Multiple sequence alignment - TraesCS5B01G421100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G421100 chr5B 100.000 2769 0 0 1 2769 596903204 596905972 0.000000e+00 5114.0
1 TraesCS5B01G421100 chr5B 93.573 389 14 1 2381 2769 689885541 689885918 1.110000e-158 569.0
2 TraesCS5B01G421100 chr5B 92.112 393 17 2 2379 2769 119410174 119410554 2.430000e-150 542.0
3 TraesCS5B01G421100 chr5B 90.270 185 9 4 652 835 596880476 596880652 1.660000e-57 233.0
4 TraesCS5B01G421100 chr5B 83.886 211 31 2 1097 1304 596439068 596438858 6.050000e-47 198.0
5 TraesCS5B01G421100 chr5B 87.324 71 7 2 763 832 596898662 596898731 2.290000e-11 80.5
6 TraesCS5B01G421100 chr5D 84.682 1495 125 33 41 1485 485266227 485267667 0.000000e+00 1397.0
7 TraesCS5B01G421100 chr5D 89.878 1067 59 18 766 1805 485294156 485295200 0.000000e+00 1327.0
8 TraesCS5B01G421100 chr5D 88.490 808 56 15 951 1730 485268063 485268861 0.000000e+00 942.0
9 TraesCS5B01G421100 chr5D 82.822 652 73 18 2 618 115976792 115977439 5.210000e-152 547.0
10 TraesCS5B01G421100 chr5D 93.927 247 15 0 1983 2229 485299531 485299777 9.360000e-100 374.0
11 TraesCS5B01G421100 chr5D 89.960 249 23 2 1983 2230 485269120 485269367 1.240000e-83 320.0
12 TraesCS5B01G421100 chr5D 86.486 185 8 6 1818 1988 485268898 485269079 1.310000e-43 187.0
13 TraesCS5B01G421100 chr5D 91.406 128 6 3 1818 1943 485295181 485295305 1.320000e-38 171.0
14 TraesCS5B01G421100 chr5D 88.764 89 10 0 2296 2384 485269516 485269604 2.920000e-20 110.0
15 TraesCS5B01G421100 chr5D 97.917 48 0 1 1941 1988 485299444 485299490 6.360000e-12 82.4
16 TraesCS5B01G421100 chr5A 88.075 1174 93 26 653 1804 606525868 606527016 0.000000e+00 1349.0
17 TraesCS5B01G421100 chr5A 89.499 819 64 6 957 1766 606460719 606461524 0.000000e+00 1016.0
18 TraesCS5B01G421100 chr5A 85.132 491 24 14 1821 2290 606461523 606461985 9.040000e-125 457.0
19 TraesCS5B01G421100 chr5A 91.200 250 19 3 1983 2230 606527220 606527468 1.230000e-88 337.0
20 TraesCS5B01G421100 chr5A 89.888 178 13 2 777 954 606488012 606488184 9.980000e-55 224.0
21 TraesCS5B01G421100 chr5A 87.027 185 7 8 1818 1988 606526998 606527179 2.810000e-45 193.0
22 TraesCS5B01G421100 chr5A 87.898 157 11 1 653 809 606460558 606460706 7.880000e-41 178.0
23 TraesCS5B01G421100 chr5A 85.612 139 11 4 1555 1693 606307630 606307759 1.340000e-28 137.0
24 TraesCS5B01G421100 chr5A 91.011 89 8 0 2296 2384 606462060 606462148 1.350000e-23 121.0
25 TraesCS5B01G421100 chr1B 94.416 394 21 1 2376 2769 308014295 308013903 3.050000e-169 604.0
26 TraesCS5B01G421100 chr1B 79.745 706 87 33 2 658 190879045 190879743 6.990000e-126 460.0
27 TraesCS5B01G421100 chr1B 93.137 306 19 2 2383 2688 605661532 605661229 5.440000e-122 448.0
28 TraesCS5B01G421100 chr1B 84.746 59 6 3 2317 2373 251057437 251057494 3.850000e-04 56.5
29 TraesCS5B01G421100 chr3B 94.087 389 22 1 2381 2769 690060777 690060390 8.540000e-165 590.0
30 TraesCS5B01G421100 chr3B 94.902 255 12 1 2515 2769 825585693 825585946 5.560000e-107 398.0
31 TraesCS5B01G421100 chr6B 93.023 387 23 3 2383 2769 154274040 154273658 1.860000e-156 562.0
32 TraesCS5B01G421100 chr2D 83.123 634 77 18 2 608 340273478 340274108 4.030000e-153 551.0
33 TraesCS5B01G421100 chr2D 80.473 676 85 29 14 649 155761016 155760348 8.980000e-130 473.0
34 TraesCS5B01G421100 chr2D 76.444 675 113 29 2 651 547948920 547949573 9.570000e-85 324.0
35 TraesCS5B01G421100 chr4B 91.858 393 29 3 2379 2769 367728704 367729095 1.880000e-151 545.0
36 TraesCS5B01G421100 chr4B 91.971 274 18 4 2498 2769 367331893 367331622 5.600000e-102 381.0
37 TraesCS5B01G421100 chr4B 94.118 34 2 0 2296 2329 648566800 648566833 5.000000e-03 52.8
38 TraesCS5B01G421100 chr3D 81.085 682 83 28 2 649 83500792 83501461 1.140000e-138 503.0
39 TraesCS5B01G421100 chr3D 76.567 670 101 34 14 649 566614329 566613682 1.600000e-82 316.0
40 TraesCS5B01G421100 chr3D 81.538 325 52 7 329 649 546783262 546783582 7.610000e-66 261.0
41 TraesCS5B01G421100 chr3D 73.997 673 124 33 2 649 95139975 95140621 2.770000e-55 226.0
42 TraesCS5B01G421100 chr3D 100.000 28 0 0 2302 2329 103824176 103824149 5.000000e-03 52.8
43 TraesCS5B01G421100 chr3D 94.118 34 2 0 2296 2329 472951870 472951903 5.000000e-03 52.8
44 TraesCS5B01G421100 chr1D 80.409 684 84 28 6 649 483980661 483981334 2.500000e-130 475.0
45 TraesCS5B01G421100 chr1D 79.439 642 93 24 5 609 126608925 126609564 4.270000e-113 418.0
46 TraesCS5B01G421100 chr1D 81.761 318 53 5 340 655 5527275 5526961 7.610000e-66 261.0
47 TraesCS5B01G421100 chr7B 80.861 627 74 27 14 618 488366649 488366047 4.210000e-123 451.0
48 TraesCS5B01G421100 chr7D 80.374 642 81 31 6 618 230429038 230429663 1.960000e-121 446.0
49 TraesCS5B01G421100 chr7D 77.628 666 103 36 14 649 131414210 131414859 2.030000e-96 363.0
50 TraesCS5B01G421100 chr7D 100.000 28 0 0 2302 2329 388908684 388908657 5.000000e-03 52.8
51 TraesCS5B01G421100 chrUn 91.987 312 24 1 2380 2691 354044099 354044409 1.180000e-118 436.0
52 TraesCS5B01G421100 chrUn 91.667 312 25 1 2380 2691 329637544 329637854 5.480000e-117 431.0
53 TraesCS5B01G421100 chr6D 78.235 680 104 28 2 649 449308990 449309657 2.000000e-106 396.0
54 TraesCS5B01G421100 chr6D 100.000 28 0 0 2302 2329 548828 548801 5.000000e-03 52.8
55 TraesCS5B01G421100 chr4A 81.818 330 47 11 329 649 580293916 580294241 5.880000e-67 265.0
56 TraesCS5B01G421100 chr7A 81.849 292 37 12 5 287 705164103 705163819 5.960000e-57 231.0
57 TraesCS5B01G421100 chr2A 90.909 55 5 0 2330 2384 692628887 692628941 1.060000e-09 75.0
58 TraesCS5B01G421100 chr6A 97.059 34 1 0 2296 2329 582923793 582923760 1.070000e-04 58.4
59 TraesCS5B01G421100 chr3A 100.000 28 0 0 2302 2329 645108476 645108449 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G421100 chr5B 596903204 596905972 2768 False 5114.000000 5114 100.000000 1 2769 1 chr5B.!!$F4 2768
1 TraesCS5B01G421100 chr5D 485294156 485295305 1149 False 749.000000 1327 90.642000 766 1943 2 chr5D.!!$F3 1177
2 TraesCS5B01G421100 chr5D 485266227 485269604 3377 False 591.200000 1397 87.676400 41 2384 5 chr5D.!!$F2 2343
3 TraesCS5B01G421100 chr5D 115976792 115977439 647 False 547.000000 547 82.822000 2 618 1 chr5D.!!$F1 616
4 TraesCS5B01G421100 chr5A 606525868 606527468 1600 False 626.333333 1349 88.767333 653 2230 3 chr5A.!!$F4 1577
5 TraesCS5B01G421100 chr5A 606460558 606462148 1590 False 443.000000 1016 88.385000 653 2384 4 chr5A.!!$F3 1731
6 TraesCS5B01G421100 chr1B 190879045 190879743 698 False 460.000000 460 79.745000 2 658 1 chr1B.!!$F1 656
7 TraesCS5B01G421100 chr2D 340273478 340274108 630 False 551.000000 551 83.123000 2 608 1 chr2D.!!$F1 606
8 TraesCS5B01G421100 chr2D 155760348 155761016 668 True 473.000000 473 80.473000 14 649 1 chr2D.!!$R1 635
9 TraesCS5B01G421100 chr2D 547948920 547949573 653 False 324.000000 324 76.444000 2 651 1 chr2D.!!$F2 649
10 TraesCS5B01G421100 chr3D 83500792 83501461 669 False 503.000000 503 81.085000 2 649 1 chr3D.!!$F1 647
11 TraesCS5B01G421100 chr3D 566613682 566614329 647 True 316.000000 316 76.567000 14 649 1 chr3D.!!$R2 635
12 TraesCS5B01G421100 chr3D 95139975 95140621 646 False 226.000000 226 73.997000 2 649 1 chr3D.!!$F2 647
13 TraesCS5B01G421100 chr1D 483980661 483981334 673 False 475.000000 475 80.409000 6 649 1 chr1D.!!$F2 643
14 TraesCS5B01G421100 chr1D 126608925 126609564 639 False 418.000000 418 79.439000 5 609 1 chr1D.!!$F1 604
15 TraesCS5B01G421100 chr7B 488366047 488366649 602 True 451.000000 451 80.861000 14 618 1 chr7B.!!$R1 604
16 TraesCS5B01G421100 chr7D 230429038 230429663 625 False 446.000000 446 80.374000 6 618 1 chr7D.!!$F2 612
17 TraesCS5B01G421100 chr7D 131414210 131414859 649 False 363.000000 363 77.628000 14 649 1 chr7D.!!$F1 635
18 TraesCS5B01G421100 chr6D 449308990 449309657 667 False 396.000000 396 78.235000 2 649 1 chr6D.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 578 0.460459 TCGCGTCAACAACTGTTCCA 60.46 50.0 5.77 0.0 35.83 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 3707 0.040514 CTGCAAACGTGAAATGCGGA 60.041 50.0 15.62 0.0 46.86 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.210013 TGCTCAGCCTCCACGAACT 61.210 57.895 0.00 0.00 0.00 3.01
424 516 2.630592 GAACCGAGGCGATGAGGACC 62.631 65.000 0.00 0.00 0.00 4.46
485 578 0.460459 TCGCGTCAACAACTGTTCCA 60.460 50.000 5.77 0.00 35.83 3.53
492 602 2.590575 CAACTGTTCCACCGGCGT 60.591 61.111 6.01 0.00 0.00 5.68
493 606 2.184167 CAACTGTTCCACCGGCGTT 61.184 57.895 6.01 0.00 0.00 4.84
625 754 2.683211 AAAGACCTTGGGATGCTTGT 57.317 45.000 0.00 0.00 0.00 3.16
627 756 1.915141 AGACCTTGGGATGCTTGTTG 58.085 50.000 0.00 0.00 0.00 3.33
636 765 0.971959 GATGCTTGTTGGGGGATGCA 60.972 55.000 0.00 0.00 34.88 3.96
696 825 6.215845 TGCTGCCTAAAGAAGAAAATTTCAC 58.784 36.000 8.55 2.08 0.00 3.18
723 852 5.294060 AGCGTAGTGAGCTTAACTAGAGTAC 59.706 44.000 9.76 1.78 43.24 2.73
731 860 6.374894 TGAGCTTAACTAGAGTACTGAGGTTC 59.625 42.308 0.00 0.00 0.00 3.62
744 873 9.220767 GAGTACTGAGGTTCAATAAAATCAAGT 57.779 33.333 0.00 0.00 0.00 3.16
961 1091 4.827087 CGCGAGGCCAGCTCATGT 62.827 66.667 18.93 0.00 0.00 3.21
1018 1148 1.476085 TCACAAAGCAACACACCAAGG 59.524 47.619 0.00 0.00 0.00 3.61
1052 1182 2.623418 TAGCTGGGTTCCAAGAGAGA 57.377 50.000 0.00 0.00 30.80 3.10
1053 1183 1.963985 AGCTGGGTTCCAAGAGAGAT 58.036 50.000 0.00 0.00 30.80 2.75
1054 1184 3.121929 AGCTGGGTTCCAAGAGAGATA 57.878 47.619 0.00 0.00 30.80 1.98
1055 1185 3.037549 AGCTGGGTTCCAAGAGAGATAG 58.962 50.000 0.00 0.00 30.80 2.08
1321 2444 2.671619 ACAATTCCCACCGTGCCG 60.672 61.111 0.00 0.00 0.00 5.69
1360 2483 4.927782 GTGCCAGGTGTGCCGACA 62.928 66.667 0.00 0.00 40.50 4.35
1540 2663 4.096003 CCAATGCCGTCCGTCCCT 62.096 66.667 0.00 0.00 0.00 4.20
1550 2673 2.063979 TCCGTCCCTGGCATACCTG 61.064 63.158 0.00 0.00 36.63 4.00
1708 2831 2.425592 CTTGCACCTCCACCGTCA 59.574 61.111 0.00 0.00 0.00 4.35
1783 2916 8.611654 AGTGTAATAAAACTGTAACGTTCCAT 57.388 30.769 2.82 0.00 0.00 3.41
1805 2938 8.066612 CCATCCATATGGTTTCTGTAACTTTT 57.933 34.615 21.28 0.00 46.68 2.27
1806 2939 8.531146 CCATCCATATGGTTTCTGTAACTTTTT 58.469 33.333 21.28 0.00 46.68 1.94
1828 2961 5.726980 TTTTTGAGCTGCATATGGTTTCT 57.273 34.783 4.56 0.00 0.00 2.52
1829 2962 4.707030 TTTGAGCTGCATATGGTTTCTG 57.293 40.909 4.56 0.00 0.00 3.02
1830 2963 3.354948 TGAGCTGCATATGGTTTCTGT 57.645 42.857 4.56 0.00 0.00 3.41
1831 2964 4.486125 TGAGCTGCATATGGTTTCTGTA 57.514 40.909 4.56 0.00 0.00 2.74
1832 2965 4.842574 TGAGCTGCATATGGTTTCTGTAA 58.157 39.130 4.56 0.00 0.00 2.41
1833 2966 4.635765 TGAGCTGCATATGGTTTCTGTAAC 59.364 41.667 4.56 0.00 35.94 2.50
1834 2967 4.848357 AGCTGCATATGGTTTCTGTAACT 58.152 39.130 4.56 0.00 36.93 2.24
1835 2968 5.256474 AGCTGCATATGGTTTCTGTAACTT 58.744 37.500 4.56 0.00 36.93 2.66
1836 2969 5.124457 AGCTGCATATGGTTTCTGTAACTTG 59.876 40.000 4.56 0.00 36.93 3.16
1837 2970 5.677091 GCTGCATATGGTTTCTGTAACTTGG 60.677 44.000 4.56 0.00 36.93 3.61
1838 2971 5.321102 TGCATATGGTTTCTGTAACTTGGT 58.679 37.500 4.56 0.00 36.93 3.67
1839 2972 6.477253 TGCATATGGTTTCTGTAACTTGGTA 58.523 36.000 4.56 0.00 36.93 3.25
1872 3011 1.335964 TGAGCAGCACTTGTCTACGTC 60.336 52.381 0.00 0.00 0.00 4.34
1923 3070 4.178540 ACGTGTGTGGTATATCTTTTCGG 58.821 43.478 0.00 0.00 0.00 4.30
1939 3094 3.591835 GGTTGGTGCGTGTGGTGG 61.592 66.667 0.00 0.00 0.00 4.61
2328 3620 8.267620 TGGACTTTGAGGATGAATAGTATCAT 57.732 34.615 0.00 0.00 42.62 2.45
2384 3676 1.198713 CTCCAGCCCAGAAGCTAAGA 58.801 55.000 0.00 0.00 42.61 2.10
2385 3677 1.138661 CTCCAGCCCAGAAGCTAAGAG 59.861 57.143 0.00 0.00 42.61 2.85
2386 3678 0.463474 CCAGCCCAGAAGCTAAGAGC 60.463 60.000 0.00 0.00 42.61 4.09
2387 3679 0.251354 CAGCCCAGAAGCTAAGAGCA 59.749 55.000 0.64 0.00 45.56 4.26
2388 3680 1.134159 CAGCCCAGAAGCTAAGAGCAT 60.134 52.381 0.64 0.00 45.56 3.79
2389 3681 1.140652 AGCCCAGAAGCTAAGAGCATC 59.859 52.381 0.64 0.00 45.56 3.91
2391 3683 5.068954 AGCCCAGAAGCTAAGAGCATCTC 62.069 52.174 3.35 0.00 45.00 2.75
2393 3685 7.928508 AGCCCAGAAGCTAAGAGCATCTCTA 62.929 48.000 3.35 0.00 45.00 2.43
2402 3694 1.960417 GAGCATCTCTAGCAAACCCC 58.040 55.000 0.00 0.00 0.00 4.95
2403 3695 0.179000 AGCATCTCTAGCAAACCCCG 59.821 55.000 0.00 0.00 0.00 5.73
2404 3696 1.440145 GCATCTCTAGCAAACCCCGC 61.440 60.000 0.00 0.00 0.00 6.13
2405 3697 0.107703 CATCTCTAGCAAACCCCGCA 60.108 55.000 0.00 0.00 0.00 5.69
2406 3698 0.839946 ATCTCTAGCAAACCCCGCAT 59.160 50.000 0.00 0.00 0.00 4.73
2407 3699 0.178068 TCTCTAGCAAACCCCGCATC 59.822 55.000 0.00 0.00 0.00 3.91
2408 3700 0.815615 CTCTAGCAAACCCCGCATCC 60.816 60.000 0.00 0.00 0.00 3.51
2409 3701 1.823899 CTAGCAAACCCCGCATCCC 60.824 63.158 0.00 0.00 0.00 3.85
2410 3702 3.690685 TAGCAAACCCCGCATCCCG 62.691 63.158 0.00 0.00 0.00 5.14
2421 3713 4.687215 CATCCCGCCGATCCGCAT 62.687 66.667 6.84 0.00 0.00 4.73
2422 3714 3.941188 ATCCCGCCGATCCGCATT 61.941 61.111 6.84 0.00 0.00 3.56
2423 3715 3.476031 ATCCCGCCGATCCGCATTT 62.476 57.895 6.84 0.00 0.00 2.32
2424 3716 3.649986 CCCGCCGATCCGCATTTC 61.650 66.667 6.84 0.00 0.00 2.17
2425 3717 2.894879 CCGCCGATCCGCATTTCA 60.895 61.111 6.84 0.00 0.00 2.69
2426 3718 2.324477 CGCCGATCCGCATTTCAC 59.676 61.111 6.84 0.00 0.00 3.18
2427 3719 2.324477 GCCGATCCGCATTTCACG 59.676 61.111 0.82 0.00 0.00 4.35
2428 3720 2.461110 GCCGATCCGCATTTCACGT 61.461 57.895 0.82 0.00 0.00 4.49
2429 3721 1.977594 GCCGATCCGCATTTCACGTT 61.978 55.000 0.82 0.00 0.00 3.99
2430 3722 0.446222 CCGATCCGCATTTCACGTTT 59.554 50.000 0.00 0.00 0.00 3.60
2431 3723 1.523501 CGATCCGCATTTCACGTTTG 58.476 50.000 0.00 0.00 0.00 2.93
2432 3724 1.259316 GATCCGCATTTCACGTTTGC 58.741 50.000 0.00 0.00 0.00 3.68
2433 3725 0.595588 ATCCGCATTTCACGTTTGCA 59.404 45.000 9.39 0.00 36.15 4.08
2434 3726 0.040514 TCCGCATTTCACGTTTGCAG 60.041 50.000 9.39 0.09 36.15 4.41
2435 3727 0.317770 CCGCATTTCACGTTTGCAGT 60.318 50.000 9.39 0.00 36.15 4.40
2436 3728 1.476074 CGCATTTCACGTTTGCAGTT 58.524 45.000 9.39 0.00 36.15 3.16
2437 3729 1.447938 CGCATTTCACGTTTGCAGTTC 59.552 47.619 9.39 0.00 36.15 3.01
2438 3730 1.447938 GCATTTCACGTTTGCAGTTCG 59.552 47.619 5.05 5.89 36.40 3.95
2439 3731 1.447938 CATTTCACGTTTGCAGTTCGC 59.552 47.619 7.06 0.00 42.89 4.70
2440 3732 0.587737 TTTCACGTTTGCAGTTCGCG 60.588 50.000 0.00 0.00 46.97 5.87
2441 3733 2.368131 TTCACGTTTGCAGTTCGCGG 62.368 55.000 6.13 0.00 46.97 6.46
2442 3734 2.586635 ACGTTTGCAGTTCGCGGA 60.587 55.556 6.13 0.00 46.97 5.54
2443 3735 2.174969 ACGTTTGCAGTTCGCGGAA 61.175 52.632 6.13 0.00 46.97 4.30
2444 3736 1.010574 CGTTTGCAGTTCGCGGAAA 60.011 52.632 6.13 0.00 46.97 3.13
2445 3737 0.590230 CGTTTGCAGTTCGCGGAAAA 60.590 50.000 6.13 0.00 46.97 2.29
2446 3738 1.120437 GTTTGCAGTTCGCGGAAAAG 58.880 50.000 6.13 0.00 46.97 2.27
2447 3739 0.593773 TTTGCAGTTCGCGGAAAAGC 60.594 50.000 6.13 2.69 46.97 3.51
2448 3740 1.444119 TTGCAGTTCGCGGAAAAGCT 61.444 50.000 6.13 0.00 46.97 3.74
2449 3741 1.441016 GCAGTTCGCGGAAAAGCTG 60.441 57.895 6.13 5.57 34.40 4.24
2450 3742 1.941812 CAGTTCGCGGAAAAGCTGT 59.058 52.632 6.13 0.00 34.40 4.40
2451 3743 0.307760 CAGTTCGCGGAAAAGCTGTT 59.692 50.000 6.13 0.00 34.40 3.16
2452 3744 1.021968 AGTTCGCGGAAAAGCTGTTT 58.978 45.000 6.13 0.00 34.40 2.83
2453 3745 1.404035 AGTTCGCGGAAAAGCTGTTTT 59.596 42.857 6.13 0.00 38.65 2.43
2454 3746 1.516864 GTTCGCGGAAAAGCTGTTTTG 59.483 47.619 6.13 0.00 35.94 2.44
2455 3747 0.593773 TCGCGGAAAAGCTGTTTTGC 60.594 50.000 6.13 4.41 39.83 3.68
2456 3748 0.869454 CGCGGAAAAGCTGTTTTGCA 60.869 50.000 12.76 0.00 42.51 4.08
2457 3749 0.854705 GCGGAAAAGCTGTTTTGCAG 59.145 50.000 8.67 0.00 42.51 4.41
2458 3750 1.802508 GCGGAAAAGCTGTTTTGCAGT 60.803 47.619 8.67 0.00 46.64 4.40
2459 3751 2.119457 CGGAAAAGCTGTTTTGCAGTC 58.881 47.619 3.70 0.00 46.64 3.51
2460 3752 2.223572 CGGAAAAGCTGTTTTGCAGTCT 60.224 45.455 3.70 0.00 46.64 3.24
2461 3753 3.118542 GGAAAAGCTGTTTTGCAGTCTG 58.881 45.455 0.00 0.00 46.64 3.51
2462 3754 2.214387 AAAGCTGTTTTGCAGTCTGC 57.786 45.000 18.32 18.32 46.64 4.26
2471 3763 4.834828 GCAGTCTGCAGCGAAAAG 57.165 55.556 20.16 0.00 44.26 2.27
2472 3764 1.441682 GCAGTCTGCAGCGAAAAGC 60.442 57.895 20.16 3.29 44.26 3.51
2473 3765 2.793010 GCAGTCTGCAGCGAAAAGCC 62.793 60.000 20.16 0.00 44.26 4.35
2492 3784 4.020617 CAGAGGCAGACCCCGCAA 62.021 66.667 0.00 0.00 36.11 4.85
2493 3785 3.249189 AGAGGCAGACCCCGCAAA 61.249 61.111 0.00 0.00 36.11 3.68
2494 3786 2.747855 GAGGCAGACCCCGCAAAG 60.748 66.667 0.00 0.00 36.11 2.77
2498 3790 4.697756 CAGACCCCGCAAAGCCGA 62.698 66.667 0.00 0.00 0.00 5.54
2499 3791 4.699522 AGACCCCGCAAAGCCGAC 62.700 66.667 0.00 0.00 0.00 4.79
2506 3798 4.179579 GCAAAGCCGACCCGCATC 62.180 66.667 0.00 0.00 0.00 3.91
2507 3799 3.508840 CAAAGCCGACCCGCATCC 61.509 66.667 0.00 0.00 0.00 3.51
2508 3800 3.717294 AAAGCCGACCCGCATCCT 61.717 61.111 0.00 0.00 0.00 3.24
2509 3801 3.976701 AAAGCCGACCCGCATCCTG 62.977 63.158 0.00 0.00 0.00 3.86
2511 3803 4.778143 GCCGACCCGCATCCTGTT 62.778 66.667 0.00 0.00 0.00 3.16
2512 3804 2.046314 CCGACCCGCATCCTGTTT 60.046 61.111 0.00 0.00 0.00 2.83
2513 3805 1.674322 CCGACCCGCATCCTGTTTT 60.674 57.895 0.00 0.00 0.00 2.43
2514 3806 0.391927 CCGACCCGCATCCTGTTTTA 60.392 55.000 0.00 0.00 0.00 1.52
2515 3807 0.725117 CGACCCGCATCCTGTTTTAC 59.275 55.000 0.00 0.00 0.00 2.01
2516 3808 0.725117 GACCCGCATCCTGTTTTACG 59.275 55.000 0.00 0.00 0.00 3.18
2517 3809 0.675522 ACCCGCATCCTGTTTTACGG 60.676 55.000 0.00 0.00 40.30 4.02
2518 3810 2.094904 CCGCATCCTGTTTTACGGG 58.905 57.895 0.00 0.00 46.14 5.28
2519 3811 0.675522 CCGCATCCTGTTTTACGGGT 60.676 55.000 4.69 0.00 45.01 5.28
2520 3812 0.725117 CGCATCCTGTTTTACGGGTC 59.275 55.000 4.69 0.00 45.01 4.46
2521 3813 0.725117 GCATCCTGTTTTACGGGTCG 59.275 55.000 4.69 0.00 45.01 4.79
2522 3814 0.725117 CATCCTGTTTTACGGGTCGC 59.275 55.000 4.69 0.00 45.01 5.19
2523 3815 0.611714 ATCCTGTTTTACGGGTCGCT 59.388 50.000 4.69 0.00 45.01 4.93
2524 3816 0.393820 TCCTGTTTTACGGGTCGCTT 59.606 50.000 4.69 0.00 45.01 4.68
2525 3817 1.202675 TCCTGTTTTACGGGTCGCTTT 60.203 47.619 4.69 0.00 45.01 3.51
2526 3818 1.069500 CCTGTTTTACGGGTCGCTTTG 60.069 52.381 0.00 0.00 39.82 2.77
2527 3819 0.308376 TGTTTTACGGGTCGCTTTGC 59.692 50.000 0.00 0.00 0.00 3.68
2539 3831 3.058160 CTTTGCGGGGTCTGCCTG 61.058 66.667 0.00 0.00 34.45 4.85
2540 3832 3.850098 CTTTGCGGGGTCTGCCTGT 62.850 63.158 0.00 0.00 34.45 4.00
2541 3833 4.641645 TTGCGGGGTCTGCCTGTG 62.642 66.667 0.00 0.00 34.45 3.66
2567 3859 3.407967 CTCCCCCTAGCCCGCAAA 61.408 66.667 0.00 0.00 0.00 3.68
2568 3860 2.936584 TCCCCCTAGCCCGCAAAA 60.937 61.111 0.00 0.00 0.00 2.44
2569 3861 2.278738 CCCCCTAGCCCGCAAAAT 59.721 61.111 0.00 0.00 0.00 1.82
2570 3862 2.127232 CCCCCTAGCCCGCAAAATG 61.127 63.158 0.00 0.00 0.00 2.32
2571 3863 1.379843 CCCCTAGCCCGCAAAATGT 60.380 57.895 0.00 0.00 0.00 2.71
2572 3864 0.106918 CCCCTAGCCCGCAAAATGTA 60.107 55.000 0.00 0.00 0.00 2.29
2573 3865 1.683629 CCCCTAGCCCGCAAAATGTAA 60.684 52.381 0.00 0.00 0.00 2.41
2574 3866 2.096248 CCCTAGCCCGCAAAATGTAAA 58.904 47.619 0.00 0.00 0.00 2.01
2575 3867 2.693074 CCCTAGCCCGCAAAATGTAAAT 59.307 45.455 0.00 0.00 0.00 1.40
2576 3868 3.132111 CCCTAGCCCGCAAAATGTAAATT 59.868 43.478 0.00 0.00 0.00 1.82
2577 3869 4.382577 CCCTAGCCCGCAAAATGTAAATTT 60.383 41.667 0.00 0.00 0.00 1.82
2578 3870 4.566360 CCTAGCCCGCAAAATGTAAATTTG 59.434 41.667 0.00 0.00 40.04 2.32
2590 3882 8.683774 CAAAATGTAAATTTGCACTCAATTTGC 58.316 29.630 11.35 14.02 40.63 3.68
2596 3888 1.689984 TGCACTCAATTTGCACCTCA 58.310 45.000 0.00 0.00 45.06 3.86
2597 3889 2.030371 TGCACTCAATTTGCACCTCAA 58.970 42.857 0.00 0.00 45.06 3.02
2598 3890 2.629137 TGCACTCAATTTGCACCTCAAT 59.371 40.909 0.00 0.00 45.06 2.57
2599 3891 3.069872 TGCACTCAATTTGCACCTCAATT 59.930 39.130 0.00 0.00 45.06 2.32
2600 3892 4.060205 GCACTCAATTTGCACCTCAATTT 58.940 39.130 0.00 0.00 39.93 1.82
2601 3893 4.084223 GCACTCAATTTGCACCTCAATTTG 60.084 41.667 0.00 6.13 42.74 2.32
2602 3894 4.060205 ACTCAATTTGCACCTCAATTTGC 58.940 39.130 0.00 0.00 41.88 3.68
2603 3895 4.059511 CTCAATTTGCACCTCAATTTGCA 58.940 39.130 0.00 0.00 46.93 4.08
2609 3901 4.339872 TGCACCTCAATTTGCATTTCTT 57.660 36.364 0.00 0.00 43.79 2.52
2610 3902 4.706035 TGCACCTCAATTTGCATTTCTTT 58.294 34.783 0.00 0.00 43.79 2.52
2611 3903 4.512198 TGCACCTCAATTTGCATTTCTTTG 59.488 37.500 0.00 0.00 43.79 2.77
2612 3904 4.612033 GCACCTCAATTTGCATTTCTTTGC 60.612 41.667 0.00 0.00 43.07 3.68
2623 3915 5.421212 GCATTTCTTTGCATTTTCAACCA 57.579 34.783 0.00 0.00 42.31 3.67
2624 3916 5.207033 GCATTTCTTTGCATTTTCAACCAC 58.793 37.500 0.00 0.00 42.31 4.16
2625 3917 5.220815 GCATTTCTTTGCATTTTCAACCACA 60.221 36.000 0.00 0.00 42.31 4.17
2626 3918 6.513720 GCATTTCTTTGCATTTTCAACCACAT 60.514 34.615 0.00 0.00 42.31 3.21
2627 3919 6.998968 TTTCTTTGCATTTTCAACCACATT 57.001 29.167 0.00 0.00 0.00 2.71
2628 3920 5.987777 TCTTTGCATTTTCAACCACATTG 57.012 34.783 0.00 0.00 39.94 2.82
2629 3921 4.815308 TCTTTGCATTTTCAACCACATTGG 59.185 37.500 0.00 0.00 45.02 3.16
2630 3922 4.412796 TTGCATTTTCAACCACATTGGA 57.587 36.364 0.00 0.00 40.96 3.53
2631 3923 4.620589 TGCATTTTCAACCACATTGGAT 57.379 36.364 0.00 0.00 40.96 3.41
2632 3924 5.735285 TGCATTTTCAACCACATTGGATA 57.265 34.783 0.00 0.00 40.96 2.59
2633 3925 5.477510 TGCATTTTCAACCACATTGGATAC 58.522 37.500 0.00 0.00 40.96 2.24
2649 3941 5.966853 TGGATACATAGGACATCACCAAA 57.033 39.130 0.00 0.00 46.17 3.28
2650 3942 6.514012 TGGATACATAGGACATCACCAAAT 57.486 37.500 0.00 0.00 46.17 2.32
2651 3943 6.910191 TGGATACATAGGACATCACCAAATT 58.090 36.000 0.00 0.00 46.17 1.82
2652 3944 7.353525 TGGATACATAGGACATCACCAAATTT 58.646 34.615 0.00 0.00 46.17 1.82
2653 3945 7.838696 TGGATACATAGGACATCACCAAATTTT 59.161 33.333 0.00 0.00 46.17 1.82
2654 3946 8.695456 GGATACATAGGACATCACCAAATTTTT 58.305 33.333 0.00 0.00 0.00 1.94
2655 3947 9.520204 GATACATAGGACATCACCAAATTTTTG 57.480 33.333 0.00 0.00 37.90 2.44
2656 3948 6.165577 ACATAGGACATCACCAAATTTTTGC 58.834 36.000 0.00 0.00 36.86 3.68
2657 3949 4.961438 AGGACATCACCAAATTTTTGCT 57.039 36.364 0.00 0.00 36.86 3.91
2658 3950 7.178274 ACATAGGACATCACCAAATTTTTGCTA 59.822 33.333 0.00 0.00 36.86 3.49
2659 3951 6.029346 AGGACATCACCAAATTTTTGCTAG 57.971 37.500 0.00 0.00 36.86 3.42
2660 3952 5.774690 AGGACATCACCAAATTTTTGCTAGA 59.225 36.000 0.00 0.00 36.86 2.43
2661 3953 6.267471 AGGACATCACCAAATTTTTGCTAGAA 59.733 34.615 0.00 0.00 36.86 2.10
2662 3954 6.928492 GGACATCACCAAATTTTTGCTAGAAA 59.072 34.615 0.00 0.00 36.86 2.52
2663 3955 7.440856 GGACATCACCAAATTTTTGCTAGAAAA 59.559 33.333 0.00 0.00 36.86 2.29
2664 3956 8.369218 ACATCACCAAATTTTTGCTAGAAAAG 57.631 30.769 0.00 0.00 36.86 2.27
2677 3969 4.853924 CTAGAAAAGCAAGCCCAAAGAA 57.146 40.909 0.00 0.00 0.00 2.52
2678 3970 5.200368 CTAGAAAAGCAAGCCCAAAGAAA 57.800 39.130 0.00 0.00 0.00 2.52
2679 3971 4.486125 AGAAAAGCAAGCCCAAAGAAAA 57.514 36.364 0.00 0.00 0.00 2.29
2680 3972 4.191544 AGAAAAGCAAGCCCAAAGAAAAC 58.808 39.130 0.00 0.00 0.00 2.43
2681 3973 3.625649 AAAGCAAGCCCAAAGAAAACA 57.374 38.095 0.00 0.00 0.00 2.83
2682 3974 3.625649 AAGCAAGCCCAAAGAAAACAA 57.374 38.095 0.00 0.00 0.00 2.83
2683 3975 3.183793 AGCAAGCCCAAAGAAAACAAG 57.816 42.857 0.00 0.00 0.00 3.16
2684 3976 2.765699 AGCAAGCCCAAAGAAAACAAGA 59.234 40.909 0.00 0.00 0.00 3.02
2685 3977 3.197549 AGCAAGCCCAAAGAAAACAAGAA 59.802 39.130 0.00 0.00 0.00 2.52
2686 3978 3.309682 GCAAGCCCAAAGAAAACAAGAAC 59.690 43.478 0.00 0.00 0.00 3.01
2687 3979 3.819564 AGCCCAAAGAAAACAAGAACC 57.180 42.857 0.00 0.00 0.00 3.62
2688 3980 3.103742 AGCCCAAAGAAAACAAGAACCA 58.896 40.909 0.00 0.00 0.00 3.67
2689 3981 3.118775 AGCCCAAAGAAAACAAGAACCAC 60.119 43.478 0.00 0.00 0.00 4.16
2690 3982 3.368948 GCCCAAAGAAAACAAGAACCACA 60.369 43.478 0.00 0.00 0.00 4.17
2691 3983 4.826556 CCCAAAGAAAACAAGAACCACAA 58.173 39.130 0.00 0.00 0.00 3.33
2692 3984 4.869861 CCCAAAGAAAACAAGAACCACAAG 59.130 41.667 0.00 0.00 0.00 3.16
2693 3985 5.478407 CCAAAGAAAACAAGAACCACAAGT 58.522 37.500 0.00 0.00 0.00 3.16
2694 3986 6.350612 CCCAAAGAAAACAAGAACCACAAGTA 60.351 38.462 0.00 0.00 0.00 2.24
2695 3987 7.264947 CCAAAGAAAACAAGAACCACAAGTAT 58.735 34.615 0.00 0.00 0.00 2.12
2696 3988 7.222611 CCAAAGAAAACAAGAACCACAAGTATG 59.777 37.037 0.00 0.00 0.00 2.39
2697 3989 5.831997 AGAAAACAAGAACCACAAGTATGC 58.168 37.500 0.00 0.00 0.00 3.14
2698 3990 5.359576 AGAAAACAAGAACCACAAGTATGCA 59.640 36.000 0.00 0.00 0.00 3.96
2699 3991 5.789643 AAACAAGAACCACAAGTATGCAT 57.210 34.783 3.79 3.79 0.00 3.96
2700 3992 5.789643 AACAAGAACCACAAGTATGCATT 57.210 34.783 3.54 0.00 0.00 3.56
2701 3993 5.789643 ACAAGAACCACAAGTATGCATTT 57.210 34.783 3.54 0.00 0.00 2.32
2702 3994 6.160576 ACAAGAACCACAAGTATGCATTTT 57.839 33.333 3.54 0.00 0.00 1.82
2703 3995 7.283625 ACAAGAACCACAAGTATGCATTTTA 57.716 32.000 3.54 0.00 0.00 1.52
2704 3996 7.370383 ACAAGAACCACAAGTATGCATTTTAG 58.630 34.615 3.54 0.00 0.00 1.85
2705 3997 7.230510 ACAAGAACCACAAGTATGCATTTTAGA 59.769 33.333 3.54 0.00 0.00 2.10
2706 3998 7.759489 AGAACCACAAGTATGCATTTTAGAA 57.241 32.000 3.54 0.00 0.00 2.10
2707 3999 7.820648 AGAACCACAAGTATGCATTTTAGAAG 58.179 34.615 3.54 0.00 0.00 2.85
2708 4000 7.665559 AGAACCACAAGTATGCATTTTAGAAGA 59.334 33.333 3.54 0.00 0.00 2.87
2709 4001 7.944729 ACCACAAGTATGCATTTTAGAAGAT 57.055 32.000 3.54 0.00 0.00 2.40
2710 4002 8.353423 ACCACAAGTATGCATTTTAGAAGATT 57.647 30.769 3.54 0.00 0.00 2.40
2711 4003 8.806146 ACCACAAGTATGCATTTTAGAAGATTT 58.194 29.630 3.54 0.00 0.00 2.17
2712 4004 9.294030 CCACAAGTATGCATTTTAGAAGATTTC 57.706 33.333 3.54 0.00 0.00 2.17
2728 4020 8.499403 AGAAGATTTCTAACTTCCATAACTGC 57.501 34.615 0.00 0.00 42.09 4.40
2729 4021 8.325046 AGAAGATTTCTAACTTCCATAACTGCT 58.675 33.333 0.00 0.00 42.09 4.24
2730 4022 8.499403 AAGATTTCTAACTTCCATAACTGCTC 57.501 34.615 0.00 0.00 0.00 4.26
2731 4023 7.051000 AGATTTCTAACTTCCATAACTGCTCC 58.949 38.462 0.00 0.00 0.00 4.70
2732 4024 4.755266 TCTAACTTCCATAACTGCTCCC 57.245 45.455 0.00 0.00 0.00 4.30
2733 4025 4.101114 TCTAACTTCCATAACTGCTCCCA 58.899 43.478 0.00 0.00 0.00 4.37
2734 4026 3.806949 AACTTCCATAACTGCTCCCAA 57.193 42.857 0.00 0.00 0.00 4.12
2735 4027 3.356529 ACTTCCATAACTGCTCCCAAG 57.643 47.619 0.00 0.00 0.00 3.61
2736 4028 2.912956 ACTTCCATAACTGCTCCCAAGA 59.087 45.455 0.00 0.00 0.00 3.02
2737 4029 3.054802 ACTTCCATAACTGCTCCCAAGAG 60.055 47.826 0.00 0.00 43.57 2.85
2738 4030 2.551270 TCCATAACTGCTCCCAAGAGT 58.449 47.619 0.00 0.00 42.59 3.24
2739 4031 2.912956 TCCATAACTGCTCCCAAGAGTT 59.087 45.455 0.00 0.00 42.59 3.01
2740 4032 3.012518 CCATAACTGCTCCCAAGAGTTG 58.987 50.000 0.00 0.00 42.59 3.16
2741 4033 3.307691 CCATAACTGCTCCCAAGAGTTGA 60.308 47.826 0.00 0.00 42.59 3.18
2742 4034 4.326826 CATAACTGCTCCCAAGAGTTGAA 58.673 43.478 0.00 0.00 42.59 2.69
2743 4035 2.557920 ACTGCTCCCAAGAGTTGAAG 57.442 50.000 0.00 0.00 42.59 3.02
2744 4036 1.163554 CTGCTCCCAAGAGTTGAAGC 58.836 55.000 6.92 6.92 42.59 3.86
2745 4037 0.473755 TGCTCCCAAGAGTTGAAGCA 59.526 50.000 10.70 10.70 42.59 3.91
2746 4038 1.133823 TGCTCCCAAGAGTTGAAGCAA 60.134 47.619 11.78 0.00 42.59 3.91
2747 4039 2.165998 GCTCCCAAGAGTTGAAGCAAT 58.834 47.619 8.33 0.00 42.59 3.56
2748 4040 3.244875 TGCTCCCAAGAGTTGAAGCAATA 60.245 43.478 11.78 0.00 42.59 1.90
2749 4041 3.950395 GCTCCCAAGAGTTGAAGCAATAT 59.050 43.478 8.33 0.00 42.59 1.28
2750 4042 4.036144 GCTCCCAAGAGTTGAAGCAATATC 59.964 45.833 8.33 0.00 42.59 1.63
2751 4043 5.435291 CTCCCAAGAGTTGAAGCAATATCT 58.565 41.667 0.00 0.00 35.21 1.98
2752 4044 5.819991 TCCCAAGAGTTGAAGCAATATCTT 58.180 37.500 0.00 0.00 34.74 2.40
2753 4045 5.649395 TCCCAAGAGTTGAAGCAATATCTTG 59.351 40.000 19.97 19.97 42.67 3.02
2754 4046 5.416952 CCCAAGAGTTGAAGCAATATCTTGT 59.583 40.000 22.42 2.79 42.15 3.16
2755 4047 6.404074 CCCAAGAGTTGAAGCAATATCTTGTC 60.404 42.308 22.42 0.00 42.15 3.18
2756 4048 6.404074 CCAAGAGTTGAAGCAATATCTTGTCC 60.404 42.308 22.42 0.00 42.15 4.02
2757 4049 5.809001 AGAGTTGAAGCAATATCTTGTCCA 58.191 37.500 0.00 0.00 34.69 4.02
2758 4050 6.421485 AGAGTTGAAGCAATATCTTGTCCAT 58.579 36.000 0.00 0.00 34.69 3.41
2759 4051 6.318144 AGAGTTGAAGCAATATCTTGTCCATG 59.682 38.462 0.00 0.00 34.69 3.66
2760 4052 4.906065 TGAAGCAATATCTTGTCCATGC 57.094 40.909 0.00 0.00 34.69 4.06
2761 4053 4.271661 TGAAGCAATATCTTGTCCATGCA 58.728 39.130 0.00 0.00 36.30 3.96
2762 4054 4.096833 TGAAGCAATATCTTGTCCATGCAC 59.903 41.667 0.00 0.00 36.30 4.57
2763 4055 3.894759 AGCAATATCTTGTCCATGCACT 58.105 40.909 0.00 0.00 36.30 4.40
2764 4056 3.881688 AGCAATATCTTGTCCATGCACTC 59.118 43.478 0.00 0.00 36.30 3.51
2765 4057 3.628942 GCAATATCTTGTCCATGCACTCA 59.371 43.478 0.00 0.00 34.69 3.41
2766 4058 4.277672 GCAATATCTTGTCCATGCACTCAT 59.722 41.667 0.00 0.00 34.69 2.90
2767 4059 5.221185 GCAATATCTTGTCCATGCACTCATT 60.221 40.000 0.00 0.00 34.69 2.57
2768 4060 6.206498 CAATATCTTGTCCATGCACTCATTG 58.794 40.000 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.159819 GAGTTCGTGGAGGCTGAGCA 62.160 60.000 6.82 0.00 0.00 4.26
137 138 2.203070 CCATGGACGCTACCCAGC 60.203 66.667 5.56 0.00 44.90 4.85
191 204 1.208844 TCCCCTCTCGACCTCTCACT 61.209 60.000 0.00 0.00 0.00 3.41
471 564 1.098712 GCCGGTGGAACAGTTGTTGA 61.099 55.000 1.90 0.00 41.80 3.18
618 747 0.974010 CTGCATCCCCCAACAAGCAT 60.974 55.000 0.00 0.00 0.00 3.79
620 749 3.010413 GCTGCATCCCCCAACAAGC 62.010 63.158 0.00 0.00 0.00 4.01
623 752 2.036098 CAGCTGCATCCCCCAACA 59.964 61.111 0.00 0.00 0.00 3.33
624 753 2.757099 CCAGCTGCATCCCCCAAC 60.757 66.667 8.66 0.00 0.00 3.77
625 754 2.940467 TCCAGCTGCATCCCCCAA 60.940 61.111 8.66 0.00 0.00 4.12
627 756 2.459086 ATCTCCAGCTGCATCCCCC 61.459 63.158 8.66 0.00 0.00 5.40
636 765 3.069872 CACTTCTCATAGCATCTCCAGCT 59.930 47.826 0.00 0.00 45.77 4.24
684 813 4.023193 CACTACGCTGGGTGAAATTTTCTT 60.023 41.667 7.71 0.00 35.69 2.52
696 825 1.204941 AGTTAAGCTCACTACGCTGGG 59.795 52.381 0.00 0.00 37.87 4.45
723 852 9.294030 GCATTACTTGATTTTATTGAACCTCAG 57.706 33.333 0.00 0.00 0.00 3.35
731 860 7.815398 TGCAGTGCATTACTTGATTTTATTG 57.185 32.000 15.37 0.00 37.60 1.90
759 888 0.942962 GCAACATGCTAGGCTGCTAG 59.057 55.000 0.00 0.84 40.96 3.42
760 889 0.252761 TGCAACATGCTAGGCTGCTA 59.747 50.000 0.00 0.00 45.31 3.49
761 890 0.395311 ATGCAACATGCTAGGCTGCT 60.395 50.000 0.00 0.00 45.31 4.24
762 891 0.248907 CATGCAACATGCTAGGCTGC 60.249 55.000 0.00 0.00 45.31 5.25
763 892 0.384309 CCATGCAACATGCTAGGCTG 59.616 55.000 0.00 0.00 45.31 4.85
764 893 0.256752 TCCATGCAACATGCTAGGCT 59.743 50.000 3.78 0.00 45.31 4.58
961 1091 2.479389 GCTGCGTGCCAATTTTATAGCA 60.479 45.455 0.00 0.00 35.15 3.49
1018 1148 2.875786 GCTAAGCGCGATGTGGCTC 61.876 63.158 12.10 0.00 38.88 4.70
1052 1182 6.418057 AGTCACTACGTACCTAGTAGCTAT 57.582 41.667 0.00 0.00 43.86 2.97
1053 1183 5.860941 AGTCACTACGTACCTAGTAGCTA 57.139 43.478 4.49 0.00 43.86 3.32
1054 1184 4.751767 AGTCACTACGTACCTAGTAGCT 57.248 45.455 4.49 0.00 43.86 3.32
1055 1185 4.447389 GCTAGTCACTACGTACCTAGTAGC 59.553 50.000 13.31 13.31 43.86 3.58
1399 2522 3.260100 CCTGGCAGGGTGGGAACT 61.260 66.667 26.34 0.00 0.00 3.01
1525 2648 4.096003 CCAGGGACGGACGGCATT 62.096 66.667 0.00 0.00 0.00 3.56
1544 2667 1.450312 GCAGCGGCAAGTCAGGTAT 60.450 57.895 3.18 0.00 40.72 2.73
1740 2863 2.910482 CACTTGTAAATCGTGCATGCAC 59.090 45.455 35.76 35.76 43.01 4.57
1741 2864 2.551887 ACACTTGTAAATCGTGCATGCA 59.448 40.909 18.46 18.46 32.07 3.96
1742 2865 3.201726 ACACTTGTAAATCGTGCATGC 57.798 42.857 11.82 11.82 32.07 4.06
1757 2888 8.436046 TGGAACGTTACAGTTTTATTACACTT 57.564 30.769 9.75 0.00 34.00 3.16
1806 2939 5.010922 ACAGAAACCATATGCAGCTCAAAAA 59.989 36.000 0.00 0.00 0.00 1.94
1807 2940 4.523943 ACAGAAACCATATGCAGCTCAAAA 59.476 37.500 0.00 0.00 0.00 2.44
1808 2941 4.081406 ACAGAAACCATATGCAGCTCAAA 58.919 39.130 0.00 0.00 0.00 2.69
1809 2942 3.689347 ACAGAAACCATATGCAGCTCAA 58.311 40.909 0.00 0.00 0.00 3.02
1810 2943 3.354948 ACAGAAACCATATGCAGCTCA 57.645 42.857 0.00 0.00 0.00 4.26
1811 2944 4.878397 AGTTACAGAAACCATATGCAGCTC 59.122 41.667 0.00 0.00 39.03 4.09
1812 2945 4.848357 AGTTACAGAAACCATATGCAGCT 58.152 39.130 0.00 0.00 39.03 4.24
1813 2946 5.335127 CAAGTTACAGAAACCATATGCAGC 58.665 41.667 0.00 0.00 39.03 5.25
1814 2947 5.415701 ACCAAGTTACAGAAACCATATGCAG 59.584 40.000 0.00 0.00 39.03 4.41
1815 2948 5.321102 ACCAAGTTACAGAAACCATATGCA 58.679 37.500 0.00 0.00 39.03 3.96
1816 2949 5.897377 ACCAAGTTACAGAAACCATATGC 57.103 39.130 0.00 0.00 39.03 3.14
1817 2950 9.314321 CTACTACCAAGTTACAGAAACCATATG 57.686 37.037 0.00 0.00 39.03 1.78
1818 2951 9.043548 ACTACTACCAAGTTACAGAAACCATAT 57.956 33.333 0.00 0.00 39.03 1.78
1819 2952 8.426569 ACTACTACCAAGTTACAGAAACCATA 57.573 34.615 0.00 0.00 39.03 2.74
1820 2953 7.312415 ACTACTACCAAGTTACAGAAACCAT 57.688 36.000 0.00 0.00 39.03 3.55
1821 2954 6.736110 ACTACTACCAAGTTACAGAAACCA 57.264 37.500 0.00 0.00 39.03 3.67
1822 2955 9.363763 GAATACTACTACCAAGTTACAGAAACC 57.636 37.037 0.00 0.00 39.03 3.27
1823 2956 9.070149 CGAATACTACTACCAAGTTACAGAAAC 57.930 37.037 0.00 0.00 37.15 2.78
1824 2957 8.796475 ACGAATACTACTACCAAGTTACAGAAA 58.204 33.333 0.00 0.00 37.15 2.52
1825 2958 8.340618 ACGAATACTACTACCAAGTTACAGAA 57.659 34.615 0.00 0.00 37.15 3.02
1826 2959 7.928307 ACGAATACTACTACCAAGTTACAGA 57.072 36.000 0.00 0.00 37.15 3.41
1827 2960 8.857216 CAAACGAATACTACTACCAAGTTACAG 58.143 37.037 0.00 0.00 37.15 2.74
1828 2961 8.575589 TCAAACGAATACTACTACCAAGTTACA 58.424 33.333 0.00 0.00 37.15 2.41
1829 2962 8.970691 TCAAACGAATACTACTACCAAGTTAC 57.029 34.615 0.00 0.00 37.15 2.50
1830 2963 7.756722 GCTCAAACGAATACTACTACCAAGTTA 59.243 37.037 0.00 0.00 37.15 2.24
1831 2964 6.589139 GCTCAAACGAATACTACTACCAAGTT 59.411 38.462 0.00 0.00 37.15 2.66
1832 2965 6.098017 GCTCAAACGAATACTACTACCAAGT 58.902 40.000 0.00 0.00 39.91 3.16
1833 2966 6.097356 TGCTCAAACGAATACTACTACCAAG 58.903 40.000 0.00 0.00 0.00 3.61
1834 2967 6.028146 TGCTCAAACGAATACTACTACCAA 57.972 37.500 0.00 0.00 0.00 3.67
1835 2968 5.647589 CTGCTCAAACGAATACTACTACCA 58.352 41.667 0.00 0.00 0.00 3.25
1836 2969 4.503370 GCTGCTCAAACGAATACTACTACC 59.497 45.833 0.00 0.00 0.00 3.18
1837 2970 5.004535 GTGCTGCTCAAACGAATACTACTAC 59.995 44.000 0.00 0.00 0.00 2.73
1838 2971 5.100259 GTGCTGCTCAAACGAATACTACTA 58.900 41.667 0.00 0.00 0.00 1.82
1839 2972 3.927142 GTGCTGCTCAAACGAATACTACT 59.073 43.478 0.00 0.00 0.00 2.57
1923 3070 3.591835 CCCACCACACGCACCAAC 61.592 66.667 0.00 0.00 0.00 3.77
1939 3094 3.543680 AGCATACAGTACACACATCCC 57.456 47.619 0.00 0.00 0.00 3.85
2198 3402 3.906846 ACCAAAATGCCCCACTTCAATAA 59.093 39.130 0.00 0.00 0.00 1.40
2199 3403 3.260380 CACCAAAATGCCCCACTTCAATA 59.740 43.478 0.00 0.00 0.00 1.90
2201 3405 1.415659 CACCAAAATGCCCCACTTCAA 59.584 47.619 0.00 0.00 0.00 2.69
2204 3408 1.047801 GTCACCAAAATGCCCCACTT 58.952 50.000 0.00 0.00 0.00 3.16
2290 3509 0.329596 AAGTCCATGGAGTTGGCCTC 59.670 55.000 30.14 10.08 36.53 4.70
2291 3510 0.779997 AAAGTCCATGGAGTTGGCCT 59.220 50.000 31.09 15.67 37.78 5.19
2292 3511 0.890683 CAAAGTCCATGGAGTTGGCC 59.109 55.000 31.09 12.23 37.78 5.36
2293 3512 1.815003 CTCAAAGTCCATGGAGTTGGC 59.185 52.381 31.09 12.95 37.78 4.52
2294 3513 2.040278 TCCTCAAAGTCCATGGAGTTGG 59.960 50.000 31.09 28.30 37.78 3.77
2298 3590 3.920231 TCATCCTCAAAGTCCATGGAG 57.080 47.619 16.81 3.10 0.00 3.86
2300 3592 5.688807 ACTATTCATCCTCAAAGTCCATGG 58.311 41.667 4.97 4.97 0.00 3.66
2328 3620 1.334160 TGGAGCAACGAGTCACCTAA 58.666 50.000 0.00 0.00 0.00 2.69
2332 3624 1.197721 CCAATTGGAGCAACGAGTCAC 59.802 52.381 20.50 0.00 37.39 3.67
2384 3676 0.179000 CGGGGTTTGCTAGAGATGCT 59.821 55.000 0.00 0.00 0.00 3.79
2385 3677 1.440145 GCGGGGTTTGCTAGAGATGC 61.440 60.000 0.00 0.00 0.00 3.91
2386 3678 0.107703 TGCGGGGTTTGCTAGAGATG 60.108 55.000 0.00 0.00 0.00 2.90
2387 3679 0.839946 ATGCGGGGTTTGCTAGAGAT 59.160 50.000 0.00 0.00 0.00 2.75
2388 3680 0.178068 GATGCGGGGTTTGCTAGAGA 59.822 55.000 0.00 0.00 0.00 3.10
2389 3681 0.815615 GGATGCGGGGTTTGCTAGAG 60.816 60.000 0.00 0.00 0.00 2.43
2390 3682 1.223487 GGATGCGGGGTTTGCTAGA 59.777 57.895 0.00 0.00 0.00 2.43
2391 3683 1.823899 GGGATGCGGGGTTTGCTAG 60.824 63.158 0.00 0.00 0.00 3.42
2392 3684 2.274104 GGGATGCGGGGTTTGCTA 59.726 61.111 0.00 0.00 0.00 3.49
2404 3696 4.687215 ATGCGGATCGGCGGGATG 62.687 66.667 19.00 0.00 34.82 3.51
2405 3697 3.476031 AAATGCGGATCGGCGGGAT 62.476 57.895 19.00 5.85 38.35 3.85
2406 3698 4.169696 AAATGCGGATCGGCGGGA 62.170 61.111 19.00 3.68 35.06 5.14
2407 3699 3.649986 GAAATGCGGATCGGCGGG 61.650 66.667 19.00 0.00 35.06 6.13
2408 3700 2.894879 TGAAATGCGGATCGGCGG 60.895 61.111 19.00 0.00 35.06 6.13
2409 3701 2.324477 GTGAAATGCGGATCGGCG 59.676 61.111 19.00 0.00 35.06 6.46
2410 3702 1.977594 AACGTGAAATGCGGATCGGC 61.978 55.000 17.70 17.70 0.00 5.54
2411 3703 0.446222 AAACGTGAAATGCGGATCGG 59.554 50.000 0.00 0.00 0.00 4.18
2412 3704 1.523501 CAAACGTGAAATGCGGATCG 58.476 50.000 0.00 0.00 0.00 3.69
2413 3705 1.259316 GCAAACGTGAAATGCGGATC 58.741 50.000 0.00 0.00 0.00 3.36
2414 3706 0.595588 TGCAAACGTGAAATGCGGAT 59.404 45.000 10.13 0.00 42.91 4.18
2415 3707 0.040514 CTGCAAACGTGAAATGCGGA 60.041 50.000 15.62 0.00 46.86 5.54
2416 3708 2.423202 CTGCAAACGTGAAATGCGG 58.577 52.632 9.40 9.40 42.91 5.69
2417 3709 1.447938 GAACTGCAAACGTGAAATGCG 59.552 47.619 10.13 8.06 42.91 4.73
2418 3710 1.447938 CGAACTGCAAACGTGAAATGC 59.552 47.619 8.44 8.44 40.45 3.56
2419 3711 1.447938 GCGAACTGCAAACGTGAAATG 59.552 47.619 0.00 0.00 45.45 2.32
2420 3712 1.753956 GCGAACTGCAAACGTGAAAT 58.246 45.000 0.00 0.00 45.45 2.17
2421 3713 0.587737 CGCGAACTGCAAACGTGAAA 60.588 50.000 0.00 0.00 46.97 2.69
2422 3714 1.011684 CGCGAACTGCAAACGTGAA 60.012 52.632 0.00 0.00 46.97 3.18
2423 3715 2.623718 CGCGAACTGCAAACGTGA 59.376 55.556 0.00 0.00 46.97 4.35
2424 3716 2.368131 TTCCGCGAACTGCAAACGTG 62.368 55.000 8.23 11.54 46.97 4.49
2425 3717 1.707239 TTTCCGCGAACTGCAAACGT 61.707 50.000 8.23 0.00 46.97 3.99
2426 3718 0.590230 TTTTCCGCGAACTGCAAACG 60.590 50.000 8.23 0.00 46.97 3.60
2427 3719 1.120437 CTTTTCCGCGAACTGCAAAC 58.880 50.000 8.23 0.00 46.97 2.93
2428 3720 0.593773 GCTTTTCCGCGAACTGCAAA 60.594 50.000 8.23 0.00 46.97 3.68
2429 3721 1.008995 GCTTTTCCGCGAACTGCAA 60.009 52.632 8.23 0.00 46.97 4.08
2430 3722 1.891919 AGCTTTTCCGCGAACTGCA 60.892 52.632 8.23 0.00 46.97 4.41
2431 3723 1.441016 CAGCTTTTCCGCGAACTGC 60.441 57.895 8.23 5.24 41.47 4.40
2432 3724 0.307760 AACAGCTTTTCCGCGAACTG 59.692 50.000 8.23 8.03 34.40 3.16
2433 3725 1.021968 AAACAGCTTTTCCGCGAACT 58.978 45.000 8.23 0.00 34.40 3.01
2434 3726 1.516864 CAAAACAGCTTTTCCGCGAAC 59.483 47.619 8.23 0.00 34.40 3.95
2435 3727 1.833860 CAAAACAGCTTTTCCGCGAA 58.166 45.000 8.23 0.00 34.40 4.70
2436 3728 0.593773 GCAAAACAGCTTTTCCGCGA 60.594 50.000 8.23 0.00 34.40 5.87
2437 3729 0.869454 TGCAAAACAGCTTTTCCGCG 60.869 50.000 0.00 0.00 34.99 6.46
2438 3730 0.854705 CTGCAAAACAGCTTTTCCGC 59.145 50.000 0.00 0.00 40.19 5.54
2454 3746 1.441682 GCTTTTCGCTGCAGACTGC 60.442 57.895 20.43 20.86 45.29 4.40
2455 3747 1.208614 GGCTTTTCGCTGCAGACTG 59.791 57.895 20.43 6.28 39.13 3.51
2456 3748 2.320587 CGGCTTTTCGCTGCAGACT 61.321 57.895 20.43 0.00 38.36 3.24
2457 3749 2.174349 CGGCTTTTCGCTGCAGAC 59.826 61.111 20.43 8.06 38.36 3.51
2475 3767 3.551496 TTTGCGGGGTCTGCCTCTG 62.551 63.158 0.00 0.00 31.37 3.35
2476 3768 3.249189 TTTGCGGGGTCTGCCTCT 61.249 61.111 0.00 0.00 31.37 3.69
2477 3769 2.747855 CTTTGCGGGGTCTGCCTC 60.748 66.667 0.00 0.00 34.45 4.70
2481 3773 4.697756 TCGGCTTTGCGGGGTCTG 62.698 66.667 0.00 0.00 0.00 3.51
2482 3774 4.699522 GTCGGCTTTGCGGGGTCT 62.700 66.667 0.00 0.00 0.00 3.85
2489 3781 4.179579 GATGCGGGTCGGCTTTGC 62.180 66.667 2.43 0.00 0.00 3.68
2490 3782 3.508840 GGATGCGGGTCGGCTTTG 61.509 66.667 2.43 0.00 0.00 2.77
2491 3783 3.717294 AGGATGCGGGTCGGCTTT 61.717 61.111 2.43 0.00 0.00 3.51
2492 3784 4.473520 CAGGATGCGGGTCGGCTT 62.474 66.667 2.43 0.00 0.00 4.35
2494 3786 4.778143 AACAGGATGCGGGTCGGC 62.778 66.667 0.00 0.00 42.53 5.54
2495 3787 0.391927 TAAAACAGGATGCGGGTCGG 60.392 55.000 0.00 0.00 42.53 4.79
2496 3788 0.725117 GTAAAACAGGATGCGGGTCG 59.275 55.000 0.00 0.00 42.53 4.79
2497 3789 0.725117 CGTAAAACAGGATGCGGGTC 59.275 55.000 0.00 0.00 42.53 4.46
2498 3790 0.675522 CCGTAAAACAGGATGCGGGT 60.676 55.000 0.00 0.00 42.53 5.28
2499 3791 2.094904 CCGTAAAACAGGATGCGGG 58.905 57.895 0.00 0.00 42.53 6.13
2500 3792 0.675522 ACCCGTAAAACAGGATGCGG 60.676 55.000 0.00 0.00 42.53 5.69
2501 3793 0.725117 GACCCGTAAAACAGGATGCG 59.275 55.000 0.00 0.00 42.53 4.73
2502 3794 0.725117 CGACCCGTAAAACAGGATGC 59.275 55.000 0.00 0.00 42.53 3.91
2503 3795 0.725117 GCGACCCGTAAAACAGGATG 59.275 55.000 0.00 0.00 46.00 3.51
2504 3796 0.611714 AGCGACCCGTAAAACAGGAT 59.388 50.000 0.00 0.00 0.00 3.24
2505 3797 0.393820 AAGCGACCCGTAAAACAGGA 59.606 50.000 0.00 0.00 0.00 3.86
2506 3798 1.069500 CAAAGCGACCCGTAAAACAGG 60.069 52.381 0.00 0.00 0.00 4.00
2507 3799 1.662026 GCAAAGCGACCCGTAAAACAG 60.662 52.381 0.00 0.00 0.00 3.16
2508 3800 0.308376 GCAAAGCGACCCGTAAAACA 59.692 50.000 0.00 0.00 0.00 2.83
2509 3801 3.081741 GCAAAGCGACCCGTAAAAC 57.918 52.632 0.00 0.00 0.00 2.43
2522 3814 3.058160 CAGGCAGACCCCGCAAAG 61.058 66.667 0.00 0.00 36.11 2.77
2523 3815 3.884774 ACAGGCAGACCCCGCAAA 61.885 61.111 0.00 0.00 36.11 3.68
2524 3816 4.641645 CACAGGCAGACCCCGCAA 62.642 66.667 0.00 0.00 36.11 4.85
2550 3842 2.284515 ATTTTGCGGGCTAGGGGGAG 62.285 60.000 0.00 0.00 0.00 4.30
2551 3843 2.313427 ATTTTGCGGGCTAGGGGGA 61.313 57.895 0.00 0.00 0.00 4.81
2552 3844 2.127232 CATTTTGCGGGCTAGGGGG 61.127 63.158 0.00 0.00 0.00 5.40
2553 3845 0.106918 TACATTTTGCGGGCTAGGGG 60.107 55.000 0.00 0.00 0.00 4.79
2554 3846 1.757682 TTACATTTTGCGGGCTAGGG 58.242 50.000 0.00 0.00 0.00 3.53
2555 3847 4.385358 AATTTACATTTTGCGGGCTAGG 57.615 40.909 0.00 0.00 0.00 3.02
2556 3848 4.032786 GCAAATTTACATTTTGCGGGCTAG 59.967 41.667 5.50 0.00 46.46 3.42
2557 3849 3.929610 GCAAATTTACATTTTGCGGGCTA 59.070 39.130 5.50 0.00 46.46 3.93
2558 3850 2.741517 GCAAATTTACATTTTGCGGGCT 59.258 40.909 5.50 0.00 46.46 5.19
2559 3851 3.116063 GCAAATTTACATTTTGCGGGC 57.884 42.857 5.50 0.00 46.46 6.13
2564 3856 8.683774 GCAAATTGAGTGCAAATTTACATTTTG 58.316 29.630 7.15 0.00 41.80 2.44
2565 3857 8.785468 GCAAATTGAGTGCAAATTTACATTTT 57.215 26.923 7.15 0.00 41.80 1.82
2577 3869 6.477355 CAAATTGAGGTGCAAATTGAGTGCA 61.477 40.000 0.00 0.00 45.83 4.57
2578 3870 2.798976 TTGAGGTGCAAATTGAGTGC 57.201 45.000 0.00 0.00 42.55 4.40
2579 3871 4.084223 GCAAATTGAGGTGCAAATTGAGTG 60.084 41.667 9.50 0.00 45.83 3.51
2580 3872 4.060205 GCAAATTGAGGTGCAAATTGAGT 58.940 39.130 9.50 0.00 45.83 3.41
2581 3873 4.059511 TGCAAATTGAGGTGCAAATTGAG 58.940 39.130 9.50 0.00 45.83 3.02
2582 3874 4.069300 TGCAAATTGAGGTGCAAATTGA 57.931 36.364 9.50 0.00 45.83 2.57
2589 3881 4.612033 GCAAAGAAATGCAAATTGAGGTGC 60.612 41.667 0.00 0.00 45.70 5.01
2590 3882 5.025986 GCAAAGAAATGCAAATTGAGGTG 57.974 39.130 0.00 0.00 45.70 4.00
2601 3893 5.207033 GTGGTTGAAAATGCAAAGAAATGC 58.793 37.500 0.00 0.00 46.58 3.56
2602 3894 6.360844 TGTGGTTGAAAATGCAAAGAAATG 57.639 33.333 0.00 0.00 0.00 2.32
2603 3895 7.419204 CAATGTGGTTGAAAATGCAAAGAAAT 58.581 30.769 0.00 0.00 40.37 2.17
2604 3896 6.183360 CCAATGTGGTTGAAAATGCAAAGAAA 60.183 34.615 0.00 0.00 40.37 2.52
2605 3897 5.296283 CCAATGTGGTTGAAAATGCAAAGAA 59.704 36.000 0.00 0.00 40.37 2.52
2606 3898 4.815308 CCAATGTGGTTGAAAATGCAAAGA 59.185 37.500 0.00 0.00 40.37 2.52
2607 3899 4.815308 TCCAATGTGGTTGAAAATGCAAAG 59.185 37.500 0.00 0.00 40.37 2.77
2608 3900 4.774124 TCCAATGTGGTTGAAAATGCAAA 58.226 34.783 0.00 0.00 40.37 3.68
2609 3901 4.412796 TCCAATGTGGTTGAAAATGCAA 57.587 36.364 0.00 0.00 40.37 4.08
2610 3902 4.620589 ATCCAATGTGGTTGAAAATGCA 57.379 36.364 0.00 0.00 40.37 3.96
2611 3903 5.477510 TGTATCCAATGTGGTTGAAAATGC 58.522 37.500 0.00 0.00 40.37 3.56
2612 3904 7.922278 CCTATGTATCCAATGTGGTTGAAAATG 59.078 37.037 0.00 0.00 40.37 2.32
2613 3905 7.838696 TCCTATGTATCCAATGTGGTTGAAAAT 59.161 33.333 0.00 0.00 40.37 1.82
2614 3906 7.122055 GTCCTATGTATCCAATGTGGTTGAAAA 59.878 37.037 0.00 0.00 40.37 2.29
2615 3907 6.601613 GTCCTATGTATCCAATGTGGTTGAAA 59.398 38.462 0.00 0.00 40.37 2.69
2616 3908 6.119536 GTCCTATGTATCCAATGTGGTTGAA 58.880 40.000 0.00 0.00 40.37 2.69
2617 3909 5.190726 TGTCCTATGTATCCAATGTGGTTGA 59.809 40.000 0.00 0.00 40.37 3.18
2618 3910 5.436175 TGTCCTATGTATCCAATGTGGTTG 58.564 41.667 0.00 0.00 39.03 3.77
2619 3911 5.708736 TGTCCTATGTATCCAATGTGGTT 57.291 39.130 0.00 0.00 39.03 3.67
2620 3912 5.369404 TGATGTCCTATGTATCCAATGTGGT 59.631 40.000 0.00 0.00 39.03 4.16
2621 3913 5.702670 GTGATGTCCTATGTATCCAATGTGG 59.297 44.000 0.00 0.00 39.43 4.17
2622 3914 5.702670 GGTGATGTCCTATGTATCCAATGTG 59.297 44.000 0.00 0.00 0.00 3.21
2623 3915 5.369404 TGGTGATGTCCTATGTATCCAATGT 59.631 40.000 0.00 0.00 0.00 2.71
2624 3916 5.868454 TGGTGATGTCCTATGTATCCAATG 58.132 41.667 0.00 0.00 0.00 2.82
2625 3917 6.514012 TTGGTGATGTCCTATGTATCCAAT 57.486 37.500 0.00 0.00 0.00 3.16
2626 3918 5.966853 TTGGTGATGTCCTATGTATCCAA 57.033 39.130 0.00 0.00 0.00 3.53
2627 3919 5.966853 TTTGGTGATGTCCTATGTATCCA 57.033 39.130 0.00 0.00 0.00 3.41
2628 3920 7.823745 AAATTTGGTGATGTCCTATGTATCC 57.176 36.000 0.00 0.00 0.00 2.59
2629 3921 9.520204 CAAAAATTTGGTGATGTCCTATGTATC 57.480 33.333 0.00 0.00 34.59 2.24
2630 3922 7.981225 GCAAAAATTTGGTGATGTCCTATGTAT 59.019 33.333 7.89 0.00 38.57 2.29
2631 3923 7.178274 AGCAAAAATTTGGTGATGTCCTATGTA 59.822 33.333 9.57 0.00 46.03 2.29
2632 3924 6.014327 AGCAAAAATTTGGTGATGTCCTATGT 60.014 34.615 9.57 0.00 46.03 2.29
2633 3925 6.400568 AGCAAAAATTTGGTGATGTCCTATG 58.599 36.000 9.57 0.00 46.03 2.23
2634 3926 6.610075 AGCAAAAATTTGGTGATGTCCTAT 57.390 33.333 9.57 0.00 46.03 2.57
2636 3928 4.961438 AGCAAAAATTTGGTGATGTCCT 57.039 36.364 9.57 0.00 46.03 3.85
2656 3948 4.853924 TTCTTTGGGCTTGCTTTTCTAG 57.146 40.909 0.00 0.00 0.00 2.43
2657 3949 5.105146 TGTTTTCTTTGGGCTTGCTTTTCTA 60.105 36.000 0.00 0.00 0.00 2.10
2658 3950 4.191544 GTTTTCTTTGGGCTTGCTTTTCT 58.808 39.130 0.00 0.00 0.00 2.52
2659 3951 3.938334 TGTTTTCTTTGGGCTTGCTTTTC 59.062 39.130 0.00 0.00 0.00 2.29
2660 3952 3.949132 TGTTTTCTTTGGGCTTGCTTTT 58.051 36.364 0.00 0.00 0.00 2.27
2661 3953 3.625649 TGTTTTCTTTGGGCTTGCTTT 57.374 38.095 0.00 0.00 0.00 3.51
2662 3954 3.197549 TCTTGTTTTCTTTGGGCTTGCTT 59.802 39.130 0.00 0.00 0.00 3.91
2663 3955 2.765699 TCTTGTTTTCTTTGGGCTTGCT 59.234 40.909 0.00 0.00 0.00 3.91
2664 3956 3.177997 TCTTGTTTTCTTTGGGCTTGC 57.822 42.857 0.00 0.00 0.00 4.01
2665 3957 3.871006 GGTTCTTGTTTTCTTTGGGCTTG 59.129 43.478 0.00 0.00 0.00 4.01
2666 3958 3.517500 TGGTTCTTGTTTTCTTTGGGCTT 59.482 39.130 0.00 0.00 0.00 4.35
2667 3959 3.103742 TGGTTCTTGTTTTCTTTGGGCT 58.896 40.909 0.00 0.00 0.00 5.19
2668 3960 3.194861 GTGGTTCTTGTTTTCTTTGGGC 58.805 45.455 0.00 0.00 0.00 5.36
2669 3961 4.464069 TGTGGTTCTTGTTTTCTTTGGG 57.536 40.909 0.00 0.00 0.00 4.12
2670 3962 5.478407 ACTTGTGGTTCTTGTTTTCTTTGG 58.522 37.500 0.00 0.00 0.00 3.28
2671 3963 7.254084 GCATACTTGTGGTTCTTGTTTTCTTTG 60.254 37.037 0.00 0.00 0.00 2.77
2672 3964 6.756542 GCATACTTGTGGTTCTTGTTTTCTTT 59.243 34.615 0.00 0.00 0.00 2.52
2673 3965 6.127479 TGCATACTTGTGGTTCTTGTTTTCTT 60.127 34.615 0.00 0.00 0.00 2.52
2674 3966 5.359576 TGCATACTTGTGGTTCTTGTTTTCT 59.640 36.000 0.00 0.00 0.00 2.52
2675 3967 5.587289 TGCATACTTGTGGTTCTTGTTTTC 58.413 37.500 0.00 0.00 0.00 2.29
2676 3968 5.590530 TGCATACTTGTGGTTCTTGTTTT 57.409 34.783 0.00 0.00 0.00 2.43
2677 3969 5.789643 ATGCATACTTGTGGTTCTTGTTT 57.210 34.783 0.00 0.00 0.00 2.83
2678 3970 5.789643 AATGCATACTTGTGGTTCTTGTT 57.210 34.783 0.00 0.00 0.00 2.83
2679 3971 5.789643 AAATGCATACTTGTGGTTCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
2680 3972 7.592938 TCTAAAATGCATACTTGTGGTTCTTG 58.407 34.615 0.00 0.00 0.00 3.02
2681 3973 7.759489 TCTAAAATGCATACTTGTGGTTCTT 57.241 32.000 0.00 0.00 0.00 2.52
2682 3974 7.665559 TCTTCTAAAATGCATACTTGTGGTTCT 59.334 33.333 0.00 0.00 0.00 3.01
2683 3975 7.816640 TCTTCTAAAATGCATACTTGTGGTTC 58.183 34.615 0.00 0.00 0.00 3.62
2684 3976 7.759489 TCTTCTAAAATGCATACTTGTGGTT 57.241 32.000 0.00 0.00 0.00 3.67
2685 3977 7.944729 ATCTTCTAAAATGCATACTTGTGGT 57.055 32.000 0.00 0.00 0.00 4.16
2686 3978 9.294030 GAAATCTTCTAAAATGCATACTTGTGG 57.706 33.333 0.00 0.00 0.00 4.17
2702 3994 9.601217 GCAGTTATGGAAGTTAGAAATCTTCTA 57.399 33.333 0.00 0.00 41.14 2.10
2703 3995 8.325046 AGCAGTTATGGAAGTTAGAAATCTTCT 58.675 33.333 0.00 0.00 43.72 2.85
2704 3996 8.499403 AGCAGTTATGGAAGTTAGAAATCTTC 57.501 34.615 0.00 0.00 39.21 2.87
2705 3997 7.554476 GGAGCAGTTATGGAAGTTAGAAATCTT 59.446 37.037 0.00 0.00 0.00 2.40
2706 3998 7.051000 GGAGCAGTTATGGAAGTTAGAAATCT 58.949 38.462 0.00 0.00 0.00 2.40
2707 3999 6.261158 GGGAGCAGTTATGGAAGTTAGAAATC 59.739 42.308 0.00 0.00 0.00 2.17
2708 4000 6.122964 GGGAGCAGTTATGGAAGTTAGAAAT 58.877 40.000 0.00 0.00 0.00 2.17
2709 4001 5.013704 TGGGAGCAGTTATGGAAGTTAGAAA 59.986 40.000 0.00 0.00 0.00 2.52
2710 4002 4.534500 TGGGAGCAGTTATGGAAGTTAGAA 59.466 41.667 0.00 0.00 0.00 2.10
2711 4003 4.101114 TGGGAGCAGTTATGGAAGTTAGA 58.899 43.478 0.00 0.00 0.00 2.10
2712 4004 4.487714 TGGGAGCAGTTATGGAAGTTAG 57.512 45.455 0.00 0.00 0.00 2.34
2713 4005 4.534500 TCTTGGGAGCAGTTATGGAAGTTA 59.466 41.667 0.00 0.00 0.00 2.24
2714 4006 3.330701 TCTTGGGAGCAGTTATGGAAGTT 59.669 43.478 0.00 0.00 0.00 2.66
2715 4007 2.912956 TCTTGGGAGCAGTTATGGAAGT 59.087 45.455 0.00 0.00 0.00 3.01
2716 4008 3.054802 ACTCTTGGGAGCAGTTATGGAAG 60.055 47.826 0.00 0.00 42.98 3.46
2717 4009 2.912956 ACTCTTGGGAGCAGTTATGGAA 59.087 45.455 0.00 0.00 42.98 3.53
2718 4010 2.551270 ACTCTTGGGAGCAGTTATGGA 58.449 47.619 0.00 0.00 42.98 3.41
2719 4011 3.012518 CAACTCTTGGGAGCAGTTATGG 58.987 50.000 0.00 0.00 42.98 2.74
2720 4012 3.942829 TCAACTCTTGGGAGCAGTTATG 58.057 45.455 0.00 0.00 42.98 1.90
2721 4013 4.583871 CTTCAACTCTTGGGAGCAGTTAT 58.416 43.478 0.00 0.00 42.98 1.89
2722 4014 3.807209 GCTTCAACTCTTGGGAGCAGTTA 60.807 47.826 0.00 0.00 42.98 2.24
2723 4015 2.856222 CTTCAACTCTTGGGAGCAGTT 58.144 47.619 0.00 0.00 42.98 3.16
2724 4016 1.544314 GCTTCAACTCTTGGGAGCAGT 60.544 52.381 0.00 0.00 42.98 4.40
2725 4017 1.163554 GCTTCAACTCTTGGGAGCAG 58.836 55.000 0.00 0.00 42.98 4.24
2726 4018 0.473755 TGCTTCAACTCTTGGGAGCA 59.526 50.000 8.79 8.79 43.07 4.26
2727 4019 1.609208 TTGCTTCAACTCTTGGGAGC 58.391 50.000 0.00 0.00 42.98 4.70
2728 4020 5.435291 AGATATTGCTTCAACTCTTGGGAG 58.565 41.667 0.00 0.00 44.62 4.30
2729 4021 5.441718 AGATATTGCTTCAACTCTTGGGA 57.558 39.130 0.00 0.00 0.00 4.37
2730 4022 5.416952 ACAAGATATTGCTTCAACTCTTGGG 59.583 40.000 23.11 10.74 43.28 4.12
2731 4023 6.404074 GGACAAGATATTGCTTCAACTCTTGG 60.404 42.308 23.11 13.54 43.28 3.61
2732 4024 6.149973 TGGACAAGATATTGCTTCAACTCTTG 59.850 38.462 20.44 20.44 43.85 3.02
2733 4025 6.240894 TGGACAAGATATTGCTTCAACTCTT 58.759 36.000 0.00 0.00 32.54 2.85
2734 4026 5.809001 TGGACAAGATATTGCTTCAACTCT 58.191 37.500 0.00 0.00 0.00 3.24
2735 4027 6.493116 CATGGACAAGATATTGCTTCAACTC 58.507 40.000 0.00 0.00 0.00 3.01
2736 4028 5.163581 GCATGGACAAGATATTGCTTCAACT 60.164 40.000 0.00 0.00 0.00 3.16
2737 4029 5.039333 GCATGGACAAGATATTGCTTCAAC 58.961 41.667 0.00 0.00 0.00 3.18
2738 4030 4.705991 TGCATGGACAAGATATTGCTTCAA 59.294 37.500 0.00 0.00 0.00 2.69
2739 4031 4.096833 GTGCATGGACAAGATATTGCTTCA 59.903 41.667 13.07 0.00 0.00 3.02
2740 4032 4.337555 AGTGCATGGACAAGATATTGCTTC 59.662 41.667 20.21 0.00 0.00 3.86
2741 4033 4.275810 AGTGCATGGACAAGATATTGCTT 58.724 39.130 20.21 0.00 0.00 3.91
2742 4034 3.881688 GAGTGCATGGACAAGATATTGCT 59.118 43.478 20.21 0.00 0.00 3.91
2743 4035 3.628942 TGAGTGCATGGACAAGATATTGC 59.371 43.478 20.21 0.00 0.00 3.56
2744 4036 6.206498 CAATGAGTGCATGGACAAGATATTG 58.794 40.000 20.21 15.82 34.26 1.90
2745 4037 6.387041 CAATGAGTGCATGGACAAGATATT 57.613 37.500 20.21 8.95 34.26 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.