Multiple sequence alignment - TraesCS5B01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G420800 chr5B 100.000 8176 0 0 1 8176 596500867 596492692 0.000000e+00 15099.0
1 TraesCS5B01G420800 chr5B 91.896 1419 77 15 1516 2909 596461572 596460167 0.000000e+00 1949.0
2 TraesCS5B01G420800 chr5B 91.953 1193 84 10 1766 2957 596542195 596541014 0.000000e+00 1661.0
3 TraesCS5B01G420800 chr5B 93.635 1084 61 5 1870 2952 499081898 499082974 0.000000e+00 1613.0
4 TraesCS5B01G420800 chr5B 96.591 792 22 3 3056 3845 596495075 596494287 0.000000e+00 1308.0
5 TraesCS5B01G420800 chr5B 96.591 792 22 3 5793 6581 596497812 596497023 0.000000e+00 1308.0
6 TraesCS5B01G420800 chr5B 88.976 762 70 8 6590 7345 596460129 596459376 0.000000e+00 929.0
7 TraesCS5B01G420800 chr5B 85.209 764 69 24 7289 8026 596459021 596458276 0.000000e+00 745.0
8 TraesCS5B01G420800 chr5B 88.730 488 36 8 1072 1549 596543101 596542623 5.500000e-161 579.0
9 TraesCS5B01G420800 chr5B 90.865 416 29 7 984 1396 499080534 499080943 4.310000e-152 549.0
10 TraesCS5B01G420800 chr5B 82.160 639 60 18 334 932 596513954 596513330 4.410000e-137 499.0
11 TraesCS5B01G420800 chr5B 78.358 804 79 39 210 965 467025663 467024907 4.530000e-117 433.0
12 TraesCS5B01G420800 chr5B 93.776 241 15 0 6634 6874 499083731 499083971 6.030000e-96 363.0
13 TraesCS5B01G420800 chr5B 93.617 188 11 1 6655 6841 596697858 596697671 6.250000e-71 279.0
14 TraesCS5B01G420800 chr5B 88.261 230 14 3 1620 1836 499081570 499081799 6.290000e-66 263.0
15 TraesCS5B01G420800 chr5B 89.423 208 21 1 1395 1602 499081061 499081267 2.260000e-65 261.0
16 TraesCS5B01G420800 chr5B 89.172 157 15 2 1255 1410 596461730 596461575 2.330000e-45 195.0
17 TraesCS5B01G420800 chr5B 89.683 126 10 1 2931 3056 596460174 596460052 3.050000e-34 158.0
18 TraesCS5B01G420800 chr5B 100.000 78 0 0 2979 3056 596494278 596494201 2.380000e-30 145.0
19 TraesCS5B01G420800 chr5B 100.000 78 0 0 6590 6667 596497889 596497812 2.380000e-30 145.0
20 TraesCS5B01G420800 chr5B 89.130 92 8 1 8076 8167 596458164 596458075 6.710000e-21 113.0
21 TraesCS5B01G420800 chr5B 98.333 60 1 0 2969 3028 499083064 499083123 1.120000e-18 106.0
22 TraesCS5B01G420800 chr5B 100.000 50 0 0 6590 6639 499083074 499083123 8.740000e-15 93.5
23 TraesCS5B01G420800 chr5B 100.000 35 0 0 2975 3009 596541013 596540979 1.900000e-06 65.8
24 TraesCS5B01G420800 chr5B 100.000 31 0 0 6590 6620 596541009 596540979 3.190000e-04 58.4
25 TraesCS5B01G420800 chr7A 93.032 3545 197 24 3056 6577 383595059 383598576 0.000000e+00 5132.0
26 TraesCS5B01G420800 chr7A 91.110 2216 173 8 3610 5802 304068185 304070399 0.000000e+00 2979.0
27 TraesCS5B01G420800 chr7A 95.012 802 31 5 3056 3854 383597794 383598589 0.000000e+00 1251.0
28 TraesCS5B01G420800 chr7A 95.178 788 33 4 5791 6576 383595057 383595841 0.000000e+00 1240.0
29 TraesCS5B01G420800 chr7A 82.738 672 60 19 331 963 109342918 109343572 1.550000e-151 547.0
30 TraesCS5B01G420800 chr3B 92.950 3319 139 60 3055 6318 323387689 323384411 0.000000e+00 4745.0
31 TraesCS5B01G420800 chr3B 95.433 2540 80 19 3803 6313 389124938 389122406 0.000000e+00 4015.0
32 TraesCS5B01G420800 chr3B 83.292 401 35 11 1987 2380 592863620 592863245 2.830000e-89 340.0
33 TraesCS5B01G420800 chr3A 92.207 2900 182 19 3065 5942 386668129 386665252 0.000000e+00 4063.0
34 TraesCS5B01G420800 chr3A 88.281 2560 246 29 3790 6316 307923008 307925546 0.000000e+00 3016.0
35 TraesCS5B01G420800 chr3A 90.876 2214 170 17 3616 5802 437855579 437853371 0.000000e+00 2940.0
36 TraesCS5B01G420800 chr1B 93.798 2354 114 13 3056 5382 137240596 137242944 0.000000e+00 3509.0
37 TraesCS5B01G420800 chr1B 93.628 2354 118 13 3056 5382 137238009 137240357 0.000000e+00 3487.0
38 TraesCS5B01G420800 chr1B 90.913 2212 171 15 3616 5802 275247589 275245383 0.000000e+00 2944.0
39 TraesCS5B01G420800 chr1B 95.010 1042 42 8 5543 6577 137240346 137241384 0.000000e+00 1628.0
40 TraesCS5B01G420800 chr1B 95.010 1042 41 8 5543 6577 137242933 137243970 0.000000e+00 1626.0
41 TraesCS5B01G420800 chr1B 95.161 806 27 7 3056 3854 137243183 137243983 0.000000e+00 1262.0
42 TraesCS5B01G420800 chr4A 94.485 2212 84 15 3796 5984 702944836 702942640 0.000000e+00 3374.0
43 TraesCS5B01G420800 chr4A 94.392 2211 88 13 3796 5984 702939351 702937155 0.000000e+00 3363.0
44 TraesCS5B01G420800 chr4A 93.920 2204 97 17 3804 5984 702942085 702939896 0.000000e+00 3293.0
45 TraesCS5B01G420800 chr3D 91.867 2324 156 16 3794 6086 28712713 28715034 0.000000e+00 3214.0
46 TraesCS5B01G420800 chr3D 86.744 347 24 4 2078 2419 451229343 451229014 4.660000e-97 366.0
47 TraesCS5B01G420800 chr6B 91.700 2217 154 13 3610 5802 172244505 172246715 0.000000e+00 3048.0
48 TraesCS5B01G420800 chr1A 95.691 1578 63 4 5003 6578 459485910 459487484 0.000000e+00 2532.0
49 TraesCS5B01G420800 chr1A 93.759 1362 74 6 3054 4412 459484545 459485898 0.000000e+00 2034.0
50 TraesCS5B01G420800 chr1A 96.010 802 25 4 3056 3854 459486699 459487496 0.000000e+00 1297.0
51 TraesCS5B01G420800 chr1A 94.924 788 36 3 5793 6578 459484547 459485332 0.000000e+00 1230.0
52 TraesCS5B01G420800 chr1A 83.562 292 42 4 534 824 509019342 509019056 1.350000e-67 268.0
53 TraesCS5B01G420800 chr5D 92.598 1351 76 12 1620 2952 414024065 414025409 0.000000e+00 1919.0
54 TraesCS5B01G420800 chr5D 87.821 780 65 18 6590 7366 414025508 414026260 0.000000e+00 887.0
55 TraesCS5B01G420800 chr5D 90.000 610 47 6 6660 7268 484699049 484699645 0.000000e+00 776.0
56 TraesCS5B01G420800 chr5D 88.868 539 36 9 984 1516 414023508 414024028 6.920000e-180 641.0
57 TraesCS5B01G420800 chr5D 81.415 834 101 39 7221 8026 484813136 484813943 4.160000e-177 632.0
58 TraesCS5B01G420800 chr5D 82.147 773 76 27 210 932 484667817 484668577 2.520000e-169 606.0
59 TraesCS5B01G420800 chr5D 88.571 455 39 9 6815 7268 484658678 484659120 2.600000e-149 540.0
60 TraesCS5B01G420800 chr5D 97.701 87 2 0 2970 3056 414025499 414025585 5.110000e-32 150.0
61 TraesCS5B01G420800 chr5D 93.750 80 4 1 6677 6755 484645280 484645359 1.440000e-22 119.0
62 TraesCS5B01G420800 chr5A 91.849 1141 63 10 1932 3056 526577480 526578606 0.000000e+00 1565.0
63 TraesCS5B01G420800 chr5A 90.877 559 38 7 966 1516 526576465 526577018 0.000000e+00 737.0
64 TraesCS5B01G420800 chr5A 86.601 612 53 10 6660 7268 606175798 606176383 0.000000e+00 649.0
65 TraesCS5B01G420800 chr5A 87.045 440 50 4 7221 7656 606249193 606249629 2.650000e-134 490.0
66 TraesCS5B01G420800 chr5A 92.174 345 27 0 6590 6934 526578529 526578873 9.540000e-134 488.0
67 TraesCS5B01G420800 chr5A 85.874 446 36 15 526 965 491589898 491589474 4.500000e-122 449.0
68 TraesCS5B01G420800 chr5A 89.109 303 17 10 640 933 606207163 606207458 6.030000e-96 363.0
69 TraesCS5B01G420800 chr5A 75.273 275 40 16 7765 8026 606250129 606250388 1.120000e-18 106.0
70 TraesCS5B01G420800 chr2B 81.774 823 65 36 223 970 552434689 552433877 1.950000e-170 610.0
71 TraesCS5B01G420800 chr2B 81.481 810 67 35 223 965 97940707 97941500 9.140000e-164 588.0
72 TraesCS5B01G420800 chr2D 81.415 834 58 44 223 969 473101293 473100470 7.070000e-165 592.0
73 TraesCS5B01G420800 chr2D 82.853 659 53 24 359 973 62386533 62387175 3.360000e-148 536.0
74 TraesCS5B01G420800 chr2D 83.129 326 30 9 223 523 62386256 62385931 2.910000e-69 274.0
75 TraesCS5B01G420800 chr7D 82.590 695 61 31 320 970 104890645 104891323 7.170000e-155 558.0
76 TraesCS5B01G420800 chr2A 81.402 328 31 11 223 523 614585115 614584791 2.950000e-59 241.0
77 TraesCS5B01G420800 chr7B 86.432 199 20 5 320 516 63556821 63557014 2.310000e-50 211.0
78 TraesCS5B01G420800 chr6A 78.710 310 41 17 215 516 584687717 584687425 5.040000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G420800 chr5B 596492692 596500867 8175 True 15099.000000 15099 100.000000 1 8176 1 chr5B.!!$R2 8175
1 TraesCS5B01G420800 chr5B 596494201 596497889 3688 True 726.500000 1308 98.295500 2979 6667 4 chr5B.!!$R6 3688
2 TraesCS5B01G420800 chr5B 596458075 596461730 3655 True 681.500000 1949 89.011000 1255 8167 6 chr5B.!!$R5 6912
3 TraesCS5B01G420800 chr5B 596540979 596543101 2122 True 591.050000 1661 95.170750 1072 6620 4 chr5B.!!$R7 5548
4 TraesCS5B01G420800 chr5B 596513330 596513954 624 True 499.000000 499 82.160000 334 932 1 chr5B.!!$R3 598
5 TraesCS5B01G420800 chr5B 499080534 499083971 3437 False 464.071429 1613 93.470429 984 6874 7 chr5B.!!$F1 5890
6 TraesCS5B01G420800 chr5B 467024907 467025663 756 True 433.000000 433 78.358000 210 965 1 chr5B.!!$R1 755
7 TraesCS5B01G420800 chr7A 304068185 304070399 2214 False 2979.000000 2979 91.110000 3610 5802 1 chr7A.!!$F2 2192
8 TraesCS5B01G420800 chr7A 383595057 383598589 3532 False 2541.000000 5132 94.407333 3056 6577 3 chr7A.!!$F3 3521
9 TraesCS5B01G420800 chr7A 109342918 109343572 654 False 547.000000 547 82.738000 331 963 1 chr7A.!!$F1 632
10 TraesCS5B01G420800 chr3B 323384411 323387689 3278 True 4745.000000 4745 92.950000 3055 6318 1 chr3B.!!$R1 3263
11 TraesCS5B01G420800 chr3B 389122406 389124938 2532 True 4015.000000 4015 95.433000 3803 6313 1 chr3B.!!$R2 2510
12 TraesCS5B01G420800 chr3A 386665252 386668129 2877 True 4063.000000 4063 92.207000 3065 5942 1 chr3A.!!$R1 2877
13 TraesCS5B01G420800 chr3A 307923008 307925546 2538 False 3016.000000 3016 88.281000 3790 6316 1 chr3A.!!$F1 2526
14 TraesCS5B01G420800 chr3A 437853371 437855579 2208 True 2940.000000 2940 90.876000 3616 5802 1 chr3A.!!$R2 2186
15 TraesCS5B01G420800 chr1B 275245383 275247589 2206 True 2944.000000 2944 90.913000 3616 5802 1 chr1B.!!$R1 2186
16 TraesCS5B01G420800 chr1B 137238009 137243983 5974 False 2302.400000 3509 94.521400 3056 6577 5 chr1B.!!$F1 3521
17 TraesCS5B01G420800 chr4A 702937155 702944836 7681 True 3343.333333 3374 94.265667 3796 5984 3 chr4A.!!$R1 2188
18 TraesCS5B01G420800 chr3D 28712713 28715034 2321 False 3214.000000 3214 91.867000 3794 6086 1 chr3D.!!$F1 2292
19 TraesCS5B01G420800 chr6B 172244505 172246715 2210 False 3048.000000 3048 91.700000 3610 5802 1 chr6B.!!$F1 2192
20 TraesCS5B01G420800 chr1A 459484545 459487496 2951 False 1773.250000 2532 95.096000 3054 6578 4 chr1A.!!$F1 3524
21 TraesCS5B01G420800 chr5D 414023508 414026260 2752 False 899.250000 1919 91.747000 984 7366 4 chr5D.!!$F6 6382
22 TraesCS5B01G420800 chr5D 484699049 484699645 596 False 776.000000 776 90.000000 6660 7268 1 chr5D.!!$F4 608
23 TraesCS5B01G420800 chr5D 484813136 484813943 807 False 632.000000 632 81.415000 7221 8026 1 chr5D.!!$F5 805
24 TraesCS5B01G420800 chr5D 484667817 484668577 760 False 606.000000 606 82.147000 210 932 1 chr5D.!!$F3 722
25 TraesCS5B01G420800 chr5A 526576465 526578873 2408 False 930.000000 1565 91.633333 966 6934 3 chr5A.!!$F3 5968
26 TraesCS5B01G420800 chr5A 606175798 606176383 585 False 649.000000 649 86.601000 6660 7268 1 chr5A.!!$F1 608
27 TraesCS5B01G420800 chr5A 606249193 606250388 1195 False 298.000000 490 81.159000 7221 8026 2 chr5A.!!$F4 805
28 TraesCS5B01G420800 chr2B 552433877 552434689 812 True 610.000000 610 81.774000 223 970 1 chr2B.!!$R1 747
29 TraesCS5B01G420800 chr2B 97940707 97941500 793 False 588.000000 588 81.481000 223 965 1 chr2B.!!$F1 742
30 TraesCS5B01G420800 chr2D 473100470 473101293 823 True 592.000000 592 81.415000 223 969 1 chr2D.!!$R2 746
31 TraesCS5B01G420800 chr2D 62386533 62387175 642 False 536.000000 536 82.853000 359 973 1 chr2D.!!$F1 614
32 TraesCS5B01G420800 chr7D 104890645 104891323 678 False 558.000000 558 82.590000 320 970 1 chr7D.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.034186 CAGTTGGGCTGGGCTCATTA 60.034 55.000 0.0 0.0 39.47 1.90 F
132 133 0.035056 CCATCCTTCGCTTGACCCTT 60.035 55.000 0.0 0.0 0.00 3.95 F
134 135 0.108138 ATCCTTCGCTTGACCCTTCG 60.108 55.000 0.0 0.0 0.00 3.79 F
615 765 0.328926 TCCATGTGGCATCTTGAGCA 59.671 50.000 0.0 0.0 34.44 4.26 F
1608 1905 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.0 0.0 0.00 4.57 F
2757 3628 1.348036 ACTTGCAGGTCCTTGGTAGTC 59.652 52.381 0.0 0.0 0.00 2.59 F
2797 3668 2.106566 TGGGAAGAAAAAGCTTGTGCA 58.893 42.857 0.0 0.0 42.74 4.57 F
2955 3826 2.765699 TGGAAAACTCTTTTGCCAAGCT 59.234 40.909 0.0 0.0 46.25 3.74 F
6954 16314 1.267732 CGATTTTCGAGAGCCATGTGC 60.268 52.381 0.0 0.0 43.74 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1333 0.176680 GCATGACATCCGTCCTGACT 59.823 55.000 0.00 0.00 41.85 3.41 R
1585 1882 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66 R
1614 1911 1.272784 TATGAGTAATTCCGCGCGCG 61.273 55.000 43.73 43.73 39.44 6.86 R
2214 3069 2.028748 ACATTTCATGAAACTGCTGCCC 60.029 45.455 22.71 0.00 32.51 5.36 R
2961 3832 3.678056 TGCTTGTCTAGTACCCAACTG 57.322 47.619 0.00 0.00 39.39 3.16 R
6794 16149 9.676861 CTATCATAAATAGGAAATCCAGATGCA 57.323 33.333 1.67 0.00 38.89 3.96 R
6810 16166 9.797642 TGAACCATGTAGATTGCTATCATAAAT 57.202 29.630 10.78 0.00 32.95 1.40 R
6958 16318 0.542467 AAAGTGTCCATGGGCATGCA 60.542 50.000 24.46 6.07 37.49 3.96 R
7891 18168 0.451783 CGGGTGCCTCAAAACTATGC 59.548 55.000 0.00 0.00 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.655211 AGCCTCCAGCCAGTTGGG 61.655 66.667 0.33 0.00 45.47 4.12
27 28 2.357836 CAGTTGGGCTGGGCTCAT 59.642 61.111 0.00 0.00 39.47 2.90
28 29 1.304713 CAGTTGGGCTGGGCTCATT 60.305 57.895 0.00 0.00 39.47 2.57
29 30 0.034186 CAGTTGGGCTGGGCTCATTA 60.034 55.000 0.00 0.00 39.47 1.90
30 31 0.257039 AGTTGGGCTGGGCTCATTAG 59.743 55.000 0.00 0.00 39.47 1.73
40 41 1.011794 GCTCATTAGCGCTCGTTGC 60.012 57.895 16.34 10.01 39.39 4.17
41 42 1.638467 CTCATTAGCGCTCGTTGCC 59.362 57.895 16.34 0.00 38.78 4.52
42 43 2.082437 CTCATTAGCGCTCGTTGCCG 62.082 60.000 16.34 1.31 38.78 5.69
43 44 2.890474 ATTAGCGCTCGTTGCCGG 60.890 61.111 16.34 0.00 38.78 6.13
44 45 3.365291 ATTAGCGCTCGTTGCCGGA 62.365 57.895 16.34 0.00 38.78 5.14
45 46 3.982372 TTAGCGCTCGTTGCCGGAG 62.982 63.158 16.34 0.00 38.78 4.63
62 63 1.685820 AGGCCAGCCTCACTTAACC 59.314 57.895 5.04 0.00 44.43 2.85
63 64 1.378646 GGCCAGCCTCACTTAACCC 60.379 63.158 0.00 0.00 0.00 4.11
64 65 1.378762 GCCAGCCTCACTTAACCCA 59.621 57.895 0.00 0.00 0.00 4.51
65 66 0.678048 GCCAGCCTCACTTAACCCAG 60.678 60.000 0.00 0.00 0.00 4.45
66 67 0.678048 CCAGCCTCACTTAACCCAGC 60.678 60.000 0.00 0.00 0.00 4.85
67 68 0.678048 CAGCCTCACTTAACCCAGCC 60.678 60.000 0.00 0.00 0.00 4.85
68 69 1.378646 GCCTCACTTAACCCAGCCC 60.379 63.158 0.00 0.00 0.00 5.19
69 70 2.074967 CCTCACTTAACCCAGCCCA 58.925 57.895 0.00 0.00 0.00 5.36
70 71 0.625849 CCTCACTTAACCCAGCCCAT 59.374 55.000 0.00 0.00 0.00 4.00
71 72 1.843851 CCTCACTTAACCCAGCCCATA 59.156 52.381 0.00 0.00 0.00 2.74
72 73 2.443255 CCTCACTTAACCCAGCCCATAT 59.557 50.000 0.00 0.00 0.00 1.78
73 74 3.117512 CCTCACTTAACCCAGCCCATATT 60.118 47.826 0.00 0.00 0.00 1.28
74 75 4.536765 CTCACTTAACCCAGCCCATATTT 58.463 43.478 0.00 0.00 0.00 1.40
75 76 4.532834 TCACTTAACCCAGCCCATATTTC 58.467 43.478 0.00 0.00 0.00 2.17
76 77 4.229582 TCACTTAACCCAGCCCATATTTCT 59.770 41.667 0.00 0.00 0.00 2.52
77 78 4.956075 CACTTAACCCAGCCCATATTTCTT 59.044 41.667 0.00 0.00 0.00 2.52
78 79 5.067805 CACTTAACCCAGCCCATATTTCTTC 59.932 44.000 0.00 0.00 0.00 2.87
79 80 5.044105 ACTTAACCCAGCCCATATTTCTTCT 60.044 40.000 0.00 0.00 0.00 2.85
80 81 6.159751 ACTTAACCCAGCCCATATTTCTTCTA 59.840 38.462 0.00 0.00 0.00 2.10
81 82 5.466127 AACCCAGCCCATATTTCTTCTAA 57.534 39.130 0.00 0.00 0.00 2.10
82 83 5.466127 ACCCAGCCCATATTTCTTCTAAA 57.534 39.130 0.00 0.00 0.00 1.85
83 84 5.837829 ACCCAGCCCATATTTCTTCTAAAA 58.162 37.500 0.00 0.00 0.00 1.52
84 85 6.260663 ACCCAGCCCATATTTCTTCTAAAAA 58.739 36.000 0.00 0.00 0.00 1.94
112 113 6.918892 AAAACAAAAACATCTTAACCCAGC 57.081 33.333 0.00 0.00 0.00 4.85
113 114 4.600692 ACAAAAACATCTTAACCCAGCC 57.399 40.909 0.00 0.00 0.00 4.85
114 115 3.323691 ACAAAAACATCTTAACCCAGCCC 59.676 43.478 0.00 0.00 0.00 5.19
115 116 2.990740 AAACATCTTAACCCAGCCCA 57.009 45.000 0.00 0.00 0.00 5.36
116 117 3.473113 AAACATCTTAACCCAGCCCAT 57.527 42.857 0.00 0.00 0.00 4.00
117 118 2.736670 ACATCTTAACCCAGCCCATC 57.263 50.000 0.00 0.00 0.00 3.51
118 119 1.215423 ACATCTTAACCCAGCCCATCC 59.785 52.381 0.00 0.00 0.00 3.51
119 120 1.496429 CATCTTAACCCAGCCCATCCT 59.504 52.381 0.00 0.00 0.00 3.24
120 121 1.681229 TCTTAACCCAGCCCATCCTT 58.319 50.000 0.00 0.00 0.00 3.36
121 122 1.564348 TCTTAACCCAGCCCATCCTTC 59.436 52.381 0.00 0.00 0.00 3.46
122 123 0.254747 TTAACCCAGCCCATCCTTCG 59.745 55.000 0.00 0.00 0.00 3.79
123 124 2.265467 TAACCCAGCCCATCCTTCGC 62.265 60.000 0.00 0.00 0.00 4.70
124 125 3.801997 CCCAGCCCATCCTTCGCT 61.802 66.667 0.00 0.00 0.00 4.93
125 126 2.273449 CCAGCCCATCCTTCGCTT 59.727 61.111 0.00 0.00 0.00 4.68
126 127 2.117156 CCAGCCCATCCTTCGCTTG 61.117 63.158 0.00 0.00 0.00 4.01
127 128 1.078214 CAGCCCATCCTTCGCTTGA 60.078 57.895 0.00 0.00 0.00 3.02
128 129 1.078143 AGCCCATCCTTCGCTTGAC 60.078 57.895 0.00 0.00 0.00 3.18
129 130 2.115291 GCCCATCCTTCGCTTGACC 61.115 63.158 0.00 0.00 0.00 4.02
130 131 1.452108 CCCATCCTTCGCTTGACCC 60.452 63.158 0.00 0.00 0.00 4.46
131 132 1.604378 CCATCCTTCGCTTGACCCT 59.396 57.895 0.00 0.00 0.00 4.34
132 133 0.035056 CCATCCTTCGCTTGACCCTT 60.035 55.000 0.00 0.00 0.00 3.95
133 134 1.373570 CATCCTTCGCTTGACCCTTC 58.626 55.000 0.00 0.00 0.00 3.46
134 135 0.108138 ATCCTTCGCTTGACCCTTCG 60.108 55.000 0.00 0.00 0.00 3.79
135 136 2.391389 CCTTCGCTTGACCCTTCGC 61.391 63.158 0.00 0.00 0.00 4.70
136 137 2.358247 TTCGCTTGACCCTTCGCC 60.358 61.111 0.00 0.00 0.00 5.54
137 138 4.735132 TCGCTTGACCCTTCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
139 140 3.119096 GCTTGACCCTTCGCCGTC 61.119 66.667 0.00 0.00 0.00 4.79
140 141 2.809601 CTTGACCCTTCGCCGTCG 60.810 66.667 0.00 0.00 0.00 5.12
141 142 4.367023 TTGACCCTTCGCCGTCGG 62.367 66.667 6.99 6.99 36.13 4.79
168 169 4.075793 AGCTCGCCCCTCCACCTA 62.076 66.667 0.00 0.00 0.00 3.08
169 170 3.851128 GCTCGCCCCTCCACCTAC 61.851 72.222 0.00 0.00 0.00 3.18
170 171 3.155167 CTCGCCCCTCCACCTACC 61.155 72.222 0.00 0.00 0.00 3.18
171 172 4.791069 TCGCCCCTCCACCTACCC 62.791 72.222 0.00 0.00 0.00 3.69
172 173 4.798682 CGCCCCTCCACCTACCCT 62.799 72.222 0.00 0.00 0.00 4.34
173 174 2.286197 GCCCCTCCACCTACCCTT 60.286 66.667 0.00 0.00 0.00 3.95
174 175 2.376165 GCCCCTCCACCTACCCTTC 61.376 68.421 0.00 0.00 0.00 3.46
175 176 1.693103 CCCCTCCACCTACCCTTCC 60.693 68.421 0.00 0.00 0.00 3.46
176 177 2.064581 CCCTCCACCTACCCTTCCG 61.065 68.421 0.00 0.00 0.00 4.30
177 178 2.064581 CCTCCACCTACCCTTCCGG 61.065 68.421 0.00 0.00 37.81 5.14
178 179 2.686106 TCCACCTACCCTTCCGGC 60.686 66.667 0.00 0.00 33.26 6.13
179 180 4.157120 CCACCTACCCTTCCGGCG 62.157 72.222 0.00 0.00 33.26 6.46
180 181 4.832608 CACCTACCCTTCCGGCGC 62.833 72.222 0.00 0.00 33.26 6.53
242 244 4.301027 GCCCGATTCCCTCGCGAT 62.301 66.667 10.36 0.00 46.25 4.58
277 292 2.125106 GATCTCGCCGCCTGGTTT 60.125 61.111 0.00 0.00 37.67 3.27
291 314 3.343421 GTTTCGTGCCTCGCCGTT 61.343 61.111 0.00 0.00 39.67 4.44
343 427 2.807045 CACTCAGACCGCACTCGC 60.807 66.667 0.00 0.00 0.00 5.03
344 428 3.295273 ACTCAGACCGCACTCGCA 61.295 61.111 0.00 0.00 38.40 5.10
345 429 2.505777 CTCAGACCGCACTCGCAG 60.506 66.667 0.00 0.00 38.40 5.18
346 430 3.274455 CTCAGACCGCACTCGCAGT 62.274 63.158 0.00 0.00 38.40 4.40
349 433 2.875485 GACCGCACTCGCAGTCTA 59.125 61.111 0.00 0.00 41.51 2.59
350 434 1.514443 GACCGCACTCGCAGTCTAC 60.514 63.158 0.00 0.00 41.51 2.59
351 435 2.577112 CCGCACTCGCAGTCTACG 60.577 66.667 0.00 0.00 38.40 3.51
352 436 3.241059 CGCACTCGCAGTCTACGC 61.241 66.667 0.00 0.00 38.40 4.42
353 437 2.881352 GCACTCGCAGTCTACGCC 60.881 66.667 0.00 0.00 38.36 5.68
354 438 2.202623 CACTCGCAGTCTACGCCC 60.203 66.667 0.00 0.00 0.00 6.13
355 439 3.812019 ACTCGCAGTCTACGCCCG 61.812 66.667 0.00 0.00 0.00 6.13
356 440 4.554363 CTCGCAGTCTACGCCCGG 62.554 72.222 0.00 0.00 0.00 5.73
429 528 2.693797 TGAGGTACGTTTGACGAGAC 57.306 50.000 7.54 4.87 46.05 3.36
466 568 7.947890 TCCCCAATTTCTGTTTACTCATTACTT 59.052 33.333 0.00 0.00 0.00 2.24
473 575 9.555727 TTTCTGTTTACTCATTACTTGTAGCTT 57.444 29.630 0.00 0.00 0.00 3.74
524 626 6.331845 TCGTTACGAATTTAGGCTTGATGTA 58.668 36.000 4.50 0.00 31.06 2.29
532 676 9.477484 CGAATTTAGGCTTGATGTATACTACTT 57.523 33.333 4.17 0.00 0.00 2.24
551 695 8.034058 ACTACTTAATTCTGTCAAGCAATGTC 57.966 34.615 0.00 0.00 0.00 3.06
564 709 6.866770 GTCAAGCAATGTCACTACTTACTACA 59.133 38.462 0.00 0.00 0.00 2.74
587 732 6.098124 ACAGAATTGTTTCAGTTTGGATCCAA 59.902 34.615 23.63 23.63 32.28 3.53
615 765 0.328926 TCCATGTGGCATCTTGAGCA 59.671 50.000 0.00 0.00 34.44 4.26
668 821 5.867903 TGAATTGTTTCAGTTTGGGTGAT 57.132 34.783 0.00 0.00 36.94 3.06
756 909 3.634397 ATGTCAACTAGGACCACATGG 57.366 47.619 0.00 0.00 36.97 3.66
843 996 9.421806 TCAAGGTTTATTGTATGCAAAATCAAG 57.578 29.630 0.00 0.00 38.21 3.02
858 1011 9.985730 TGCAAAATCAAGACTTATTTCAGATTT 57.014 25.926 0.00 0.00 35.62 2.17
903 1056 8.867112 ATCATATTGATCAATTTCTGTTGTGC 57.133 30.769 25.26 0.00 29.59 4.57
904 1057 8.058667 TCATATTGATCAATTTCTGTTGTGCT 57.941 30.769 25.26 0.50 32.50 4.40
905 1058 9.176460 TCATATTGATCAATTTCTGTTGTGCTA 57.824 29.630 25.26 3.85 32.50 3.49
906 1059 9.961265 CATATTGATCAATTTCTGTTGTGCTAT 57.039 29.630 25.26 6.03 32.50 2.97
908 1061 8.697846 ATTGATCAATTTCTGTTGTGCTATTG 57.302 30.769 15.36 0.00 0.00 1.90
909 1062 7.451501 TGATCAATTTCTGTTGTGCTATTGA 57.548 32.000 0.00 0.00 36.70 2.57
910 1063 7.307694 TGATCAATTTCTGTTGTGCTATTGAC 58.692 34.615 0.00 0.00 35.55 3.18
911 1064 6.631971 TCAATTTCTGTTGTGCTATTGACA 57.368 33.333 0.00 0.00 29.76 3.58
912 1065 7.218228 TCAATTTCTGTTGTGCTATTGACAT 57.782 32.000 0.00 0.00 29.76 3.06
913 1066 7.085746 TCAATTTCTGTTGTGCTATTGACATG 58.914 34.615 0.00 0.00 29.76 3.21
914 1067 6.579666 ATTTCTGTTGTGCTATTGACATGT 57.420 33.333 0.00 0.00 0.00 3.21
915 1068 5.611796 TTCTGTTGTGCTATTGACATGTC 57.388 39.130 19.27 19.27 0.00 3.06
916 1069 3.679502 TCTGTTGTGCTATTGACATGTCG 59.320 43.478 20.54 7.67 0.00 4.35
917 1070 3.398406 TGTTGTGCTATTGACATGTCGT 58.602 40.909 20.54 14.03 0.00 4.34
918 1071 4.561105 TGTTGTGCTATTGACATGTCGTA 58.439 39.130 20.54 14.39 0.00 3.43
919 1072 5.175127 TGTTGTGCTATTGACATGTCGTAT 58.825 37.500 20.54 17.47 0.00 3.06
920 1073 5.641636 TGTTGTGCTATTGACATGTCGTATT 59.358 36.000 20.54 7.93 0.00 1.89
921 1074 6.148645 TGTTGTGCTATTGACATGTCGTATTT 59.851 34.615 20.54 6.26 0.00 1.40
922 1075 7.332182 TGTTGTGCTATTGACATGTCGTATTTA 59.668 33.333 20.54 7.02 0.00 1.40
923 1076 8.335356 GTTGTGCTATTGACATGTCGTATTTAT 58.665 33.333 20.54 9.29 0.00 1.40
924 1077 8.432110 TGTGCTATTGACATGTCGTATTTATT 57.568 30.769 20.54 1.90 0.00 1.40
925 1078 8.334632 TGTGCTATTGACATGTCGTATTTATTG 58.665 33.333 20.54 8.88 0.00 1.90
926 1079 8.335356 GTGCTATTGACATGTCGTATTTATTGT 58.665 33.333 20.54 0.00 0.00 2.71
927 1080 9.535878 TGCTATTGACATGTCGTATTTATTGTA 57.464 29.630 20.54 5.53 0.00 2.41
945 1098 9.816787 TTTATTGTAATTTTTAGGGACCACTCT 57.183 29.630 0.00 0.00 0.00 3.24
946 1099 7.703058 ATTGTAATTTTTAGGGACCACTCTG 57.297 36.000 0.00 0.00 0.00 3.35
947 1100 6.195600 TGTAATTTTTAGGGACCACTCTGT 57.804 37.500 0.00 0.00 0.00 3.41
948 1101 6.607019 TGTAATTTTTAGGGACCACTCTGTT 58.393 36.000 0.00 0.00 0.00 3.16
949 1102 7.064229 TGTAATTTTTAGGGACCACTCTGTTT 58.936 34.615 0.00 0.00 0.00 2.83
950 1103 6.405278 AATTTTTAGGGACCACTCTGTTTG 57.595 37.500 0.00 0.00 0.00 2.93
951 1104 4.781775 TTTTAGGGACCACTCTGTTTGA 57.218 40.909 0.00 0.00 0.00 2.69
952 1105 4.781775 TTTAGGGACCACTCTGTTTGAA 57.218 40.909 0.00 0.00 0.00 2.69
953 1106 4.781775 TTAGGGACCACTCTGTTTGAAA 57.218 40.909 0.00 0.00 0.00 2.69
954 1107 3.662759 AGGGACCACTCTGTTTGAAAA 57.337 42.857 0.00 0.00 0.00 2.29
955 1108 4.184649 AGGGACCACTCTGTTTGAAAAT 57.815 40.909 0.00 0.00 0.00 1.82
956 1109 4.145052 AGGGACCACTCTGTTTGAAAATC 58.855 43.478 0.00 0.00 0.00 2.17
957 1110 3.255888 GGGACCACTCTGTTTGAAAATCC 59.744 47.826 0.00 0.00 0.00 3.01
958 1111 4.145052 GGACCACTCTGTTTGAAAATCCT 58.855 43.478 0.00 0.00 0.00 3.24
959 1112 4.022849 GGACCACTCTGTTTGAAAATCCTG 60.023 45.833 0.00 0.00 0.00 3.86
960 1113 3.891366 ACCACTCTGTTTGAAAATCCTGG 59.109 43.478 0.00 0.00 0.00 4.45
961 1114 4.144297 CCACTCTGTTTGAAAATCCTGGA 58.856 43.478 0.00 0.00 0.00 3.86
962 1115 4.768968 CCACTCTGTTTGAAAATCCTGGAT 59.231 41.667 2.57 2.57 0.00 3.41
963 1116 5.105997 CCACTCTGTTTGAAAATCCTGGATC 60.106 44.000 10.14 0.00 0.00 3.36
964 1117 5.012893 ACTCTGTTTGAAAATCCTGGATCC 58.987 41.667 10.14 4.20 0.00 3.36
971 1124 1.285280 AAATCCTGGATCCGACACCA 58.715 50.000 10.14 0.00 34.81 4.17
975 1128 2.606213 TGGATCCGACACCAGGCA 60.606 61.111 7.39 0.00 0.00 4.75
1064 1218 1.916000 GACTCGCGTACGTGCTAATTT 59.084 47.619 23.52 3.91 41.18 1.82
1081 1235 6.374333 TGCTAATTTTTCTACTGGTTAGCCTG 59.626 38.462 11.12 0.75 41.84 4.85
1120 1275 4.042884 TCATCCTTTGGATCCTGAGATGT 58.957 43.478 22.63 7.30 40.98 3.06
1177 1333 3.059386 GGGGCGAATGTGGCGAAA 61.059 61.111 0.00 0.00 34.76 3.46
1219 1375 2.568612 CAGCTCGCGACCTTCAGA 59.431 61.111 3.71 0.00 0.00 3.27
1306 1466 2.437413 GAATTGAAGTGGAGGGGACAC 58.563 52.381 0.00 0.00 39.10 3.67
1310 1470 1.780309 TGAAGTGGAGGGGACACATTT 59.220 47.619 0.00 0.00 41.21 2.32
1379 1552 5.392767 TCAACCTATCGATCTTGCTATCC 57.607 43.478 0.00 0.00 0.00 2.59
1410 1702 3.873361 TGTTTGTATCTGCTATCTGCTGC 59.127 43.478 0.00 0.00 43.37 5.25
1414 1706 4.062991 TGTATCTGCTATCTGCTGCATTG 58.937 43.478 1.31 0.00 43.37 2.82
1419 1711 2.945008 TGCTATCTGCTGCATTGTAACC 59.055 45.455 1.31 0.00 43.37 2.85
1526 1823 4.359105 TCAAAAGGGAGCCTAACTAGCTA 58.641 43.478 0.00 0.00 41.75 3.32
1527 1824 4.781087 TCAAAAGGGAGCCTAACTAGCTAA 59.219 41.667 0.00 0.00 41.75 3.09
1585 1882 6.452872 GCAAACATAATGTGCTGTTTCGATTC 60.453 38.462 0.00 0.00 42.16 2.52
1608 1905 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
1610 1907 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
1672 2296 8.052748 TGACAAATATGCTACTATTGGGAAAGT 58.947 33.333 0.00 0.00 0.00 2.66
1677 2301 5.499004 TGCTACTATTGGGAAAGTTGTCT 57.501 39.130 0.00 0.00 0.00 3.41
1716 2347 7.849160 TCAGCCATTTTGATATTTTCCATCAA 58.151 30.769 0.00 0.00 39.91 2.57
1717 2348 7.765360 TCAGCCATTTTGATATTTTCCATCAAC 59.235 33.333 0.00 0.00 41.02 3.18
1884 2699 5.111293 GGTTTGGCCAATTGATCAGTAATG 58.889 41.667 21.26 0.00 37.17 1.90
1940 2787 8.459911 AACCTAATATTATGCTAAAACGCCTT 57.540 30.769 0.00 0.00 0.00 4.35
1949 2796 3.010420 GCTAAAACGCCTTTCTGGATCT 58.990 45.455 0.00 0.00 38.35 2.75
1962 2809 6.433847 TTTCTGGATCTAGAGAACACCAAA 57.566 37.500 8.93 0.00 0.00 3.28
2004 2851 7.809546 TCATCTAGTATCAGTTAGGTGTCAG 57.190 40.000 0.00 0.00 31.45 3.51
2053 2900 7.378461 GCTGATAGTTCTAGATTTCACTCTTCG 59.622 40.741 0.00 0.00 0.00 3.79
2068 2915 3.144506 CTCTTCGCATGGCATAATTCCT 58.855 45.455 0.00 0.00 0.00 3.36
2069 2924 4.202357 ACTCTTCGCATGGCATAATTCCTA 60.202 41.667 0.00 0.00 0.00 2.94
2076 2931 5.009631 GCATGGCATAATTCCTATGTGGTA 58.990 41.667 0.00 0.00 39.81 3.25
2080 2935 6.765403 TGGCATAATTCCTATGTGGTAGTAC 58.235 40.000 0.00 0.00 39.81 2.73
2117 2972 4.569966 CCATGTGCTACAAGAGATGAGAAC 59.430 45.833 0.00 0.00 0.00 3.01
2214 3069 7.217447 GTGACATCCGTAAAAATTCGGTATTTG 59.783 37.037 3.53 1.75 45.88 2.32
2600 3455 9.425577 GGTCAGTCTTATAAGCTTATATTGTCC 57.574 37.037 23.50 19.74 0.00 4.02
2647 3502 6.680810 TGCTTCACATCATTTTAGAGTTTGG 58.319 36.000 0.00 0.00 0.00 3.28
2701 3571 8.413229 AGTGCAGTGTTATTTGATGTACTTTTT 58.587 29.630 0.00 0.00 33.82 1.94
2757 3628 1.348036 ACTTGCAGGTCCTTGGTAGTC 59.652 52.381 0.00 0.00 0.00 2.59
2797 3668 2.106566 TGGGAAGAAAAAGCTTGTGCA 58.893 42.857 0.00 0.00 42.74 4.57
2863 3734 4.574828 TGAACTAGCTCAGGTTTGTGTTTC 59.425 41.667 0.00 0.00 0.00 2.78
2885 3756 9.169468 GTTTCTTGACACAATGTTACAATACAG 57.831 33.333 0.00 0.00 0.00 2.74
2909 3780 5.865552 GGCATATCAATTGGCATATGTTGAC 59.134 40.000 20.13 9.58 39.31 3.18
2954 3825 3.177997 TGGAAAACTCTTTTGCCAAGC 57.822 42.857 0.00 0.00 46.25 4.01
2955 3826 2.765699 TGGAAAACTCTTTTGCCAAGCT 59.234 40.909 0.00 0.00 46.25 3.74
2961 3832 7.307396 GGAAAACTCTTTTGCCAAGCTTATTTC 60.307 37.037 0.00 0.00 40.03 2.17
2966 3837 5.984926 TCTTTTGCCAAGCTTATTTCAGTTG 59.015 36.000 0.00 0.00 0.00 3.16
6794 16149 7.399245 TGAAACTTTGCTAAAGGTAAACACT 57.601 32.000 11.59 0.00 37.47 3.55
6797 16153 4.642885 ACTTTGCTAAAGGTAAACACTGCA 59.357 37.500 11.59 0.00 42.82 4.41
6810 16166 4.574674 AACACTGCATCTGGATTTCCTA 57.425 40.909 0.00 0.00 36.82 2.94
6843 16199 4.199310 CAATCTACATGGTTCATTCCCGT 58.801 43.478 0.00 0.00 0.00 5.28
6861 16217 3.526534 CCGTGCCAAAAGGAAAGAAAAA 58.473 40.909 0.00 0.00 0.00 1.94
6921 16281 7.872061 ACTATGATATATTCACCTTGGACCA 57.128 36.000 0.00 0.00 37.11 4.02
6942 16302 2.607187 AGACCTACACTGCGATTTTCG 58.393 47.619 0.00 0.00 43.89 3.46
6943 16303 2.230508 AGACCTACACTGCGATTTTCGA 59.769 45.455 0.32 0.00 43.74 3.71
6954 16314 1.267732 CGATTTTCGAGAGCCATGTGC 60.268 52.381 0.00 0.00 43.74 4.57
6955 16315 1.739466 GATTTTCGAGAGCCATGTGCA 59.261 47.619 8.58 0.00 44.83 4.57
6956 16316 1.825090 TTTTCGAGAGCCATGTGCAT 58.175 45.000 8.58 0.00 44.83 3.96
6957 16317 1.089112 TTTCGAGAGCCATGTGCATG 58.911 50.000 5.26 5.26 44.83 4.06
6958 16318 0.036105 TTCGAGAGCCATGTGCATGT 60.036 50.000 10.76 0.00 44.83 3.21
6959 16319 0.741927 TCGAGAGCCATGTGCATGTG 60.742 55.000 10.76 4.40 44.83 3.21
7032 16394 0.249741 GGCGCCTGTATAACATCGGT 60.250 55.000 22.15 0.00 0.00 4.69
7040 16402 5.043903 CCTGTATAACATCGGTGACTTCTG 58.956 45.833 0.65 0.00 0.00 3.02
7116 16478 0.811616 CAGGGATGGCAAGCGTAGAC 60.812 60.000 0.00 0.00 0.00 2.59
7142 16504 3.680786 CCGTGCGTCACCCTCAGA 61.681 66.667 4.73 0.00 0.00 3.27
7180 16543 9.055248 CAGTTTCGAAGCAAAGTCATAATTTAG 57.945 33.333 14.70 0.00 0.00 1.85
7191 16554 6.428385 AGTCATAATTTAGCTGTGCTGTTC 57.572 37.500 0.00 0.00 40.10 3.18
7246 16617 0.671781 CCTGTGCTACTGGTGCAGTC 60.672 60.000 0.00 0.00 41.21 3.51
7342 17127 2.481568 TGTGCGATTTCTTGCTTCAGAG 59.518 45.455 0.00 0.00 32.50 3.35
7376 17161 6.601613 TGTTCTTCAGTAAAAGTTGTGGATGT 59.398 34.615 0.00 0.00 0.00 3.06
7378 17163 8.617809 GTTCTTCAGTAAAAGTTGTGGATGTTA 58.382 33.333 0.00 0.00 0.00 2.41
7500 17287 4.820744 CCCGGACAGGCCCCAATG 62.821 72.222 0.73 0.00 39.21 2.82
7561 17348 4.160252 CCGGATTCAGGGTTCATGAAAATT 59.840 41.667 10.35 0.00 39.92 1.82
7565 17353 7.649306 CGGATTCAGGGTTCATGAAAATTAATC 59.351 37.037 10.35 14.26 39.92 1.75
7591 17379 1.271102 GCAGCCTATAAGGAGGACTCG 59.729 57.143 0.00 0.00 37.67 4.18
7621 17409 1.754226 GCTTGGGGTTTTGTCAGTTCA 59.246 47.619 0.00 0.00 0.00 3.18
7652 17440 1.802636 CGATTTCATTGCTGCGGGT 59.197 52.632 0.00 0.00 0.00 5.28
7687 17936 0.174389 CATGTGCGTACTGCTCTCCT 59.826 55.000 4.97 0.00 46.63 3.69
7688 17937 1.405463 CATGTGCGTACTGCTCTCCTA 59.595 52.381 4.97 0.00 46.63 2.94
7719 17968 1.636148 AGCATGTGTCAAGGCCATTT 58.364 45.000 5.01 0.00 0.00 2.32
7751 18000 2.124693 CCTGGGTTTGCACCGTGTT 61.125 57.895 0.00 0.00 45.39 3.32
7758 18007 2.812011 GGTTTGCACCGTGTTATCTTCT 59.188 45.455 0.00 0.00 31.60 2.85
7766 18015 5.168569 CACCGTGTTATCTTCTAAGCAGAA 58.831 41.667 0.00 0.00 38.49 3.02
7785 18051 1.928868 ATGCCCTCAAAGACCAAAGG 58.071 50.000 0.00 0.00 0.00 3.11
7817 18083 1.344763 CAGATATTGGGGTCCTCCGAC 59.655 57.143 0.00 0.00 38.38 4.79
7822 18090 2.362120 GGGGTCCTCCGACGAGAA 60.362 66.667 0.00 0.00 40.17 2.87
7836 18112 1.203523 ACGAGAAGCTAGAAGCCTGTG 59.796 52.381 0.00 0.00 43.77 3.66
7837 18113 1.650825 GAGAAGCTAGAAGCCTGTGC 58.349 55.000 0.00 0.00 43.77 4.57
7841 18117 1.573108 AGCTAGAAGCCTGTGCCTTA 58.427 50.000 0.00 0.00 43.77 2.69
7842 18118 2.122768 AGCTAGAAGCCTGTGCCTTAT 58.877 47.619 0.00 0.00 43.77 1.73
7844 18120 2.420687 GCTAGAAGCCTGTGCCTTATGT 60.421 50.000 0.00 0.00 38.69 2.29
7845 18121 2.409948 AGAAGCCTGTGCCTTATGTC 57.590 50.000 0.00 0.00 38.69 3.06
7887 18164 7.620880 TGCTAAGGTGAATGTAATAGAGTTGT 58.379 34.615 0.00 0.00 0.00 3.32
7891 18168 5.877012 AGGTGAATGTAATAGAGTTGTGCAG 59.123 40.000 0.00 0.00 0.00 4.41
7895 18184 7.011389 GTGAATGTAATAGAGTTGTGCAGCATA 59.989 37.037 0.00 0.00 0.00 3.14
7906 18196 1.541147 GTGCAGCATAGTTTTGAGGCA 59.459 47.619 0.00 0.00 0.00 4.75
7909 18199 1.474077 CAGCATAGTTTTGAGGCACCC 59.526 52.381 0.00 0.00 0.00 4.61
7927 18217 0.878523 CCGTGCCGTTCTCTGTTTGA 60.879 55.000 0.00 0.00 0.00 2.69
7928 18218 0.934496 CGTGCCGTTCTCTGTTTGAA 59.066 50.000 0.00 0.00 0.00 2.69
7929 18219 1.332904 CGTGCCGTTCTCTGTTTGAAC 60.333 52.381 0.00 0.00 40.05 3.18
7930 18220 1.940613 GTGCCGTTCTCTGTTTGAACT 59.059 47.619 0.00 0.00 40.95 3.01
7931 18221 1.939934 TGCCGTTCTCTGTTTGAACTG 59.060 47.619 0.00 0.00 40.95 3.16
7932 18222 2.210116 GCCGTTCTCTGTTTGAACTGA 58.790 47.619 0.00 3.88 40.95 3.41
7933 18223 2.612212 GCCGTTCTCTGTTTGAACTGAA 59.388 45.455 5.23 1.03 40.95 3.02
7934 18224 3.064820 GCCGTTCTCTGTTTGAACTGAAA 59.935 43.478 5.23 1.66 40.95 2.69
7935 18225 4.438200 GCCGTTCTCTGTTTGAACTGAAAA 60.438 41.667 5.23 0.00 40.95 2.29
7936 18226 5.733373 GCCGTTCTCTGTTTGAACTGAAAAT 60.733 40.000 5.23 0.00 40.95 1.82
7937 18227 5.682862 CCGTTCTCTGTTTGAACTGAAAATG 59.317 40.000 5.23 4.27 40.95 2.32
7938 18228 6.258160 CGTTCTCTGTTTGAACTGAAAATGT 58.742 36.000 5.23 0.00 40.95 2.71
7939 18229 6.412072 CGTTCTCTGTTTGAACTGAAAATGTC 59.588 38.462 5.23 0.00 40.95 3.06
7940 18230 7.475840 GTTCTCTGTTTGAACTGAAAATGTCT 58.524 34.615 5.23 0.00 40.23 3.41
7941 18231 7.019774 TCTCTGTTTGAACTGAAAATGTCTG 57.980 36.000 5.23 0.00 36.61 3.51
7942 18232 6.599244 TCTCTGTTTGAACTGAAAATGTCTGT 59.401 34.615 5.23 0.00 39.91 3.41
7944 18234 7.601856 TCTGTTTGAACTGAAAATGTCTGTTT 58.398 30.769 0.00 0.00 45.43 2.83
7945 18235 7.541783 TCTGTTTGAACTGAAAATGTCTGTTTG 59.458 33.333 0.00 0.00 45.43 2.93
7986 18277 4.869861 ACTTTGTTGTTGCTTTGGTGATTC 59.130 37.500 0.00 0.00 0.00 2.52
8026 18318 6.374894 CACCCCGTTTAAGTGGAAATACATAA 59.625 38.462 0.00 0.00 0.00 1.90
8028 18320 7.067737 ACCCCGTTTAAGTGGAAATACATAATG 59.932 37.037 0.00 0.00 0.00 1.90
8029 18321 7.067737 CCCCGTTTAAGTGGAAATACATAATGT 59.932 37.037 0.00 0.00 0.00 2.71
8030 18322 7.913297 CCCGTTTAAGTGGAAATACATAATGTG 59.087 37.037 0.00 0.00 0.00 3.21
8031 18323 8.455682 CCGTTTAAGTGGAAATACATAATGTGT 58.544 33.333 0.00 0.00 44.95 3.72
8032 18324 9.272901 CGTTTAAGTGGAAATACATAATGTGTG 57.727 33.333 0.00 0.00 42.24 3.82
8046 18338 7.630026 ACATAATGTGTGTTTGTATAGATGCG 58.370 34.615 0.00 0.00 40.28 4.73
8053 18387 4.266976 GTGTTTGTATAGATGCGCGTTACT 59.733 41.667 8.43 7.14 0.00 2.24
8055 18389 6.143438 GTGTTTGTATAGATGCGCGTTACTAT 59.857 38.462 8.43 15.46 0.00 2.12
8091 18445 5.553290 TTTTTGATGTGTTTCGACTGACA 57.447 34.783 0.00 0.00 0.00 3.58
8092 18446 4.794248 TTTGATGTGTTTCGACTGACAG 57.206 40.909 0.00 0.00 0.00 3.51
8096 18450 3.254470 TGTGTTTCGACTGACAGGAAA 57.746 42.857 7.51 5.20 0.00 3.13
8113 18467 2.099756 GGAAAGAATTGAATGCTCCCCG 59.900 50.000 0.00 0.00 0.00 5.73
8118 18472 3.969250 TTGAATGCTCCCCGACCGC 62.969 63.158 0.00 0.00 0.00 5.68
8131 18485 1.087771 CGACCGCCCCTTATGTGAAC 61.088 60.000 0.00 0.00 0.00 3.18
8133 18487 1.219664 CCGCCCCTTATGTGAACGA 59.780 57.895 0.00 0.00 0.00 3.85
8167 18521 8.812972 CCTTGTACATATATAGACCTTTAGCCA 58.187 37.037 0.00 0.00 0.00 4.75
8168 18522 9.640963 CTTGTACATATATAGACCTTTAGCCAC 57.359 37.037 0.00 0.00 0.00 5.01
8169 18523 8.951614 TGTACATATATAGACCTTTAGCCACT 57.048 34.615 0.00 0.00 0.00 4.00
8170 18524 8.803235 TGTACATATATAGACCTTTAGCCACTG 58.197 37.037 0.00 0.00 0.00 3.66
8171 18525 6.702329 ACATATATAGACCTTTAGCCACTGC 58.298 40.000 0.00 0.00 37.95 4.40
8172 18526 4.625607 ATATAGACCTTTAGCCACTGCC 57.374 45.455 0.00 0.00 38.69 4.85
8173 18527 1.651737 TAGACCTTTAGCCACTGCCA 58.348 50.000 0.00 0.00 38.69 4.92
8174 18528 0.036875 AGACCTTTAGCCACTGCCAC 59.963 55.000 0.00 0.00 38.69 5.01
8175 18529 0.036875 GACCTTTAGCCACTGCCACT 59.963 55.000 0.00 0.00 38.69 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.655211 CCCAACTGGCTGGAGGCT 61.655 66.667 1.53 0.00 38.96 4.58
10 11 0.034186 TAATGAGCCCAGCCCAACTG 60.034 55.000 0.00 0.00 46.77 3.16
11 12 0.257039 CTAATGAGCCCAGCCCAACT 59.743 55.000 0.00 0.00 0.00 3.16
12 13 1.387295 GCTAATGAGCCCAGCCCAAC 61.387 60.000 0.00 0.00 43.49 3.77
13 14 1.076777 GCTAATGAGCCCAGCCCAA 60.077 57.895 0.00 0.00 43.49 4.12
14 15 2.597340 GCTAATGAGCCCAGCCCA 59.403 61.111 0.00 0.00 43.49 5.36
15 16 2.592861 CGCTAATGAGCCCAGCCC 60.593 66.667 0.00 0.00 46.86 5.19
16 17 3.282920 GCGCTAATGAGCCCAGCC 61.283 66.667 0.00 0.00 46.86 4.85
17 18 2.203126 AGCGCTAATGAGCCCAGC 60.203 61.111 8.99 0.00 46.86 4.85
18 19 1.953138 CGAGCGCTAATGAGCCCAG 60.953 63.158 11.50 0.00 46.86 4.45
19 20 2.106938 CGAGCGCTAATGAGCCCA 59.893 61.111 11.50 0.00 46.86 5.36
20 21 1.521681 AACGAGCGCTAATGAGCCC 60.522 57.895 11.50 0.00 46.86 5.19
21 22 1.638467 CAACGAGCGCTAATGAGCC 59.362 57.895 11.50 0.00 46.86 4.70
22 23 1.011794 GCAACGAGCGCTAATGAGC 60.012 57.895 11.50 7.83 46.00 4.26
45 46 1.378646 GGGTTAAGTGAGGCTGGCC 60.379 63.158 3.00 3.00 0.00 5.36
46 47 0.678048 CTGGGTTAAGTGAGGCTGGC 60.678 60.000 0.00 0.00 0.00 4.85
47 48 0.678048 GCTGGGTTAAGTGAGGCTGG 60.678 60.000 0.00 0.00 0.00 4.85
48 49 0.678048 GGCTGGGTTAAGTGAGGCTG 60.678 60.000 0.00 0.00 0.00 4.85
49 50 1.685820 GGCTGGGTTAAGTGAGGCT 59.314 57.895 0.00 0.00 0.00 4.58
50 51 1.378646 GGGCTGGGTTAAGTGAGGC 60.379 63.158 0.00 0.00 0.00 4.70
51 52 0.625849 ATGGGCTGGGTTAAGTGAGG 59.374 55.000 0.00 0.00 0.00 3.86
52 53 3.864789 ATATGGGCTGGGTTAAGTGAG 57.135 47.619 0.00 0.00 0.00 3.51
53 54 4.229582 AGAAATATGGGCTGGGTTAAGTGA 59.770 41.667 0.00 0.00 0.00 3.41
54 55 4.536765 AGAAATATGGGCTGGGTTAAGTG 58.463 43.478 0.00 0.00 0.00 3.16
55 56 4.881157 AGAAATATGGGCTGGGTTAAGT 57.119 40.909 0.00 0.00 0.00 2.24
56 57 5.449553 AGAAGAAATATGGGCTGGGTTAAG 58.550 41.667 0.00 0.00 0.00 1.85
57 58 5.466127 AGAAGAAATATGGGCTGGGTTAA 57.534 39.130 0.00 0.00 0.00 2.01
58 59 6.584471 TTAGAAGAAATATGGGCTGGGTTA 57.416 37.500 0.00 0.00 0.00 2.85
59 60 5.466127 TTAGAAGAAATATGGGCTGGGTT 57.534 39.130 0.00 0.00 0.00 4.11
60 61 5.466127 TTTAGAAGAAATATGGGCTGGGT 57.534 39.130 0.00 0.00 0.00 4.51
61 62 6.790232 TTTTTAGAAGAAATATGGGCTGGG 57.210 37.500 0.00 0.00 0.00 4.45
86 87 9.051679 GCTGGGTTAAGATGTTTTTGTTTTTAT 57.948 29.630 0.00 0.00 0.00 1.40
87 88 7.496263 GGCTGGGTTAAGATGTTTTTGTTTTTA 59.504 33.333 0.00 0.00 0.00 1.52
88 89 6.317642 GGCTGGGTTAAGATGTTTTTGTTTTT 59.682 34.615 0.00 0.00 0.00 1.94
89 90 5.820423 GGCTGGGTTAAGATGTTTTTGTTTT 59.180 36.000 0.00 0.00 0.00 2.43
90 91 5.364778 GGCTGGGTTAAGATGTTTTTGTTT 58.635 37.500 0.00 0.00 0.00 2.83
91 92 4.202315 GGGCTGGGTTAAGATGTTTTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
92 93 3.323691 GGGCTGGGTTAAGATGTTTTTGT 59.676 43.478 0.00 0.00 0.00 2.83
93 94 3.323403 TGGGCTGGGTTAAGATGTTTTTG 59.677 43.478 0.00 0.00 0.00 2.44
94 95 3.582164 TGGGCTGGGTTAAGATGTTTTT 58.418 40.909 0.00 0.00 0.00 1.94
95 96 3.252554 TGGGCTGGGTTAAGATGTTTT 57.747 42.857 0.00 0.00 0.00 2.43
96 97 2.990740 TGGGCTGGGTTAAGATGTTT 57.009 45.000 0.00 0.00 0.00 2.83
97 98 2.358195 GGATGGGCTGGGTTAAGATGTT 60.358 50.000 0.00 0.00 0.00 2.71
98 99 1.215423 GGATGGGCTGGGTTAAGATGT 59.785 52.381 0.00 0.00 0.00 3.06
99 100 1.496429 AGGATGGGCTGGGTTAAGATG 59.504 52.381 0.00 0.00 0.00 2.90
100 101 1.912862 AGGATGGGCTGGGTTAAGAT 58.087 50.000 0.00 0.00 0.00 2.40
101 102 1.564348 GAAGGATGGGCTGGGTTAAGA 59.436 52.381 0.00 0.00 0.00 2.10
102 103 1.747206 CGAAGGATGGGCTGGGTTAAG 60.747 57.143 0.00 0.00 0.00 1.85
103 104 0.254747 CGAAGGATGGGCTGGGTTAA 59.745 55.000 0.00 0.00 0.00 2.01
104 105 1.912220 CGAAGGATGGGCTGGGTTA 59.088 57.895 0.00 0.00 0.00 2.85
105 106 2.677228 CGAAGGATGGGCTGGGTT 59.323 61.111 0.00 0.00 0.00 4.11
106 107 4.115199 GCGAAGGATGGGCTGGGT 62.115 66.667 0.00 0.00 0.00 4.51
107 108 3.350031 AAGCGAAGGATGGGCTGGG 62.350 63.158 0.00 0.00 37.06 4.45
108 109 2.117156 CAAGCGAAGGATGGGCTGG 61.117 63.158 0.00 0.00 37.06 4.85
109 110 1.078214 TCAAGCGAAGGATGGGCTG 60.078 57.895 0.00 0.00 37.06 4.85
110 111 1.078143 GTCAAGCGAAGGATGGGCT 60.078 57.895 0.00 0.00 39.01 5.19
111 112 2.115291 GGTCAAGCGAAGGATGGGC 61.115 63.158 0.00 0.00 0.00 5.36
112 113 1.452108 GGGTCAAGCGAAGGATGGG 60.452 63.158 0.00 0.00 0.00 4.00
113 114 0.035056 AAGGGTCAAGCGAAGGATGG 60.035 55.000 0.00 0.00 0.00 3.51
114 115 1.373570 GAAGGGTCAAGCGAAGGATG 58.626 55.000 0.00 0.00 0.00 3.51
115 116 0.108138 CGAAGGGTCAAGCGAAGGAT 60.108 55.000 0.00 0.00 0.00 3.24
116 117 1.292223 CGAAGGGTCAAGCGAAGGA 59.708 57.895 0.00 0.00 0.00 3.36
117 118 2.391389 GCGAAGGGTCAAGCGAAGG 61.391 63.158 0.00 0.00 0.00 3.46
118 119 2.391389 GGCGAAGGGTCAAGCGAAG 61.391 63.158 0.00 0.00 0.00 3.79
119 120 2.358247 GGCGAAGGGTCAAGCGAA 60.358 61.111 0.00 0.00 0.00 4.70
120 121 4.735132 CGGCGAAGGGTCAAGCGA 62.735 66.667 0.00 0.00 0.00 4.93
122 123 3.119096 GACGGCGAAGGGTCAAGC 61.119 66.667 16.62 0.00 33.41 4.01
123 124 2.809601 CGACGGCGAAGGGTCAAG 60.810 66.667 16.62 0.00 40.82 3.02
124 125 4.367023 CCGACGGCGAAGGGTCAA 62.367 66.667 15.16 0.00 40.82 3.18
151 152 4.075793 TAGGTGGAGGGGCGAGCT 62.076 66.667 0.00 0.00 36.92 4.09
152 153 3.851128 GTAGGTGGAGGGGCGAGC 61.851 72.222 0.00 0.00 0.00 5.03
153 154 3.155167 GGTAGGTGGAGGGGCGAG 61.155 72.222 0.00 0.00 0.00 5.03
154 155 4.791069 GGGTAGGTGGAGGGGCGA 62.791 72.222 0.00 0.00 0.00 5.54
155 156 4.798682 AGGGTAGGTGGAGGGGCG 62.799 72.222 0.00 0.00 0.00 6.13
156 157 2.286197 AAGGGTAGGTGGAGGGGC 60.286 66.667 0.00 0.00 0.00 5.80
157 158 1.693103 GGAAGGGTAGGTGGAGGGG 60.693 68.421 0.00 0.00 0.00 4.79
158 159 2.064581 CGGAAGGGTAGGTGGAGGG 61.065 68.421 0.00 0.00 0.00 4.30
159 160 3.630289 CGGAAGGGTAGGTGGAGG 58.370 66.667 0.00 0.00 0.00 4.30
291 314 2.363795 CAGGGGCGGGTAGAGTCA 60.364 66.667 0.00 0.00 0.00 3.41
400 498 3.706600 AACGTACCTCAAATTGGGCTA 57.293 42.857 0.00 0.00 0.00 3.93
406 504 4.446719 GTCTCGTCAAACGTACCTCAAATT 59.553 41.667 0.00 0.00 43.14 1.82
429 528 1.928868 AATTGGGGAACAGGCAGAAG 58.071 50.000 0.00 0.00 0.00 2.85
466 568 1.667830 GGCAGCACGACAAGCTACA 60.668 57.895 0.00 0.00 41.14 2.74
469 571 2.974698 GTGGCAGCACGACAAGCT 60.975 61.111 0.00 0.00 44.62 3.74
524 626 9.672673 ACATTGCTTGACAGAATTAAGTAGTAT 57.327 29.630 0.00 0.00 0.00 2.12
532 676 7.161404 AGTAGTGACATTGCTTGACAGAATTA 58.839 34.615 0.00 0.00 30.62 1.40
542 686 7.228314 TCTGTAGTAAGTAGTGACATTGCTT 57.772 36.000 6.54 6.54 0.00 3.91
545 689 9.424319 ACAATTCTGTAGTAAGTAGTGACATTG 57.576 33.333 0.00 0.00 32.54 2.82
551 695 9.477484 ACTGAAACAATTCTGTAGTAAGTAGTG 57.523 33.333 0.07 0.00 43.40 2.74
564 709 6.729690 TTGGATCCAAACTGAAACAATTCT 57.270 33.333 25.13 0.00 33.26 2.40
587 732 2.885135 TGCCACATGGACTCAGAAAT 57.115 45.000 0.87 0.00 37.39 2.17
666 819 8.820933 TGAGAAGAATGTATCGATTGTTTGATC 58.179 33.333 1.71 0.00 0.00 2.92
667 820 8.722480 TGAGAAGAATGTATCGATTGTTTGAT 57.278 30.769 1.71 0.00 0.00 2.57
668 821 8.722480 ATGAGAAGAATGTATCGATTGTTTGA 57.278 30.769 1.71 0.00 0.00 2.69
715 868 9.065798 TGACATTCTGTTCTTCAATATGACAAA 57.934 29.630 0.00 0.00 0.00 2.83
899 1052 8.334632 CAATAAATACGACATGTCAATAGCACA 58.665 33.333 24.93 3.87 0.00 4.57
900 1053 8.335356 ACAATAAATACGACATGTCAATAGCAC 58.665 33.333 24.93 0.00 0.00 4.40
901 1054 8.432110 ACAATAAATACGACATGTCAATAGCA 57.568 30.769 24.93 6.63 0.00 3.49
919 1072 9.816787 AGAGTGGTCCCTAAAAATTACAATAAA 57.183 29.630 0.00 0.00 0.00 1.40
920 1073 9.238368 CAGAGTGGTCCCTAAAAATTACAATAA 57.762 33.333 0.00 0.00 0.00 1.40
921 1074 8.387813 ACAGAGTGGTCCCTAAAAATTACAATA 58.612 33.333 0.00 0.00 0.00 1.90
922 1075 7.238710 ACAGAGTGGTCCCTAAAAATTACAAT 58.761 34.615 0.00 0.00 0.00 2.71
923 1076 6.607019 ACAGAGTGGTCCCTAAAAATTACAA 58.393 36.000 0.00 0.00 0.00 2.41
924 1077 6.195600 ACAGAGTGGTCCCTAAAAATTACA 57.804 37.500 0.00 0.00 0.00 2.41
925 1078 7.229907 TCAAACAGAGTGGTCCCTAAAAATTAC 59.770 37.037 0.00 0.00 0.00 1.89
926 1079 7.291566 TCAAACAGAGTGGTCCCTAAAAATTA 58.708 34.615 0.00 0.00 0.00 1.40
927 1080 6.133356 TCAAACAGAGTGGTCCCTAAAAATT 58.867 36.000 0.00 0.00 0.00 1.82
928 1081 5.701224 TCAAACAGAGTGGTCCCTAAAAAT 58.299 37.500 0.00 0.00 0.00 1.82
929 1082 5.118729 TCAAACAGAGTGGTCCCTAAAAA 57.881 39.130 0.00 0.00 0.00 1.94
930 1083 4.781775 TCAAACAGAGTGGTCCCTAAAA 57.218 40.909 0.00 0.00 0.00 1.52
931 1084 4.781775 TTCAAACAGAGTGGTCCCTAAA 57.218 40.909 0.00 0.00 0.00 1.85
932 1085 4.781775 TTTCAAACAGAGTGGTCCCTAA 57.218 40.909 0.00 0.00 0.00 2.69
933 1086 4.781775 TTTTCAAACAGAGTGGTCCCTA 57.218 40.909 0.00 0.00 0.00 3.53
934 1087 3.662759 TTTTCAAACAGAGTGGTCCCT 57.337 42.857 0.00 0.00 0.00 4.20
935 1088 3.255888 GGATTTTCAAACAGAGTGGTCCC 59.744 47.826 0.00 0.00 0.00 4.46
936 1089 4.022849 CAGGATTTTCAAACAGAGTGGTCC 60.023 45.833 0.00 0.00 0.00 4.46
937 1090 4.022849 CCAGGATTTTCAAACAGAGTGGTC 60.023 45.833 0.00 0.00 0.00 4.02
938 1091 3.891366 CCAGGATTTTCAAACAGAGTGGT 59.109 43.478 0.00 0.00 0.00 4.16
939 1092 4.144297 TCCAGGATTTTCAAACAGAGTGG 58.856 43.478 0.00 0.00 0.00 4.00
940 1093 5.105997 GGATCCAGGATTTTCAAACAGAGTG 60.106 44.000 6.95 0.00 0.00 3.51
941 1094 5.012893 GGATCCAGGATTTTCAAACAGAGT 58.987 41.667 6.95 0.00 0.00 3.24
942 1095 4.095483 CGGATCCAGGATTTTCAAACAGAG 59.905 45.833 13.41 0.00 0.00 3.35
943 1096 4.009675 CGGATCCAGGATTTTCAAACAGA 58.990 43.478 13.41 0.00 0.00 3.41
944 1097 4.009675 TCGGATCCAGGATTTTCAAACAG 58.990 43.478 13.41 0.00 0.00 3.16
945 1098 3.756434 GTCGGATCCAGGATTTTCAAACA 59.244 43.478 13.41 0.00 0.00 2.83
946 1099 3.756434 TGTCGGATCCAGGATTTTCAAAC 59.244 43.478 13.41 0.00 0.00 2.93
947 1100 3.756434 GTGTCGGATCCAGGATTTTCAAA 59.244 43.478 13.41 0.00 0.00 2.69
948 1101 3.343617 GTGTCGGATCCAGGATTTTCAA 58.656 45.455 13.41 0.00 0.00 2.69
949 1102 2.355716 GGTGTCGGATCCAGGATTTTCA 60.356 50.000 13.41 0.00 0.00 2.69
950 1103 2.289565 GGTGTCGGATCCAGGATTTTC 58.710 52.381 13.41 0.00 0.00 2.29
951 1104 1.633432 TGGTGTCGGATCCAGGATTTT 59.367 47.619 13.41 0.00 0.00 1.82
952 1105 1.210478 CTGGTGTCGGATCCAGGATTT 59.790 52.381 13.41 0.00 45.11 2.17
953 1106 0.833287 CTGGTGTCGGATCCAGGATT 59.167 55.000 13.41 0.00 45.11 3.01
954 1107 2.521103 CTGGTGTCGGATCCAGGAT 58.479 57.895 13.41 0.00 45.11 3.24
955 1108 4.034246 CTGGTGTCGGATCCAGGA 57.966 61.111 13.41 0.00 45.11 3.86
958 1111 2.606213 TGCCTGGTGTCGGATCCA 60.606 61.111 13.41 0.00 0.00 3.41
959 1112 1.899437 TTCTGCCTGGTGTCGGATCC 61.899 60.000 0.00 0.00 0.00 3.36
960 1113 0.460987 CTTCTGCCTGGTGTCGGATC 60.461 60.000 0.00 0.00 0.00 3.36
961 1114 1.599047 CTTCTGCCTGGTGTCGGAT 59.401 57.895 0.00 0.00 0.00 4.18
962 1115 2.583441 CCTTCTGCCTGGTGTCGGA 61.583 63.158 0.00 0.00 0.00 4.55
963 1116 2.046892 CCTTCTGCCTGGTGTCGG 60.047 66.667 0.00 0.00 0.00 4.79
964 1117 2.046892 CCCTTCTGCCTGGTGTCG 60.047 66.667 0.00 0.00 0.00 4.35
1059 1213 6.242396 TGCAGGCTAACCAGTAGAAAAATTA 58.758 36.000 0.00 0.00 39.06 1.40
1064 1218 3.609853 CATGCAGGCTAACCAGTAGAAA 58.390 45.455 0.00 0.00 39.06 2.52
1081 1235 0.732196 TGAAAAATCACGCGCCATGC 60.732 50.000 5.73 0.00 41.47 4.06
1093 1247 6.496743 TCTCAGGATCCAAAGGATGAAAAAT 58.503 36.000 15.82 0.00 43.27 1.82
1120 1275 2.030371 TGGAAGTTGCAAGCACAATCA 58.970 42.857 0.00 0.00 0.00 2.57
1156 1312 4.778143 GCCACATTCGCCCCGACT 62.778 66.667 0.00 0.00 34.89 4.18
1164 1320 0.443869 CCTGACTTTCGCCACATTCG 59.556 55.000 0.00 0.00 0.00 3.34
1177 1333 0.176680 GCATGACATCCGTCCTGACT 59.823 55.000 0.00 0.00 41.85 3.41
1355 1521 6.892456 AGGATAGCAAGATCGATAGGTTGATA 59.108 38.462 15.39 13.85 31.02 2.15
1359 1525 4.464597 GGAGGATAGCAAGATCGATAGGTT 59.535 45.833 0.00 0.00 0.00 3.50
1379 1552 2.159653 GCAGATACAAACAAGTGCGGAG 60.160 50.000 0.00 0.00 0.00 4.63
1410 1702 7.276218 GTCATTCCATTTGTGATGGTTACAATG 59.724 37.037 5.07 7.58 40.06 2.82
1414 1706 6.515272 AGTCATTCCATTTGTGATGGTTAC 57.485 37.500 5.07 1.06 40.06 2.50
1419 1711 8.875803 CCAAAAATAGTCATTCCATTTGTGATG 58.124 33.333 0.00 0.00 31.32 3.07
1468 1760 9.657121 GACAACTTTAATTCATATAGAAGCAGC 57.343 33.333 0.00 0.00 40.15 5.25
1506 1802 5.977821 ATTAGCTAGTTAGGCTCCCTTTT 57.022 39.130 0.00 0.00 40.74 2.27
1579 1876 2.200899 CACACACACACACAGAATCGA 58.799 47.619 0.00 0.00 0.00 3.59
1585 1882 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1614 1911 1.272784 TATGAGTAATTCCGCGCGCG 61.273 55.000 43.73 43.73 39.44 6.86
1616 1913 5.271625 AGTATATATGAGTAATTCCGCGCG 58.728 41.667 25.67 25.67 0.00 6.86
1618 1915 6.792326 TGGAGTATATATGAGTAATTCCGCG 58.208 40.000 0.00 0.00 0.00 6.46
1650 2270 8.823220 ACAACTTTCCCAATAGTAGCATATTT 57.177 30.769 0.00 0.00 0.00 1.40
1716 2347 2.484264 GCTAATTTGAGAAGGTGTGCGT 59.516 45.455 0.00 0.00 0.00 5.24
1717 2348 2.483877 TGCTAATTTGAGAAGGTGTGCG 59.516 45.455 0.00 0.00 0.00 5.34
1837 2652 6.353602 CCCCAGGGTAATACTTGTCACTAAAT 60.354 42.308 4.22 0.00 0.00 1.40
1884 2699 7.829378 AGTTTGATAAGGACGTGATTAACTC 57.171 36.000 0.00 0.00 0.00 3.01
1940 2787 6.627087 ATTTGGTGTTCTCTAGATCCAGAA 57.373 37.500 0.00 0.00 0.00 3.02
2053 2900 3.828451 ACCACATAGGAATTATGCCATGC 59.172 43.478 0.00 0.00 42.46 4.06
2076 2931 8.669571 AGCACATGGGGATAAAAATATAGTACT 58.330 33.333 0.00 0.00 0.00 2.73
2080 2935 8.862325 TGTAGCACATGGGGATAAAAATATAG 57.138 34.615 0.00 0.00 0.00 1.31
2117 2972 9.925268 GAAATATGCTTTGCCATTAGAAATTTG 57.075 29.630 0.00 0.00 0.00 2.32
2214 3069 2.028748 ACATTTCATGAAACTGCTGCCC 60.029 45.455 22.71 0.00 32.51 5.36
2262 3117 3.945285 GCCCAAACTCCTTTATTCGATGA 59.055 43.478 0.00 0.00 0.00 2.92
2600 3455 8.084073 AGCATCAATTTCCCGAACATATTATTG 58.916 33.333 0.00 0.00 0.00 1.90
2612 3467 3.788333 ATGTGAAGCATCAATTTCCCG 57.212 42.857 0.00 0.00 37.30 5.14
2701 3571 9.528489 AAGGATTACAAAACCAGAAAGCTATAA 57.472 29.630 0.00 0.00 0.00 0.98
2702 3572 9.174166 GAAGGATTACAAAACCAGAAAGCTATA 57.826 33.333 0.00 0.00 0.00 1.31
2715 3585 9.311916 CAAGTTCACAAATGAAGGATTACAAAA 57.688 29.630 0.00 0.00 45.58 2.44
2757 3628 6.500041 TCCCAACAGAAATTACTTCAAAACG 58.500 36.000 0.00 0.00 36.40 3.60
2797 3668 9.379791 CTTTATTTAACTCAGTAGGAACCGATT 57.620 33.333 0.00 0.00 0.00 3.34
2863 3734 6.086222 GCCTGTATTGTAACATTGTGTCAAG 58.914 40.000 10.89 1.14 0.00 3.02
2885 3756 5.865552 GTCAACATATGCCAATTGATATGCC 59.134 40.000 19.61 8.07 36.42 4.40
2909 3780 5.496556 TGTACTGTATGGGGATTTTGACTG 58.503 41.667 0.00 0.00 0.00 3.51
2953 3824 6.403878 TGTCTAGTACCCAACTGAAATAAGC 58.596 40.000 0.00 0.00 39.39 3.09
2954 3825 7.064728 GCTTGTCTAGTACCCAACTGAAATAAG 59.935 40.741 0.00 0.00 39.39 1.73
2955 3826 6.877322 GCTTGTCTAGTACCCAACTGAAATAA 59.123 38.462 0.00 0.00 39.39 1.40
2961 3832 3.678056 TGCTTGTCTAGTACCCAACTG 57.322 47.619 0.00 0.00 39.39 3.16
2966 3837 3.955650 TGTCTTGCTTGTCTAGTACCC 57.044 47.619 0.00 0.00 0.00 3.69
6794 16149 9.676861 CTATCATAAATAGGAAATCCAGATGCA 57.323 33.333 1.67 0.00 38.89 3.96
6810 16166 9.797642 TGAACCATGTAGATTGCTATCATAAAT 57.202 29.630 10.78 0.00 32.95 1.40
6843 16199 3.938334 GCTGTTTTTCTTTCCTTTTGGCA 59.062 39.130 0.00 0.00 40.12 4.92
6877 16234 7.880713 TCATAGTTCCAACATAACTTGCAGTAA 59.119 33.333 0.00 0.00 38.18 2.24
6878 16235 7.390823 TCATAGTTCCAACATAACTTGCAGTA 58.609 34.615 0.00 0.00 38.18 2.74
6900 16260 7.227156 GTCTTGGTCCAAGGTGAATATATCAT 58.773 38.462 27.79 0.00 41.33 2.45
6913 16273 2.872038 GCAGTGTAGGTCTTGGTCCAAG 60.872 54.545 23.69 23.69 42.25 3.61
6914 16274 1.071699 GCAGTGTAGGTCTTGGTCCAA 59.928 52.381 3.76 3.76 0.00 3.53
6921 16281 2.993899 CGAAAATCGCAGTGTAGGTCTT 59.006 45.455 0.00 0.00 31.14 3.01
6942 16302 1.432251 GCACATGCACATGGCTCTC 59.568 57.895 14.73 0.00 45.15 3.20
6943 16303 3.599584 GCACATGCACATGGCTCT 58.400 55.556 14.73 0.00 45.15 4.09
6955 16315 1.000612 TGTCCATGGGCATGCACAT 59.999 52.632 29.77 29.77 41.35 3.21
6956 16316 1.978080 GTGTCCATGGGCATGCACA 60.978 57.895 27.64 27.64 37.16 4.57
6957 16317 1.252904 AAGTGTCCATGGGCATGCAC 61.253 55.000 24.46 18.25 37.49 4.57
6958 16318 0.542467 AAAGTGTCCATGGGCATGCA 60.542 50.000 24.46 6.07 37.49 3.96
6959 16319 0.609662 AAAAGTGTCCATGGGCATGC 59.390 50.000 24.46 10.90 37.49 4.06
7014 16376 0.859232 CACCGATGTTATACAGGCGC 59.141 55.000 0.00 0.00 31.37 6.53
7032 16394 3.648067 AGAGTTTCATGGGTCAGAAGTCA 59.352 43.478 0.00 0.00 0.00 3.41
7040 16402 2.030805 GCACAACAGAGTTTCATGGGTC 60.031 50.000 0.00 0.00 0.00 4.46
7142 16504 0.179073 CGAAACTGGAGGCATCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
7180 16543 4.459337 AGGGTAAAAATAGAACAGCACAGC 59.541 41.667 0.00 0.00 0.00 4.40
7191 16554 8.335532 TCTCATGAACACAAGGGTAAAAATAG 57.664 34.615 0.00 0.00 0.00 1.73
7240 16611 2.030371 TGAGCCAAAAATGTGACTGCA 58.970 42.857 0.00 0.00 0.00 4.41
7246 16617 4.669197 GCGTACTAGTGAGCCAAAAATGTG 60.669 45.833 5.39 0.00 0.00 3.21
7284 16655 7.642071 TTCAGGTACTACGTGTAATGTTTTC 57.358 36.000 0.00 0.00 37.25 2.29
7342 17127 5.734855 TTTACTGAAGAACACAACAGAGC 57.265 39.130 0.00 0.00 34.88 4.09
7376 17161 3.193395 TGTCCACCAGTCCCATAGTAA 57.807 47.619 0.00 0.00 0.00 2.24
7378 17163 1.628846 GTTGTCCACCAGTCCCATAGT 59.371 52.381 0.00 0.00 0.00 2.12
7500 17287 2.363711 TATCATCACCGGCGGACTGC 62.364 60.000 35.78 0.00 45.38 4.40
7548 17335 8.706492 TGCATCAAGATTAATTTTCATGAACC 57.294 30.769 7.89 0.00 0.00 3.62
7561 17348 6.296087 CCTCCTTATAGGCTGCATCAAGATTA 60.296 42.308 0.50 0.00 34.61 1.75
7565 17353 3.326006 TCCTCCTTATAGGCTGCATCAAG 59.674 47.826 0.50 1.83 36.51 3.02
7600 17388 1.754226 GAACTGACAAAACCCCAAGCA 59.246 47.619 0.00 0.00 0.00 3.91
7621 17409 5.345702 CAATGAAATCGCCAAACTCATCAT 58.654 37.500 0.00 0.00 0.00 2.45
7687 17936 3.743521 ACACATGCTTCAGTTTCAGCTA 58.256 40.909 0.00 0.00 36.92 3.32
7688 17937 2.551459 GACACATGCTTCAGTTTCAGCT 59.449 45.455 0.00 0.00 36.92 4.24
7719 17968 0.191064 CCCAGGTCCATAGCTCCCTA 59.809 60.000 0.00 0.00 0.00 3.53
7751 18000 4.655649 TGAGGGCATTCTGCTTAGAAGATA 59.344 41.667 0.00 0.00 44.28 1.98
7758 18007 3.347216 GTCTTTGAGGGCATTCTGCTTA 58.653 45.455 0.00 0.00 44.28 3.09
7766 18015 1.550869 CCCTTTGGTCTTTGAGGGCAT 60.551 52.381 0.00 0.00 42.18 4.40
7771 18020 4.156739 GCTTCATACCCTTTGGTCTTTGAG 59.843 45.833 0.00 0.00 43.06 3.02
7772 18021 4.079253 GCTTCATACCCTTTGGTCTTTGA 58.921 43.478 0.00 0.00 43.06 2.69
7773 18022 4.082125 AGCTTCATACCCTTTGGTCTTTG 58.918 43.478 0.00 0.00 43.06 2.77
7785 18051 3.755378 CCCAATATCTGCAGCTTCATACC 59.245 47.826 9.47 0.00 0.00 2.73
7817 18083 1.919918 CACAGGCTTCTAGCTTCTCG 58.080 55.000 0.00 0.00 41.99 4.04
7822 18090 1.573108 TAAGGCACAGGCTTCTAGCT 58.427 50.000 9.18 0.00 45.21 3.32
7836 18112 3.314635 CCTGAAATCAGCTGACATAAGGC 59.685 47.826 20.97 5.16 42.47 4.35
7837 18113 4.521146 ACCTGAAATCAGCTGACATAAGG 58.479 43.478 23.82 23.82 42.47 2.69
7841 18117 4.560108 GCAAAACCTGAAATCAGCTGACAT 60.560 41.667 20.97 11.01 42.47 3.06
7842 18118 3.243501 GCAAAACCTGAAATCAGCTGACA 60.244 43.478 20.97 12.02 42.47 3.58
7844 18120 3.225104 AGCAAAACCTGAAATCAGCTGA 58.775 40.909 20.79 20.79 42.47 4.26
7845 18121 3.655276 AGCAAAACCTGAAATCAGCTG 57.345 42.857 7.63 7.63 42.47 4.24
7867 18143 5.804639 TGCACAACTCTATTACATTCACCT 58.195 37.500 0.00 0.00 0.00 4.00
7868 18144 5.447818 GCTGCACAACTCTATTACATTCACC 60.448 44.000 0.00 0.00 0.00 4.02
7887 18164 1.541147 GTGCCTCAAAACTATGCTGCA 59.459 47.619 4.13 4.13 0.00 4.41
7891 18168 0.451783 CGGGTGCCTCAAAACTATGC 59.548 55.000 0.00 0.00 0.00 3.14
7895 18184 4.157607 CACGGGTGCCTCAAAACT 57.842 55.556 0.00 0.00 0.00 2.66
7927 18217 3.706086 AGCCCAAACAGACATTTTCAGTT 59.294 39.130 0.00 0.00 35.55 3.16
7928 18218 3.068590 CAGCCCAAACAGACATTTTCAGT 59.931 43.478 0.00 0.00 0.00 3.41
7929 18219 3.318839 TCAGCCCAAACAGACATTTTCAG 59.681 43.478 0.00 0.00 0.00 3.02
7930 18220 3.295093 TCAGCCCAAACAGACATTTTCA 58.705 40.909 0.00 0.00 0.00 2.69
7931 18221 4.320608 TTCAGCCCAAACAGACATTTTC 57.679 40.909 0.00 0.00 0.00 2.29
7932 18222 4.751767 TTTCAGCCCAAACAGACATTTT 57.248 36.364 0.00 0.00 0.00 1.82
7933 18223 4.751767 TTTTCAGCCCAAACAGACATTT 57.248 36.364 0.00 0.00 0.00 2.32
7934 18224 4.634199 CATTTTCAGCCCAAACAGACATT 58.366 39.130 0.00 0.00 0.00 2.71
7935 18225 3.555586 GCATTTTCAGCCCAAACAGACAT 60.556 43.478 0.00 0.00 0.00 3.06
7936 18226 2.224018 GCATTTTCAGCCCAAACAGACA 60.224 45.455 0.00 0.00 0.00 3.41
7937 18227 2.407090 GCATTTTCAGCCCAAACAGAC 58.593 47.619 0.00 0.00 0.00 3.51
7938 18228 1.344114 GGCATTTTCAGCCCAAACAGA 59.656 47.619 0.00 0.00 46.50 3.41
7939 18229 1.799544 GGCATTTTCAGCCCAAACAG 58.200 50.000 0.00 0.00 46.50 3.16
7986 18277 3.323136 GTGGCTAGCACGATCGCG 61.323 66.667 18.24 6.95 44.79 5.87
8020 18312 8.760569 CGCATCTATACAAACACACATTATGTA 58.239 33.333 0.00 0.00 40.64 2.29
8021 18313 7.630026 CGCATCTATACAAACACACATTATGT 58.370 34.615 0.00 0.00 44.81 2.29
8026 18318 3.001228 CGCGCATCTATACAAACACACAT 59.999 43.478 8.75 0.00 0.00 3.21
8028 18320 2.347452 ACGCGCATCTATACAAACACAC 59.653 45.455 5.73 0.00 0.00 3.82
8029 18321 2.612604 ACGCGCATCTATACAAACACA 58.387 42.857 5.73 0.00 0.00 3.72
8030 18322 3.651562 AACGCGCATCTATACAAACAC 57.348 42.857 5.73 0.00 0.00 3.32
8031 18323 4.426416 AGTAACGCGCATCTATACAAACA 58.574 39.130 5.73 0.00 0.00 2.83
8032 18324 6.686130 ATAGTAACGCGCATCTATACAAAC 57.314 37.500 5.73 0.00 0.00 2.93
8033 18325 7.703298 AAATAGTAACGCGCATCTATACAAA 57.297 32.000 5.73 0.00 0.00 2.83
8039 18331 6.210796 ACACATAAATAGTAACGCGCATCTA 58.789 36.000 5.73 6.61 0.00 1.98
8041 18333 5.324739 ACACATAAATAGTAACGCGCATC 57.675 39.130 5.73 0.00 0.00 3.91
8042 18334 5.277154 GGAACACATAAATAGTAACGCGCAT 60.277 40.000 5.73 0.00 0.00 4.73
8091 18445 3.369175 GGGGAGCATTCAATTCTTTCCT 58.631 45.455 0.00 0.00 0.00 3.36
8092 18446 2.099756 CGGGGAGCATTCAATTCTTTCC 59.900 50.000 0.00 0.00 0.00 3.13
8096 18450 1.408822 GGTCGGGGAGCATTCAATTCT 60.409 52.381 0.00 0.00 0.00 2.40
8113 18467 1.087771 CGTTCACATAAGGGGCGGTC 61.088 60.000 0.00 0.00 0.00 4.79
8118 18472 2.332063 AGCATCGTTCACATAAGGGG 57.668 50.000 0.00 0.00 0.00 4.79
8122 18476 3.950397 AGGGAAAGCATCGTTCACATAA 58.050 40.909 0.00 0.00 30.34 1.90
8124 18478 2.489329 CAAGGGAAAGCATCGTTCACAT 59.511 45.455 0.00 0.00 30.34 3.21
8131 18485 8.251026 TCTATATATGTACAAGGGAAAGCATCG 58.749 37.037 0.00 0.00 0.00 3.84
8133 18487 8.322091 GGTCTATATATGTACAAGGGAAAGCAT 58.678 37.037 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.