Multiple sequence alignment - TraesCS5B01G422200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G422200 chr5B 100.000 3200 0 0 1 3200 597286797 597283598 0.000000e+00 5910.0
1 TraesCS5B01G422200 chr5A 95.083 1261 55 1 972 2225 606930349 606929089 0.000000e+00 1978.0
2 TraesCS5B01G422200 chr5A 91.363 741 49 3 1 740 606955002 606954276 0.000000e+00 1000.0
3 TraesCS5B01G422200 chr5A 81.962 887 115 26 917 1790 606954165 606953311 0.000000e+00 710.0
4 TraesCS5B01G422200 chr5A 81.630 675 115 3 1 667 606931246 606930573 4.670000e-153 551.0
5 TraesCS5B01G422200 chr3A 96.491 969 33 1 2232 3200 732511569 732510602 0.000000e+00 1600.0
6 TraesCS5B01G422200 chr5D 94.505 728 34 3 1485 2212 486217232 486216511 0.000000e+00 1118.0
7 TraesCS5B01G422200 chr5D 92.928 707 47 2 30 736 486229016 486228313 0.000000e+00 1026.0
8 TraesCS5B01G422200 chr5D 96.964 527 16 0 966 1492 486217993 486217467 0.000000e+00 885.0
9 TraesCS5B01G422200 chr5D 83.832 668 106 2 1 667 486223876 486223210 4.500000e-178 634.0
10 TraesCS5B01G422200 chr5D 83.053 714 86 27 778 1481 486228307 486227619 1.630000e-172 616.0
11 TraesCS5B01G422200 chr5D 97.059 34 1 0 1 34 486229529 486229496 1.240000e-04 58.4
12 TraesCS5B01G422200 chr6D 79.859 283 54 3 431 710 471339132 471338850 1.500000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G422200 chr5B 597283598 597286797 3199 True 5910.0 5910 100.0000 1 3200 1 chr5B.!!$R1 3199
1 TraesCS5B01G422200 chr5A 606929089 606931246 2157 True 1264.5 1978 88.3565 1 2225 2 chr5A.!!$R1 2224
2 TraesCS5B01G422200 chr5A 606953311 606955002 1691 True 855.0 1000 86.6625 1 1790 2 chr5A.!!$R2 1789
3 TraesCS5B01G422200 chr3A 732510602 732511569 967 True 1600.0 1600 96.4910 2232 3200 1 chr3A.!!$R1 968
4 TraesCS5B01G422200 chr5D 486216511 486217993 1482 True 1001.5 1118 95.7345 966 2212 2 chr5D.!!$R1 1246
5 TraesCS5B01G422200 chr5D 486223210 486229529 6319 True 583.6 1026 89.2180 1 1481 4 chr5D.!!$R2 1480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1438 0.185901 AAACAGAGAAGGGCCAGCAA 59.814 50.0 6.18 0.00 0.00 3.91 F
1957 3261 0.633733 CGATGAAAAGGACGACGACG 59.366 55.0 5.58 5.58 45.75 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 3287 0.094901 CGTCGTCGTCGTCATCTTCT 59.905 55.0 3.67 0.0 38.33 2.85 R
2788 4351 0.623324 TCCGGGGGTGATTCATTCCT 60.623 55.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.233271 CACCTGTCCTTGTGCAAAGAT 58.767 47.619 9.37 0.00 0.00 2.40
81 566 1.378514 GGCGGCTTCCCTTGAATCA 60.379 57.895 0.00 0.00 0.00 2.57
125 610 6.550938 TTGACAACATAGAGATCACATCCT 57.449 37.500 0.00 0.00 0.00 3.24
139 624 0.322456 CATCCTGCGAACCTTGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
161 646 0.320247 CCTCGCTATCACATCTGGGC 60.320 60.000 0.00 0.00 0.00 5.36
209 694 7.750458 ACTTTATGTTTCTTTGTATGTGCATCG 59.250 33.333 0.00 0.00 0.00 3.84
255 740 2.039746 TGTCGACCCAAAACATCATCCT 59.960 45.455 14.12 0.00 0.00 3.24
263 748 3.696051 CCAAAACATCATCCTGGTACCAG 59.304 47.826 31.71 31.71 43.26 4.00
264 749 4.567537 CCAAAACATCATCCTGGTACCAGA 60.568 45.833 38.35 25.38 46.30 3.86
276 761 4.163078 CCTGGTACCAGAACATCTTCTCAT 59.837 45.833 38.35 0.00 46.30 2.90
303 788 3.127533 GTGCCGCCATCTGACCAC 61.128 66.667 0.00 0.00 0.00 4.16
389 874 0.515127 CAAGTGTGGCGATGCGTAAA 59.485 50.000 0.00 0.00 0.00 2.01
443 928 1.964373 GGTCGATGGTGCACCGTTT 60.964 57.895 30.82 18.15 39.43 3.60
509 1002 3.067106 GGACGAGTGATGCAAGAAGAAA 58.933 45.455 0.00 0.00 0.00 2.52
701 1194 2.112297 GCCACCGTGTTTCCCAGA 59.888 61.111 0.00 0.00 0.00 3.86
737 1230 2.200067 GCCATCTGATCTCGAGTGTTG 58.800 52.381 13.13 6.88 0.00 3.33
741 1234 0.898320 CTGATCTCGAGTGTTGGGGT 59.102 55.000 13.13 0.00 0.00 4.95
743 1236 2.695666 CTGATCTCGAGTGTTGGGGTAT 59.304 50.000 13.13 0.00 0.00 2.73
744 1237 3.104512 TGATCTCGAGTGTTGGGGTATT 58.895 45.455 13.13 0.00 0.00 1.89
745 1238 3.517901 TGATCTCGAGTGTTGGGGTATTT 59.482 43.478 13.13 0.00 0.00 1.40
746 1239 4.019681 TGATCTCGAGTGTTGGGGTATTTT 60.020 41.667 13.13 0.00 0.00 1.82
747 1240 3.670625 TCTCGAGTGTTGGGGTATTTTG 58.329 45.455 13.13 0.00 0.00 2.44
748 1241 3.325425 TCTCGAGTGTTGGGGTATTTTGA 59.675 43.478 13.13 0.00 0.00 2.69
749 1242 4.069304 CTCGAGTGTTGGGGTATTTTGAA 58.931 43.478 3.62 0.00 0.00 2.69
750 1243 4.658063 TCGAGTGTTGGGGTATTTTGAAT 58.342 39.130 0.00 0.00 0.00 2.57
751 1244 5.074115 TCGAGTGTTGGGGTATTTTGAATT 58.926 37.500 0.00 0.00 0.00 2.17
752 1245 6.239396 TCGAGTGTTGGGGTATTTTGAATTA 58.761 36.000 0.00 0.00 0.00 1.40
753 1246 6.715718 TCGAGTGTTGGGGTATTTTGAATTAA 59.284 34.615 0.00 0.00 0.00 1.40
754 1247 7.394923 TCGAGTGTTGGGGTATTTTGAATTAAT 59.605 33.333 0.00 0.00 0.00 1.40
755 1248 8.032451 CGAGTGTTGGGGTATTTTGAATTAATT 58.968 33.333 0.00 0.00 0.00 1.40
756 1249 9.150348 GAGTGTTGGGGTATTTTGAATTAATTG 57.850 33.333 5.17 0.00 0.00 2.32
757 1250 8.655901 AGTGTTGGGGTATTTTGAATTAATTGT 58.344 29.630 5.17 0.00 0.00 2.71
758 1251 8.716909 GTGTTGGGGTATTTTGAATTAATTGTG 58.283 33.333 5.17 0.00 0.00 3.33
759 1252 8.432805 TGTTGGGGTATTTTGAATTAATTGTGT 58.567 29.630 5.17 0.00 0.00 3.72
760 1253 8.716909 GTTGGGGTATTTTGAATTAATTGTGTG 58.283 33.333 5.17 0.00 0.00 3.82
761 1254 7.967908 TGGGGTATTTTGAATTAATTGTGTGT 58.032 30.769 5.17 0.00 0.00 3.72
762 1255 9.090103 TGGGGTATTTTGAATTAATTGTGTGTA 57.910 29.630 5.17 0.00 0.00 2.90
847 1340 5.011738 TCGGTGGATCTATTTAAGGATGGAC 59.988 44.000 0.00 0.00 0.00 4.02
852 1345 7.550906 GTGGATCTATTTAAGGATGGACATAGC 59.449 40.741 0.00 0.00 0.00 2.97
880 1373 1.152247 AGCCGGATCCCAGCAGATA 60.152 57.895 20.49 0.00 0.00 1.98
881 1374 0.546267 AGCCGGATCCCAGCAGATAT 60.546 55.000 20.49 0.17 0.00 1.63
882 1375 1.195115 GCCGGATCCCAGCAGATATA 58.805 55.000 5.05 0.00 0.00 0.86
883 1376 1.765314 GCCGGATCCCAGCAGATATAT 59.235 52.381 5.05 0.00 0.00 0.86
884 1377 2.965831 GCCGGATCCCAGCAGATATATA 59.034 50.000 5.05 0.00 0.00 0.86
886 1379 4.562347 GCCGGATCCCAGCAGATATATATG 60.562 50.000 5.05 2.86 0.00 1.78
936 1436 0.250901 TCAAACAGAGAAGGGCCAGC 60.251 55.000 6.18 0.00 0.00 4.85
938 1438 0.185901 AAACAGAGAAGGGCCAGCAA 59.814 50.000 6.18 0.00 0.00 3.91
940 1440 2.045131 CAGAGAAGGGCCAGCAAGC 61.045 63.158 6.18 0.00 0.00 4.01
955 1455 2.027745 AGCAAGCATCGGATATTCGGAT 60.028 45.455 2.96 0.00 36.97 4.18
956 1456 2.349886 GCAAGCATCGGATATTCGGATC 59.650 50.000 2.96 0.00 34.73 3.36
957 1457 3.854666 CAAGCATCGGATATTCGGATCT 58.145 45.455 2.96 0.00 34.73 2.75
960 1460 5.661056 AGCATCGGATATTCGGATCTTTA 57.339 39.130 2.96 0.00 34.73 1.85
961 1461 6.037786 AGCATCGGATATTCGGATCTTTAA 57.962 37.500 2.96 0.00 34.73 1.52
992 1504 1.814793 GAAGAGGAGAAACACCAGGC 58.185 55.000 0.00 0.00 0.00 4.85
1110 1622 2.839162 GGGGACGGGTACGCCATA 60.839 66.667 4.09 0.00 46.04 2.74
1127 1639 1.935873 CATACGCAAGATGGACCTGTG 59.064 52.381 0.00 0.00 43.62 3.66
1710 2921 4.735132 TTCGACCCCGCGCTTGAG 62.735 66.667 5.56 0.00 35.37 3.02
1796 3040 4.485834 CGAACCCGACGATGCCGA 62.486 66.667 0.00 0.00 39.50 5.54
1843 3144 2.928757 CTCAGCAAGGAGAAGATGTTCG 59.071 50.000 0.00 0.00 37.79 3.95
1957 3261 0.633733 CGATGAAAAGGACGACGACG 59.366 55.000 5.58 5.58 45.75 5.12
1994 3298 2.093658 GCCCTTACCAAGAAGATGACGA 60.094 50.000 0.00 0.00 0.00 4.20
2000 3304 1.135774 CCAAGAAGATGACGACGACGA 60.136 52.381 15.32 0.00 42.66 4.20
2055 3359 2.637383 GGAGAACCTGCCTCGTCGT 61.637 63.158 0.00 0.00 0.00 4.34
2124 3428 0.393077 AACTGACTACTGCCAAGCGT 59.607 50.000 0.00 0.00 0.00 5.07
2128 3432 2.432456 CTACTGCCAAGCGTCGCA 60.432 61.111 21.09 0.00 0.00 5.10
2184 3488 2.029020 TCCGCTCTTTGATGATATCCGG 60.029 50.000 0.00 0.00 34.86 5.14
2228 3532 3.124806 CCATGATATGCAAGTCGATGCTC 59.875 47.826 11.96 2.79 46.54 4.26
2229 3533 2.397549 TGATATGCAAGTCGATGCTCG 58.602 47.619 11.96 0.00 46.54 5.03
2230 3534 1.723542 GATATGCAAGTCGATGCTCGG 59.276 52.381 11.96 0.00 46.54 4.63
2231 3535 0.875908 TATGCAAGTCGATGCTCGGC 60.876 55.000 11.96 2.52 46.20 5.54
2334 3638 1.973281 ACACTTGATTGCCCCGCAG 60.973 57.895 0.00 0.00 40.61 5.18
2355 3659 1.331756 CAGTATGTGATGCGCTTTCCC 59.668 52.381 9.73 0.00 0.00 3.97
2436 3824 0.888736 TGCTTGTGCGCATTACACCT 60.889 50.000 15.91 0.00 43.34 4.00
2442 3830 0.958382 TGCGCATTACACCTTGGTCC 60.958 55.000 5.66 0.00 0.00 4.46
2484 3872 4.085876 CTGGAAGTGGCTTGGGTG 57.914 61.111 0.00 0.00 0.00 4.61
2499 3887 3.959535 TGGGTGAAAATTGGCAAGATC 57.040 42.857 5.96 4.49 0.00 2.75
2504 3892 3.259123 GTGAAAATTGGCAAGATCCCACT 59.741 43.478 5.96 0.00 30.65 4.00
2520 3908 2.813754 CCCACTCAACAAACGATGTGAT 59.186 45.455 0.00 0.00 42.99 3.06
2616 4004 1.134037 TCTGTGCGGGTTAAACTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
2649 4037 2.439507 TGACAAACTTCCTTCCTCTGCT 59.560 45.455 0.00 0.00 0.00 4.24
2685 4248 2.618709 GGGGCGTTTCTATCATTTCCAG 59.381 50.000 0.00 0.00 0.00 3.86
2724 4287 4.028131 TGTTGGTGAGGAATACTATCCGT 58.972 43.478 0.00 0.00 44.60 4.69
2759 4322 3.313012 GCATATACCACACTATGCGGA 57.687 47.619 0.00 0.00 40.41 5.54
2788 4351 0.536233 TGCTACTCCCAAGCGCAAAA 60.536 50.000 11.47 0.00 43.11 2.44
2804 4367 2.093500 GCAAAAGGAATGAATCACCCCC 60.093 50.000 0.66 0.00 0.00 5.40
2806 4369 0.258774 AAGGAATGAATCACCCCCGG 59.741 55.000 0.00 0.00 0.00 5.73
2927 5200 2.919228 ACTTCCTGTGGACAGTGTTTC 58.081 47.619 0.00 0.00 42.27 2.78
2991 5443 4.051661 TGAGAAGATGGCCTTGGAAATT 57.948 40.909 3.32 0.00 34.68 1.82
3047 5499 2.499197 TGCAAAGGACGTTTATGAGCA 58.501 42.857 0.00 0.00 0.00 4.26
3087 5725 4.096984 GCTCCTTTCAATGAACATACCCTG 59.903 45.833 0.00 0.00 0.00 4.45
3104 6218 4.630644 CCCTGCAGGTGATTAGTCATAT 57.369 45.455 30.63 0.00 36.60 1.78
3111 6225 9.445878 CTGCAGGTGATTAGTCATATTGATATT 57.554 33.333 5.57 0.00 36.60 1.28
3137 6251 2.553904 CCTCTGTTCCAGTTTCCAGCAT 60.554 50.000 0.00 0.00 32.61 3.79
3176 6657 4.436998 CGAGGTGGTGGGAGACGC 62.437 72.222 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.613260 AAGACCTAACATGGCGAGCA 59.387 50.000 0.00 0.00 0.00 4.26
125 610 1.001393 GGGATTCCCAAGGTTCGCA 60.001 57.895 17.36 0.00 44.65 5.10
139 624 1.898472 CCAGATGTGATAGCGAGGGAT 59.102 52.381 0.00 0.00 0.00 3.85
209 694 2.333291 GAGTCTAGGGCTCGGCTAC 58.667 63.158 0.00 0.00 0.00 3.58
255 740 4.623886 GCATGAGAAGATGTTCTGGTACCA 60.624 45.833 15.39 15.39 43.50 3.25
263 748 3.118482 TCCCAGAGCATGAGAAGATGTTC 60.118 47.826 0.00 0.00 34.65 3.18
264 749 2.842496 TCCCAGAGCATGAGAAGATGTT 59.158 45.455 0.00 0.00 0.00 2.71
303 788 2.002586 CTATCTGTGCAACCCGTCAAG 58.997 52.381 0.00 0.00 34.36 3.02
509 1002 3.717294 CGCCACAGCCCTAGGGTT 61.717 66.667 28.96 21.41 37.65 4.11
540 1033 4.889856 CGCCGATCGCCACCATCA 62.890 66.667 10.32 0.00 0.00 3.07
635 1128 4.868314 TGTCATCATGGACATTTTTGCA 57.132 36.364 1.13 0.00 42.56 4.08
701 1194 2.813908 GCAACTTCGCCGACCGAT 60.814 61.111 0.00 0.00 46.81 4.18
755 1248 9.020731 CCGCTATATATATATCCCATACACACA 57.979 37.037 8.55 0.00 0.00 3.72
756 1249 7.974501 GCCGCTATATATATATCCCATACACAC 59.025 40.741 8.55 0.00 0.00 3.82
757 1250 7.148137 CGCCGCTATATATATATCCCATACACA 60.148 40.741 8.55 0.00 0.00 3.72
758 1251 7.194278 CGCCGCTATATATATATCCCATACAC 58.806 42.308 8.55 0.00 0.00 2.90
759 1252 6.320418 CCGCCGCTATATATATATCCCATACA 59.680 42.308 8.55 0.00 0.00 2.29
760 1253 6.735145 GCCGCCGCTATATATATATCCCATAC 60.735 46.154 8.55 0.00 0.00 2.39
761 1254 5.301045 GCCGCCGCTATATATATATCCCATA 59.699 44.000 8.55 0.00 0.00 2.74
762 1255 4.099573 GCCGCCGCTATATATATATCCCAT 59.900 45.833 8.55 0.00 0.00 4.00
763 1256 3.446161 GCCGCCGCTATATATATATCCCA 59.554 47.826 8.55 0.00 0.00 4.37
764 1257 3.488721 CGCCGCCGCTATATATATATCCC 60.489 52.174 8.55 1.35 0.00 3.85
765 1258 3.488721 CCGCCGCCGCTATATATATATCC 60.489 52.174 8.55 1.67 0.00 2.59
766 1259 3.692576 CCGCCGCCGCTATATATATATC 58.307 50.000 8.55 0.00 0.00 1.63
767 1260 2.159282 GCCGCCGCCGCTATATATATAT 60.159 50.000 10.10 10.10 0.00 0.86
768 1261 1.200716 GCCGCCGCCGCTATATATATA 59.799 52.381 2.49 2.49 0.00 0.86
769 1262 0.038526 GCCGCCGCCGCTATATATAT 60.039 55.000 0.00 0.00 0.00 0.86
770 1263 1.361271 GCCGCCGCCGCTATATATA 59.639 57.895 0.00 0.00 0.00 0.86
771 1264 2.106332 GCCGCCGCCGCTATATAT 59.894 61.111 0.00 0.00 0.00 0.86
772 1265 4.485834 CGCCGCCGCCGCTATATA 62.486 66.667 2.23 0.00 0.00 0.86
790 1283 1.696832 GGCAAGAGATCGAACGCACC 61.697 60.000 0.00 0.00 0.00 5.01
847 1340 1.148157 CGGCTCGGACTTGTGCTATG 61.148 60.000 0.00 0.00 0.00 2.23
891 1384 7.342026 AGGGCTAATTTATTTCGAACAGGAATT 59.658 33.333 0.00 5.42 0.00 2.17
892 1385 6.833933 AGGGCTAATTTATTTCGAACAGGAAT 59.166 34.615 0.00 0.00 0.00 3.01
901 1394 7.065803 TCTCTGTTTGAGGGCTAATTTATTTCG 59.934 37.037 0.00 0.00 42.86 3.46
903 1396 8.650143 TTCTCTGTTTGAGGGCTAATTTATTT 57.350 30.769 0.00 0.00 42.86 1.40
913 1406 0.962855 GCCCTTCTCTGTTTGAGGGC 60.963 60.000 15.71 15.71 42.86 5.19
914 1407 0.322906 GGCCCTTCTCTGTTTGAGGG 60.323 60.000 2.90 2.90 42.86 4.30
915 1408 0.401738 TGGCCCTTCTCTGTTTGAGG 59.598 55.000 0.00 0.00 42.86 3.86
936 1436 3.854666 AGATCCGAATATCCGATGCTTG 58.145 45.455 0.00 0.00 0.00 4.01
938 1438 4.543590 AAAGATCCGAATATCCGATGCT 57.456 40.909 0.00 0.00 0.00 3.79
940 1440 9.803315 TTAGATTAAAGATCCGAATATCCGATG 57.197 33.333 0.00 0.00 0.00 3.84
955 1455 5.063180 TCTTCGCCGTGTTAGATTAAAGA 57.937 39.130 0.00 0.00 0.00 2.52
956 1456 4.267928 CCTCTTCGCCGTGTTAGATTAAAG 59.732 45.833 0.00 0.00 0.00 1.85
957 1457 4.082081 TCCTCTTCGCCGTGTTAGATTAAA 60.082 41.667 0.00 0.00 0.00 1.52
960 1460 1.822990 TCCTCTTCGCCGTGTTAGATT 59.177 47.619 0.00 0.00 0.00 2.40
961 1461 1.405821 CTCCTCTTCGCCGTGTTAGAT 59.594 52.381 0.00 0.00 0.00 1.98
1110 1622 1.003355 CCACAGGTCCATCTTGCGT 60.003 57.895 0.00 0.00 0.00 5.24
1382 1894 2.357517 CCGGCATGTAGATCGGGC 60.358 66.667 0.00 0.00 38.93 6.13
1783 2994 4.129737 ACTGTCGGCATCGTCGGG 62.130 66.667 0.00 0.00 35.64 5.14
1973 3277 2.093658 TCGTCATCTTCTTGGTAAGGGC 60.094 50.000 0.00 0.00 0.00 5.19
1983 3287 0.094901 CGTCGTCGTCGTCATCTTCT 59.905 55.000 3.67 0.00 38.33 2.85
1994 3298 4.131581 CGCTCTCGTCGTCGTCGT 62.132 66.667 11.41 0.00 38.33 4.34
2000 3304 1.376424 TAAGGGTCGCTCTCGTCGT 60.376 57.895 0.00 0.00 36.96 4.34
2046 3350 1.587613 GAGCAGATGACGACGAGGC 60.588 63.158 0.00 0.00 0.00 4.70
2055 3359 5.557576 ATGTTATAAGCTGGAGCAGATGA 57.442 39.130 0.65 0.00 45.16 2.92
2124 3428 1.447838 GAAGCATCGAACCCTGCGA 60.448 57.895 3.24 0.00 43.17 5.10
2184 3488 5.004448 GGCTAGTTTTATATCCAGAAGGCC 58.996 45.833 0.00 0.00 33.74 5.19
2232 3536 4.047166 TGATCTCCCCCTTCACAATATGT 58.953 43.478 0.00 0.00 0.00 2.29
2233 3537 4.392940 GTGATCTCCCCCTTCACAATATG 58.607 47.826 0.00 0.00 39.59 1.78
2235 3539 2.777692 GGTGATCTCCCCCTTCACAATA 59.222 50.000 2.14 0.00 41.17 1.90
2334 3638 1.268234 GGAAAGCGCATCACATACTGC 60.268 52.381 11.47 0.00 35.02 4.40
2355 3659 2.357154 CCTATCCACCTCCCTTTGGTTG 60.357 54.545 0.00 0.00 35.28 3.77
2436 3824 1.480954 GCCTCTACATCTTCGGACCAA 59.519 52.381 0.00 0.00 0.00 3.67
2442 3830 2.363680 ACCATCAGCCTCTACATCTTCG 59.636 50.000 0.00 0.00 0.00 3.79
2484 3872 3.511146 TGAGTGGGATCTTGCCAATTTTC 59.489 43.478 0.00 0.00 40.43 2.29
2499 3887 2.217750 TCACATCGTTTGTTGAGTGGG 58.782 47.619 0.00 0.00 36.00 4.61
2504 3892 5.464057 ACGTTTCTATCACATCGTTTGTTGA 59.536 36.000 0.00 0.00 36.00 3.18
2520 3908 4.250464 CTCCAACATAAGCCACGTTTCTA 58.750 43.478 0.00 0.00 0.00 2.10
2580 3968 2.514824 GATGAGGGGCGGTTGAGC 60.515 66.667 0.00 0.00 0.00 4.26
2616 4004 1.104577 GTTTGTCAACCTCCCGGCAA 61.105 55.000 0.00 0.00 0.00 4.52
2685 4248 5.049405 CACCAACACTTCTTCCACTTCATAC 60.049 44.000 0.00 0.00 0.00 2.39
2724 4287 7.147567 TGTGGTATATGCATAGTTTCTTCCTCA 60.148 37.037 12.79 6.58 0.00 3.86
2788 4351 0.623324 TCCGGGGGTGATTCATTCCT 60.623 55.000 0.00 0.00 0.00 3.36
2804 4367 1.332997 GAGATTTGCTGCCATCTTCCG 59.667 52.381 11.49 0.00 29.41 4.30
2806 4369 2.358267 CAGGAGATTTGCTGCCATCTTC 59.642 50.000 11.49 9.99 35.92 2.87
2853 4492 1.810151 GCTTTGCCACCACGATAAGAA 59.190 47.619 0.00 0.00 0.00 2.52
2913 5186 3.450817 TCTCAGAAGAAACACTGTCCACA 59.549 43.478 0.00 0.00 35.84 4.17
2927 5200 4.689812 CACCATTGTTCTCACTCTCAGAAG 59.310 45.833 0.00 0.00 30.32 2.85
3137 6251 4.495422 GGAAATCTGAGACAAGTTAGCGA 58.505 43.478 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.