Multiple sequence alignment - TraesCS5B01G421500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G421500 chr5B 100.000 2432 0 0 1 2432 596971581 596974012 0.000000e+00 4492.0
1 TraesCS5B01G421500 chr5B 83.700 908 95 28 702 1576 596908611 596909498 0.000000e+00 808.0
2 TraesCS5B01G421500 chr5B 94.030 67 3 1 426 491 72094102 72094036 1.540000e-17 100.0
3 TraesCS5B01G421500 chr5D 94.552 1138 40 11 484 1617 485917735 485918854 0.000000e+00 1738.0
4 TraesCS5B01G421500 chr5D 91.073 941 58 7 677 1617 485765886 485766800 0.000000e+00 1249.0
5 TraesCS5B01G421500 chr5D 91.270 756 53 6 684 1439 485602386 485603128 0.000000e+00 1018.0
6 TraesCS5B01G421500 chr5D 90.094 747 37 12 676 1413 485737969 485738687 0.000000e+00 935.0
7 TraesCS5B01G421500 chr5D 81.759 1069 110 42 540 1576 485350364 485351379 0.000000e+00 815.0
8 TraesCS5B01G421500 chr5D 84.404 763 76 21 873 1617 485274666 485275403 0.000000e+00 710.0
9 TraesCS5B01G421500 chr5D 93.640 456 23 5 1816 2265 481271636 481271181 0.000000e+00 676.0
10 TraesCS5B01G421500 chr5D 83.469 369 44 10 1212 1576 485611046 485611401 6.480000e-86 327.0
11 TraesCS5B01G421500 chr5D 94.686 207 11 0 1617 1823 481271870 481271664 3.020000e-84 322.0
12 TraesCS5B01G421500 chr5D 91.270 126 4 5 1490 1609 485603128 485603252 5.380000e-37 165.0
13 TraesCS5B01G421500 chr5D 94.118 85 5 0 2348 2432 481271179 481271095 1.960000e-26 130.0
14 TraesCS5B01G421500 chr3A 95.520 625 26 2 1810 2432 55257844 55258468 0.000000e+00 998.0
15 TraesCS5B01G421500 chr3A 91.827 208 12 3 1617 1824 55257621 55257823 3.960000e-73 285.0
16 TraesCS5B01G421500 chr3A 90.909 77 4 3 410 484 115383610 115383535 1.540000e-17 100.0
17 TraesCS5B01G421500 chr3A 89.610 77 5 3 410 484 115834405 115834330 7.160000e-16 95.3
18 TraesCS5B01G421500 chr6A 94.194 620 31 4 1816 2430 437609563 437608944 0.000000e+00 941.0
19 TraesCS5B01G421500 chr6A 92.754 207 15 0 1617 1823 437609797 437609591 1.410000e-77 300.0
20 TraesCS5B01G421500 chr2D 93.569 622 35 3 1816 2432 135316469 135315848 0.000000e+00 922.0
21 TraesCS5B01G421500 chr2D 94.203 207 12 0 1617 1823 135316703 135316497 1.400000e-82 316.0
22 TraesCS5B01G421500 chr5A 87.469 798 66 16 677 1461 606558159 606558935 0.000000e+00 889.0
23 TraesCS5B01G421500 chr5A 88.243 740 45 14 903 1617 606696054 606696776 0.000000e+00 846.0
24 TraesCS5B01G421500 chr5A 83.656 930 104 21 677 1576 606541863 606542774 0.000000e+00 832.0
25 TraesCS5B01G421500 chr5A 81.649 970 109 32 683 1609 606538009 606538952 0.000000e+00 741.0
26 TraesCS5B01G421500 chr5A 83.617 824 90 26 783 1581 606531462 606532265 0.000000e+00 732.0
27 TraesCS5B01G421500 chr6B 95.643 482 17 2 3 483 568870655 568870177 0.000000e+00 771.0
28 TraesCS5B01G421500 chr7D 88.694 628 60 6 1810 2432 573439604 573440225 0.000000e+00 756.0
29 TraesCS5B01G421500 chr7D 92.593 81 5 1 404 483 400416811 400416891 5.490000e-22 115.0
30 TraesCS5B01G421500 chr7B 88.961 616 63 4 1822 2432 632199287 632199902 0.000000e+00 756.0
31 TraesCS5B01G421500 chr2B 94.286 490 20 6 7 493 48879452 48878968 0.000000e+00 743.0
32 TraesCS5B01G421500 chr6D 93.595 484 26 5 1 483 97917911 97918390 0.000000e+00 717.0
33 TraesCS5B01G421500 chr6D 89.130 92 9 1 404 494 156432688 156432597 1.980000e-21 113.0
34 TraesCS5B01G421500 chr7A 91.489 235 20 0 2198 2432 663383966 663384200 8.390000e-85 324.0
35 TraesCS5B01G421500 chr7A 75.556 180 22 12 117 276 730730598 730730421 4.340000e-08 69.4
36 TraesCS5B01G421500 chr4D 91.489 235 18 2 1810 2042 404436464 404436698 3.020000e-84 322.0
37 TraesCS5B01G421500 chr4D 92.788 208 15 0 1616 1823 404436235 404436442 3.930000e-78 302.0
38 TraesCS5B01G421500 chr1D 91.463 82 6 1 404 484 467315152 467315233 7.110000e-21 111.0
39 TraesCS5B01G421500 chr4A 76.190 168 27 10 13 177 681109681 681109838 2.590000e-10 76.8
40 TraesCS5B01G421500 chr1B 76.190 168 27 10 13 177 161582364 161582521 2.590000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G421500 chr5B 596971581 596974012 2431 False 4492.0 4492 100.0000 1 2432 1 chr5B.!!$F2 2431
1 TraesCS5B01G421500 chr5B 596908611 596909498 887 False 808.0 808 83.7000 702 1576 1 chr5B.!!$F1 874
2 TraesCS5B01G421500 chr5D 485917735 485918854 1119 False 1738.0 1738 94.5520 484 1617 1 chr5D.!!$F6 1133
3 TraesCS5B01G421500 chr5D 485765886 485766800 914 False 1249.0 1249 91.0730 677 1617 1 chr5D.!!$F5 940
4 TraesCS5B01G421500 chr5D 485737969 485738687 718 False 935.0 935 90.0940 676 1413 1 chr5D.!!$F4 737
5 TraesCS5B01G421500 chr5D 485350364 485351379 1015 False 815.0 815 81.7590 540 1576 1 chr5D.!!$F2 1036
6 TraesCS5B01G421500 chr5D 485274666 485275403 737 False 710.0 710 84.4040 873 1617 1 chr5D.!!$F1 744
7 TraesCS5B01G421500 chr5D 485602386 485603252 866 False 591.5 1018 91.2700 684 1609 2 chr5D.!!$F7 925
8 TraesCS5B01G421500 chr5D 481271095 481271870 775 True 376.0 676 94.1480 1617 2432 3 chr5D.!!$R1 815
9 TraesCS5B01G421500 chr3A 55257621 55258468 847 False 641.5 998 93.6735 1617 2432 2 chr3A.!!$F1 815
10 TraesCS5B01G421500 chr6A 437608944 437609797 853 True 620.5 941 93.4740 1617 2430 2 chr6A.!!$R1 813
11 TraesCS5B01G421500 chr2D 135315848 135316703 855 True 619.0 922 93.8860 1617 2432 2 chr2D.!!$R1 815
12 TraesCS5B01G421500 chr5A 606558159 606558935 776 False 889.0 889 87.4690 677 1461 1 chr5A.!!$F2 784
13 TraesCS5B01G421500 chr5A 606696054 606696776 722 False 846.0 846 88.2430 903 1617 1 chr5A.!!$F3 714
14 TraesCS5B01G421500 chr5A 606538009 606542774 4765 False 786.5 832 82.6525 677 1609 2 chr5A.!!$F4 932
15 TraesCS5B01G421500 chr5A 606531462 606532265 803 False 732.0 732 83.6170 783 1581 1 chr5A.!!$F1 798
16 TraesCS5B01G421500 chr7D 573439604 573440225 621 False 756.0 756 88.6940 1810 2432 1 chr7D.!!$F2 622
17 TraesCS5B01G421500 chr7B 632199287 632199902 615 False 756.0 756 88.9610 1822 2432 1 chr7B.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.107945 AAGCGAGAGAACATCCCAGC 60.108 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 5155 0.658897 TCGACGCCTTTGTTTTCACC 59.341 50.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.380064 ACATTGGACAGGCAAAAGGA 57.620 45.000 0.00 0.00 0.00 3.36
21 22 3.037549 ACATTGGACAGGCAAAAGGAAA 58.962 40.909 0.00 0.00 0.00 3.13
22 23 3.454082 ACATTGGACAGGCAAAAGGAAAA 59.546 39.130 0.00 0.00 0.00 2.29
23 24 4.080638 ACATTGGACAGGCAAAAGGAAAAA 60.081 37.500 0.00 0.00 0.00 1.94
46 47 7.929941 AAAATAAAACAGAAAAACCAGGCAA 57.070 28.000 0.00 0.00 0.00 4.52
47 48 7.929941 AAATAAAACAGAAAAACCAGGCAAA 57.070 28.000 0.00 0.00 0.00 3.68
48 49 7.929941 AATAAAACAGAAAAACCAGGCAAAA 57.070 28.000 0.00 0.00 0.00 2.44
49 50 7.929941 ATAAAACAGAAAAACCAGGCAAAAA 57.070 28.000 0.00 0.00 0.00 1.94
50 51 5.621197 AAACAGAAAAACCAGGCAAAAAC 57.379 34.783 0.00 0.00 0.00 2.43
51 52 4.278975 ACAGAAAAACCAGGCAAAAACA 57.721 36.364 0.00 0.00 0.00 2.83
52 53 4.646572 ACAGAAAAACCAGGCAAAAACAA 58.353 34.783 0.00 0.00 0.00 2.83
53 54 4.454161 ACAGAAAAACCAGGCAAAAACAAC 59.546 37.500 0.00 0.00 0.00 3.32
54 55 4.453819 CAGAAAAACCAGGCAAAAACAACA 59.546 37.500 0.00 0.00 0.00 3.33
55 56 5.123661 CAGAAAAACCAGGCAAAAACAACAT 59.876 36.000 0.00 0.00 0.00 2.71
56 57 6.314896 CAGAAAAACCAGGCAAAAACAACATA 59.685 34.615 0.00 0.00 0.00 2.29
57 58 6.881602 AGAAAAACCAGGCAAAAACAACATAA 59.118 30.769 0.00 0.00 0.00 1.90
58 59 7.391833 AGAAAAACCAGGCAAAAACAACATAAA 59.608 29.630 0.00 0.00 0.00 1.40
59 60 7.454260 AAAACCAGGCAAAAACAACATAAAA 57.546 28.000 0.00 0.00 0.00 1.52
61 62 5.739959 ACCAGGCAAAAACAACATAAAACT 58.260 33.333 0.00 0.00 0.00 2.66
62 63 6.879400 ACCAGGCAAAAACAACATAAAACTA 58.121 32.000 0.00 0.00 0.00 2.24
63 64 6.983890 ACCAGGCAAAAACAACATAAAACTAG 59.016 34.615 0.00 0.00 0.00 2.57
64 65 7.147811 ACCAGGCAAAAACAACATAAAACTAGA 60.148 33.333 0.00 0.00 0.00 2.43
67 68 9.093970 AGGCAAAAACAACATAAAACTAGAAAC 57.906 29.630 0.00 0.00 0.00 2.78
68 69 8.053653 GGCAAAAACAACATAAAACTAGAAACG 58.946 33.333 0.00 0.00 0.00 3.60
69 70 8.053653 GCAAAAACAACATAAAACTAGAAACGG 58.946 33.333 0.00 0.00 0.00 4.44
70 71 8.536407 CAAAAACAACATAAAACTAGAAACGGG 58.464 33.333 0.00 0.00 0.00 5.28
71 72 5.952526 ACAACATAAAACTAGAAACGGGG 57.047 39.130 0.00 0.00 0.00 5.73
72 73 5.623169 ACAACATAAAACTAGAAACGGGGA 58.377 37.500 0.00 0.00 0.00 4.81
74 75 6.016860 ACAACATAAAACTAGAAACGGGGAAC 60.017 38.462 0.00 0.00 0.00 3.62
75 76 5.872963 ACATAAAACTAGAAACGGGGAACT 58.127 37.500 0.00 0.00 0.00 3.01
76 77 5.936372 ACATAAAACTAGAAACGGGGAACTC 59.064 40.000 0.00 0.00 0.00 3.01
77 78 4.426736 AAAACTAGAAACGGGGAACTCA 57.573 40.909 0.00 0.00 0.00 3.41
79 80 5.750352 AAACTAGAAACGGGGAACTCATA 57.250 39.130 0.00 0.00 0.00 2.15
80 81 4.732672 ACTAGAAACGGGGAACTCATAC 57.267 45.455 0.00 0.00 0.00 2.39
82 83 4.529377 ACTAGAAACGGGGAACTCATACAA 59.471 41.667 0.00 0.00 0.00 2.41
83 84 4.569719 AGAAACGGGGAACTCATACAAT 57.430 40.909 0.00 0.00 0.00 2.71
84 85 5.687166 AGAAACGGGGAACTCATACAATA 57.313 39.130 0.00 0.00 0.00 1.90
85 86 6.248569 AGAAACGGGGAACTCATACAATAT 57.751 37.500 0.00 0.00 0.00 1.28
86 87 7.369551 AGAAACGGGGAACTCATACAATATA 57.630 36.000 0.00 0.00 0.00 0.86
90 91 5.601313 ACGGGGAACTCATACAATATACACT 59.399 40.000 0.00 0.00 0.00 3.55
91 92 6.779049 ACGGGGAACTCATACAATATACACTA 59.221 38.462 0.00 0.00 0.00 2.74
92 93 7.039923 ACGGGGAACTCATACAATATACACTAG 60.040 40.741 0.00 0.00 0.00 2.57
94 95 8.088981 GGGGAACTCATACAATATACACTAGTG 58.911 40.741 21.44 21.44 0.00 2.74
95 96 8.088981 GGGAACTCATACAATATACACTAGTGG 58.911 40.741 26.12 10.10 34.19 4.00
96 97 7.599245 GGAACTCATACAATATACACTAGTGGC 59.401 40.741 26.12 0.00 34.19 5.01
97 98 6.994221 ACTCATACAATATACACTAGTGGCC 58.006 40.000 26.12 0.00 34.19 5.36
98 99 6.014499 ACTCATACAATATACACTAGTGGCCC 60.014 42.308 26.12 0.00 34.19 5.80
99 100 6.082031 TCATACAATATACACTAGTGGCCCT 58.918 40.000 26.12 8.32 34.19 5.19
100 101 6.557253 TCATACAATATACACTAGTGGCCCTT 59.443 38.462 26.12 11.62 34.19 3.95
101 102 5.291905 ACAATATACACTAGTGGCCCTTC 57.708 43.478 26.12 0.00 34.19 3.46
103 104 2.263895 ATACACTAGTGGCCCTTCCA 57.736 50.000 26.12 2.13 44.18 3.53
112 113 2.820037 GCCCTTCCAGTGCGCTAC 60.820 66.667 9.73 5.32 0.00 3.58
114 115 1.003839 CCCTTCCAGTGCGCTACAA 60.004 57.895 9.73 0.00 0.00 2.41
115 116 1.021390 CCCTTCCAGTGCGCTACAAG 61.021 60.000 9.73 4.93 0.00 3.16
117 118 1.608025 CCTTCCAGTGCGCTACAAGAA 60.608 52.381 9.73 10.81 0.00 2.52
118 119 1.728971 CTTCCAGTGCGCTACAAGAAG 59.271 52.381 9.73 15.67 35.64 2.85
119 120 0.966179 TCCAGTGCGCTACAAGAAGA 59.034 50.000 9.73 0.00 0.00 2.87
120 121 1.343142 TCCAGTGCGCTACAAGAAGAA 59.657 47.619 9.73 0.00 0.00 2.52
121 122 1.728971 CCAGTGCGCTACAAGAAGAAG 59.271 52.381 9.73 0.00 0.00 2.85
122 123 2.408050 CAGTGCGCTACAAGAAGAAGT 58.592 47.619 9.73 0.00 0.00 3.01
123 124 3.575630 CAGTGCGCTACAAGAAGAAGTA 58.424 45.455 9.73 0.00 0.00 2.24
124 125 3.610242 CAGTGCGCTACAAGAAGAAGTAG 59.390 47.826 9.73 0.00 40.45 2.57
129 130 2.541556 CTACAAGAAGAAGTAGCGCCC 58.458 52.381 2.29 0.00 32.25 6.13
131 132 1.338200 ACAAGAAGAAGTAGCGCCCAG 60.338 52.381 2.29 0.00 0.00 4.45
132 133 1.066858 CAAGAAGAAGTAGCGCCCAGA 60.067 52.381 2.29 0.00 0.00 3.86
133 134 1.267121 AGAAGAAGTAGCGCCCAGAA 58.733 50.000 2.29 0.00 0.00 3.02
135 136 2.038557 AGAAGAAGTAGCGCCCAGAAAA 59.961 45.455 2.29 0.00 0.00 2.29
136 137 2.561478 AGAAGTAGCGCCCAGAAAAA 57.439 45.000 2.29 0.00 0.00 1.94
137 138 3.073274 AGAAGTAGCGCCCAGAAAAAT 57.927 42.857 2.29 0.00 0.00 1.82
139 140 2.489938 AGTAGCGCCCAGAAAAATCA 57.510 45.000 2.29 0.00 0.00 2.57
142 143 1.327303 AGCGCCCAGAAAAATCACAA 58.673 45.000 2.29 0.00 0.00 3.33
144 145 1.669795 GCGCCCAGAAAAATCACAAGG 60.670 52.381 0.00 0.00 0.00 3.61
145 146 1.669795 CGCCCAGAAAAATCACAAGGC 60.670 52.381 0.00 0.00 35.78 4.35
146 147 1.344114 GCCCAGAAAAATCACAAGGCA 59.656 47.619 0.00 0.00 39.01 4.75
148 149 3.557686 GCCCAGAAAAATCACAAGGCAAT 60.558 43.478 0.00 0.00 39.01 3.56
150 151 5.792741 CCCAGAAAAATCACAAGGCAATAA 58.207 37.500 0.00 0.00 0.00 1.40
152 153 6.709846 CCCAGAAAAATCACAAGGCAATAAAA 59.290 34.615 0.00 0.00 0.00 1.52
154 155 9.434420 CCAGAAAAATCACAAGGCAATAAAATA 57.566 29.630 0.00 0.00 0.00 1.40
162 163 8.422973 TCACAAGGCAATAAAATATCATTTGC 57.577 30.769 0.00 0.00 41.40 3.68
169 170 7.065283 GCAATAAAATATCATTTGCCGAAAGC 58.935 34.615 0.00 0.00 44.14 3.51
178 179 3.567473 GCCGAAAGCACCTGTCTC 58.433 61.111 0.00 0.00 42.97 3.36
179 180 1.004440 GCCGAAAGCACCTGTCTCT 60.004 57.895 0.00 0.00 42.97 3.10
180 181 0.246635 GCCGAAAGCACCTGTCTCTA 59.753 55.000 0.00 0.00 42.97 2.43
181 182 1.337823 GCCGAAAGCACCTGTCTCTAA 60.338 52.381 0.00 0.00 42.97 2.10
182 183 2.338500 CCGAAAGCACCTGTCTCTAAC 58.662 52.381 0.00 0.00 0.00 2.34
184 185 2.701107 GAAAGCACCTGTCTCTAACCC 58.299 52.381 0.00 0.00 0.00 4.11
185 186 0.608640 AAGCACCTGTCTCTAACCCG 59.391 55.000 0.00 0.00 0.00 5.28
187 188 1.898154 CACCTGTCTCTAACCCGGG 59.102 63.158 22.25 22.25 0.00 5.73
188 189 1.988406 ACCTGTCTCTAACCCGGGC 60.988 63.158 24.08 1.93 0.00 6.13
190 191 1.686110 CTGTCTCTAACCCGGGCCT 60.686 63.158 24.08 11.27 0.00 5.19
191 192 0.396695 CTGTCTCTAACCCGGGCCTA 60.397 60.000 24.08 11.92 0.00 3.93
193 194 1.500303 TGTCTCTAACCCGGGCCTATA 59.500 52.381 24.08 8.11 0.00 1.31
194 195 2.111255 TGTCTCTAACCCGGGCCTATAT 59.889 50.000 24.08 0.00 0.00 0.86
195 196 2.759535 GTCTCTAACCCGGGCCTATATC 59.240 54.545 24.08 2.87 0.00 1.63
196 197 2.653366 TCTCTAACCCGGGCCTATATCT 59.347 50.000 24.08 0.00 0.00 1.98
197 198 3.077088 TCTCTAACCCGGGCCTATATCTT 59.923 47.826 24.08 7.24 0.00 2.40
198 199 3.838903 CTCTAACCCGGGCCTATATCTTT 59.161 47.826 24.08 6.39 0.00 2.52
200 201 3.965470 AACCCGGGCCTATATCTTTTT 57.035 42.857 24.08 0.00 0.00 1.94
220 221 4.729227 TTTTGTTCAACACCTTCTTCCC 57.271 40.909 0.00 0.00 0.00 3.97
221 222 3.662759 TTGTTCAACACCTTCTTCCCT 57.337 42.857 0.00 0.00 0.00 4.20
222 223 2.930950 TGTTCAACACCTTCTTCCCTG 58.069 47.619 0.00 0.00 0.00 4.45
223 224 2.241176 TGTTCAACACCTTCTTCCCTGT 59.759 45.455 0.00 0.00 0.00 4.00
224 225 2.618709 GTTCAACACCTTCTTCCCTGTG 59.381 50.000 0.00 0.00 34.92 3.66
226 227 3.042682 TCAACACCTTCTTCCCTGTGTA 58.957 45.455 0.00 0.00 40.83 2.90
227 228 3.456644 TCAACACCTTCTTCCCTGTGTAA 59.543 43.478 0.00 0.00 40.83 2.41
228 229 3.487120 ACACCTTCTTCCCTGTGTAAC 57.513 47.619 0.00 0.00 39.98 2.50
245 246 5.565695 GTGTAACAAAAACAAGCGAGAGAA 58.434 37.500 0.00 0.00 36.32 2.87
248 249 4.900635 ACAAAAACAAGCGAGAGAACAT 57.099 36.364 0.00 0.00 0.00 2.71
249 250 4.848757 ACAAAAACAAGCGAGAGAACATC 58.151 39.130 0.00 0.00 0.00 3.06
250 251 4.222114 CAAAAACAAGCGAGAGAACATCC 58.778 43.478 0.00 0.00 0.00 3.51
251 252 2.100605 AACAAGCGAGAGAACATCCC 57.899 50.000 0.00 0.00 0.00 3.85
252 253 0.976641 ACAAGCGAGAGAACATCCCA 59.023 50.000 0.00 0.00 0.00 4.37
253 254 1.066573 ACAAGCGAGAGAACATCCCAG 60.067 52.381 0.00 0.00 0.00 4.45
254 255 0.107945 AAGCGAGAGAACATCCCAGC 60.108 55.000 0.00 0.00 0.00 4.85
257 258 0.250234 CGAGAGAACATCCCAGCCAA 59.750 55.000 0.00 0.00 0.00 4.52
258 259 1.339055 CGAGAGAACATCCCAGCCAAA 60.339 52.381 0.00 0.00 0.00 3.28
259 260 2.795329 GAGAGAACATCCCAGCCAAAA 58.205 47.619 0.00 0.00 0.00 2.44
260 261 2.751806 GAGAGAACATCCCAGCCAAAAG 59.248 50.000 0.00 0.00 0.00 2.27
261 262 2.376518 AGAGAACATCCCAGCCAAAAGA 59.623 45.455 0.00 0.00 0.00 2.52
265 266 1.425066 ACATCCCAGCCAAAAGACAGA 59.575 47.619 0.00 0.00 0.00 3.41
266 267 2.158475 ACATCCCAGCCAAAAGACAGAA 60.158 45.455 0.00 0.00 0.00 3.02
269 270 2.031120 CCCAGCCAAAAGACAGAAACA 58.969 47.619 0.00 0.00 0.00 2.83
270 271 2.430332 CCCAGCCAAAAGACAGAAACAA 59.570 45.455 0.00 0.00 0.00 2.83
271 272 3.118811 CCCAGCCAAAAGACAGAAACAAA 60.119 43.478 0.00 0.00 0.00 2.83
272 273 4.114794 CCAGCCAAAAGACAGAAACAAAG 58.885 43.478 0.00 0.00 0.00 2.77
273 274 4.142182 CCAGCCAAAAGACAGAAACAAAGA 60.142 41.667 0.00 0.00 0.00 2.52
275 276 5.868801 CAGCCAAAAGACAGAAACAAAGAAA 59.131 36.000 0.00 0.00 0.00 2.52
276 277 6.035327 CAGCCAAAAGACAGAAACAAAGAAAG 59.965 38.462 0.00 0.00 0.00 2.62
277 278 6.071391 AGCCAAAAGACAGAAACAAAGAAAGA 60.071 34.615 0.00 0.00 0.00 2.52
279 280 7.201470 GCCAAAAGACAGAAACAAAGAAAGAAG 60.201 37.037 0.00 0.00 0.00 2.85
280 281 7.201470 CCAAAAGACAGAAACAAAGAAAGAAGC 60.201 37.037 0.00 0.00 0.00 3.86
281 282 5.506686 AGACAGAAACAAAGAAAGAAGCC 57.493 39.130 0.00 0.00 0.00 4.35
282 283 4.339530 AGACAGAAACAAAGAAAGAAGCCC 59.660 41.667 0.00 0.00 0.00 5.19
285 286 3.068732 AGAAACAAAGAAAGAAGCCCAGC 59.931 43.478 0.00 0.00 0.00 4.85
286 287 2.371658 ACAAAGAAAGAAGCCCAGCT 57.628 45.000 0.00 0.00 42.56 4.24
287 288 1.959282 ACAAAGAAAGAAGCCCAGCTG 59.041 47.619 6.78 6.78 39.62 4.24
288 289 2.233271 CAAAGAAAGAAGCCCAGCTGA 58.767 47.619 17.39 0.00 39.62 4.26
290 291 2.664402 AGAAAGAAGCCCAGCTGAAA 57.336 45.000 17.39 0.00 39.62 2.69
291 292 3.166560 AGAAAGAAGCCCAGCTGAAAT 57.833 42.857 17.39 0.00 39.62 2.17
292 293 3.504375 AGAAAGAAGCCCAGCTGAAATT 58.496 40.909 17.39 6.10 39.62 1.82
296 297 3.766545 AGAAGCCCAGCTGAAATTAACA 58.233 40.909 17.39 0.00 39.62 2.41
298 299 4.588528 AGAAGCCCAGCTGAAATTAACAAA 59.411 37.500 17.39 0.00 39.62 2.83
300 301 3.640967 AGCCCAGCTGAAATTAACAAACA 59.359 39.130 17.39 0.00 37.57 2.83
301 302 4.100808 AGCCCAGCTGAAATTAACAAACAA 59.899 37.500 17.39 0.00 37.57 2.83
302 303 4.813697 GCCCAGCTGAAATTAACAAACAAA 59.186 37.500 17.39 0.00 0.00 2.83
303 304 5.469760 GCCCAGCTGAAATTAACAAACAAAT 59.530 36.000 17.39 0.00 0.00 2.32
306 307 9.050601 CCCAGCTGAAATTAACAAACAAATAAA 57.949 29.630 17.39 0.00 0.00 1.40
307 308 9.862585 CCAGCTGAAATTAACAAACAAATAAAC 57.137 29.630 17.39 0.00 0.00 2.01
321 322 7.468922 AACAAATAAACAAGCAGAAAAGCTC 57.531 32.000 0.00 0.00 45.89 4.09
322 323 6.572519 ACAAATAAACAAGCAGAAAAGCTCA 58.427 32.000 0.00 0.00 45.89 4.26
323 324 6.698766 ACAAATAAACAAGCAGAAAAGCTCAG 59.301 34.615 0.00 0.00 45.89 3.35
324 325 6.639632 AATAAACAAGCAGAAAAGCTCAGA 57.360 33.333 0.00 0.00 45.89 3.27
325 326 4.989279 AAACAAGCAGAAAAGCTCAGAA 57.011 36.364 0.00 0.00 45.89 3.02
326 327 4.564940 AACAAGCAGAAAAGCTCAGAAG 57.435 40.909 0.00 0.00 45.89 2.85
327 328 3.549794 ACAAGCAGAAAAGCTCAGAAGT 58.450 40.909 0.00 0.00 45.89 3.01
328 329 3.563390 ACAAGCAGAAAAGCTCAGAAGTC 59.437 43.478 0.00 0.00 45.89 3.01
329 330 3.482156 AGCAGAAAAGCTCAGAAGTCA 57.518 42.857 0.00 0.00 42.18 3.41
330 331 4.018484 AGCAGAAAAGCTCAGAAGTCAT 57.982 40.909 0.00 0.00 42.18 3.06
331 332 3.752222 AGCAGAAAAGCTCAGAAGTCATG 59.248 43.478 0.00 0.00 42.18 3.07
332 333 3.670091 GCAGAAAAGCTCAGAAGTCATGC 60.670 47.826 0.00 0.00 0.00 4.06
333 334 2.740981 AGAAAAGCTCAGAAGTCATGCG 59.259 45.455 0.00 0.00 0.00 4.73
334 335 1.446907 AAAGCTCAGAAGTCATGCGG 58.553 50.000 0.00 0.00 0.00 5.69
335 336 0.610174 AAGCTCAGAAGTCATGCGGA 59.390 50.000 0.00 0.00 0.00 5.54
336 337 0.829333 AGCTCAGAAGTCATGCGGAT 59.171 50.000 0.00 0.00 0.00 4.18
337 338 2.034878 AGCTCAGAAGTCATGCGGATA 58.965 47.619 0.00 0.00 0.00 2.59
338 339 2.131183 GCTCAGAAGTCATGCGGATAC 58.869 52.381 0.00 0.00 0.00 2.24
339 340 2.481969 GCTCAGAAGTCATGCGGATACA 60.482 50.000 0.00 0.00 0.00 2.29
340 341 3.379240 CTCAGAAGTCATGCGGATACAG 58.621 50.000 0.00 0.00 0.00 2.74
342 343 1.202580 AGAAGTCATGCGGATACAGCC 60.203 52.381 0.00 0.00 35.65 4.85
343 344 0.179045 AAGTCATGCGGATACAGCCC 60.179 55.000 0.00 0.00 35.65 5.19
344 345 1.146041 GTCATGCGGATACAGCCCA 59.854 57.895 0.00 0.00 35.65 5.36
345 346 0.463654 GTCATGCGGATACAGCCCAA 60.464 55.000 0.00 0.00 35.65 4.12
347 348 0.747644 CATGCGGATACAGCCCAACA 60.748 55.000 0.00 0.00 35.65 3.33
348 349 0.464373 ATGCGGATACAGCCCAACAG 60.464 55.000 0.00 0.00 35.65 3.16
367 368 4.513519 CGCCACGCTAGGAATCAA 57.486 55.556 0.00 0.00 0.00 2.57
368 369 2.762360 CGCCACGCTAGGAATCAAA 58.238 52.632 0.00 0.00 0.00 2.69
369 370 0.373716 CGCCACGCTAGGAATCAAAC 59.626 55.000 0.00 0.00 0.00 2.93
370 371 1.448985 GCCACGCTAGGAATCAAACA 58.551 50.000 0.00 0.00 0.00 2.83
371 372 2.017049 GCCACGCTAGGAATCAAACAT 58.983 47.619 0.00 0.00 0.00 2.71
372 373 2.223340 GCCACGCTAGGAATCAAACATG 60.223 50.000 0.00 0.00 0.00 3.21
373 374 2.223340 CCACGCTAGGAATCAAACATGC 60.223 50.000 0.00 0.00 0.00 4.06
374 375 1.665679 ACGCTAGGAATCAAACATGCG 59.334 47.619 0.00 0.00 46.21 4.73
376 377 2.288666 GCTAGGAATCAAACATGCGGA 58.711 47.619 0.00 0.00 0.00 5.54
377 378 2.880890 GCTAGGAATCAAACATGCGGAT 59.119 45.455 0.00 0.00 0.00 4.18
378 379 4.065088 GCTAGGAATCAAACATGCGGATA 58.935 43.478 0.00 0.00 0.00 2.59
379 380 4.083802 GCTAGGAATCAAACATGCGGATAC 60.084 45.833 0.00 0.00 0.00 2.24
407 408 2.650196 GCGCAATGCCAGGAAACA 59.350 55.556 0.30 0.00 37.76 2.83
408 409 1.006337 GCGCAATGCCAGGAAACAA 60.006 52.632 0.30 0.00 37.76 2.83
409 410 1.010419 GCGCAATGCCAGGAAACAAG 61.010 55.000 0.30 0.00 37.76 3.16
412 413 0.971386 CAATGCCAGGAAACAAGCCT 59.029 50.000 0.00 0.00 35.75 4.58
413 414 2.170166 CAATGCCAGGAAACAAGCCTA 58.830 47.619 0.00 0.00 33.51 3.93
415 416 2.603075 TGCCAGGAAACAAGCCTAAT 57.397 45.000 0.00 0.00 33.51 1.73
416 417 2.888212 TGCCAGGAAACAAGCCTAATT 58.112 42.857 0.00 0.00 33.51 1.40
417 418 2.562298 TGCCAGGAAACAAGCCTAATTG 59.438 45.455 0.00 0.00 33.51 2.32
418 419 2.675032 GCCAGGAAACAAGCCTAATTGC 60.675 50.000 0.00 0.00 33.51 3.56
419 420 2.827921 CCAGGAAACAAGCCTAATTGCT 59.172 45.455 0.00 0.00 45.43 3.91
420 421 3.119352 CCAGGAAACAAGCCTAATTGCTC 60.119 47.826 0.00 0.00 41.80 4.26
421 422 3.760684 CAGGAAACAAGCCTAATTGCTCT 59.239 43.478 0.00 0.00 41.80 4.09
422 423 4.943705 CAGGAAACAAGCCTAATTGCTCTA 59.056 41.667 0.00 0.00 41.80 2.43
424 425 4.336713 GGAAACAAGCCTAATTGCTCTAGG 59.663 45.833 0.00 2.88 41.80 3.02
425 426 4.576330 AACAAGCCTAATTGCTCTAGGT 57.424 40.909 7.78 0.00 41.80 3.08
426 427 3.878778 ACAAGCCTAATTGCTCTAGGTG 58.121 45.455 7.78 3.24 41.80 4.00
427 428 3.519510 ACAAGCCTAATTGCTCTAGGTGA 59.480 43.478 7.78 0.00 41.80 4.02
428 429 3.828875 AGCCTAATTGCTCTAGGTGAC 57.171 47.619 7.78 0.00 36.75 3.67
430 431 3.713764 AGCCTAATTGCTCTAGGTGACAT 59.286 43.478 7.78 0.00 36.75 3.06
431 432 4.061596 GCCTAATTGCTCTAGGTGACATC 58.938 47.826 7.78 0.00 38.59 3.06
432 433 4.443457 GCCTAATTGCTCTAGGTGACATCA 60.443 45.833 7.78 0.00 38.59 3.07
433 434 5.295950 CCTAATTGCTCTAGGTGACATCAG 58.704 45.833 0.00 0.00 32.64 2.90
434 435 2.680312 TTGCTCTAGGTGACATCAGC 57.320 50.000 2.81 2.81 44.12 4.26
435 436 0.826715 TGCTCTAGGTGACATCAGCC 59.173 55.000 7.44 0.63 44.82 4.85
436 437 0.249238 GCTCTAGGTGACATCAGCCG 60.249 60.000 7.44 0.27 44.82 5.52
437 438 1.393603 CTCTAGGTGACATCAGCCGA 58.606 55.000 7.44 4.40 44.82 5.54
438 439 1.066303 CTCTAGGTGACATCAGCCGAC 59.934 57.143 7.44 0.00 44.82 4.79
439 440 1.107114 CTAGGTGACATCAGCCGACT 58.893 55.000 7.44 0.00 44.82 4.18
441 442 1.557099 AGGTGACATCAGCCGACTTA 58.443 50.000 7.44 0.00 44.82 2.24
442 443 1.478510 AGGTGACATCAGCCGACTTAG 59.521 52.381 7.44 0.00 44.82 2.18
443 444 1.476891 GGTGACATCAGCCGACTTAGA 59.523 52.381 0.00 0.00 38.34 2.10
444 445 2.531206 GTGACATCAGCCGACTTAGAC 58.469 52.381 0.00 0.00 0.00 2.59
445 446 2.164624 GTGACATCAGCCGACTTAGACT 59.835 50.000 0.00 0.00 0.00 3.24
448 449 2.159366 ACATCAGCCGACTTAGACTTCG 60.159 50.000 0.00 0.00 34.93 3.79
449 450 0.170561 TCAGCCGACTTAGACTTCGC 59.829 55.000 0.00 0.00 33.78 4.70
451 452 1.136147 GCCGACTTAGACTTCGCGA 59.864 57.895 3.71 3.71 33.78 5.87
452 453 0.455633 GCCGACTTAGACTTCGCGAA 60.456 55.000 22.01 22.01 33.78 4.70
463 464 2.522372 CTTCGCGAAGTCTAAGTCGA 57.478 50.000 34.97 4.60 39.64 4.20
465 466 1.436600 TCGCGAAGTCTAAGTCGACT 58.563 50.000 13.58 13.58 45.73 4.18
467 468 1.128136 CGCGAAGTCTAAGTCGACTCA 59.872 52.381 20.33 2.47 43.14 3.41
469 470 2.415857 GCGAAGTCTAAGTCGACTCAGA 59.584 50.000 20.33 17.39 43.14 3.27
473 474 4.822685 AGTCTAAGTCGACTCAGACCTA 57.177 45.455 35.12 16.53 40.04 3.08
474 475 4.761975 AGTCTAAGTCGACTCAGACCTAG 58.238 47.826 35.12 23.62 40.04 3.02
475 476 4.467082 AGTCTAAGTCGACTCAGACCTAGA 59.533 45.833 35.12 25.17 40.04 2.43
476 477 4.757594 TCTAAGTCGACTCAGACCTAGAC 58.242 47.826 20.33 0.00 38.53 2.59
477 478 3.420300 AAGTCGACTCAGACCTAGACA 57.580 47.619 20.33 0.00 41.83 3.41
478 479 3.420300 AGTCGACTCAGACCTAGACAA 57.580 47.619 13.58 0.00 41.83 3.18
479 480 3.752665 AGTCGACTCAGACCTAGACAAA 58.247 45.455 13.58 0.00 41.83 2.83
480 481 3.502979 AGTCGACTCAGACCTAGACAAAC 59.497 47.826 13.58 0.00 41.83 2.93
481 482 2.818432 TCGACTCAGACCTAGACAAACC 59.182 50.000 0.00 0.00 0.00 3.27
482 483 2.094649 CGACTCAGACCTAGACAAACCC 60.095 54.545 0.00 0.00 0.00 4.11
492 493 8.417884 CAGACCTAGACAAACCCAAAAATTAAA 58.582 33.333 0.00 0.00 0.00 1.52
505 506 7.142680 CCCAAAAATTAAAGAAGAACAGCGTA 58.857 34.615 0.00 0.00 0.00 4.42
532 533 1.260561 GTGGGCTTGCGTATATTGTCG 59.739 52.381 0.00 0.00 0.00 4.35
547 548 1.375551 TGTCGAGCAGCTACGATACA 58.624 50.000 16.58 10.68 40.50 2.29
605 606 9.288576 CCTTACCATGAAATTCTATGATGCTAA 57.711 33.333 0.00 0.00 0.00 3.09
956 4181 1.822990 TCACCTCCCACATACGAGAAC 59.177 52.381 0.00 0.00 0.00 3.01
1217 4474 4.082523 ACCCATGCCGTCGGTCAG 62.083 66.667 13.94 2.60 0.00 3.51
1329 4604 1.004560 CACAGTGACGATGGCACCT 60.005 57.895 0.00 0.00 36.95 4.00
1391 4666 0.739813 CCCTTCGTCCCGAATGTGAC 60.740 60.000 0.00 0.00 44.85 3.67
1472 4749 0.107508 CTCGCCCTGTCCATGATGTT 60.108 55.000 0.00 0.00 0.00 2.71
1719 5079 2.187946 GACCTGCTCCATCCACCG 59.812 66.667 0.00 0.00 0.00 4.94
1744 5104 1.122632 TAGACACGCCCACCCTGAAA 61.123 55.000 0.00 0.00 0.00 2.69
1786 5146 2.032924 GGCAACCCTATTACATGAACGC 59.967 50.000 0.00 0.00 0.00 4.84
1795 5155 7.148306 ACCCTATTACATGAACGCTTACAAAAG 60.148 37.037 0.00 0.00 35.68 2.27
1802 5162 5.312120 TGAACGCTTACAAAAGGTGAAAA 57.688 34.783 0.00 0.00 32.98 2.29
1831 5227 1.901085 GAAGGACGCACTGGAGGAT 59.099 57.895 0.00 0.00 0.00 3.24
2019 5416 1.874129 TAACCTCACCATGGTCCGAT 58.126 50.000 16.53 3.11 36.69 4.18
2091 5488 9.828852 GCTGCATCAAAATTGATTTTAATGAAA 57.171 25.926 13.85 3.57 45.13 2.69
2135 5535 2.063774 CCGGGTCTGGTGTTACCTT 58.936 57.895 0.00 0.00 39.58 3.50
2341 5743 1.265236 TGCCATGGGATTGTTTGACC 58.735 50.000 15.13 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.380064 TCCTTTTGCCTGTCCAATGT 57.620 45.000 0.00 0.00 0.00 2.71
1 2 3.749665 TTTCCTTTTGCCTGTCCAATG 57.250 42.857 0.00 0.00 0.00 2.82
2 3 4.769345 TTTTTCCTTTTGCCTGTCCAAT 57.231 36.364 0.00 0.00 0.00 3.16
21 22 7.929941 TGCCTGGTTTTTCTGTTTTATTTTT 57.070 28.000 0.00 0.00 0.00 1.94
22 23 7.929941 TTGCCTGGTTTTTCTGTTTTATTTT 57.070 28.000 0.00 0.00 0.00 1.82
23 24 7.929941 TTTGCCTGGTTTTTCTGTTTTATTT 57.070 28.000 0.00 0.00 0.00 1.40
24 25 7.929941 TTTTGCCTGGTTTTTCTGTTTTATT 57.070 28.000 0.00 0.00 0.00 1.40
25 26 7.391833 TGTTTTTGCCTGGTTTTTCTGTTTTAT 59.608 29.630 0.00 0.00 0.00 1.40
26 27 6.710744 TGTTTTTGCCTGGTTTTTCTGTTTTA 59.289 30.769 0.00 0.00 0.00 1.52
28 29 5.066593 TGTTTTTGCCTGGTTTTTCTGTTT 58.933 33.333 0.00 0.00 0.00 2.83
29 30 4.646572 TGTTTTTGCCTGGTTTTTCTGTT 58.353 34.783 0.00 0.00 0.00 3.16
31 32 4.453819 TGTTGTTTTTGCCTGGTTTTTCTG 59.546 37.500 0.00 0.00 0.00 3.02
33 34 5.559427 ATGTTGTTTTTGCCTGGTTTTTC 57.441 34.783 0.00 0.00 0.00 2.29
34 35 7.454260 TTTATGTTGTTTTTGCCTGGTTTTT 57.546 28.000 0.00 0.00 0.00 1.94
35 36 7.175816 AGTTTTATGTTGTTTTTGCCTGGTTTT 59.824 29.630 0.00 0.00 0.00 2.43
38 39 5.739959 AGTTTTATGTTGTTTTTGCCTGGT 58.260 33.333 0.00 0.00 0.00 4.00
40 41 8.641499 TTCTAGTTTTATGTTGTTTTTGCCTG 57.359 30.769 0.00 0.00 0.00 4.85
41 42 9.093970 GTTTCTAGTTTTATGTTGTTTTTGCCT 57.906 29.630 0.00 0.00 0.00 4.75
42 43 8.053653 CGTTTCTAGTTTTATGTTGTTTTTGCC 58.946 33.333 0.00 0.00 0.00 4.52
43 44 8.053653 CCGTTTCTAGTTTTATGTTGTTTTTGC 58.946 33.333 0.00 0.00 0.00 3.68
44 45 8.536407 CCCGTTTCTAGTTTTATGTTGTTTTTG 58.464 33.333 0.00 0.00 0.00 2.44
46 47 7.068470 TCCCCGTTTCTAGTTTTATGTTGTTTT 59.932 33.333 0.00 0.00 0.00 2.43
47 48 6.546772 TCCCCGTTTCTAGTTTTATGTTGTTT 59.453 34.615 0.00 0.00 0.00 2.83
48 49 6.063404 TCCCCGTTTCTAGTTTTATGTTGTT 58.937 36.000 0.00 0.00 0.00 2.83
49 50 5.623169 TCCCCGTTTCTAGTTTTATGTTGT 58.377 37.500 0.00 0.00 0.00 3.32
50 51 6.206048 AGTTCCCCGTTTCTAGTTTTATGTTG 59.794 38.462 0.00 0.00 0.00 3.33
51 52 6.301486 AGTTCCCCGTTTCTAGTTTTATGTT 58.699 36.000 0.00 0.00 0.00 2.71
52 53 5.872963 AGTTCCCCGTTTCTAGTTTTATGT 58.127 37.500 0.00 0.00 0.00 2.29
53 54 5.935789 TGAGTTCCCCGTTTCTAGTTTTATG 59.064 40.000 0.00 0.00 0.00 1.90
54 55 6.117975 TGAGTTCCCCGTTTCTAGTTTTAT 57.882 37.500 0.00 0.00 0.00 1.40
55 56 5.549742 TGAGTTCCCCGTTTCTAGTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
56 57 4.426736 TGAGTTCCCCGTTTCTAGTTTT 57.573 40.909 0.00 0.00 0.00 2.43
57 58 4.635699 ATGAGTTCCCCGTTTCTAGTTT 57.364 40.909 0.00 0.00 0.00 2.66
58 59 4.529377 TGTATGAGTTCCCCGTTTCTAGTT 59.471 41.667 0.00 0.00 0.00 2.24
59 60 4.091549 TGTATGAGTTCCCCGTTTCTAGT 58.908 43.478 0.00 0.00 0.00 2.57
61 62 5.687166 ATTGTATGAGTTCCCCGTTTCTA 57.313 39.130 0.00 0.00 0.00 2.10
62 63 4.569719 ATTGTATGAGTTCCCCGTTTCT 57.430 40.909 0.00 0.00 0.00 2.52
63 64 6.987992 TGTATATTGTATGAGTTCCCCGTTTC 59.012 38.462 0.00 0.00 0.00 2.78
64 65 6.764560 GTGTATATTGTATGAGTTCCCCGTTT 59.235 38.462 0.00 0.00 0.00 3.60
67 68 6.097915 AGTGTATATTGTATGAGTTCCCCG 57.902 41.667 0.00 0.00 0.00 5.73
68 69 8.088981 CACTAGTGTATATTGTATGAGTTCCCC 58.911 40.741 15.06 0.00 0.00 4.81
69 70 8.088981 CCACTAGTGTATATTGTATGAGTTCCC 58.911 40.741 21.18 0.00 0.00 3.97
70 71 7.599245 GCCACTAGTGTATATTGTATGAGTTCC 59.401 40.741 21.18 0.00 0.00 3.62
71 72 7.599245 GGCCACTAGTGTATATTGTATGAGTTC 59.401 40.741 21.18 0.00 0.00 3.01
72 73 7.442656 GGCCACTAGTGTATATTGTATGAGTT 58.557 38.462 21.18 0.00 0.00 3.01
74 75 6.211584 AGGGCCACTAGTGTATATTGTATGAG 59.788 42.308 21.18 2.66 0.00 2.90
75 76 6.082031 AGGGCCACTAGTGTATATTGTATGA 58.918 40.000 21.18 0.00 0.00 2.15
76 77 6.360370 AGGGCCACTAGTGTATATTGTATG 57.640 41.667 21.18 3.35 0.00 2.39
77 78 6.013639 GGAAGGGCCACTAGTGTATATTGTAT 60.014 42.308 21.18 0.00 36.34 2.29
79 80 4.102681 GGAAGGGCCACTAGTGTATATTGT 59.897 45.833 21.18 0.68 36.34 2.71
80 81 4.102524 TGGAAGGGCCACTAGTGTATATTG 59.897 45.833 21.18 6.19 43.33 1.90
82 83 3.904339 CTGGAAGGGCCACTAGTGTATAT 59.096 47.826 21.18 3.83 43.33 0.86
83 84 3.305720 CTGGAAGGGCCACTAGTGTATA 58.694 50.000 21.18 0.00 43.33 1.47
84 85 2.119495 CTGGAAGGGCCACTAGTGTAT 58.881 52.381 21.18 2.77 43.33 2.29
85 86 1.203262 ACTGGAAGGGCCACTAGTGTA 60.203 52.381 21.18 0.00 43.33 2.90
86 87 0.473886 ACTGGAAGGGCCACTAGTGT 60.474 55.000 21.18 2.17 43.33 3.55
96 97 1.003839 TTGTAGCGCACTGGAAGGG 60.004 57.895 11.47 0.00 43.62 3.95
97 98 0.037326 TCTTGTAGCGCACTGGAAGG 60.037 55.000 11.47 0.00 39.30 3.46
98 99 1.728971 CTTCTTGTAGCGCACTGGAAG 59.271 52.381 11.47 16.93 42.29 3.46
99 100 1.343142 TCTTCTTGTAGCGCACTGGAA 59.657 47.619 11.47 12.40 0.00 3.53
100 101 0.966179 TCTTCTTGTAGCGCACTGGA 59.034 50.000 11.47 5.87 0.00 3.86
101 102 1.728971 CTTCTTCTTGTAGCGCACTGG 59.271 52.381 11.47 3.65 0.00 4.00
103 104 2.821991 ACTTCTTCTTGTAGCGCACT 57.178 45.000 11.47 0.00 0.00 4.40
109 110 2.094182 TGGGCGCTACTTCTTCTTGTAG 60.094 50.000 7.64 0.00 39.15 2.74
110 111 1.897133 TGGGCGCTACTTCTTCTTGTA 59.103 47.619 7.64 0.00 0.00 2.41
112 113 1.066858 TCTGGGCGCTACTTCTTCTTG 60.067 52.381 7.64 0.00 0.00 3.02
114 115 1.267121 TTCTGGGCGCTACTTCTTCT 58.733 50.000 7.64 0.00 0.00 2.85
115 116 2.094762 TTTCTGGGCGCTACTTCTTC 57.905 50.000 7.64 0.00 0.00 2.87
117 118 2.561478 TTTTTCTGGGCGCTACTTCT 57.439 45.000 7.64 0.00 0.00 2.85
118 119 2.747446 TGATTTTTCTGGGCGCTACTTC 59.253 45.455 7.64 0.00 0.00 3.01
119 120 2.488153 GTGATTTTTCTGGGCGCTACTT 59.512 45.455 7.64 0.00 0.00 2.24
120 121 2.084546 GTGATTTTTCTGGGCGCTACT 58.915 47.619 7.64 0.00 0.00 2.57
121 122 1.810151 TGTGATTTTTCTGGGCGCTAC 59.190 47.619 7.64 0.66 0.00 3.58
122 123 2.192664 TGTGATTTTTCTGGGCGCTA 57.807 45.000 7.64 0.00 0.00 4.26
123 124 1.270550 CTTGTGATTTTTCTGGGCGCT 59.729 47.619 7.64 0.00 0.00 5.92
124 125 1.669795 CCTTGTGATTTTTCTGGGCGC 60.670 52.381 0.00 0.00 0.00 6.53
125 126 1.669795 GCCTTGTGATTTTTCTGGGCG 60.670 52.381 0.00 0.00 0.00 6.13
126 127 1.344114 TGCCTTGTGATTTTTCTGGGC 59.656 47.619 0.00 0.00 38.87 5.36
127 128 3.749665 TTGCCTTGTGATTTTTCTGGG 57.250 42.857 0.00 0.00 0.00 4.45
128 129 7.727331 TTTTATTGCCTTGTGATTTTTCTGG 57.273 32.000 0.00 0.00 0.00 3.86
136 137 9.048446 GCAAATGATATTTTATTGCCTTGTGAT 57.952 29.630 0.00 0.00 40.25 3.06
137 138 8.422973 GCAAATGATATTTTATTGCCTTGTGA 57.577 30.769 0.00 0.00 40.25 3.58
144 145 7.065283 GCTTTCGGCAAATGATATTTTATTGC 58.935 34.615 0.00 0.00 44.18 3.56
161 162 0.246635 TAGAGACAGGTGCTTTCGGC 59.753 55.000 0.00 0.00 42.22 5.54
162 163 2.338500 GTTAGAGACAGGTGCTTTCGG 58.662 52.381 0.00 0.00 0.00 4.30
164 165 2.701107 GGGTTAGAGACAGGTGCTTTC 58.299 52.381 0.00 0.00 0.00 2.62
165 166 1.002087 CGGGTTAGAGACAGGTGCTTT 59.998 52.381 0.00 0.00 0.00 3.51
168 169 1.218316 CCGGGTTAGAGACAGGTGC 59.782 63.158 0.00 0.00 0.00 5.01
169 170 1.898154 CCCGGGTTAGAGACAGGTG 59.102 63.158 14.18 0.00 0.00 4.00
173 174 0.263765 ATAGGCCCGGGTTAGAGACA 59.736 55.000 24.63 0.00 0.00 3.41
174 175 2.299326 TATAGGCCCGGGTTAGAGAC 57.701 55.000 24.63 2.30 0.00 3.36
175 176 2.653366 AGATATAGGCCCGGGTTAGAGA 59.347 50.000 24.63 3.76 0.00 3.10
178 179 4.635699 AAAAGATATAGGCCCGGGTTAG 57.364 45.455 24.63 0.00 0.00 2.34
180 181 3.965470 AAAAAGATATAGGCCCGGGTT 57.035 42.857 24.63 13.83 0.00 4.11
198 199 4.775253 AGGGAAGAAGGTGTTGAACAAAAA 59.225 37.500 0.00 0.00 0.00 1.94
200 201 3.699038 CAGGGAAGAAGGTGTTGAACAAA 59.301 43.478 0.00 0.00 0.00 2.83
202 203 2.241176 ACAGGGAAGAAGGTGTTGAACA 59.759 45.455 0.00 0.00 0.00 3.18
203 204 2.618709 CACAGGGAAGAAGGTGTTGAAC 59.381 50.000 0.00 0.00 0.00 3.18
204 205 2.241176 ACACAGGGAAGAAGGTGTTGAA 59.759 45.455 0.00 0.00 41.36 2.69
205 206 1.843851 ACACAGGGAAGAAGGTGTTGA 59.156 47.619 0.00 0.00 41.36 3.18
206 207 2.348411 ACACAGGGAAGAAGGTGTTG 57.652 50.000 0.00 0.00 41.36 3.33
207 208 3.201266 TGTTACACAGGGAAGAAGGTGTT 59.799 43.478 0.00 0.00 41.36 3.32
208 209 2.775384 TGTTACACAGGGAAGAAGGTGT 59.225 45.455 0.00 0.00 45.57 4.16
209 210 3.485463 TGTTACACAGGGAAGAAGGTG 57.515 47.619 0.00 0.00 37.29 4.00
210 211 4.513406 TTTGTTACACAGGGAAGAAGGT 57.487 40.909 0.00 0.00 0.00 3.50
212 213 6.202516 TGTTTTTGTTACACAGGGAAGAAG 57.797 37.500 0.00 0.00 0.00 2.85
213 214 6.591750 TTGTTTTTGTTACACAGGGAAGAA 57.408 33.333 0.00 0.00 0.00 2.52
214 215 5.393678 GCTTGTTTTTGTTACACAGGGAAGA 60.394 40.000 0.00 0.00 0.00 2.87
216 217 4.675671 CGCTTGTTTTTGTTACACAGGGAA 60.676 41.667 0.00 0.00 0.00 3.97
218 219 3.112580 CGCTTGTTTTTGTTACACAGGG 58.887 45.455 0.00 0.00 0.00 4.45
219 220 4.022464 TCGCTTGTTTTTGTTACACAGG 57.978 40.909 0.00 0.00 0.00 4.00
220 221 4.904116 TCTCGCTTGTTTTTGTTACACAG 58.096 39.130 0.00 0.00 0.00 3.66
221 222 4.632251 TCTCTCGCTTGTTTTTGTTACACA 59.368 37.500 0.00 0.00 0.00 3.72
222 223 5.151632 TCTCTCGCTTGTTTTTGTTACAC 57.848 39.130 0.00 0.00 0.00 2.90
223 224 5.122554 TGTTCTCTCGCTTGTTTTTGTTACA 59.877 36.000 0.00 0.00 0.00 2.41
224 225 5.565695 TGTTCTCTCGCTTGTTTTTGTTAC 58.434 37.500 0.00 0.00 0.00 2.50
226 227 4.695217 TGTTCTCTCGCTTGTTTTTGTT 57.305 36.364 0.00 0.00 0.00 2.83
227 228 4.261197 GGATGTTCTCTCGCTTGTTTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
228 229 4.222114 GGATGTTCTCTCGCTTGTTTTTG 58.778 43.478 0.00 0.00 0.00 2.44
229 230 3.253432 GGGATGTTCTCTCGCTTGTTTTT 59.747 43.478 0.00 0.00 0.00 1.94
231 232 2.224523 TGGGATGTTCTCTCGCTTGTTT 60.225 45.455 0.00 0.00 0.00 2.83
233 234 0.976641 TGGGATGTTCTCTCGCTTGT 59.023 50.000 0.00 0.00 0.00 3.16
234 235 1.649664 CTGGGATGTTCTCTCGCTTG 58.350 55.000 0.00 0.00 0.00 4.01
236 237 1.519719 GCTGGGATGTTCTCTCGCT 59.480 57.895 0.00 0.00 0.00 4.93
239 240 2.496899 TTTGGCTGGGATGTTCTCTC 57.503 50.000 0.00 0.00 0.00 3.20
240 241 2.376518 TCTTTTGGCTGGGATGTTCTCT 59.623 45.455 0.00 0.00 0.00 3.10
241 242 2.489722 GTCTTTTGGCTGGGATGTTCTC 59.510 50.000 0.00 0.00 0.00 2.87
245 246 1.425066 TCTGTCTTTTGGCTGGGATGT 59.575 47.619 0.00 0.00 0.00 3.06
248 249 2.306847 GTTTCTGTCTTTTGGCTGGGA 58.693 47.619 0.00 0.00 0.00 4.37
249 250 2.031120 TGTTTCTGTCTTTTGGCTGGG 58.969 47.619 0.00 0.00 0.00 4.45
250 251 3.799281 TTGTTTCTGTCTTTTGGCTGG 57.201 42.857 0.00 0.00 0.00 4.85
251 252 4.997565 TCTTTGTTTCTGTCTTTTGGCTG 58.002 39.130 0.00 0.00 0.00 4.85
252 253 5.659440 TTCTTTGTTTCTGTCTTTTGGCT 57.341 34.783 0.00 0.00 0.00 4.75
253 254 6.099341 TCTTTCTTTGTTTCTGTCTTTTGGC 58.901 36.000 0.00 0.00 0.00 4.52
254 255 7.201470 GCTTCTTTCTTTGTTTCTGTCTTTTGG 60.201 37.037 0.00 0.00 0.00 3.28
257 258 6.333416 GGCTTCTTTCTTTGTTTCTGTCTTT 58.667 36.000 0.00 0.00 0.00 2.52
258 259 5.163509 GGGCTTCTTTCTTTGTTTCTGTCTT 60.164 40.000 0.00 0.00 0.00 3.01
259 260 4.339530 GGGCTTCTTTCTTTGTTTCTGTCT 59.660 41.667 0.00 0.00 0.00 3.41
260 261 4.097892 TGGGCTTCTTTCTTTGTTTCTGTC 59.902 41.667 0.00 0.00 0.00 3.51
261 262 4.023291 TGGGCTTCTTTCTTTGTTTCTGT 58.977 39.130 0.00 0.00 0.00 3.41
265 266 3.033909 AGCTGGGCTTCTTTCTTTGTTT 58.966 40.909 0.00 0.00 33.89 2.83
266 267 2.363359 CAGCTGGGCTTCTTTCTTTGTT 59.637 45.455 5.57 0.00 36.40 2.83
269 270 2.664402 TCAGCTGGGCTTCTTTCTTT 57.336 45.000 15.13 0.00 36.40 2.52
270 271 2.664402 TTCAGCTGGGCTTCTTTCTT 57.336 45.000 15.13 0.00 36.40 2.52
271 272 2.664402 TTTCAGCTGGGCTTCTTTCT 57.336 45.000 15.13 0.00 36.40 2.52
272 273 3.949842 AATTTCAGCTGGGCTTCTTTC 57.050 42.857 15.13 0.00 36.40 2.62
273 274 4.588528 TGTTAATTTCAGCTGGGCTTCTTT 59.411 37.500 15.13 1.50 36.40 2.52
275 276 3.766545 TGTTAATTTCAGCTGGGCTTCT 58.233 40.909 15.13 0.00 36.40 2.85
276 277 4.519540 TTGTTAATTTCAGCTGGGCTTC 57.480 40.909 15.13 0.00 36.40 3.86
277 278 4.100808 TGTTTGTTAATTTCAGCTGGGCTT 59.899 37.500 15.13 7.29 36.40 4.35
279 280 3.988819 TGTTTGTTAATTTCAGCTGGGC 58.011 40.909 15.13 0.00 0.00 5.36
280 281 8.600449 TTATTTGTTTGTTAATTTCAGCTGGG 57.400 30.769 15.13 0.00 0.00 4.45
281 282 9.862585 GTTTATTTGTTTGTTAATTTCAGCTGG 57.137 29.630 15.13 0.00 0.00 4.85
296 297 7.548780 TGAGCTTTTCTGCTTGTTTATTTGTTT 59.451 29.630 0.00 0.00 44.17 2.83
298 299 6.572519 TGAGCTTTTCTGCTTGTTTATTTGT 58.427 32.000 0.00 0.00 44.17 2.83
300 301 7.042797 TCTGAGCTTTTCTGCTTGTTTATTT 57.957 32.000 0.00 0.00 44.17 1.40
301 302 6.639632 TCTGAGCTTTTCTGCTTGTTTATT 57.360 33.333 0.00 0.00 44.17 1.40
302 303 6.264067 ACTTCTGAGCTTTTCTGCTTGTTTAT 59.736 34.615 0.00 0.00 44.17 1.40
303 304 5.590259 ACTTCTGAGCTTTTCTGCTTGTTTA 59.410 36.000 0.00 0.00 44.17 2.01
306 307 3.549794 ACTTCTGAGCTTTTCTGCTTGT 58.450 40.909 0.00 0.00 44.17 3.16
307 308 3.562973 TGACTTCTGAGCTTTTCTGCTTG 59.437 43.478 0.00 0.00 44.17 4.01
308 309 3.813443 TGACTTCTGAGCTTTTCTGCTT 58.187 40.909 0.00 0.00 44.17 3.91
310 311 3.670091 GCATGACTTCTGAGCTTTTCTGC 60.670 47.826 0.00 0.00 0.00 4.26
312 313 2.740981 CGCATGACTTCTGAGCTTTTCT 59.259 45.455 0.00 0.00 0.00 2.52
313 314 2.159599 CCGCATGACTTCTGAGCTTTTC 60.160 50.000 0.00 0.00 0.00 2.29
314 315 1.808945 CCGCATGACTTCTGAGCTTTT 59.191 47.619 0.00 0.00 0.00 2.27
315 316 1.002430 TCCGCATGACTTCTGAGCTTT 59.998 47.619 0.00 0.00 0.00 3.51
316 317 0.610174 TCCGCATGACTTCTGAGCTT 59.390 50.000 0.00 0.00 0.00 3.74
317 318 0.829333 ATCCGCATGACTTCTGAGCT 59.171 50.000 0.00 0.00 0.00 4.09
321 322 1.863454 GCTGTATCCGCATGACTTCTG 59.137 52.381 0.00 0.00 0.00 3.02
322 323 1.202580 GGCTGTATCCGCATGACTTCT 60.203 52.381 0.00 0.00 0.00 2.85
323 324 1.221414 GGCTGTATCCGCATGACTTC 58.779 55.000 0.00 0.00 0.00 3.01
324 325 0.179045 GGGCTGTATCCGCATGACTT 60.179 55.000 0.00 0.00 0.00 3.01
325 326 1.337384 TGGGCTGTATCCGCATGACT 61.337 55.000 0.00 0.00 0.00 3.41
326 327 0.463654 TTGGGCTGTATCCGCATGAC 60.464 55.000 0.00 0.00 0.00 3.06
327 328 0.463654 GTTGGGCTGTATCCGCATGA 60.464 55.000 0.00 0.00 0.00 3.07
328 329 0.747644 TGTTGGGCTGTATCCGCATG 60.748 55.000 0.00 0.00 0.00 4.06
329 330 0.464373 CTGTTGGGCTGTATCCGCAT 60.464 55.000 0.00 0.00 0.00 4.73
330 331 1.078497 CTGTTGGGCTGTATCCGCA 60.078 57.895 0.00 0.00 0.00 5.69
331 332 1.819632 CCTGTTGGGCTGTATCCGC 60.820 63.158 0.00 0.00 0.00 5.54
332 333 4.540153 CCTGTTGGGCTGTATCCG 57.460 61.111 0.00 0.00 0.00 4.18
351 352 1.448985 TGTTTGATTCCTAGCGTGGC 58.551 50.000 0.00 0.00 0.00 5.01
352 353 2.223340 GCATGTTTGATTCCTAGCGTGG 60.223 50.000 0.00 0.00 0.00 4.94
353 354 2.537529 CGCATGTTTGATTCCTAGCGTG 60.538 50.000 0.00 0.00 39.18 5.34
354 355 1.665679 CGCATGTTTGATTCCTAGCGT 59.334 47.619 0.00 0.00 39.18 5.07
355 356 1.003545 CCGCATGTTTGATTCCTAGCG 60.004 52.381 0.00 0.00 43.13 4.26
357 358 4.150627 CGTATCCGCATGTTTGATTCCTAG 59.849 45.833 0.00 0.00 0.00 3.02
358 359 4.055360 CGTATCCGCATGTTTGATTCCTA 58.945 43.478 0.00 0.00 0.00 2.94
359 360 2.872245 CGTATCCGCATGTTTGATTCCT 59.128 45.455 0.00 0.00 0.00 3.36
361 362 2.602217 GCCGTATCCGCATGTTTGATTC 60.602 50.000 0.00 0.00 0.00 2.52
362 363 1.333619 GCCGTATCCGCATGTTTGATT 59.666 47.619 0.00 0.00 0.00 2.57
367 368 2.203153 GGGCCGTATCCGCATGTT 60.203 61.111 0.00 0.00 0.00 2.71
368 369 2.731691 GATGGGCCGTATCCGCATGT 62.732 60.000 0.00 0.00 36.20 3.21
369 370 2.032528 ATGGGCCGTATCCGCATG 59.967 61.111 0.00 0.00 34.98 4.06
370 371 2.347490 GATGGGCCGTATCCGCAT 59.653 61.111 0.00 0.00 38.39 4.73
371 372 3.157949 TGATGGGCCGTATCCGCA 61.158 61.111 14.07 0.00 0.00 5.69
372 373 2.357517 CTGATGGGCCGTATCCGC 60.358 66.667 14.07 0.00 0.00 5.54
373 374 2.343758 CCTGATGGGCCGTATCCG 59.656 66.667 14.07 8.93 0.00 4.18
391 392 1.010419 GCTTGTTTCCTGGCATTGCG 61.010 55.000 1.91 0.00 0.00 4.85
392 393 0.671472 GGCTTGTTTCCTGGCATTGC 60.671 55.000 0.00 0.00 0.00 3.56
393 394 0.971386 AGGCTTGTTTCCTGGCATTG 59.029 50.000 0.00 0.00 31.53 2.82
394 395 2.603075 TAGGCTTGTTTCCTGGCATT 57.397 45.000 0.00 0.00 35.21 3.56
395 396 2.603075 TTAGGCTTGTTTCCTGGCAT 57.397 45.000 0.00 0.00 35.21 4.40
396 397 2.562298 CAATTAGGCTTGTTTCCTGGCA 59.438 45.455 0.00 0.00 35.21 4.92
397 398 2.675032 GCAATTAGGCTTGTTTCCTGGC 60.675 50.000 0.00 0.00 35.21 4.85
398 399 2.827921 AGCAATTAGGCTTGTTTCCTGG 59.172 45.455 0.00 0.00 42.71 4.45
399 400 3.760684 AGAGCAATTAGGCTTGTTTCCTG 59.239 43.478 0.00 0.00 45.99 3.86
400 401 4.039603 AGAGCAATTAGGCTTGTTTCCT 57.960 40.909 0.00 0.00 45.99 3.36
401 402 4.336713 CCTAGAGCAATTAGGCTTGTTTCC 59.663 45.833 0.00 0.00 45.99 3.13
402 403 4.944317 ACCTAGAGCAATTAGGCTTGTTTC 59.056 41.667 0.00 0.00 45.99 2.78
404 405 4.019321 TCACCTAGAGCAATTAGGCTTGTT 60.019 41.667 0.00 0.00 45.99 2.83
405 406 3.519510 TCACCTAGAGCAATTAGGCTTGT 59.480 43.478 0.00 0.00 45.99 3.16
407 408 3.519510 TGTCACCTAGAGCAATTAGGCTT 59.480 43.478 0.00 0.00 45.99 4.35
409 410 3.543680 TGTCACCTAGAGCAATTAGGC 57.456 47.619 7.79 0.00 41.16 3.93
412 413 4.443457 GGCTGATGTCACCTAGAGCAATTA 60.443 45.833 0.00 0.00 0.00 1.40
413 414 3.539604 GCTGATGTCACCTAGAGCAATT 58.460 45.455 0.00 0.00 0.00 2.32
415 416 1.208052 GGCTGATGTCACCTAGAGCAA 59.792 52.381 0.00 0.00 0.00 3.91
416 417 0.826715 GGCTGATGTCACCTAGAGCA 59.173 55.000 0.00 0.00 0.00 4.26
417 418 0.249238 CGGCTGATGTCACCTAGAGC 60.249 60.000 0.00 0.00 0.00 4.09
418 419 1.066303 GTCGGCTGATGTCACCTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
419 420 1.103803 GTCGGCTGATGTCACCTAGA 58.896 55.000 0.00 0.00 0.00 2.43
420 421 1.107114 AGTCGGCTGATGTCACCTAG 58.893 55.000 0.00 0.00 0.00 3.02
421 422 1.557099 AAGTCGGCTGATGTCACCTA 58.443 50.000 0.00 0.00 0.00 3.08
422 423 1.478510 CTAAGTCGGCTGATGTCACCT 59.521 52.381 0.00 0.00 0.00 4.00
424 425 2.164624 AGTCTAAGTCGGCTGATGTCAC 59.835 50.000 0.00 0.00 0.00 3.67
425 426 2.447443 AGTCTAAGTCGGCTGATGTCA 58.553 47.619 0.00 0.00 0.00 3.58
426 427 3.440228 GAAGTCTAAGTCGGCTGATGTC 58.560 50.000 0.00 0.00 0.00 3.06
427 428 2.159366 CGAAGTCTAAGTCGGCTGATGT 60.159 50.000 0.00 0.00 33.62 3.06
428 429 2.455032 CGAAGTCTAAGTCGGCTGATG 58.545 52.381 0.00 0.00 33.62 3.07
430 431 0.170561 GCGAAGTCTAAGTCGGCTGA 59.829 55.000 0.00 0.00 37.73 4.26
431 432 1.134530 CGCGAAGTCTAAGTCGGCTG 61.135 60.000 0.00 0.00 37.73 4.85
432 433 1.136984 CGCGAAGTCTAAGTCGGCT 59.863 57.895 0.00 0.00 37.73 5.52
433 434 0.455633 TTCGCGAAGTCTAAGTCGGC 60.456 55.000 19.38 0.00 37.73 5.54
434 435 1.536149 CTTCGCGAAGTCTAAGTCGG 58.464 55.000 34.97 11.44 37.73 4.79
444 445 2.167591 GTCGACTTAGACTTCGCGAAG 58.832 52.381 39.55 39.55 43.79 3.79
445 446 2.238245 GTCGACTTAGACTTCGCGAA 57.762 50.000 22.01 22.01 38.09 4.70
454 455 4.222366 TGTCTAGGTCTGAGTCGACTTAGA 59.778 45.833 30.05 30.05 44.96 2.10
455 456 4.505808 TGTCTAGGTCTGAGTCGACTTAG 58.494 47.826 26.80 26.80 41.99 2.18
456 457 4.548451 TGTCTAGGTCTGAGTCGACTTA 57.452 45.455 21.08 15.22 34.38 2.24
457 458 3.420300 TGTCTAGGTCTGAGTCGACTT 57.580 47.619 21.08 4.85 34.38 3.01
458 459 3.420300 TTGTCTAGGTCTGAGTCGACT 57.580 47.619 20.18 20.18 34.38 4.18
460 461 2.818432 GGTTTGTCTAGGTCTGAGTCGA 59.182 50.000 0.00 0.00 0.00 4.20
463 464 2.972348 TGGGTTTGTCTAGGTCTGAGT 58.028 47.619 0.00 0.00 0.00 3.41
465 466 4.781775 TTTTGGGTTTGTCTAGGTCTGA 57.218 40.909 0.00 0.00 0.00 3.27
467 468 8.541899 TTTAATTTTTGGGTTTGTCTAGGTCT 57.458 30.769 0.00 0.00 0.00 3.85
469 470 8.541899 TCTTTAATTTTTGGGTTTGTCTAGGT 57.458 30.769 0.00 0.00 0.00 3.08
473 474 9.378551 GTTCTTCTTTAATTTTTGGGTTTGTCT 57.621 29.630 0.00 0.00 0.00 3.41
474 475 9.157104 TGTTCTTCTTTAATTTTTGGGTTTGTC 57.843 29.630 0.00 0.00 0.00 3.18
475 476 9.161629 CTGTTCTTCTTTAATTTTTGGGTTTGT 57.838 29.630 0.00 0.00 0.00 2.83
476 477 8.122330 GCTGTTCTTCTTTAATTTTTGGGTTTG 58.878 33.333 0.00 0.00 0.00 2.93
477 478 7.011016 CGCTGTTCTTCTTTAATTTTTGGGTTT 59.989 33.333 0.00 0.00 0.00 3.27
478 479 6.478673 CGCTGTTCTTCTTTAATTTTTGGGTT 59.521 34.615 0.00 0.00 0.00 4.11
479 480 5.983118 CGCTGTTCTTCTTTAATTTTTGGGT 59.017 36.000 0.00 0.00 0.00 4.51
480 481 5.983118 ACGCTGTTCTTCTTTAATTTTTGGG 59.017 36.000 0.00 0.00 0.00 4.12
481 482 8.568732 TTACGCTGTTCTTCTTTAATTTTTGG 57.431 30.769 0.00 0.00 0.00 3.28
492 493 1.798813 CCGCTTTTACGCTGTTCTTCT 59.201 47.619 0.00 0.00 0.00 2.85
497 498 1.512156 CCCACCGCTTTTACGCTGTT 61.512 55.000 0.00 0.00 0.00 3.16
509 510 1.164041 AATATACGCAAGCCCACCGC 61.164 55.000 0.00 0.00 45.62 5.68
547 548 5.874810 TCTGCTTGCAAATAACTAGTCGATT 59.125 36.000 0.00 0.00 0.00 3.34
605 606 6.798427 TTGACTTCTGGTAGAATCTGCTAT 57.202 37.500 0.00 0.00 33.13 2.97
668 670 0.321653 ACCATCGTTTCTGGCTGACC 60.322 55.000 0.00 0.00 37.27 4.02
956 4181 6.334102 AGGTACTAGTGACAGAGAGTTTTG 57.666 41.667 5.39 0.00 36.02 2.44
1045 4285 2.520741 GGCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1046 4286 4.507916 CGGCGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
1329 4604 1.880796 CACGACAATCGCGGGCATA 60.881 57.895 6.13 0.00 45.12 3.14
1391 4666 2.791256 CAAACGGCATAGGCACGG 59.209 61.111 13.29 0.00 43.71 4.94
1472 4749 1.150536 GGAAGGCGCCCCATCAATA 59.849 57.895 26.15 0.00 30.40 1.90
1666 5026 0.823356 ACTTGGTTGCCAGCGACAAT 60.823 50.000 11.97 0.00 33.81 2.71
1744 5104 1.915078 ATAGCCTGGCTGCTTTCGGT 61.915 55.000 30.83 3.84 42.75 4.69
1780 5140 4.966965 TTTCACCTTTTGTAAGCGTTCA 57.033 36.364 0.00 0.00 0.00 3.18
1786 5146 5.005299 CGCCTTTGTTTTCACCTTTTGTAAG 59.995 40.000 0.00 0.00 0.00 2.34
1795 5155 0.658897 TCGACGCCTTTGTTTTCACC 59.341 50.000 0.00 0.00 0.00 4.02
1802 5162 4.355925 GTCCTTCGACGCCTTTGT 57.644 55.556 0.00 0.00 0.00 2.83
1823 5219 3.126831 GCGAGTATGACAAATCCTCCAG 58.873 50.000 0.00 0.00 0.00 3.86
1831 5227 0.892755 AGACGGGCGAGTATGACAAA 59.107 50.000 0.00 0.00 0.00 2.83
1869 5265 7.010552 CGGGTTATTTTGAGTCAGATTCACTAG 59.989 40.741 0.00 0.00 0.00 2.57
1870 5266 6.816640 CGGGTTATTTTGAGTCAGATTCACTA 59.183 38.462 0.00 0.00 0.00 2.74
2091 5488 1.305718 GAGCAGACCAGAGGAGGGT 60.306 63.158 0.00 0.00 42.61 4.34
2135 5535 2.669569 GAAGCAAGGCTGGCGTGA 60.670 61.111 20.32 0.00 39.62 4.35
2351 5753 5.886960 ACTGATTGAGAACATTAGGTTGC 57.113 39.130 0.00 0.00 40.63 4.17
2358 5760 6.059787 AGAGCCTTACTGATTGAGAACATT 57.940 37.500 0.00 0.00 0.00 2.71
2363 5765 3.703556 CTGGAGAGCCTTACTGATTGAGA 59.296 47.826 0.00 0.00 34.31 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.