500 72 9 0 5167 5238 454473530 454473601 3.820000e-12 84.2
46 TraesCS5B01G423000 chr7D 82.500 80 12 2 585 662 226688542 226688621 1.070000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G423000 chr5B 599120009 599125951 5942 True 10975.000000 10975 100.000000 1 5943 1 chr5B.!!$R2 5942
1 TraesCS5B01G423000 chr5B 598753628 598756916 3288 True 4313.000000 4313 90.386000 1533 4839 1 chr5B.!!$R1 3306
2 TraesCS5B01G423000 chr5B 598657699 598660495 2796 True 1008.666667 1712 87.042667 1533 4320 3 chr5B.!!$R3 2787
3 TraesCS5B01G423000 chr5D 487004664 487008134 3470 False 2207.500000 4041 87.704500 1533 5090 2 chr5D.!!$F1 3557
4 TraesCS5B01G423000 chr5D 487171556 487176968 5412 True 2031.333333 3661 87.539667 26 4995 3 chr5D.!!$R4 4969
5 TraesCS5B01G423000 chr5D 486896806 486899595 2789 True 1042.000000 1749 87.707667 1526 4320 3 chr5D.!!$R1 2794
6 TraesCS5B01G423000 chr5D 486907440 486910187 2747 True 1026.000000 1705 87.639333 1526 4253 3 chr5D.!!$R2 2727
7 TraesCS5B01G423000 chr5D 487166877 487167420 543 True 243.666667 292 90.034000 5318 5932 3 chr5D.!!$R3 614
8 TraesCS5B01G423000 chr5A 607593966 607599640 5674 True 1364.000000 2385 89.810000 32 4397 4 chr5A.!!$R4 4365
9 TraesCS5B01G423000 chr5A 607576508 607578633 2125 True 811.666667 1764 88.470333 2160 4320 3 chr5A.!!$R3 2160
10 TraesCS5B01G423000 chr5A 67520937 67521961 1024 True 606.000000 606 77.979000 3002 4019 1 chr5A.!!$R1 1017
11 TraesCS5B01G423000 chr5A 607587491 607588101 610 True 556.000000 556 83.550000 1531 2127 1 chr5A.!!$R2 596
12 TraesCS5B01G423000 chr3A 57515768 57516878 1110 False 689.000000 689 78.686000 2672 3746 1 chr3A.!!$F1 1074
13 TraesCS5B01G423000 chr3A 100353338 100354040 702 False 499.000000 499 79.944000 2992 3681 1 chr3A.!!$F2 689
14 TraesCS5B01G423000 chr6B 503007505 503008663 1158 False 676.000000 676 77.573000 2992 4173 1 chr6B.!!$F1 1181
15 TraesCS5B01G423000 chr7B 618761552 618762319 767 True 577.000000 577 80.570000 1718 2473 1 chr7B.!!$R2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 2237 0.037447 GCTCTTCCTCAAACTGGGCT 59.963 55.0 0.00 0.0 0.00 5.19 F
1388 2887 0.181587 TTTTCACGAGGCAGGGAACA 59.818 50.0 0.00 0.0 32.58 3.18 F
2031 3559 0.251341 GACCATGGTTGCTGGGACTT 60.251 55.0 20.85 0.0 38.14 3.01 F
3264 4893 0.381089 CTGAGCAGCTATTTGGCAGC 59.619 55.0 0.00 0.0 43.47 5.25 F
4167 6256 0.178953 AGCTGTCCCAAATGCTGGTT 60.179 50.0 0.00 0.0 44.76 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 3541 0.540365 CAAGTCCCAGCAACCATGGT 60.540 55.000 13.00 13.00 35.96 3.55 R
2995 4623 1.398692 TGGCTCACAACCTTCAAACC 58.601 50.000 0.00 0.00 0.00 3.27 R
3453 5521 1.202818 ACTTTCTCAGTCAGTTGCCCC 60.203 52.381 0.00 0.00 0.00 5.80 R
4538 6635 0.179029 AAACCACAGGAACCTCCGTG 60.179 55.000 9.35 9.35 42.75 4.94 R
5631 7754 0.038166 ATTTGTGCTCGATGGGGTGT 59.962 50.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.357161 CACTCTTACATAAGAAGGGAGTACTAT 57.643 37.037 0.00 0.00 41.37 2.12
308 317 6.761099 AGATAACTGAGATACGTGAACACT 57.239 37.500 0.00 0.00 0.00 3.55
321 331 9.584839 GATACGTGAACACTTTTTAAAATACGT 57.415 29.630 0.55 11.55 42.61 3.57
354 364 6.627395 ATCTACAAAAATGGTTCACGACAA 57.373 33.333 0.00 0.00 0.00 3.18
356 366 4.974368 ACAAAAATGGTTCACGACAAGA 57.026 36.364 0.00 0.00 0.00 3.02
380 390 1.115467 CTCGCCTAGTCCCATGTTCT 58.885 55.000 0.00 0.00 0.00 3.01
394 404 4.096984 CCCATGTTCTATTTTGAGCCAGTC 59.903 45.833 0.00 0.00 0.00 3.51
411 421 6.245408 AGCCAGTCCTTCATATTTTTGTACA 58.755 36.000 0.00 0.00 0.00 2.90
412 422 6.719370 AGCCAGTCCTTCATATTTTTGTACAA 59.281 34.615 3.59 3.59 0.00 2.41
522 533 7.891498 ATGGACCATAGTATTTTGGGTTAAC 57.109 36.000 4.75 0.00 37.32 2.01
523 534 5.881443 TGGACCATAGTATTTTGGGTTAACG 59.119 40.000 0.00 0.00 37.32 3.18
538 549 7.756395 TGGGTTAACGTTTGACCATAAATTA 57.244 32.000 25.53 8.06 35.11 1.40
678 730 5.811100 CCCAGACGGAAGAAAGACTATTTAC 59.189 44.000 0.00 0.00 0.00 2.01
682 734 6.014840 AGACGGAAGAAAGACTATTTACCACA 60.015 38.462 0.00 0.00 0.00 4.17
683 735 6.708285 ACGGAAGAAAGACTATTTACCACAT 58.292 36.000 0.00 0.00 0.00 3.21
710 762 4.229096 CGTCAAACAGGATTTGTCATTGG 58.771 43.478 0.00 0.00 39.73 3.16
711 763 3.989817 GTCAAACAGGATTTGTCATTGGC 59.010 43.478 0.00 0.00 39.73 4.52
774 2224 1.446966 GTGGGCTCGACTGCTCTTC 60.447 63.158 0.00 0.00 33.90 2.87
787 2237 0.037447 GCTCTTCCTCAAACTGGGCT 59.963 55.000 0.00 0.00 0.00 5.19
908 2364 2.432628 CGGGTTGGACTCGAGTGC 60.433 66.667 28.10 28.10 46.98 4.40
1130 2594 2.637383 GGCGAACTGGGACTCGAGT 61.637 63.158 20.18 20.18 37.23 4.18
1132 2596 1.444553 CGAACTGGGACTCGAGTGC 60.445 63.158 27.10 27.10 37.23 4.40
1331 2829 8.618240 TCCTCCTCTTATAATTACAACTTGGA 57.382 34.615 0.00 0.00 0.00 3.53
1332 2830 8.483758 TCCTCCTCTTATAATTACAACTTGGAC 58.516 37.037 0.00 0.00 0.00 4.02
1388 2887 0.181587 TTTTCACGAGGCAGGGAACA 59.818 50.000 0.00 0.00 32.58 3.18
1423 2922 9.630098 TTATGATCTTTGAGCAAAGTTTGATTC 57.370 29.630 19.82 14.93 45.88 2.52
1432 2931 4.162131 AGCAAAGTTTGATTCCAACAAGGT 59.838 37.500 19.82 0.00 39.02 3.50
1441 2940 4.584325 TGATTCCAACAAGGTTTTCCAGAG 59.416 41.667 0.00 0.00 43.73 3.35
1622 3126 1.071385 GGGACCTATGATCCACTGCTG 59.929 57.143 0.00 0.00 38.06 4.41
1648 3152 1.021202 CGGGTTGTGCAAAGAACTGA 58.979 50.000 0.00 0.00 0.00 3.41
1649 3153 1.608590 CGGGTTGTGCAAAGAACTGAT 59.391 47.619 0.00 0.00 0.00 2.90
1650 3154 2.605338 CGGGTTGTGCAAAGAACTGATG 60.605 50.000 0.00 0.00 0.00 3.07
1651 3155 2.622942 GGGTTGTGCAAAGAACTGATGA 59.377 45.455 0.00 0.00 0.00 2.92
1710 3232 1.135083 GGCGAGAGATCGAACCTTTCA 60.135 52.381 1.17 0.00 34.64 2.69
1976 3504 2.352805 GGCAAGGTACCTGCTGCT 59.647 61.111 29.07 7.79 32.23 4.24
2013 3541 1.453379 GTGGAGATCGACCTCGGGA 60.453 63.158 0.00 0.00 40.29 5.14
2031 3559 0.251341 GACCATGGTTGCTGGGACTT 60.251 55.000 20.85 0.00 38.14 3.01
2368 3902 1.733912 GCAGTTCGAACAGCATCATGA 59.266 47.619 32.76 0.00 40.63 3.07
2404 3938 1.793134 GCTGCTCTTGTTGCTGCTGT 61.793 55.000 0.00 0.00 46.79 4.40
2509 4048 9.528489 ACTACATATGGTCTTTTGTGGTTATTT 57.472 29.630 7.80 0.00 30.81 1.40
2513 4052 9.927668 CATATGGTCTTTTGTGGTTATTTTCTT 57.072 29.630 0.00 0.00 0.00 2.52
2584 4131 2.887152 GACTGTGATTTCAAGGGCAAGT 59.113 45.455 0.00 0.00 0.00 3.16
2603 4155 2.368875 AGTATATTGAGCCCCGTGAAGG 59.631 50.000 0.00 0.00 40.63 3.46
2610 4164 2.295602 GCCCCGTGAAGGACCCTTA 61.296 63.158 0.56 0.00 45.00 2.69
2613 4167 1.283905 CCCCGTGAAGGACCCTTATTT 59.716 52.381 0.56 0.00 45.00 1.40
2722 4280 6.073819 GCAATTTTTCTTTTATGCCGAGTTGT 60.074 34.615 0.00 0.00 0.00 3.32
2926 4545 5.180304 TGATGTCGCACAAGTAAGCATTTTA 59.820 36.000 0.00 0.00 0.00 1.52
2995 4623 7.616103 TGCAAATTCTAACGTTAACATTGTG 57.384 32.000 9.68 11.09 0.00 3.33
3056 4684 1.627329 TGCACTTGAGCAAGAGGAGAT 59.373 47.619 16.47 0.00 42.46 2.75
3264 4893 0.381089 CTGAGCAGCTATTTGGCAGC 59.619 55.000 0.00 0.00 43.47 5.25
3453 5521 2.353323 CATGATGGCTATGATGACGGG 58.647 52.381 3.35 0.00 30.48 5.28
3477 5545 4.503296 GGGCAACTGACTGAGAAAGTTAGA 60.503 45.833 4.50 0.00 43.58 2.10
3714 5782 4.554723 CGTGACCTTTTGATGAAACAGGTC 60.555 45.833 21.03 21.03 42.46 3.85
3758 5827 2.616842 TGAAGGCTCGGAAAACACTTTC 59.383 45.455 0.00 0.00 40.31 2.62
4001 6073 4.127171 CGGAATCATACAACCCAGTAAGG 58.873 47.826 0.00 0.00 37.03 2.69
4007 6082 0.400594 ACAACCCAGTAAGGACAGCC 59.599 55.000 0.00 0.00 41.22 4.85
4167 6256 0.178953 AGCTGTCCCAAATGCTGGTT 60.179 50.000 0.00 0.00 44.76 3.67
4210 6299 2.679336 TCGACAATCACCATTGATGCTG 59.321 45.455 1.73 0.00 42.00 4.41
4232 6321 2.796383 CGGACGACAGGAATAAGCTCAG 60.796 54.545 0.00 0.00 0.00 3.35
4237 6326 5.138276 ACGACAGGAATAAGCTCAGGTATA 58.862 41.667 0.00 0.00 0.00 1.47
4243 6332 8.989131 ACAGGAATAAGCTCAGGTATAAAGTAA 58.011 33.333 0.00 0.00 0.00 2.24
4254 6346 6.071221 TCAGGTATAAAGTAACGAAGAAGGCA 60.071 38.462 0.00 0.00 0.00 4.75
4264 6356 1.609061 CGAAGAAGGCAGAGCTTTCCA 60.609 52.381 9.78 0.00 44.04 3.53
4286 6378 1.270785 TGTCATCTGCAACACCGACAT 60.271 47.619 0.00 0.00 0.00 3.06
4299 6391 1.441729 CGACATCGGTGGTATGGCT 59.558 57.895 0.00 0.00 35.37 4.75
4324 6416 3.684788 CGTGGTGAGTCCCATAAAAAGAG 59.315 47.826 3.97 0.00 36.74 2.85
4348 6440 0.457851 CTCTCTGTTAGCGAGGGTGG 59.542 60.000 0.00 0.00 0.00 4.61
4350 6442 2.125106 CTGTTAGCGAGGGTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
4444 6536 2.344741 GGAAAGCTAAACTCACGCTACG 59.655 50.000 0.00 0.00 32.90 3.51
4468 6560 7.014326 ACGACTAATATGAGCAATTCCTCTGTA 59.986 37.037 0.00 0.00 33.02 2.74
4474 6566 3.274288 GAGCAATTCCTCTGTACTTGGG 58.726 50.000 0.00 0.00 0.00 4.12
4478 6570 3.636153 ATTCCTCTGTACTTGGGAAGC 57.364 47.619 15.23 0.00 40.53 3.86
4489 6586 4.917906 ACTTGGGAAGCTCAACTCTAAT 57.082 40.909 0.00 0.00 0.00 1.73
4495 6592 4.039852 GGGAAGCTCAACTCTAATAGGAGG 59.960 50.000 0.00 0.00 37.63 4.30
4496 6593 4.651962 GGAAGCTCAACTCTAATAGGAGGT 59.348 45.833 0.00 0.00 37.88 3.85
4497 6594 5.129650 GGAAGCTCAACTCTAATAGGAGGTT 59.870 44.000 7.93 7.93 45.68 3.50
4498 6595 6.352308 GGAAGCTCAACTCTAATAGGAGGTTT 60.352 42.308 9.07 0.00 43.80 3.27
4557 6654 0.179029 CACGGAGGTTCCTGTGGTTT 60.179 55.000 0.00 0.00 37.39 3.27
4558 6655 0.549469 ACGGAGGTTCCTGTGGTTTT 59.451 50.000 0.00 0.00 33.30 2.43
4559 6656 1.235724 CGGAGGTTCCTGTGGTTTTC 58.764 55.000 0.00 0.00 33.30 2.29
4560 6657 1.202770 CGGAGGTTCCTGTGGTTTTCT 60.203 52.381 0.00 0.00 33.30 2.52
4561 6658 2.230660 GGAGGTTCCTGTGGTTTTCTG 58.769 52.381 0.00 0.00 32.53 3.02
4562 6659 2.230660 GAGGTTCCTGTGGTTTTCTGG 58.769 52.381 0.00 0.00 0.00 3.86
4563 6660 1.133482 AGGTTCCTGTGGTTTTCTGGG 60.133 52.381 0.00 0.00 0.00 4.45
4564 6661 1.133606 GGTTCCTGTGGTTTTCTGGGA 60.134 52.381 0.00 0.00 0.00 4.37
4565 6662 2.661718 GTTCCTGTGGTTTTCTGGGAA 58.338 47.619 0.00 0.00 0.00 3.97
4566 6663 3.028130 GTTCCTGTGGTTTTCTGGGAAA 58.972 45.455 0.00 0.00 35.11 3.13
4567 6664 2.661718 TCCTGTGGTTTTCTGGGAAAC 58.338 47.619 0.00 0.00 38.49 2.78
4581 6681 4.021719 TCTGGGAAACTACCTTTACAGTCG 60.022 45.833 0.00 0.00 32.52 4.18
4665 6782 6.127619 GGAATTTGAAATCCAACTACCTCCTG 60.128 42.308 0.00 0.00 35.71 3.86
4666 6783 4.993705 TTGAAATCCAACTACCTCCTGT 57.006 40.909 0.00 0.00 0.00 4.00
4667 6784 6.442541 TTTGAAATCCAACTACCTCCTGTA 57.557 37.500 0.00 0.00 33.85 2.74
4679 6796 6.622833 CTACCTCCTGTAGCTTTAGTAGAC 57.377 45.833 0.00 0.00 40.53 2.59
4680 6797 4.279982 ACCTCCTGTAGCTTTAGTAGACC 58.720 47.826 0.00 0.00 0.00 3.85
4681 6798 4.017314 ACCTCCTGTAGCTTTAGTAGACCT 60.017 45.833 0.00 0.00 0.00 3.85
4682 6799 4.339814 CCTCCTGTAGCTTTAGTAGACCTG 59.660 50.000 0.00 0.00 0.00 4.00
4683 6800 4.931914 TCCTGTAGCTTTAGTAGACCTGT 58.068 43.478 0.00 0.00 0.00 4.00
4684 6801 6.070951 TCCTGTAGCTTTAGTAGACCTGTA 57.929 41.667 0.00 0.00 0.00 2.74
4700 6817 7.811117 AGACCTGTAAGTCAGTAGATGATAC 57.189 40.000 0.00 0.00 40.92 2.24
4714 6831 8.370940 CAGTAGATGATACCCATTGTTCTGTAT 58.629 37.037 0.00 0.00 35.17 2.29
4726 6843 7.824289 CCCATTGTTCTGTATCTTTAGACTTCA 59.176 37.037 0.00 0.00 0.00 3.02
4777 6894 6.543100 TGCATTAGTGACATTGCAGATATTGA 59.457 34.615 3.52 0.00 39.98 2.57
4779 6896 7.537649 GCATTAGTGACATTGCAGATATTGATG 59.462 37.037 0.00 0.00 35.22 3.07
4794 6914 1.379044 GATGTTCTGGGGCTGTGGG 60.379 63.158 0.00 0.00 0.00 4.61
4795 6915 2.843912 GATGTTCTGGGGCTGTGGGG 62.844 65.000 0.00 0.00 0.00 4.96
4824 6944 4.592485 CCGTAGAGGCAGATTGAAGTAT 57.408 45.455 0.00 0.00 0.00 2.12
4825 6945 4.950050 CCGTAGAGGCAGATTGAAGTATT 58.050 43.478 0.00 0.00 0.00 1.89
4842 6962 6.149973 TGAAGTATTTCTTGCTCACAATCCAG 59.850 38.462 0.00 0.00 36.40 3.86
4857 6977 5.521735 CACAATCCAGTCATAGAGCAAGTAC 59.478 44.000 0.00 0.00 0.00 2.73
4944 7064 7.362142 GGGCAACTCCTAAAAATAGTTTGAGAG 60.362 40.741 1.40 5.23 31.21 3.20
4946 7066 6.969828 ACTCCTAAAAATAGTTTGAGAGCG 57.030 37.500 1.40 0.00 27.32 5.03
4987 7108 5.047802 CCAAGAATTACATGTCTGGCTGTTT 60.048 40.000 0.00 0.00 0.00 2.83
4989 7110 7.148018 CCAAGAATTACATGTCTGGCTGTTTAT 60.148 37.037 0.00 0.00 0.00 1.40
5003 7124 7.227314 TCTGGCTGTTTATCAAATATGCTACAG 59.773 37.037 0.00 0.00 0.00 2.74
5007 7128 9.956720 GCTGTTTATCAAATATGCTACAGAAAT 57.043 29.630 0.00 0.00 0.00 2.17
5037 7159 4.690122 ACATGTACAGTTAATCTACCGCC 58.310 43.478 0.00 0.00 0.00 6.13
5038 7160 3.425577 TGTACAGTTAATCTACCGCCG 57.574 47.619 0.00 0.00 0.00 6.46
5045 7167 0.825410 TAATCTACCGCCGGAAAGCA 59.175 50.000 11.71 0.00 0.00 3.91
5054 7176 1.335872 CGCCGGAAAGCAAAATCTTGT 60.336 47.619 5.05 0.00 34.79 3.16
5055 7177 2.328473 GCCGGAAAGCAAAATCTTGTC 58.672 47.619 5.05 0.00 34.79 3.18
5090 7212 7.359595 TCAACAAAATTTCAGTATTGTCGAGG 58.640 34.615 0.00 0.00 35.09 4.63
5091 7213 5.699839 ACAAAATTTCAGTATTGTCGAGGC 58.300 37.500 0.00 0.00 30.58 4.70
5092 7214 4.965119 AAATTTCAGTATTGTCGAGGCC 57.035 40.909 0.00 0.00 0.00 5.19
5093 7215 3.914426 ATTTCAGTATTGTCGAGGCCT 57.086 42.857 3.86 3.86 0.00 5.19
5094 7216 2.672961 TTCAGTATTGTCGAGGCCTG 57.327 50.000 12.00 2.19 0.00 4.85
5095 7217 0.175760 TCAGTATTGTCGAGGCCTGC 59.824 55.000 12.00 0.00 0.00 4.85
5096 7218 0.176680 CAGTATTGTCGAGGCCTGCT 59.823 55.000 12.00 0.00 0.00 4.24
5097 7219 0.905357 AGTATTGTCGAGGCCTGCTT 59.095 50.000 12.00 0.00 0.00 3.91
5098 7220 1.279271 AGTATTGTCGAGGCCTGCTTT 59.721 47.619 12.00 0.00 0.00 3.51
5099 7221 2.500098 AGTATTGTCGAGGCCTGCTTTA 59.500 45.455 12.00 0.00 0.00 1.85
5100 7222 2.029838 ATTGTCGAGGCCTGCTTTAG 57.970 50.000 12.00 0.00 0.00 1.85
5101 7223 0.973632 TTGTCGAGGCCTGCTTTAGA 59.026 50.000 12.00 0.00 0.00 2.10
5102 7224 0.532573 TGTCGAGGCCTGCTTTAGAG 59.467 55.000 12.00 0.00 0.00 2.43
5103 7225 0.179097 GTCGAGGCCTGCTTTAGAGG 60.179 60.000 12.00 0.00 0.00 3.69
5104 7226 0.614979 TCGAGGCCTGCTTTAGAGGT 60.615 55.000 12.00 0.00 32.60 3.85
5105 7227 0.179097 CGAGGCCTGCTTTAGAGGTC 60.179 60.000 12.00 0.00 35.21 3.85
5106 7228 0.179097 GAGGCCTGCTTTAGAGGTCG 60.179 60.000 12.00 0.00 40.42 4.79
5107 7229 0.905337 AGGCCTGCTTTAGAGGTCGT 60.905 55.000 3.11 0.00 40.42 4.34
5108 7230 0.036294 GGCCTGCTTTAGAGGTCGTT 60.036 55.000 0.00 0.00 32.60 3.85
5109 7231 1.079503 GCCTGCTTTAGAGGTCGTTG 58.920 55.000 0.00 0.00 32.60 4.10
5110 7232 1.079503 CCTGCTTTAGAGGTCGTTGC 58.920 55.000 0.00 0.00 0.00 4.17
5111 7233 1.338200 CCTGCTTTAGAGGTCGTTGCT 60.338 52.381 0.00 0.00 0.00 3.91
5112 7234 1.728971 CTGCTTTAGAGGTCGTTGCTG 59.271 52.381 0.00 0.00 0.00 4.41
5113 7235 1.070134 TGCTTTAGAGGTCGTTGCTGT 59.930 47.619 0.00 0.00 0.00 4.40
5114 7236 2.143925 GCTTTAGAGGTCGTTGCTGTT 58.856 47.619 0.00 0.00 0.00 3.16
5115 7237 2.548480 GCTTTAGAGGTCGTTGCTGTTT 59.452 45.455 0.00 0.00 0.00 2.83
5116 7238 3.003378 GCTTTAGAGGTCGTTGCTGTTTT 59.997 43.478 0.00 0.00 0.00 2.43
5117 7239 4.497507 GCTTTAGAGGTCGTTGCTGTTTTT 60.498 41.667 0.00 0.00 0.00 1.94
5118 7240 5.277634 GCTTTAGAGGTCGTTGCTGTTTTTA 60.278 40.000 0.00 0.00 0.00 1.52
5119 7241 6.567891 GCTTTAGAGGTCGTTGCTGTTTTTAT 60.568 38.462 0.00 0.00 0.00 1.40
5120 7242 4.749245 AGAGGTCGTTGCTGTTTTTATG 57.251 40.909 0.00 0.00 0.00 1.90
5121 7243 3.058224 AGAGGTCGTTGCTGTTTTTATGC 60.058 43.478 0.00 0.00 0.00 3.14
5122 7244 2.621055 AGGTCGTTGCTGTTTTTATGCA 59.379 40.909 0.00 0.00 34.69 3.96
5123 7245 3.255642 AGGTCGTTGCTGTTTTTATGCAT 59.744 39.130 3.79 3.79 36.55 3.96
5124 7246 3.608073 GGTCGTTGCTGTTTTTATGCATC 59.392 43.478 0.19 0.00 36.55 3.91
5125 7247 4.225984 GTCGTTGCTGTTTTTATGCATCA 58.774 39.130 0.19 0.00 36.55 3.07
5126 7248 4.679197 GTCGTTGCTGTTTTTATGCATCAA 59.321 37.500 0.19 0.00 36.55 2.57
5127 7249 5.345741 GTCGTTGCTGTTTTTATGCATCAAT 59.654 36.000 0.19 0.00 36.55 2.57
5128 7250 5.925397 TCGTTGCTGTTTTTATGCATCAATT 59.075 32.000 0.19 0.00 36.55 2.32
5129 7251 6.423302 TCGTTGCTGTTTTTATGCATCAATTT 59.577 30.769 0.19 0.00 36.55 1.82
5130 7252 7.042187 TCGTTGCTGTTTTTATGCATCAATTTT 60.042 29.630 0.19 0.00 36.55 1.82
5131 7253 7.058580 CGTTGCTGTTTTTATGCATCAATTTTG 59.941 33.333 0.19 0.00 36.55 2.44
5132 7254 7.725818 TGCTGTTTTTATGCATCAATTTTGA 57.274 28.000 0.19 0.00 42.14 2.69
5133 7255 8.151141 TGCTGTTTTTATGCATCAATTTTGAA 57.849 26.923 0.19 0.00 41.13 2.69
5134 7256 8.283992 TGCTGTTTTTATGCATCAATTTTGAAG 58.716 29.630 0.19 0.00 41.13 3.02
5135 7257 8.497554 GCTGTTTTTATGCATCAATTTTGAAGA 58.502 29.630 0.19 0.00 41.13 2.87
5136 7258 9.801714 CTGTTTTTATGCATCAATTTTGAAGAC 57.198 29.630 0.19 0.00 41.13 3.01
5137 7259 9.322773 TGTTTTTATGCATCAATTTTGAAGACA 57.677 25.926 0.19 0.00 41.13 3.41
5143 7265 7.789273 TGCATCAATTTTGAAGACATTTTGT 57.211 28.000 0.00 0.00 41.13 2.83
5144 7266 8.883954 TGCATCAATTTTGAAGACATTTTGTA 57.116 26.923 0.00 0.00 41.13 2.41
5145 7267 8.980610 TGCATCAATTTTGAAGACATTTTGTAG 58.019 29.630 0.00 0.00 41.13 2.74
5146 7268 9.195411 GCATCAATTTTGAAGACATTTTGTAGA 57.805 29.630 0.00 0.00 41.13 2.59
5178 7300 6.875076 ACTCTGCAAACTAATATAAGACCGT 58.125 36.000 0.00 0.00 0.00 4.83
5179 7301 7.328737 ACTCTGCAAACTAATATAAGACCGTT 58.671 34.615 0.00 0.00 0.00 4.44
5180 7302 7.822822 ACTCTGCAAACTAATATAAGACCGTTT 59.177 33.333 0.00 0.00 0.00 3.60
5181 7303 9.309516 CTCTGCAAACTAATATAAGACCGTTTA 57.690 33.333 0.00 0.00 0.00 2.01
5182 7304 9.309516 TCTGCAAACTAATATAAGACCGTTTAG 57.690 33.333 0.00 0.00 0.00 1.85
5212 7334 9.406113 ACTACTTTAGTGATCTATAAACGGTCT 57.594 33.333 0.00 0.00 37.69 3.85
5231 7353 9.760077 AACGGTCTTATATTAGTTTACAGATGG 57.240 33.333 0.00 0.00 0.00 3.51
5232 7354 9.139734 ACGGTCTTATATTAGTTTACAGATGGA 57.860 33.333 0.00 0.00 0.00 3.41
5233 7355 9.627395 CGGTCTTATATTAGTTTACAGATGGAG 57.373 37.037 0.00 0.00 0.00 3.86
5234 7356 9.425577 GGTCTTATATTAGTTTACAGATGGAGC 57.574 37.037 0.00 0.00 0.00 4.70
5235 7357 9.130312 GTCTTATATTAGTTTACAGATGGAGCG 57.870 37.037 0.00 0.00 0.00 5.03
5236 7358 7.813148 TCTTATATTAGTTTACAGATGGAGCGC 59.187 37.037 0.00 0.00 0.00 5.92
5237 7359 3.603158 TTAGTTTACAGATGGAGCGCA 57.397 42.857 11.47 0.00 0.00 6.09
5238 7360 2.698855 AGTTTACAGATGGAGCGCAT 57.301 45.000 11.47 0.00 0.00 4.73
5239 7361 2.283298 AGTTTACAGATGGAGCGCATG 58.717 47.619 11.47 0.36 0.00 4.06
5240 7362 1.331756 GTTTACAGATGGAGCGCATGG 59.668 52.381 11.47 0.00 0.00 3.66
5241 7363 0.541392 TTACAGATGGAGCGCATGGT 59.459 50.000 11.47 0.00 0.00 3.55
5242 7364 0.541392 TACAGATGGAGCGCATGGTT 59.459 50.000 11.47 0.00 0.00 3.67
5243 7365 1.028330 ACAGATGGAGCGCATGGTTG 61.028 55.000 11.47 3.04 0.00 3.77
5244 7366 1.028330 CAGATGGAGCGCATGGTTGT 61.028 55.000 11.47 0.00 0.00 3.32
5245 7367 0.322816 AGATGGAGCGCATGGTTGTT 60.323 50.000 11.47 0.00 0.00 2.83
5246 7368 0.527565 GATGGAGCGCATGGTTGTTT 59.472 50.000 11.47 0.00 0.00 2.83
5247 7369 0.968405 ATGGAGCGCATGGTTGTTTT 59.032 45.000 11.47 0.00 0.00 2.43
5248 7370 0.749649 TGGAGCGCATGGTTGTTTTT 59.250 45.000 11.47 0.00 0.00 1.94
5249 7371 1.957177 TGGAGCGCATGGTTGTTTTTA 59.043 42.857 11.47 0.00 0.00 1.52
5250 7372 2.560542 TGGAGCGCATGGTTGTTTTTAT 59.439 40.909 11.47 0.00 0.00 1.40
5251 7373 2.923020 GGAGCGCATGGTTGTTTTTATG 59.077 45.455 11.47 0.00 0.00 1.90
5252 7374 2.336667 AGCGCATGGTTGTTTTTATGC 58.663 42.857 11.47 0.00 41.76 3.14
5253 7375 2.064762 GCGCATGGTTGTTTTTATGCA 58.935 42.857 0.30 0.00 44.54 3.96
5254 7376 2.672381 GCGCATGGTTGTTTTTATGCAT 59.328 40.909 0.30 3.79 44.54 3.96
5255 7377 3.242059 GCGCATGGTTGTTTTTATGCATC 60.242 43.478 0.19 0.00 44.54 3.91
5256 7378 3.925299 CGCATGGTTGTTTTTATGCATCA 59.075 39.130 0.19 0.00 44.54 3.07
5257 7379 4.031991 CGCATGGTTGTTTTTATGCATCAG 59.968 41.667 0.19 0.00 44.54 2.90
5258 7380 4.931002 GCATGGTTGTTTTTATGCATCAGT 59.069 37.500 0.19 0.00 43.93 3.41
5259 7381 5.409214 GCATGGTTGTTTTTATGCATCAGTT 59.591 36.000 0.19 0.00 43.93 3.16
5260 7382 6.073112 GCATGGTTGTTTTTATGCATCAGTTT 60.073 34.615 0.19 0.00 43.93 2.66
5261 7383 7.520292 GCATGGTTGTTTTTATGCATCAGTTTT 60.520 33.333 0.19 0.00 43.93 2.43
5262 7384 7.856145 TGGTTGTTTTTATGCATCAGTTTTT 57.144 28.000 0.19 0.00 0.00 1.94
5263 7385 8.948631 TGGTTGTTTTTATGCATCAGTTTTTA 57.051 26.923 0.19 0.00 0.00 1.52
5264 7386 9.383519 TGGTTGTTTTTATGCATCAGTTTTTAA 57.616 25.926 0.19 0.00 0.00 1.52
5265 7387 9.862585 GGTTGTTTTTATGCATCAGTTTTTAAG 57.137 29.630 0.19 0.00 0.00 1.85
5266 7388 9.368921 GTTGTTTTTATGCATCAGTTTTTAAGC 57.631 29.630 0.19 0.00 0.00 3.09
5267 7389 8.082334 TGTTTTTATGCATCAGTTTTTAAGCC 57.918 30.769 0.19 0.00 0.00 4.35
5268 7390 7.712639 TGTTTTTATGCATCAGTTTTTAAGCCA 59.287 29.630 0.19 0.00 0.00 4.75
5269 7391 8.720562 GTTTTTATGCATCAGTTTTTAAGCCAT 58.279 29.630 0.19 0.00 0.00 4.40
5270 7392 8.845413 TTTTATGCATCAGTTTTTAAGCCATT 57.155 26.923 0.19 0.00 0.00 3.16
5271 7393 9.935241 TTTTATGCATCAGTTTTTAAGCCATTA 57.065 25.926 0.19 0.00 0.00 1.90
5273 7395 9.531942 TTATGCATCAGTTTTTAAGCCATTATG 57.468 29.630 0.19 0.00 0.00 1.90
5274 7396 7.167924 TGCATCAGTTTTTAAGCCATTATGA 57.832 32.000 0.00 0.00 0.00 2.15
5275 7397 7.609960 TGCATCAGTTTTTAAGCCATTATGAA 58.390 30.769 0.00 0.00 0.00 2.57
5276 7398 7.760794 TGCATCAGTTTTTAAGCCATTATGAAG 59.239 33.333 0.00 0.00 0.00 3.02
5277 7399 7.975616 GCATCAGTTTTTAAGCCATTATGAAGA 59.024 33.333 0.00 0.00 0.00 2.87
5278 7400 9.512435 CATCAGTTTTTAAGCCATTATGAAGAG 57.488 33.333 0.00 0.00 0.00 2.85
5279 7401 8.862325 TCAGTTTTTAAGCCATTATGAAGAGA 57.138 30.769 0.00 0.00 0.00 3.10
5280 7402 9.466497 TCAGTTTTTAAGCCATTATGAAGAGAT 57.534 29.630 0.00 0.00 0.00 2.75
5301 7423 9.469097 AGAGATATACATAATACTCAGTGTCCC 57.531 37.037 0.00 0.00 0.00 4.46
5302 7424 9.244292 GAGATATACATAATACTCAGTGTCCCA 57.756 37.037 0.00 0.00 0.00 4.37
5303 7425 9.775539 AGATATACATAATACTCAGTGTCCCAT 57.224 33.333 0.00 0.00 0.00 4.00
5308 7430 8.958060 ACATAATACTCAGTGTCCCATATAGT 57.042 34.615 0.00 0.00 0.00 2.12
5313 7435 9.742144 AATACTCAGTGTCCCATATAGTACTAG 57.258 37.037 8.85 0.00 0.00 2.57
5314 7436 7.390013 ACTCAGTGTCCCATATAGTACTAGA 57.610 40.000 8.85 3.97 0.00 2.43
5315 7437 7.813331 ACTCAGTGTCCCATATAGTACTAGAA 58.187 38.462 8.85 0.00 0.00 2.10
5316 7438 8.449625 ACTCAGTGTCCCATATAGTACTAGAAT 58.550 37.037 8.85 1.99 0.00 2.40
5325 7447 7.122353 CCCATATAGTACTAGAATAACAGGCGT 59.878 40.741 8.85 0.00 0.00 5.68
5351 7473 1.141881 CGCGCCTAGTGATTGACCT 59.858 57.895 0.00 0.00 0.00 3.85
5352 7474 1.148157 CGCGCCTAGTGATTGACCTG 61.148 60.000 0.00 0.00 0.00 4.00
5355 7477 1.804372 CGCCTAGTGATTGACCTGCTC 60.804 57.143 0.00 0.00 0.00 4.26
5369 7491 1.729470 CTGCTCGTAGCTCCGGTGAT 61.729 60.000 7.92 2.99 42.97 3.06
5375 7497 1.641577 GTAGCTCCGGTGATTGTCAC 58.358 55.000 7.92 1.54 46.23 3.67
5390 7512 6.203530 GTGATTGTCACACTGGTATCATATGG 59.796 42.308 2.13 0.00 46.22 2.74
5401 7523 6.151648 ACTGGTATCATATGGCATAACATTGC 59.848 38.462 11.86 1.14 42.01 3.56
5443 7565 3.632145 ACAAAAGGTTAGCAGTTGAGGTG 59.368 43.478 4.54 0.00 0.00 4.00
5453 7575 2.550855 GCAGTTGAGGTGGATCAAGACA 60.551 50.000 0.00 0.00 39.78 3.41
5477 7599 5.657470 TGAAACAAACGAAGATGACAGAG 57.343 39.130 0.00 0.00 0.00 3.35
5478 7600 5.116180 TGAAACAAACGAAGATGACAGAGT 58.884 37.500 0.00 0.00 0.00 3.24
5479 7601 6.277605 TGAAACAAACGAAGATGACAGAGTA 58.722 36.000 0.00 0.00 0.00 2.59
5480 7602 6.420903 TGAAACAAACGAAGATGACAGAGTAG 59.579 38.462 0.00 0.00 0.00 2.57
5481 7603 5.707242 ACAAACGAAGATGACAGAGTAGA 57.293 39.130 0.00 0.00 0.00 2.59
5482 7604 6.085555 ACAAACGAAGATGACAGAGTAGAA 57.914 37.500 0.00 0.00 0.00 2.10
5483 7605 6.692486 ACAAACGAAGATGACAGAGTAGAAT 58.308 36.000 0.00 0.00 0.00 2.40
5484 7606 7.155328 ACAAACGAAGATGACAGAGTAGAATT 58.845 34.615 0.00 0.00 0.00 2.17
5519 7641 9.220767 GAACATCAGTTGGGAAATATCTATACC 57.779 37.037 0.00 0.00 38.30 2.73
5523 7645 8.275187 TCAGTTGGGAAATATCTATACCATGT 57.725 34.615 0.00 0.00 0.00 3.21
5524 7646 8.156820 TCAGTTGGGAAATATCTATACCATGTG 58.843 37.037 0.00 0.00 0.00 3.21
5525 7647 6.942576 AGTTGGGAAATATCTATACCATGTGC 59.057 38.462 0.00 0.00 0.00 4.57
5526 7648 6.702449 TGGGAAATATCTATACCATGTGCT 57.298 37.500 0.00 0.00 0.00 4.40
5527 7649 7.806680 TGGGAAATATCTATACCATGTGCTA 57.193 36.000 0.00 0.00 0.00 3.49
5528 7650 8.213489 TGGGAAATATCTATACCATGTGCTAA 57.787 34.615 0.00 0.00 0.00 3.09
5529 7651 8.321353 TGGGAAATATCTATACCATGTGCTAAG 58.679 37.037 0.00 0.00 0.00 2.18
5530 7652 7.281100 GGGAAATATCTATACCATGTGCTAAGC 59.719 40.741 0.00 0.00 0.00 3.09
5531 7653 7.824289 GGAAATATCTATACCATGTGCTAAGCA 59.176 37.037 0.00 0.00 35.60 3.91
5543 7665 3.762407 TGCTAAGCACCAGTCTGTTAA 57.238 42.857 0.00 0.00 31.71 2.01
5544 7666 4.079980 TGCTAAGCACCAGTCTGTTAAA 57.920 40.909 0.00 0.00 31.71 1.52
5545 7667 4.065088 TGCTAAGCACCAGTCTGTTAAAG 58.935 43.478 0.00 0.00 31.71 1.85
5546 7668 3.437049 GCTAAGCACCAGTCTGTTAAAGG 59.563 47.826 0.00 0.00 0.00 3.11
5547 7669 3.857157 AAGCACCAGTCTGTTAAAGGA 57.143 42.857 0.00 0.00 0.00 3.36
5548 7670 3.857157 AGCACCAGTCTGTTAAAGGAA 57.143 42.857 0.00 0.00 0.00 3.36
5549 7671 4.164843 AGCACCAGTCTGTTAAAGGAAA 57.835 40.909 0.00 0.00 0.00 3.13
5550 7672 4.729868 AGCACCAGTCTGTTAAAGGAAAT 58.270 39.130 0.00 0.00 0.00 2.17
5584 7706 8.527810 TCATTGTCCAAAAACAATTAGGGTATC 58.472 33.333 0.00 0.00 45.29 2.24
5603 7726 3.026630 TCGTCGAAGTTGAAGCATCTT 57.973 42.857 0.00 0.00 0.00 2.40
5643 7766 1.165270 GAACCAAACACCCCATCGAG 58.835 55.000 0.00 0.00 0.00 4.04
5660 7783 5.323900 CATCGAGCACAAATTAACAATCGT 58.676 37.500 0.00 0.00 0.00 3.73
5668 7791 7.378461 AGCACAAATTAACAATCGTACAAACAG 59.622 33.333 0.00 0.00 0.00 3.16
5669 7792 7.166804 GCACAAATTAACAATCGTACAAACAGT 59.833 33.333 0.00 0.00 0.00 3.55
5680 7803 3.245284 CGTACAAACAGTGTGAGTTGAGG 59.755 47.826 12.09 0.72 41.89 3.86
5697 7820 6.051717 AGTTGAGGTCGATATGGATCAAAAG 58.948 40.000 5.61 0.00 31.78 2.27
5698 7821 5.614324 TGAGGTCGATATGGATCAAAAGT 57.386 39.130 0.52 0.00 31.78 2.66
5699 7822 5.989477 TGAGGTCGATATGGATCAAAAGTT 58.011 37.500 0.52 0.00 31.78 2.66
5700 7823 6.049149 TGAGGTCGATATGGATCAAAAGTTC 58.951 40.000 0.52 0.00 31.78 3.01
5701 7824 5.989477 AGGTCGATATGGATCAAAAGTTCA 58.011 37.500 0.52 0.00 31.78 3.18
5702 7825 6.595682 AGGTCGATATGGATCAAAAGTTCAT 58.404 36.000 0.52 0.00 31.78 2.57
5703 7826 6.484643 AGGTCGATATGGATCAAAAGTTCATG 59.515 38.462 0.52 0.00 31.78 3.07
5704 7827 6.138761 GTCGATATGGATCAAAAGTTCATGC 58.861 40.000 0.00 0.00 31.78 4.06
5705 7828 6.017605 GTCGATATGGATCAAAAGTTCATGCT 60.018 38.462 0.00 0.00 31.78 3.79
5706 7829 6.543465 TCGATATGGATCAAAAGTTCATGCTT 59.457 34.615 0.00 0.00 31.78 3.91
5707 7830 7.067372 TCGATATGGATCAAAAGTTCATGCTTT 59.933 33.333 0.00 0.00 40.07 3.51
5708 7831 7.703621 CGATATGGATCAAAAGTTCATGCTTTT 59.296 33.333 5.51 5.51 46.08 2.27
5709 7832 9.374838 GATATGGATCAAAAGTTCATGCTTTTT 57.625 29.630 7.96 3.07 43.66 1.94
5751 7874 4.706527 GCTCATGCTTGCTCGTAAATATC 58.293 43.478 0.00 0.00 36.03 1.63
5752 7875 4.212004 GCTCATGCTTGCTCGTAAATATCA 59.788 41.667 0.00 0.00 36.03 2.15
5809 7932 5.735354 GCCTGCAATCAAATGTCTAATCCTG 60.735 44.000 0.00 0.00 0.00 3.86
5815 7938 5.620738 TCAAATGTCTAATCCTGAGAGGG 57.379 43.478 0.00 0.00 35.59 4.30
5816 7939 5.280499 TCAAATGTCTAATCCTGAGAGGGA 58.720 41.667 0.00 0.00 39.95 4.20
5819 7942 4.061131 TGTCTAATCCTGAGAGGGAACA 57.939 45.455 0.00 0.00 39.02 3.18
5829 7952 4.641989 CCTGAGAGGGAACATTATTGTTGG 59.358 45.833 7.69 0.00 46.01 3.77
5834 7957 4.946646 AGGGAACATTATTGTTGGGTGAT 58.053 39.130 7.69 0.00 46.01 3.06
5841 7964 9.174166 GAACATTATTGTTGGGTGATAGTAGTT 57.826 33.333 7.69 0.00 46.01 2.24
5846 7969 4.575885 TGTTGGGTGATAGTAGTTGCTTC 58.424 43.478 0.00 0.00 0.00 3.86
5855 7978 6.265649 GTGATAGTAGTTGCTTCTCCCATAGA 59.734 42.308 0.00 0.00 0.00 1.98
5872 7995 4.579340 CCATAGAGCAGATGCATTTTCACT 59.421 41.667 0.00 0.00 45.16 3.41
5917 8040 4.527816 AGTTTTTCACCACATGGCATATGT 59.472 37.500 4.87 0.00 39.32 2.29
5918 8041 4.453177 TTTTCACCACATGGCATATGTG 57.547 40.909 20.39 20.39 46.49 3.21
5942 8065 5.988310 TGAGCAACCTCAAATCAATGAAT 57.012 34.783 0.00 0.00 44.79 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.746703 ACTCCCTTCTTATGTAAGAGTGTTTT 58.253 34.615 3.02 0.00 42.66 2.43
1 2 7.317722 ACTCCCTTCTTATGTAAGAGTGTTT 57.682 36.000 3.02 0.00 42.66 2.83
3 4 7.183460 AGTACTCCCTTCTTATGTAAGAGTGT 58.817 38.462 0.00 2.89 42.66 3.55
98 100 9.060347 TGAAGATCATTTCTATGTATGAAAGGC 57.940 33.333 0.00 0.00 36.94 4.35
174 178 4.712191 TTTTTGAAATGCACAATGAGCG 57.288 36.364 0.00 0.00 33.85 5.03
289 298 6.920569 AAAAAGTGTTCACGTATCTCAGTT 57.079 33.333 0.00 0.00 0.00 3.16
295 304 9.584839 ACGTATTTTAAAAAGTGTTCACGTATC 57.415 29.630 4.44 0.00 37.16 2.24
319 329 8.023128 ACCATTTTTGTAGATTTTCTCATCACG 58.977 33.333 0.00 0.00 0.00 4.35
321 331 9.912634 GAACCATTTTTGTAGATTTTCTCATCA 57.087 29.630 0.00 0.00 0.00 3.07
330 340 6.627395 TGTCGTGAACCATTTTTGTAGATT 57.373 33.333 0.00 0.00 0.00 2.40
331 341 6.485313 TCTTGTCGTGAACCATTTTTGTAGAT 59.515 34.615 0.00 0.00 0.00 1.98
336 346 5.005299 GGTTTCTTGTCGTGAACCATTTTTG 59.995 40.000 0.00 0.00 0.00 2.44
354 364 0.976590 GGGACTAGGCGAGGGTTTCT 60.977 60.000 0.00 0.00 0.00 2.52
356 366 0.620700 ATGGGACTAGGCGAGGGTTT 60.621 55.000 0.00 0.00 0.00 3.27
380 390 8.593945 AAAATATGAAGGACTGGCTCAAAATA 57.406 30.769 0.00 0.00 0.00 1.40
461 471 5.805994 CGAAGGAAGTAGCTCGTTAAGATTT 59.194 40.000 0.00 0.00 0.00 2.17
640 692 1.623811 GTCTGGGTTTAGTGAGCCTCA 59.376 52.381 0.00 0.00 38.04 3.86
678 730 1.468520 CCTGTTTGACGCCTAATGTGG 59.531 52.381 0.00 0.00 0.00 4.17
682 734 4.079253 ACAAATCCTGTTTGACGCCTAAT 58.921 39.130 7.44 0.00 32.99 1.73
683 735 3.482436 ACAAATCCTGTTTGACGCCTAA 58.518 40.909 7.44 0.00 32.99 2.69
774 2224 1.071471 ACACGAGCCCAGTTTGAGG 59.929 57.895 0.00 0.00 0.00 3.86
1114 2578 1.444553 GCACTCGAGTCCCAGTTCG 60.445 63.158 16.96 2.73 38.13 3.95
1225 2690 4.914420 CTCCGCCGCAGCTCTACG 62.914 72.222 0.00 0.00 36.60 3.51
1246 2744 0.324943 ACCCAAGATGTTCCAGTCCG 59.675 55.000 0.00 0.00 0.00 4.79
1364 2863 3.101437 TCCCTGCCTCGTGAAAAGTATA 58.899 45.455 0.00 0.00 0.00 1.47
1388 2887 5.705441 TGCTCAAAGATCATAAGGAACGTTT 59.295 36.000 0.46 0.00 0.00 3.60
1423 2922 1.001378 CGCTCTGGAAAACCTTGTTGG 60.001 52.381 0.00 0.00 42.93 3.77
1432 2931 6.627395 TTATTCTGTTTTCGCTCTGGAAAA 57.373 33.333 0.00 0.00 42.03 2.29
1516 3015 5.152306 AGAAGAGGGGGTACATGTATGTA 57.848 43.478 9.18 0.73 41.97 2.29
1517 3016 4.008916 AGAAGAGGGGGTACATGTATGT 57.991 45.455 9.18 2.75 44.48 2.29
1518 3017 7.979786 ATATAGAAGAGGGGGTACATGTATG 57.020 40.000 9.18 0.00 0.00 2.39
1648 3152 3.755378 GAGAACACTTCCTTGCACATCAT 59.245 43.478 0.00 0.00 0.00 2.45
1649 3153 3.141398 GAGAACACTTCCTTGCACATCA 58.859 45.455 0.00 0.00 0.00 3.07
1650 3154 2.485814 GGAGAACACTTCCTTGCACATC 59.514 50.000 0.00 0.00 0.00 3.06
1651 3155 2.158623 TGGAGAACACTTCCTTGCACAT 60.159 45.455 0.00 0.00 35.67 3.21
1710 3232 0.990374 ACAGCTGCTCCAAGGAAGAT 59.010 50.000 15.27 0.00 0.00 2.40
2013 3541 0.540365 CAAGTCCCAGCAACCATGGT 60.540 55.000 13.00 13.00 35.96 3.55
2031 3559 0.945099 TCAAACATACCGCGCAAACA 59.055 45.000 8.75 0.00 0.00 2.83
2493 4032 6.183360 TGGGGAAGAAAATAACCACAAAAGAC 60.183 38.462 0.00 0.00 32.59 3.01
2509 4048 2.509964 GGAGCCTTAAGATGGGGAAGAA 59.490 50.000 3.36 0.00 0.00 2.52
2513 4052 2.212752 ATGGAGCCTTAAGATGGGGA 57.787 50.000 3.36 0.00 0.00 4.81
2584 4131 2.367567 GTCCTTCACGGGGCTCAATATA 59.632 50.000 0.00 0.00 0.00 0.86
2603 4155 6.530019 AATGTCCACAATGAAATAAGGGTC 57.470 37.500 0.00 0.00 0.00 4.46
2648 4202 3.044986 GCACAGCACTGTAAACATTGTG 58.955 45.455 2.38 7.29 42.83 3.33
2654 4208 7.967854 TCAATTTATATGCACAGCACTGTAAAC 59.032 33.333 2.38 0.00 43.04 2.01
2660 4217 5.010314 CCCATCAATTTATATGCACAGCACT 59.990 40.000 0.00 0.00 43.04 4.40
2722 4280 3.329225 TCCATTGTTGACACTCATGGGTA 59.671 43.478 0.00 0.00 36.10 3.69
2764 4334 2.191128 AGACAGCAACAAGGTCCATC 57.809 50.000 0.00 0.00 31.99 3.51
2770 4341 4.396166 CCTATGGTAAAGACAGCAACAAGG 59.604 45.833 0.00 0.00 0.00 3.61
2771 4342 5.003804 ACCTATGGTAAAGACAGCAACAAG 58.996 41.667 0.00 0.00 32.11 3.16
2863 4481 5.539574 TGCTCCCTTCAATGAATTTTCAGAA 59.460 36.000 0.00 0.00 41.08 3.02
2967 4595 9.075519 CAATGTTAACGTTAGAATTTGCATGAT 57.924 29.630 12.62 0.00 0.00 2.45
2995 4623 1.398692 TGGCTCACAACCTTCAAACC 58.601 50.000 0.00 0.00 0.00 3.27
3056 4684 6.163909 TCCGCTAGGTGGATTAACTTATCCA 61.164 44.000 1.31 1.31 43.00 3.41
3100 4728 1.454479 CCGCTTCATCCTGGCCAAT 60.454 57.895 7.01 0.00 0.00 3.16
3264 4893 1.714794 AGCGAACCAACATCTTCTCG 58.285 50.000 0.00 0.00 0.00 4.04
3453 5521 1.202818 ACTTTCTCAGTCAGTTGCCCC 60.203 52.381 0.00 0.00 0.00 5.80
3477 5545 2.779755 TGACACTGTATGGGCGATTT 57.220 45.000 0.00 0.00 0.00 2.17
3714 5782 1.735386 CAGCAGTCTGGGATTCACAG 58.265 55.000 9.78 9.78 36.68 3.66
3736 5805 2.568623 AGTGTTTTCCGAGCCTTCAT 57.431 45.000 0.00 0.00 0.00 2.57
3758 5827 2.099141 TGATGAGAAACTCGGGCTTG 57.901 50.000 0.00 0.00 32.35 4.01
4001 6073 1.604278 AGCTTGAAAAACGAGGCTGTC 59.396 47.619 0.00 0.00 0.00 3.51
4167 6256 0.984230 CTTCACTGGCCTCACCCTTA 59.016 55.000 3.32 0.00 37.83 2.69
4210 6299 0.179108 AGCTTATTCCTGTCGTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
4232 6321 6.335777 TCTGCCTTCTTCGTTACTTTATACC 58.664 40.000 0.00 0.00 0.00 2.73
4237 6326 3.067833 GCTCTGCCTTCTTCGTTACTTT 58.932 45.455 0.00 0.00 0.00 2.66
4243 6332 1.609320 GGAAAGCTCTGCCTTCTTCGT 60.609 52.381 0.00 0.00 30.62 3.85
4254 6346 2.614987 GCAGATGACACTGGAAAGCTCT 60.615 50.000 0.00 0.00 38.22 4.09
4264 6356 0.392706 TCGGTGTTGCAGATGACACT 59.607 50.000 16.67 0.00 44.22 3.55
4286 6378 4.155733 CGGCAGCCATACCACCGA 62.156 66.667 13.30 0.00 46.71 4.69
4299 6391 1.195442 TTATGGGACTCACCACGGCA 61.195 55.000 0.00 0.00 44.72 5.69
4324 6416 2.416162 CCCTCGCTAACAGAGAGACAAC 60.416 54.545 8.30 0.00 43.61 3.32
4348 6440 0.815615 CCGTCAGGATGCTTTAGGGC 60.816 60.000 0.00 0.00 41.02 5.19
4350 6442 0.815615 GCCCGTCAGGATGCTTTAGG 60.816 60.000 0.00 0.00 41.02 2.69
4375 6467 4.998568 TAACTCCCGTTACAAGGTCTTCCT 60.999 45.833 0.00 0.00 38.96 3.36
4376 6468 1.622312 ACTCCCGTTACAAGGTCTTCC 59.378 52.381 0.00 0.00 0.00 3.46
4377 6469 3.397849 AACTCCCGTTACAAGGTCTTC 57.602 47.619 0.00 0.00 0.00 2.87
4408 6500 9.788960 GTTTAGCTTTCCTCATAATTTAACTGG 57.211 33.333 0.00 0.00 0.00 4.00
4444 6536 8.364142 AGTACAGAGGAATTGCTCATATTAGTC 58.636 37.037 26.36 9.78 0.00 2.59
4468 6560 4.917906 ATTAGAGTTGAGCTTCCCAAGT 57.082 40.909 0.00 0.00 0.00 3.16
4474 6566 5.862678 ACCTCCTATTAGAGTTGAGCTTC 57.137 43.478 0.00 0.00 31.53 3.86
4478 6570 9.720769 TTAAACAAACCTCCTATTAGAGTTGAG 57.279 33.333 0.00 0.00 31.53 3.02
4489 6586 7.794041 TCAGTAGTTGTTAAACAAACCTCCTA 58.206 34.615 0.00 0.00 40.15 2.94
4495 6592 7.431376 GCTTTCCTCAGTAGTTGTTAAACAAAC 59.569 37.037 0.00 0.00 40.15 2.93
4496 6593 7.338449 AGCTTTCCTCAGTAGTTGTTAAACAAA 59.662 33.333 0.00 0.00 40.15 2.83
4497 6594 6.826741 AGCTTTCCTCAGTAGTTGTTAAACAA 59.173 34.615 0.00 0.00 38.88 2.83
4498 6595 6.260050 CAGCTTTCCTCAGTAGTTGTTAAACA 59.740 38.462 0.00 0.00 38.88 2.83
4510 6607 3.391296 TGAACTAACCAGCTTTCCTCAGT 59.609 43.478 0.00 0.00 0.00 3.41
4538 6635 0.179029 AAACCACAGGAACCTCCGTG 60.179 55.000 9.35 9.35 42.75 4.94
4539 6636 0.549469 AAAACCACAGGAACCTCCGT 59.451 50.000 0.00 0.00 42.75 4.69
4557 6654 5.510179 CGACTGTAAAGGTAGTTTCCCAGAA 60.510 44.000 0.00 0.00 33.99 3.02
4558 6655 4.021719 CGACTGTAAAGGTAGTTTCCCAGA 60.022 45.833 0.00 0.00 33.99 3.86
4559 6656 4.243270 CGACTGTAAAGGTAGTTTCCCAG 58.757 47.826 0.00 0.00 35.11 4.45
4560 6657 3.007182 CCGACTGTAAAGGTAGTTTCCCA 59.993 47.826 0.00 0.00 0.00 4.37
4561 6658 3.593096 CCGACTGTAAAGGTAGTTTCCC 58.407 50.000 0.00 0.00 0.00 3.97
4562 6659 3.007290 ACCCGACTGTAAAGGTAGTTTCC 59.993 47.826 0.00 0.00 0.00 3.13
4563 6660 4.263018 ACCCGACTGTAAAGGTAGTTTC 57.737 45.455 0.00 0.00 0.00 2.78
4564 6661 5.718607 AGATACCCGACTGTAAAGGTAGTTT 59.281 40.000 8.49 0.00 38.23 2.66
4565 6662 5.267587 AGATACCCGACTGTAAAGGTAGTT 58.732 41.667 8.49 0.00 38.23 2.24
4566 6663 4.864726 AGATACCCGACTGTAAAGGTAGT 58.135 43.478 8.49 0.00 38.23 2.73
4567 6664 5.472820 CCTAGATACCCGACTGTAAAGGTAG 59.527 48.000 8.49 0.00 38.23 3.18
4581 6681 8.871125 TGAGAGAATTACAATTCCTAGATACCC 58.129 37.037 10.37 0.00 44.55 3.69
4610 6710 4.686191 TGGTTTGCCAAAAGATGAACAT 57.314 36.364 0.00 0.00 42.83 2.71
4665 6782 7.388460 TGACTTACAGGTCTACTAAAGCTAC 57.612 40.000 0.00 0.00 37.16 3.58
4666 6783 7.627298 CTGACTTACAGGTCTACTAAAGCTA 57.373 40.000 0.00 0.00 42.39 3.32
4667 6784 6.518208 CTGACTTACAGGTCTACTAAAGCT 57.482 41.667 0.00 0.00 42.39 3.74
4679 6796 7.015682 AATGGGTATCATCTACTGACTTACAGG 59.984 40.741 0.00 0.00 41.96 4.00
4680 6797 7.869937 CAATGGGTATCATCTACTGACTTACAG 59.130 40.741 0.00 0.00 42.69 2.74
4681 6798 7.344612 ACAATGGGTATCATCTACTGACTTACA 59.655 37.037 0.00 0.00 36.48 2.41
4682 6799 7.727181 ACAATGGGTATCATCTACTGACTTAC 58.273 38.462 0.00 0.00 36.48 2.34
4683 6800 7.914427 ACAATGGGTATCATCTACTGACTTA 57.086 36.000 0.00 0.00 36.48 2.24
4684 6801 6.814954 ACAATGGGTATCATCTACTGACTT 57.185 37.500 0.00 0.00 36.48 3.01
4700 6817 7.824289 TGAAGTCTAAAGATACAGAACAATGGG 59.176 37.037 0.00 0.00 0.00 4.00
4747 6864 5.358725 TCTGCAATGTCACTAATGCATTGAT 59.641 36.000 22.27 6.81 46.59 2.57
4777 6894 2.765969 CCCACAGCCCCAGAACAT 59.234 61.111 0.00 0.00 0.00 2.71
4824 6944 3.819368 TGACTGGATTGTGAGCAAGAAA 58.181 40.909 0.00 0.00 38.10 2.52
4825 6945 3.490439 TGACTGGATTGTGAGCAAGAA 57.510 42.857 0.00 0.00 38.10 2.52
4842 6962 6.968131 TCACAAATGTACTTGCTCTATGAC 57.032 37.500 0.00 0.00 0.00 3.06
4888 7008 2.422127 GGGGTGATGTTGTTCGTAATGG 59.578 50.000 0.00 0.00 0.00 3.16
4891 7011 2.932855 TGGGGTGATGTTGTTCGTAA 57.067 45.000 0.00 0.00 0.00 3.18
4944 7064 3.197790 ATGTGCCAGATCACGCGC 61.198 61.111 5.73 0.00 39.73 6.86
4946 7066 2.406401 GCATGTGCCAGATCACGC 59.594 61.111 0.00 0.00 39.73 5.34
5009 7130 9.142515 CGGTAGATTAACTGTACATGTACAAAA 57.857 33.333 32.40 26.12 44.47 2.44
5013 7134 5.689068 GGCGGTAGATTAACTGTACATGTAC 59.311 44.000 25.99 25.99 36.63 2.90
5016 7138 3.734231 CGGCGGTAGATTAACTGTACATG 59.266 47.826 0.00 0.00 0.00 3.21
5022 7144 2.589798 TTCCGGCGGTAGATTAACTG 57.410 50.000 27.32 0.00 0.00 3.16
5033 7155 0.243636 AAGATTTTGCTTTCCGGCGG 59.756 50.000 22.51 22.51 34.52 6.13
5037 7159 3.963665 TGTGACAAGATTTTGCTTTCCG 58.036 40.909 0.00 0.00 37.85 4.30
5038 7160 5.186996 TCTGTGACAAGATTTTGCTTTCC 57.813 39.130 0.00 0.00 37.85 3.13
5045 7167 9.434420 TTGTTGAATTTTCTGTGACAAGATTTT 57.566 25.926 0.00 0.00 0.00 1.82
5054 7176 9.434420 ACTGAAATTTTGTTGAATTTTCTGTGA 57.566 25.926 13.10 0.00 42.10 3.58
5090 7212 1.079503 CAACGACCTCTAAAGCAGGC 58.920 55.000 0.00 0.00 33.84 4.85
5091 7213 1.079503 GCAACGACCTCTAAAGCAGG 58.920 55.000 0.00 0.00 37.03 4.85
5092 7214 1.728971 CAGCAACGACCTCTAAAGCAG 59.271 52.381 0.00 0.00 0.00 4.24
5093 7215 1.070134 ACAGCAACGACCTCTAAAGCA 59.930 47.619 0.00 0.00 0.00 3.91
5094 7216 1.797025 ACAGCAACGACCTCTAAAGC 58.203 50.000 0.00 0.00 0.00 3.51
5095 7217 4.813296 AAAACAGCAACGACCTCTAAAG 57.187 40.909 0.00 0.00 0.00 1.85
5096 7218 6.664515 CATAAAAACAGCAACGACCTCTAAA 58.335 36.000 0.00 0.00 0.00 1.85
5097 7219 5.334569 GCATAAAAACAGCAACGACCTCTAA 60.335 40.000 0.00 0.00 0.00 2.10
5098 7220 4.153475 GCATAAAAACAGCAACGACCTCTA 59.847 41.667 0.00 0.00 0.00 2.43
5099 7221 3.058224 GCATAAAAACAGCAACGACCTCT 60.058 43.478 0.00 0.00 0.00 3.69
5100 7222 3.234386 GCATAAAAACAGCAACGACCTC 58.766 45.455 0.00 0.00 0.00 3.85
5101 7223 2.621055 TGCATAAAAACAGCAACGACCT 59.379 40.909 0.00 0.00 34.97 3.85
5102 7224 3.006659 TGCATAAAAACAGCAACGACC 57.993 42.857 0.00 0.00 34.97 4.79
5103 7225 4.225984 TGATGCATAAAAACAGCAACGAC 58.774 39.130 0.00 0.00 42.15 4.34
5104 7226 4.495911 TGATGCATAAAAACAGCAACGA 57.504 36.364 0.00 0.00 42.15 3.85
5105 7227 5.766702 ATTGATGCATAAAAACAGCAACG 57.233 34.783 0.00 0.00 44.06 4.10
5106 7228 8.068977 TCAAAATTGATGCATAAAAACAGCAAC 58.931 29.630 0.00 0.00 44.06 4.17
5107 7229 8.151141 TCAAAATTGATGCATAAAAACAGCAA 57.849 26.923 0.00 0.00 45.18 3.91
5108 7230 7.725818 TCAAAATTGATGCATAAAAACAGCA 57.274 28.000 0.00 0.00 43.14 4.41
5109 7231 8.497554 TCTTCAAAATTGATGCATAAAAACAGC 58.502 29.630 0.00 0.00 37.00 4.40
5110 7232 9.801714 GTCTTCAAAATTGATGCATAAAAACAG 57.198 29.630 0.00 0.00 37.00 3.16
5111 7233 9.322773 TGTCTTCAAAATTGATGCATAAAAACA 57.677 25.926 0.00 0.00 37.00 2.83
5117 7239 9.491675 ACAAAATGTCTTCAAAATTGATGCATA 57.508 25.926 0.00 0.00 37.00 3.14
5118 7240 8.385898 ACAAAATGTCTTCAAAATTGATGCAT 57.614 26.923 0.00 0.00 37.00 3.96
5119 7241 7.789273 ACAAAATGTCTTCAAAATTGATGCA 57.211 28.000 0.00 0.00 37.00 3.96
5120 7242 9.195411 TCTACAAAATGTCTTCAAAATTGATGC 57.805 29.630 0.00 0.00 37.00 3.91
5152 7274 8.639761 ACGGTCTTATATTAGTTTGCAGAGTAT 58.360 33.333 0.00 0.00 0.00 2.12
5153 7275 8.004087 ACGGTCTTATATTAGTTTGCAGAGTA 57.996 34.615 0.00 0.00 0.00 2.59
5154 7276 6.875076 ACGGTCTTATATTAGTTTGCAGAGT 58.125 36.000 0.00 0.00 0.00 3.24
5155 7277 7.772332 AACGGTCTTATATTAGTTTGCAGAG 57.228 36.000 0.00 0.00 0.00 3.35
5156 7278 9.309516 CTAAACGGTCTTATATTAGTTTGCAGA 57.690 33.333 2.17 0.00 34.29 4.26
5157 7279 8.548721 CCTAAACGGTCTTATATTAGTTTGCAG 58.451 37.037 2.17 0.00 34.29 4.41
5158 7280 8.042515 ACCTAAACGGTCTTATATTAGTTTGCA 58.957 33.333 2.17 0.00 44.93 4.08
5159 7281 8.429493 ACCTAAACGGTCTTATATTAGTTTGC 57.571 34.615 2.17 0.00 44.93 3.68
5186 7308 9.406113 AGACCGTTTATAGATCACTAAAGTAGT 57.594 33.333 0.00 0.00 40.28 2.73
5205 7327 9.760077 CCATCTGTAAACTAATATAAGACCGTT 57.240 33.333 0.00 0.00 0.00 4.44
5206 7328 9.139734 TCCATCTGTAAACTAATATAAGACCGT 57.860 33.333 0.00 0.00 0.00 4.83
5207 7329 9.627395 CTCCATCTGTAAACTAATATAAGACCG 57.373 37.037 0.00 0.00 0.00 4.79
5208 7330 9.425577 GCTCCATCTGTAAACTAATATAAGACC 57.574 37.037 0.00 0.00 0.00 3.85
5209 7331 9.130312 CGCTCCATCTGTAAACTAATATAAGAC 57.870 37.037 0.00 0.00 0.00 3.01
5210 7332 7.813148 GCGCTCCATCTGTAAACTAATATAAGA 59.187 37.037 0.00 0.00 0.00 2.10
5211 7333 7.598869 TGCGCTCCATCTGTAAACTAATATAAG 59.401 37.037 9.73 0.00 0.00 1.73
5212 7334 7.438564 TGCGCTCCATCTGTAAACTAATATAA 58.561 34.615 9.73 0.00 0.00 0.98
5213 7335 6.988522 TGCGCTCCATCTGTAAACTAATATA 58.011 36.000 9.73 0.00 0.00 0.86
5214 7336 5.853936 TGCGCTCCATCTGTAAACTAATAT 58.146 37.500 9.73 0.00 0.00 1.28
5215 7337 5.270893 TGCGCTCCATCTGTAAACTAATA 57.729 39.130 9.73 0.00 0.00 0.98
5216 7338 4.137116 TGCGCTCCATCTGTAAACTAAT 57.863 40.909 9.73 0.00 0.00 1.73
5217 7339 3.603158 TGCGCTCCATCTGTAAACTAA 57.397 42.857 9.73 0.00 0.00 2.24
5218 7340 3.457234 CATGCGCTCCATCTGTAAACTA 58.543 45.455 9.73 0.00 29.71 2.24
5219 7341 2.283298 CATGCGCTCCATCTGTAAACT 58.717 47.619 9.73 0.00 29.71 2.66
5220 7342 1.331756 CCATGCGCTCCATCTGTAAAC 59.668 52.381 9.73 0.00 29.71 2.01
5221 7343 1.065491 ACCATGCGCTCCATCTGTAAA 60.065 47.619 9.73 0.00 29.71 2.01
5222 7344 0.541392 ACCATGCGCTCCATCTGTAA 59.459 50.000 9.73 0.00 29.71 2.41
5223 7345 0.541392 AACCATGCGCTCCATCTGTA 59.459 50.000 9.73 0.00 29.71 2.74
5224 7346 1.028330 CAACCATGCGCTCCATCTGT 61.028 55.000 9.73 0.00 29.71 3.41
5225 7347 1.028330 ACAACCATGCGCTCCATCTG 61.028 55.000 9.73 1.51 29.71 2.90
5226 7348 0.322816 AACAACCATGCGCTCCATCT 60.323 50.000 9.73 0.00 29.71 2.90
5227 7349 0.527565 AAACAACCATGCGCTCCATC 59.472 50.000 9.73 0.00 29.71 3.51
5228 7350 0.968405 AAAACAACCATGCGCTCCAT 59.032 45.000 9.73 0.00 33.39 3.41
5229 7351 0.749649 AAAAACAACCATGCGCTCCA 59.250 45.000 9.73 0.00 0.00 3.86
5230 7352 2.715737 TAAAAACAACCATGCGCTCC 57.284 45.000 9.73 0.00 0.00 4.70
5231 7353 2.345341 GCATAAAAACAACCATGCGCTC 59.655 45.455 9.73 0.00 34.96 5.03
5232 7354 2.288702 TGCATAAAAACAACCATGCGCT 60.289 40.909 9.73 0.00 45.31 5.92
5233 7355 2.064762 TGCATAAAAACAACCATGCGC 58.935 42.857 0.00 0.00 45.31 6.09
5234 7356 3.925299 TGATGCATAAAAACAACCATGCG 59.075 39.130 0.00 0.00 45.31 4.73
5235 7357 4.931002 ACTGATGCATAAAAACAACCATGC 59.069 37.500 0.00 0.00 43.22 4.06
5236 7358 7.424227 AAACTGATGCATAAAAACAACCATG 57.576 32.000 0.00 0.00 0.00 3.66
5237 7359 8.449251 AAAAACTGATGCATAAAAACAACCAT 57.551 26.923 0.00 0.00 0.00 3.55
5238 7360 7.856145 AAAAACTGATGCATAAAAACAACCA 57.144 28.000 0.00 0.00 0.00 3.67
5239 7361 9.862585 CTTAAAAACTGATGCATAAAAACAACC 57.137 29.630 0.00 0.00 0.00 3.77
5240 7362 9.368921 GCTTAAAAACTGATGCATAAAAACAAC 57.631 29.630 0.00 0.00 0.00 3.32
5241 7363 8.555361 GGCTTAAAAACTGATGCATAAAAACAA 58.445 29.630 0.00 0.00 0.00 2.83
5242 7364 7.712639 TGGCTTAAAAACTGATGCATAAAAACA 59.287 29.630 0.00 0.00 0.00 2.83
5243 7365 8.082334 TGGCTTAAAAACTGATGCATAAAAAC 57.918 30.769 0.00 0.00 0.00 2.43
5244 7366 8.845413 ATGGCTTAAAAACTGATGCATAAAAA 57.155 26.923 0.00 0.00 0.00 1.94
5245 7367 8.845413 AATGGCTTAAAAACTGATGCATAAAA 57.155 26.923 0.00 0.00 0.00 1.52
5247 7369 9.531942 CATAATGGCTTAAAAACTGATGCATAA 57.468 29.630 0.00 0.00 0.00 1.90
5248 7370 8.911965 TCATAATGGCTTAAAAACTGATGCATA 58.088 29.630 0.00 0.00 0.00 3.14
5249 7371 7.784037 TCATAATGGCTTAAAAACTGATGCAT 58.216 30.769 0.00 0.00 0.00 3.96
5250 7372 7.167924 TCATAATGGCTTAAAAACTGATGCA 57.832 32.000 0.00 0.00 0.00 3.96
5251 7373 7.975616 TCTTCATAATGGCTTAAAAACTGATGC 59.024 33.333 0.00 0.00 0.00 3.91
5252 7374 9.512435 CTCTTCATAATGGCTTAAAAACTGATG 57.488 33.333 0.00 0.00 0.00 3.07
5253 7375 9.466497 TCTCTTCATAATGGCTTAAAAACTGAT 57.534 29.630 0.00 0.00 0.00 2.90
5254 7376 8.862325 TCTCTTCATAATGGCTTAAAAACTGA 57.138 30.769 0.00 0.00 0.00 3.41
5275 7397 9.469097 GGGACACTGAGTATTATGTATATCTCT 57.531 37.037 0.00 0.00 0.00 3.10
5276 7398 9.244292 TGGGACACTGAGTATTATGTATATCTC 57.756 37.037 0.00 0.00 0.00 2.75
5297 7419 8.468399 GCCTGTTATTCTAGTACTATATGGGAC 58.532 40.741 2.33 0.00 0.00 4.46
5298 7420 7.338703 CGCCTGTTATTCTAGTACTATATGGGA 59.661 40.741 2.33 0.00 0.00 4.37
5299 7421 7.122353 ACGCCTGTTATTCTAGTACTATATGGG 59.878 40.741 2.33 0.38 0.00 4.00
5300 7422 7.968956 CACGCCTGTTATTCTAGTACTATATGG 59.031 40.741 2.33 0.25 0.00 2.74
5301 7423 7.485277 GCACGCCTGTTATTCTAGTACTATATG 59.515 40.741 2.33 0.00 0.00 1.78
5302 7424 7.393796 AGCACGCCTGTTATTCTAGTACTATAT 59.606 37.037 2.33 3.28 0.00 0.86
5303 7425 6.713903 AGCACGCCTGTTATTCTAGTACTATA 59.286 38.462 2.33 0.00 0.00 1.31
5304 7426 5.535406 AGCACGCCTGTTATTCTAGTACTAT 59.465 40.000 2.33 0.00 0.00 2.12
5305 7427 4.885907 AGCACGCCTGTTATTCTAGTACTA 59.114 41.667 1.89 1.89 0.00 1.82
5306 7428 3.700038 AGCACGCCTGTTATTCTAGTACT 59.300 43.478 0.00 0.00 0.00 2.73
5307 7429 4.043037 AGCACGCCTGTTATTCTAGTAC 57.957 45.455 0.00 0.00 0.00 2.73
5308 7430 4.158949 TGAAGCACGCCTGTTATTCTAGTA 59.841 41.667 0.00 0.00 0.00 1.82
5309 7431 3.056107 TGAAGCACGCCTGTTATTCTAGT 60.056 43.478 0.00 0.00 0.00 2.57
5310 7432 3.307242 GTGAAGCACGCCTGTTATTCTAG 59.693 47.826 0.00 0.00 0.00 2.43
5311 7433 3.259064 GTGAAGCACGCCTGTTATTCTA 58.741 45.455 0.00 0.00 0.00 2.10
5312 7434 2.076863 GTGAAGCACGCCTGTTATTCT 58.923 47.619 0.00 0.00 0.00 2.40
5313 7435 1.130561 GGTGAAGCACGCCTGTTATTC 59.869 52.381 6.31 0.00 44.93 1.75
5314 7436 1.165270 GGTGAAGCACGCCTGTTATT 58.835 50.000 6.31 0.00 44.93 1.40
5315 7437 1.019278 CGGTGAAGCACGCCTGTTAT 61.019 55.000 10.79 0.00 46.05 1.89
5316 7438 1.666553 CGGTGAAGCACGCCTGTTA 60.667 57.895 10.79 0.00 46.05 2.41
5325 7447 3.691342 ACTAGGCGCGGTGAAGCA 61.691 61.111 8.83 0.00 36.85 3.91
5335 7457 0.176680 AGCAGGTCAATCACTAGGCG 59.823 55.000 0.00 0.00 0.00 5.52
5339 7461 2.099263 GCTACGAGCAGGTCAATCACTA 59.901 50.000 0.00 0.00 41.89 2.74
5351 7473 1.320344 AATCACCGGAGCTACGAGCA 61.320 55.000 22.92 2.17 45.56 4.26
5352 7474 0.872021 CAATCACCGGAGCTACGAGC 60.872 60.000 22.92 0.00 42.84 5.03
5355 7477 0.172578 TGACAATCACCGGAGCTACG 59.827 55.000 12.69 12.69 0.00 3.51
5369 7491 4.080638 TGCCATATGATACCAGTGTGACAA 60.081 41.667 3.65 0.00 0.00 3.18
5375 7497 7.532571 CAATGTTATGCCATATGATACCAGTG 58.467 38.462 3.65 0.15 0.00 3.66
5376 7498 6.151648 GCAATGTTATGCCATATGATACCAGT 59.848 38.462 3.65 0.00 40.49 4.00
5390 7512 4.746729 TGTGAAAGATGGCAATGTTATGC 58.253 39.130 0.00 0.00 45.67 3.14
5443 7565 5.757886 TCGTTTGTTTCATTGTCTTGATCC 58.242 37.500 0.00 0.00 0.00 3.36
5453 7575 6.260936 ACTCTGTCATCTTCGTTTGTTTCATT 59.739 34.615 0.00 0.00 0.00 2.57
5477 7599 8.723942 ACTGATGTTCCATTCTACAATTCTAC 57.276 34.615 0.00 0.00 0.00 2.59
5478 7600 9.166173 CAACTGATGTTCCATTCTACAATTCTA 57.834 33.333 0.00 0.00 33.52 2.10
5479 7601 7.121759 CCAACTGATGTTCCATTCTACAATTCT 59.878 37.037 0.00 0.00 33.52 2.40
5480 7602 7.253422 CCAACTGATGTTCCATTCTACAATTC 58.747 38.462 0.00 0.00 33.52 2.17
5481 7603 6.153340 CCCAACTGATGTTCCATTCTACAATT 59.847 38.462 0.00 0.00 33.52 2.32
5482 7604 5.653769 CCCAACTGATGTTCCATTCTACAAT 59.346 40.000 0.00 0.00 33.52 2.71
5483 7605 5.009631 CCCAACTGATGTTCCATTCTACAA 58.990 41.667 0.00 0.00 33.52 2.41
5484 7606 4.288366 TCCCAACTGATGTTCCATTCTACA 59.712 41.667 0.00 0.00 33.52 2.74
5523 7645 3.762407 TTAACAGACTGGTGCTTAGCA 57.238 42.857 1.39 1.39 35.60 3.49
5524 7646 3.437049 CCTTTAACAGACTGGTGCTTAGC 59.563 47.826 2.34 0.00 0.00 3.09
5525 7647 4.894784 TCCTTTAACAGACTGGTGCTTAG 58.105 43.478 2.34 0.00 0.00 2.18
5526 7648 4.967084 TCCTTTAACAGACTGGTGCTTA 57.033 40.909 2.34 0.00 0.00 3.09
5527 7649 3.857157 TCCTTTAACAGACTGGTGCTT 57.143 42.857 2.34 0.00 0.00 3.91
5528 7650 3.857157 TTCCTTTAACAGACTGGTGCT 57.143 42.857 2.34 0.00 0.00 4.40
5529 7651 5.392057 GCTATTTCCTTTAACAGACTGGTGC 60.392 44.000 2.34 0.00 0.00 5.01
5530 7652 5.705441 TGCTATTTCCTTTAACAGACTGGTG 59.295 40.000 2.34 0.00 0.00 4.17
5531 7653 5.876357 TGCTATTTCCTTTAACAGACTGGT 58.124 37.500 7.51 1.99 0.00 4.00
5532 7654 6.817765 TTGCTATTTCCTTTAACAGACTGG 57.182 37.500 7.51 0.00 0.00 4.00
5533 7655 9.346725 GAATTTGCTATTTCCTTTAACAGACTG 57.653 33.333 0.00 0.00 0.00 3.51
5534 7656 9.077885 TGAATTTGCTATTTCCTTTAACAGACT 57.922 29.630 1.34 0.00 0.00 3.24
5535 7657 9.860898 ATGAATTTGCTATTTCCTTTAACAGAC 57.139 29.630 1.34 0.00 0.00 3.51
5538 7660 9.995003 ACAATGAATTTGCTATTTCCTTTAACA 57.005 25.926 0.00 0.00 39.03 2.41
5540 7662 9.651913 GGACAATGAATTTGCTATTTCCTTTAA 57.348 29.630 0.00 0.00 39.03 1.52
5541 7663 8.811017 TGGACAATGAATTTGCTATTTCCTTTA 58.189 29.630 0.00 0.00 39.03 1.85
5542 7664 7.678837 TGGACAATGAATTTGCTATTTCCTTT 58.321 30.769 0.00 0.00 39.03 3.11
5543 7665 7.243604 TGGACAATGAATTTGCTATTTCCTT 57.756 32.000 0.00 0.00 39.03 3.36
5544 7666 6.855763 TGGACAATGAATTTGCTATTTCCT 57.144 33.333 0.00 0.00 39.03 3.36
5545 7667 7.903995 TTTGGACAATGAATTTGCTATTTCC 57.096 32.000 0.00 0.00 39.03 3.13
5546 7668 9.597999 GTTTTTGGACAATGAATTTGCTATTTC 57.402 29.630 0.00 0.00 39.03 2.17
5547 7669 9.118300 TGTTTTTGGACAATGAATTTGCTATTT 57.882 25.926 0.00 0.00 39.03 1.40
5548 7670 8.674263 TGTTTTTGGACAATGAATTTGCTATT 57.326 26.923 0.00 0.00 39.03 1.73
5549 7671 8.674263 TTGTTTTTGGACAATGAATTTGCTAT 57.326 26.923 0.00 0.00 39.03 2.97
5550 7672 8.674263 ATTGTTTTTGGACAATGAATTTGCTA 57.326 26.923 2.73 0.00 45.75 3.49
5584 7706 3.241804 GCTAAGATGCTTCAACTTCGACG 60.242 47.826 2.07 0.00 29.69 5.12
5618 7741 2.552367 TGGGGTGTTTGGTTCCTTTTT 58.448 42.857 0.00 0.00 0.00 1.94
5624 7747 1.165270 CTCGATGGGGTGTTTGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
5625 7748 0.893727 GCTCGATGGGGTGTTTGGTT 60.894 55.000 0.00 0.00 0.00 3.67
5626 7749 1.303317 GCTCGATGGGGTGTTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
5627 7750 1.303236 TGCTCGATGGGGTGTTTGG 60.303 57.895 0.00 0.00 0.00 3.28
5628 7751 0.888736 TGTGCTCGATGGGGTGTTTG 60.889 55.000 0.00 0.00 0.00 2.93
5631 7754 0.038166 ATTTGTGCTCGATGGGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
5634 7757 2.752354 TGTTAATTTGTGCTCGATGGGG 59.248 45.455 0.00 0.00 0.00 4.96
5643 7766 7.166804 ACTGTTTGTACGATTGTTAATTTGTGC 59.833 33.333 0.00 0.00 0.00 4.57
5660 7783 4.439057 GACCTCAACTCACACTGTTTGTA 58.561 43.478 0.00 0.00 35.67 2.41
5668 7791 3.130516 TCCATATCGACCTCAACTCACAC 59.869 47.826 0.00 0.00 0.00 3.82
5669 7792 3.361786 TCCATATCGACCTCAACTCACA 58.638 45.455 0.00 0.00 0.00 3.58
5680 7803 6.017605 AGCATGAACTTTTGATCCATATCGAC 60.018 38.462 0.00 0.00 34.60 4.20
5709 7832 8.605746 CATGAGCTTTTGATCTTGTTTCAAAAA 58.394 29.630 11.40 0.19 46.62 1.94
5710 7833 7.254522 GCATGAGCTTTTGATCTTGTTTCAAAA 60.255 33.333 0.00 10.21 45.78 2.44
5711 7834 6.201425 GCATGAGCTTTTGATCTTGTTTCAAA 59.799 34.615 0.00 0.00 40.63 2.69
5712 7835 5.693104 GCATGAGCTTTTGATCTTGTTTCAA 59.307 36.000 0.00 0.00 40.63 2.69
5713 7836 5.224888 GCATGAGCTTTTGATCTTGTTTCA 58.775 37.500 0.00 0.00 40.63 2.69
5714 7837 5.758570 GCATGAGCTTTTGATCTTGTTTC 57.241 39.130 0.00 0.00 40.63 2.78
5729 7852 4.212004 TGATATTTACGAGCAAGCATGAGC 59.788 41.667 0.00 0.00 42.56 4.26
5730 7853 5.912360 TGATATTTACGAGCAAGCATGAG 57.088 39.130 0.00 0.00 0.00 2.90
5751 7874 5.006165 GCCTTCTTCTGATGAGACGTTTATG 59.994 44.000 0.00 0.00 0.00 1.90
5752 7875 5.112686 GCCTTCTTCTGATGAGACGTTTAT 58.887 41.667 0.00 0.00 0.00 1.40
5809 7932 4.399303 CACCCAACAATAATGTTCCCTCTC 59.601 45.833 0.00 0.00 46.78 3.20
5815 7938 8.732746 ACTACTATCACCCAACAATAATGTTC 57.267 34.615 0.00 0.00 46.78 3.18
5819 7942 7.346471 AGCAACTACTATCACCCAACAATAAT 58.654 34.615 0.00 0.00 0.00 1.28
5829 7952 3.451178 TGGGAGAAGCAACTACTATCACC 59.549 47.826 0.00 0.00 0.00 4.02
5834 7957 4.585162 GCTCTATGGGAGAAGCAACTACTA 59.415 45.833 0.00 0.00 44.45 1.82
5841 7964 2.165357 TCTGCTCTATGGGAGAAGCA 57.835 50.000 0.00 0.00 45.33 3.91
5846 7969 3.420300 AATGCATCTGCTCTATGGGAG 57.580 47.619 0.00 0.00 44.49 4.30
5855 7978 5.477984 TCCTTTTAGTGAAAATGCATCTGCT 59.522 36.000 0.00 0.00 34.08 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.