Multiple sequence alignment - TraesCS5B01G420100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G420100 chr5B 100.000 4010 0 0 1 4010 595656508 595660517 0.000000e+00 7406.0
1 TraesCS5B01G420100 chr5B 85.714 1498 156 39 1520 2992 378815067 378816531 0.000000e+00 1528.0
2 TraesCS5B01G420100 chr5B 91.429 105 8 1 3480 3584 700333609 700333712 4.180000e-30 143.0
3 TraesCS5B01G420100 chr5B 100.000 28 0 0 3656 3683 610376265 610376292 7.000000e-03 52.8
4 TraesCS5B01G420100 chr5A 90.360 3579 187 49 1 3509 606157221 606160711 0.000000e+00 4553.0
5 TraesCS5B01G420100 chr5A 86.141 1573 160 41 1523 3063 430247852 430246306 0.000000e+00 1644.0
6 TraesCS5B01G420100 chr5A 78.856 752 105 37 1391 2106 566632367 566631634 3.650000e-125 459.0
7 TraesCS5B01G420100 chr5D 94.680 1673 67 10 1845 3503 484573809 484575473 0.000000e+00 2577.0
8 TraesCS5B01G420100 chr5D 84.686 1306 146 37 1776 3060 326368929 326370201 0.000000e+00 1254.0
9 TraesCS5B01G420100 chr5D 90.725 690 34 9 844 1515 484572432 484573109 0.000000e+00 893.0
10 TraesCS5B01G420100 chr5D 95.415 458 19 2 1391 1847 484573134 484573590 0.000000e+00 728.0
11 TraesCS5B01G420100 chr5D 81.604 723 44 38 156 841 484571667 484572337 2.140000e-142 516.0
12 TraesCS5B01G420100 chr5D 92.000 150 8 3 3590 3736 484575496 484575644 1.460000e-49 207.0
13 TraesCS5B01G420100 chr5D 85.789 190 17 9 3770 3951 484576193 484576380 4.090000e-45 193.0
14 TraesCS5B01G420100 chr5D 83.333 126 15 6 1271 1393 326368362 326368484 1.180000e-20 111.0
15 TraesCS5B01G420100 chr6D 80.601 732 102 30 1391 2106 291624586 291625293 2.740000e-146 529.0
16 TraesCS5B01G420100 chr7B 79.484 736 109 25 1391 2106 7734922 7735635 6.030000e-133 484.0
17 TraesCS5B01G420100 chr7B 93.617 94 5 1 3492 3584 90139373 90139280 5.400000e-29 139.0
18 TraesCS5B01G420100 chr3D 79.508 732 110 30 1391 2106 507636317 507637024 6.030000e-133 484.0
19 TraesCS5B01G420100 chr3D 93.617 94 5 1 3492 3584 489233038 489232945 5.400000e-29 139.0
20 TraesCS5B01G420100 chr3D 95.775 71 3 0 2447 2517 404558969 404558899 9.110000e-22 115.0
21 TraesCS5B01G420100 chr2B 84.000 500 70 6 2515 3009 55913159 55913653 4.690000e-129 472.0
22 TraesCS5B01G420100 chr2B 81.818 495 80 8 2517 3006 55923785 55924274 1.340000e-109 407.0
23 TraesCS5B01G420100 chr2B 100.000 28 0 0 3656 3683 152507657 152507630 7.000000e-03 52.8
24 TraesCS5B01G420100 chr2A 83.567 499 73 7 2515 3008 36672845 36672351 3.650000e-125 459.0
25 TraesCS5B01G420100 chr2A 80.677 502 76 15 2515 3009 27345115 27344628 1.760000e-98 370.0
26 TraesCS5B01G420100 chr4A 78.867 724 89 31 1391 2106 716529738 716529071 7.960000e-117 431.0
27 TraesCS5B01G420100 chr4A 77.175 793 110 38 1289 2042 594021819 594022579 2.900000e-106 396.0
28 TraesCS5B01G420100 chr4A 93.617 94 5 1 3492 3584 1988987 1988894 5.400000e-29 139.0
29 TraesCS5B01G420100 chr4A 94.366 71 4 0 2447 2517 208812057 208811987 4.240000e-20 110.0
30 TraesCS5B01G420100 chr2D 82.016 506 75 11 2512 3009 33878222 33878719 2.230000e-112 416.0
31 TraesCS5B01G420100 chr1A 78.603 673 98 32 1391 2042 554113124 554112477 1.740000e-108 403.0
32 TraesCS5B01G420100 chr1A 93.617 94 5 1 3492 3584 401930133 401930040 5.400000e-29 139.0
33 TraesCS5B01G420100 chr3B 86.111 396 25 6 515 889 242898204 242897818 2.250000e-107 399.0
34 TraesCS5B01G420100 chr7D 93.617 94 5 1 3492 3584 159174534 159174441 5.400000e-29 139.0
35 TraesCS5B01G420100 chr4D 93.617 94 5 1 3492 3584 414548603 414548696 5.400000e-29 139.0
36 TraesCS5B01G420100 chr4B 93.617 94 5 1 3492 3584 178963478 178963385 5.400000e-29 139.0
37 TraesCS5B01G420100 chr1B 93.617 94 5 1 3492 3584 402895853 402895946 5.400000e-29 139.0
38 TraesCS5B01G420100 chr3A 95.775 71 3 0 2447 2517 402138391 402138461 9.110000e-22 115.0
39 TraesCS5B01G420100 chr6A 92.958 71 5 0 2447 2517 234140372 234140442 1.970000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G420100 chr5B 595656508 595660517 4009 False 7406.000000 7406 100.0000 1 4010 1 chr5B.!!$F2 4009
1 TraesCS5B01G420100 chr5B 378815067 378816531 1464 False 1528.000000 1528 85.7140 1520 2992 1 chr5B.!!$F1 1472
2 TraesCS5B01G420100 chr5A 606157221 606160711 3490 False 4553.000000 4553 90.3600 1 3509 1 chr5A.!!$F1 3508
3 TraesCS5B01G420100 chr5A 430246306 430247852 1546 True 1644.000000 1644 86.1410 1523 3063 1 chr5A.!!$R1 1540
4 TraesCS5B01G420100 chr5A 566631634 566632367 733 True 459.000000 459 78.8560 1391 2106 1 chr5A.!!$R2 715
5 TraesCS5B01G420100 chr5D 484571667 484576380 4713 False 852.333333 2577 90.0355 156 3951 6 chr5D.!!$F2 3795
6 TraesCS5B01G420100 chr5D 326368362 326370201 1839 False 682.500000 1254 84.0095 1271 3060 2 chr5D.!!$F1 1789
7 TraesCS5B01G420100 chr6D 291624586 291625293 707 False 529.000000 529 80.6010 1391 2106 1 chr6D.!!$F1 715
8 TraesCS5B01G420100 chr7B 7734922 7735635 713 False 484.000000 484 79.4840 1391 2106 1 chr7B.!!$F1 715
9 TraesCS5B01G420100 chr3D 507636317 507637024 707 False 484.000000 484 79.5080 1391 2106 1 chr3D.!!$F1 715
10 TraesCS5B01G420100 chr4A 716529071 716529738 667 True 431.000000 431 78.8670 1391 2106 1 chr4A.!!$R3 715
11 TraesCS5B01G420100 chr4A 594021819 594022579 760 False 396.000000 396 77.1750 1289 2042 1 chr4A.!!$F1 753
12 TraesCS5B01G420100 chr1A 554112477 554113124 647 True 403.000000 403 78.6030 1391 2042 1 chr1A.!!$R2 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 246 0.391966 CGGGCTAGGGTTAAGTAGGC 59.608 60.0 0.0 5.02 40.29 3.93 F
1208 1382 0.179067 AGAAACAAACCGTCTCCGCA 60.179 50.0 0.0 0.00 0.00 5.69 F
2257 3025 0.742281 CAAGGGAGAGGTGTGCATCG 60.742 60.0 0.0 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2901 0.039035 TCCCAAGTTTAGGCGCCAAT 59.961 50.000 31.54 12.06 0.00 3.16 R
2426 3197 2.103432 TGTGCCTGACCTTTTTAGACGA 59.897 45.455 0.00 0.00 0.00 4.20 R
3984 5292 0.039911 ACAACGGCCTCCTCTAGAGT 59.960 55.000 18.42 0.00 41.47 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.263100 CATTAGTAAGAAATGCCTATGTGCA 57.737 36.000 0.00 0.00 46.94 4.57
75 76 3.323691 ACGGAGAAATTTTGGGGAAAAGG 59.676 43.478 0.00 0.00 0.00 3.11
197 199 1.612442 GAGGATAGGCCGGCCCATA 60.612 63.158 41.72 28.52 43.43 2.74
226 228 2.825836 GGTGCAGAAGGCCCATCG 60.826 66.667 0.00 0.00 43.89 3.84
244 246 0.391966 CGGGCTAGGGTTAAGTAGGC 59.608 60.000 0.00 5.02 40.29 3.93
389 408 1.732809 GCTTAGTTTGTTCCTCGCCTC 59.267 52.381 0.00 0.00 0.00 4.70
390 409 2.347731 CTTAGTTTGTTCCTCGCCTCC 58.652 52.381 0.00 0.00 0.00 4.30
411 430 2.026542 CGCTCCCCCTTTTACCTTAACT 60.027 50.000 0.00 0.00 0.00 2.24
412 431 3.618351 GCTCCCCCTTTTACCTTAACTC 58.382 50.000 0.00 0.00 0.00 3.01
413 432 3.624205 GCTCCCCCTTTTACCTTAACTCC 60.624 52.174 0.00 0.00 0.00 3.85
414 433 2.573009 TCCCCCTTTTACCTTAACTCCG 59.427 50.000 0.00 0.00 0.00 4.63
423 442 0.463833 CCTTAACTCCGTCCATGGGC 60.464 60.000 13.02 9.73 0.00 5.36
531 553 3.209097 AACGCCGTGCTTGCACTT 61.209 55.556 21.17 7.92 0.00 3.16
619 648 4.155826 CGAGTTTCTTTTATGCCATGTCCA 59.844 41.667 0.00 0.00 0.00 4.02
621 650 5.969423 AGTTTCTTTTATGCCATGTCCATG 58.031 37.500 0.14 0.14 38.51 3.66
719 769 1.656429 GCATAATACTTTGGCGACGCG 60.656 52.381 14.61 3.53 0.00 6.01
738 788 3.308595 CGCGTGCCTCTGTTTGAAATATA 59.691 43.478 0.00 0.00 0.00 0.86
739 789 4.024893 CGCGTGCCTCTGTTTGAAATATAT 60.025 41.667 0.00 0.00 0.00 0.86
741 791 5.682862 GCGTGCCTCTGTTTGAAATATATTG 59.317 40.000 0.00 0.00 0.00 1.90
743 793 6.183360 CGTGCCTCTGTTTGAAATATATTGGT 60.183 38.462 0.00 0.00 0.00 3.67
744 794 7.011950 CGTGCCTCTGTTTGAAATATATTGGTA 59.988 37.037 0.00 0.00 0.00 3.25
745 795 8.129211 GTGCCTCTGTTTGAAATATATTGGTAC 58.871 37.037 0.00 0.00 0.00 3.34
782 836 0.450583 ATGCATGCTTCGTTCTGCAG 59.549 50.000 20.33 7.63 46.67 4.41
889 1039 6.183360 CCAGTACAGCTTCTTTGATTAGTTCG 60.183 42.308 0.00 0.00 0.00 3.95
906 1056 0.737367 TCGTCGCCAAGATTCAGCAG 60.737 55.000 0.00 0.00 0.00 4.24
907 1057 1.427020 GTCGCCAAGATTCAGCAGC 59.573 57.895 0.00 0.00 0.00 5.25
908 1058 1.003476 TCGCCAAGATTCAGCAGCA 60.003 52.632 0.00 0.00 0.00 4.41
1032 1185 1.554160 AGCTCTTGGACTGTCAGATGG 59.446 52.381 6.91 0.00 0.00 3.51
1043 1196 1.355381 TGTCAGATGGGCAAGATGGTT 59.645 47.619 0.00 0.00 0.00 3.67
1076 1229 2.983030 AGGAACATGCGCGCCAAA 60.983 55.556 30.77 11.06 0.00 3.28
1154 1328 4.161333 CCTTTTCTATTTCAGCTGTTGCG 58.839 43.478 14.67 0.17 45.42 4.85
1161 1335 6.086222 TCTATTTCAGCTGTTGCGAAATTTC 58.914 36.000 14.67 8.20 43.02 2.17
1162 1336 2.704725 TCAGCTGTTGCGAAATTTCC 57.295 45.000 14.67 6.21 45.42 3.13
1163 1337 2.229792 TCAGCTGTTGCGAAATTTCCT 58.770 42.857 14.67 0.00 45.42 3.36
1164 1338 2.622942 TCAGCTGTTGCGAAATTTCCTT 59.377 40.909 14.67 0.00 45.42 3.36
1165 1339 3.068024 TCAGCTGTTGCGAAATTTCCTTT 59.932 39.130 14.67 0.00 45.42 3.11
1196 1370 7.704472 CAGTTTAATTTGCAGTACCAGAAACAA 59.296 33.333 0.00 0.00 0.00 2.83
1208 1382 0.179067 AGAAACAAACCGTCTCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
1222 1397 7.159372 ACCGTCTCCGCAGAATTATTATAAAT 58.841 34.615 0.00 0.00 0.00 1.40
1313 1488 6.036577 TCTTCCAGCAATTTCCCAAATTAC 57.963 37.500 0.00 0.00 38.97 1.89
1356 1538 1.798813 GTGTACTTTGGAGCCGAGTTG 59.201 52.381 0.00 0.00 0.00 3.16
1368 1550 2.010817 CGAGTTGCACGCAAAAGGC 61.011 57.895 5.94 0.00 37.70 4.35
1429 1635 7.864379 ACTTGCAAATCTTGACATTAGTTTCTG 59.136 33.333 0.00 0.00 0.00 3.02
1783 2275 4.439153 CCATTGTGTATGTGGTGAGAATGC 60.439 45.833 0.00 0.00 31.99 3.56
1877 2620 1.818642 ATGACTTTCTGAGCACCAGC 58.181 50.000 1.69 0.00 42.62 4.85
2115 2874 9.606631 GTTGAGAACTACAAATCCATAGAATCT 57.393 33.333 0.00 0.00 0.00 2.40
2257 3025 0.742281 CAAGGGAGAGGTGTGCATCG 60.742 60.000 0.00 0.00 0.00 3.84
2276 3044 5.350365 GCATCGTTATAGACAAGTTGGAACA 59.650 40.000 7.96 0.00 0.00 3.18
2296 3067 7.400339 TGGAACATAGGACATAGATAATCCCTC 59.600 40.741 0.00 0.00 32.47 4.30
2297 3068 7.621683 GGAACATAGGACATAGATAATCCCTCT 59.378 40.741 0.00 0.00 32.47 3.69
2316 3087 6.155737 TCCCTCTAGCTTTAATTCCGTAACTT 59.844 38.462 0.00 0.00 0.00 2.66
2317 3088 7.342799 TCCCTCTAGCTTTAATTCCGTAACTTA 59.657 37.037 0.00 0.00 0.00 2.24
2426 3197 2.195741 ACATGATGCACTGTGCTCTT 57.804 45.000 30.43 19.71 45.31 2.85
2676 3450 5.615925 AACAACTATACTTCCTGCCCTAG 57.384 43.478 0.00 0.00 0.00 3.02
2767 3542 6.422776 AATGTGACGAATAATCCAGTTGAC 57.577 37.500 0.00 0.00 0.00 3.18
2876 3652 5.071250 ACCTATTTGCCACACTAATCCGATA 59.929 40.000 0.00 0.00 0.00 2.92
3021 3804 4.141937 TGAGTGAATAACGCAGAAGGCTAT 60.142 41.667 0.00 0.00 41.67 2.97
3028 3811 2.205074 ACGCAGAAGGCTATTCATTCG 58.795 47.619 0.00 6.95 40.19 3.34
3076 3859 0.816825 GGTGCACCTGATGATCGCAT 60.817 55.000 29.12 0.00 37.47 4.73
3190 3973 2.229675 TCTGCATCTGTATTGAGGCG 57.770 50.000 0.00 0.00 45.37 5.52
3223 4007 9.803130 CTATCAGACATTATTAGTGCGAAATTG 57.197 33.333 0.00 0.00 0.00 2.32
3242 4026 1.937223 TGTTGGAGCAACGTGTGTTAG 59.063 47.619 0.00 0.00 46.13 2.34
3257 4041 7.190871 ACGTGTGTTAGGAGTATTTTGTTTTG 58.809 34.615 0.00 0.00 0.00 2.44
3258 4042 6.141685 CGTGTGTTAGGAGTATTTTGTTTTGC 59.858 38.462 0.00 0.00 0.00 3.68
3279 4063 7.759489 TTGCTATTGTTGTTAGTCCTTGATT 57.241 32.000 0.00 0.00 0.00 2.57
3280 4064 7.377766 TGCTATTGTTGTTAGTCCTTGATTC 57.622 36.000 0.00 0.00 0.00 2.52
3335 4119 4.014406 GGTTTAAGTCTGGTTACCATGGG 58.986 47.826 18.09 0.00 30.82 4.00
3367 4151 5.268118 TCTTCTGAATCTGCATATCGTGT 57.732 39.130 0.00 0.00 0.00 4.49
3368 4152 5.045872 TCTTCTGAATCTGCATATCGTGTG 58.954 41.667 0.00 0.00 0.00 3.82
3369 4153 3.126073 TCTGAATCTGCATATCGTGTGC 58.874 45.455 0.00 3.19 42.81 4.57
3403 4189 7.534239 GTCGTCTTTTCTTTTGTCCATATGTTC 59.466 37.037 1.24 0.00 0.00 3.18
3451 4237 0.594796 GCAGCTTGTCCGGTGTTTTG 60.595 55.000 0.00 0.00 34.99 2.44
3452 4238 1.021202 CAGCTTGTCCGGTGTTTTGA 58.979 50.000 0.00 0.00 0.00 2.69
3460 4246 0.958091 CCGGTGTTTTGATGCTTGGA 59.042 50.000 0.00 0.00 0.00 3.53
3514 4300 9.975218 AATCATTTGTTTTATACAGTACTCCCT 57.025 29.630 0.00 0.00 38.19 4.20
3515 4301 9.614792 ATCATTTGTTTTATACAGTACTCCCTC 57.385 33.333 0.00 0.00 38.19 4.30
3516 4302 8.044908 TCATTTGTTTTATACAGTACTCCCTCC 58.955 37.037 0.00 0.00 38.19 4.30
3517 4303 5.587388 TGTTTTATACAGTACTCCCTCCG 57.413 43.478 0.00 0.00 31.68 4.63
3518 4304 5.018809 TGTTTTATACAGTACTCCCTCCGT 58.981 41.667 0.00 0.00 31.68 4.69
3520 4306 2.361643 ATACAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3521 4307 0.257039 TACAGTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
3522 4308 1.000019 CAGTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
3523 4309 0.613853 CAGTACTCCCTCCGTCCCAA 60.614 60.000 0.00 0.00 0.00 4.12
3524 4310 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3525 4311 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3526 4312 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3527 4313 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3528 4314 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3529 4315 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3530 4316 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3531 4317 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3532 4318 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3533 4319 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3534 4320 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3535 4321 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3536 4322 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3537 4323 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3538 4324 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3539 4325 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3540 4326 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3541 4327 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3542 4328 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3543 4329 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3544 4330 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3545 4331 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3566 4352 9.863845 TTGTCTAAATACGAATGTATCAAGTCA 57.136 29.630 0.00 0.00 40.42 3.41
3567 4353 9.297586 TGTCTAAATACGAATGTATCAAGTCAC 57.702 33.333 0.00 0.00 40.42 3.67
3568 4354 9.297586 GTCTAAATACGAATGTATCAAGTCACA 57.702 33.333 0.00 0.00 40.42 3.58
3575 4361 8.547967 ACGAATGTATCAAGTCACATTTTAGT 57.452 30.769 1.86 1.50 43.58 2.24
3576 4362 9.647797 ACGAATGTATCAAGTCACATTTTAGTA 57.352 29.630 1.86 0.00 43.58 1.82
3646 4433 3.008485 TGTGTAGCCCATGTGTCAATGTA 59.992 43.478 0.00 0.00 0.00 2.29
3724 4513 4.997395 AGCTCACGTGTCATTGTATTCTTT 59.003 37.500 16.51 0.00 0.00 2.52
3725 4514 6.163476 AGCTCACGTGTCATTGTATTCTTTA 58.837 36.000 16.51 0.00 0.00 1.85
3726 4515 6.311445 AGCTCACGTGTCATTGTATTCTTTAG 59.689 38.462 16.51 0.29 0.00 1.85
3728 4517 7.148639 GCTCACGTGTCATTGTATTCTTTAGAA 60.149 37.037 16.51 0.00 38.56 2.10
3744 5007 8.441312 TTCTTTAGAATGTTTTGTTACCGAGT 57.559 30.769 0.00 0.00 0.00 4.18
3778 5081 1.526686 TTGTGGTGGCTGAGCAGTG 60.527 57.895 6.82 0.00 30.97 3.66
3782 5085 2.111878 GTGGCTGAGCAGTGTGGT 59.888 61.111 6.82 0.00 0.00 4.16
3783 5086 1.371183 GTGGCTGAGCAGTGTGGTA 59.629 57.895 6.82 0.00 0.00 3.25
3801 5104 3.373748 TGGTATGTTTCGTGTGCATCATC 59.626 43.478 0.00 0.00 0.00 2.92
3803 5106 4.035558 GGTATGTTTCGTGTGCATCATCAT 59.964 41.667 0.00 0.00 0.00 2.45
3853 5156 3.251571 GAGTCGTTGGGTCAGTGATAAC 58.748 50.000 0.00 2.19 0.00 1.89
3858 5161 3.512680 GTTGGGTCAGTGATAACGAGAG 58.487 50.000 0.00 0.00 0.00 3.20
3859 5162 3.081710 TGGGTCAGTGATAACGAGAGA 57.918 47.619 0.00 0.00 0.00 3.10
3865 5173 6.100004 GGTCAGTGATAACGAGAGAAATTCA 58.900 40.000 0.00 0.00 0.00 2.57
3868 5176 6.758416 TCAGTGATAACGAGAGAAATTCATGG 59.242 38.462 0.00 0.00 0.00 3.66
3872 5180 2.271800 ACGAGAGAAATTCATGGCGAC 58.728 47.619 0.00 0.00 0.00 5.19
3884 5192 2.202810 GGCGACCTCTACAGCTGC 60.203 66.667 15.27 0.00 0.00 5.25
3888 5196 1.335506 GCGACCTCTACAGCTGCTATC 60.336 57.143 15.27 2.34 0.00 2.08
3890 5198 2.621055 CGACCTCTACAGCTGCTATCTT 59.379 50.000 15.27 0.00 0.00 2.40
3894 5202 3.636300 CCTCTACAGCTGCTATCTTGACT 59.364 47.826 15.27 0.00 0.00 3.41
3897 5205 3.523606 ACAGCTGCTATCTTGACTCTG 57.476 47.619 15.27 0.00 0.00 3.35
3898 5206 2.203401 CAGCTGCTATCTTGACTCTGC 58.797 52.381 0.00 0.00 0.00 4.26
3902 5210 3.678252 GCTGCTATCTTGACTCTGCTGAA 60.678 47.826 0.00 0.00 0.00 3.02
3910 5218 3.986996 TGACTCTGCTGAAATCCATGA 57.013 42.857 0.00 0.00 0.00 3.07
3941 5249 4.796314 TTGGCAAAGGCAAATGGC 57.204 50.000 0.00 0.00 44.79 4.40
3950 5258 4.664062 GCAAATGGCCTGCCTAGA 57.336 55.556 9.97 0.00 36.11 2.43
3951 5259 2.110296 GCAAATGGCCTGCCTAGAC 58.890 57.895 9.97 0.00 36.11 2.59
3952 5260 0.394899 GCAAATGGCCTGCCTAGACT 60.395 55.000 9.97 0.00 36.11 3.24
3953 5261 1.673168 CAAATGGCCTGCCTAGACTC 58.327 55.000 9.97 0.00 36.94 3.36
3954 5262 1.211457 CAAATGGCCTGCCTAGACTCT 59.789 52.381 9.97 0.00 36.94 3.24
3955 5263 2.435805 CAAATGGCCTGCCTAGACTCTA 59.564 50.000 9.97 0.00 36.94 2.43
3956 5264 2.008242 ATGGCCTGCCTAGACTCTAG 57.992 55.000 9.97 6.14 36.94 2.43
3957 5265 0.927029 TGGCCTGCCTAGACTCTAGA 59.073 55.000 13.90 0.00 36.94 2.43
3958 5266 1.133637 TGGCCTGCCTAGACTCTAGAG 60.134 57.143 18.49 18.49 36.94 2.43
3959 5267 1.616159 GCCTGCCTAGACTCTAGAGG 58.384 60.000 23.50 13.57 0.00 3.69
3960 5268 1.144093 GCCTGCCTAGACTCTAGAGGA 59.856 57.143 23.50 7.78 31.45 3.71
3961 5269 2.814097 GCCTGCCTAGACTCTAGAGGAG 60.814 59.091 23.50 16.04 46.87 3.69
3962 5270 2.224769 CCTGCCTAGACTCTAGAGGAGG 60.225 59.091 23.50 23.58 45.83 4.30
3966 5274 4.611119 GACTCTAGAGGAGGCCCC 57.389 66.667 23.50 0.00 44.14 5.80
3974 5282 3.256960 AGGAGGCCCCTCGCAAAA 61.257 61.111 0.00 0.00 43.31 2.44
3975 5283 2.282887 GGAGGCCCCTCGCAAAAA 60.283 61.111 0.00 0.00 43.59 1.94
4000 5308 4.991024 GACTCTAGAGGAGGCCGT 57.009 61.111 23.50 1.26 44.14 5.68
4001 5309 3.194419 GACTCTAGAGGAGGCCGTT 57.806 57.895 23.50 0.00 44.14 4.44
4002 5310 0.741915 GACTCTAGAGGAGGCCGTTG 59.258 60.000 23.50 0.00 44.14 4.10
4003 5311 0.039911 ACTCTAGAGGAGGCCGTTGT 59.960 55.000 23.50 0.00 45.83 3.32
4004 5312 0.457851 CTCTAGAGGAGGCCGTTGTG 59.542 60.000 12.27 0.00 38.35 3.33
4005 5313 1.153549 CTAGAGGAGGCCGTTGTGC 60.154 63.158 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.775701 TCCCCAAAATTTCTCCGTCATTTTA 59.224 36.000 0.00 0.00 30.60 1.52
52 53 4.556233 CTTTTCCCCAAAATTTCTCCGTC 58.444 43.478 0.00 0.00 30.91 4.79
58 59 6.316640 TCGTTTTTCCTTTTCCCCAAAATTTC 59.683 34.615 0.00 0.00 30.91 2.17
59 60 6.181190 TCGTTTTTCCTTTTCCCCAAAATTT 58.819 32.000 0.00 0.00 30.91 1.82
60 61 5.746284 TCGTTTTTCCTTTTCCCCAAAATT 58.254 33.333 0.00 0.00 30.91 1.82
61 62 5.360649 TCGTTTTTCCTTTTCCCCAAAAT 57.639 34.783 0.00 0.00 30.91 1.82
226 228 0.763652 GGCCTACTTAACCCTAGCCC 59.236 60.000 0.00 0.00 32.68 5.19
244 246 2.963371 GGCGAGGGCTCTATACGG 59.037 66.667 0.00 0.00 39.81 4.02
373 392 1.004918 CGGAGGCGAGGAACAAACT 60.005 57.895 0.00 0.00 0.00 2.66
389 408 0.913924 TAAGGTAAAAGGGGGAGCGG 59.086 55.000 0.00 0.00 0.00 5.52
390 409 2.026542 AGTTAAGGTAAAAGGGGGAGCG 60.027 50.000 0.00 0.00 0.00 5.03
411 430 3.080765 ACGATGCCCATGGACGGA 61.081 61.111 15.22 0.00 0.00 4.69
412 431 2.588877 GACGATGCCCATGGACGG 60.589 66.667 15.22 0.00 0.00 4.79
413 432 1.153369 AAGACGATGCCCATGGACG 60.153 57.895 15.22 15.14 0.00 4.79
414 433 0.815615 GGAAGACGATGCCCATGGAC 60.816 60.000 15.22 0.55 0.00 4.02
423 442 0.674581 TTGCAGCCAGGAAGACGATG 60.675 55.000 0.00 0.00 0.00 3.84
590 619 8.686334 ACATGGCATAAAAGAAACTCGAAATAT 58.314 29.630 0.00 0.00 0.00 1.28
619 648 0.251341 GTGGCTGAACCTTCCACCAT 60.251 55.000 0.00 0.00 43.27 3.55
621 650 4.081050 GTGGCTGAACCTTCCACC 57.919 61.111 0.00 0.00 43.27 4.61
670 720 3.533720 CCATCCATGGCAAGGCTG 58.466 61.111 6.96 4.61 41.75 4.85
719 769 7.100458 ACCAATATATTTCAAACAGAGGCAC 57.900 36.000 0.00 0.00 0.00 5.01
739 789 9.737427 CATAATAACAACAAACAAGTGTACCAA 57.263 29.630 0.00 0.00 0.00 3.67
741 791 7.863375 TGCATAATAACAACAAACAAGTGTACC 59.137 33.333 0.00 0.00 0.00 3.34
743 793 9.404348 CATGCATAATAACAACAAACAAGTGTA 57.596 29.630 0.00 0.00 0.00 2.90
744 794 7.095691 GCATGCATAATAACAACAAACAAGTGT 60.096 33.333 14.21 0.00 0.00 3.55
745 795 7.116662 AGCATGCATAATAACAACAAACAAGTG 59.883 33.333 21.98 0.00 0.00 3.16
789 843 1.829222 CATGCCTGGCCTGAATTTCTT 59.171 47.619 17.80 0.00 0.00 2.52
791 845 0.179092 GCATGCCTGGCCTGAATTTC 60.179 55.000 25.39 5.58 0.00 2.17
792 846 0.616679 AGCATGCCTGGCCTGAATTT 60.617 50.000 25.39 6.53 0.00 1.82
795 849 2.044650 GAGCATGCCTGGCCTGAA 60.045 61.111 25.39 3.33 0.00 3.02
797 851 1.945354 CTTTGAGCATGCCTGGCCTG 61.945 60.000 17.53 17.94 0.00 4.85
798 852 1.681327 CTTTGAGCATGCCTGGCCT 60.681 57.895 17.53 5.86 0.00 5.19
799 853 1.538687 AACTTTGAGCATGCCTGGCC 61.539 55.000 17.53 0.00 0.00 5.36
800 854 1.135286 GTAACTTTGAGCATGCCTGGC 60.135 52.381 15.66 12.87 0.00 4.85
860 1006 3.926616 TCAAAGAAGCTGTACTGGTAGC 58.073 45.455 4.80 0.00 40.18 3.58
864 1010 6.183360 CGAACTAATCAAAGAAGCTGTACTGG 60.183 42.308 1.65 0.00 0.00 4.00
865 1011 6.366332 ACGAACTAATCAAAGAAGCTGTACTG 59.634 38.462 0.00 0.00 0.00 2.74
889 1039 1.300971 TGCTGCTGAATCTTGGCGAC 61.301 55.000 0.00 0.00 0.00 5.19
906 1056 1.061711 GATGATGACACAGAACGCTGC 59.938 52.381 0.00 0.00 46.26 5.25
908 1058 4.098501 TGATAGATGATGACACAGAACGCT 59.901 41.667 0.00 0.00 0.00 5.07
950 1103 2.577563 ACCATCCATCCATGTCAGACAA 59.422 45.455 7.50 0.00 0.00 3.18
1016 1169 0.325933 TGCCCATCTGACAGTCCAAG 59.674 55.000 1.59 0.00 0.00 3.61
1023 1176 0.994247 ACCATCTTGCCCATCTGACA 59.006 50.000 0.00 0.00 0.00 3.58
1161 1335 6.515832 ACTGCAAATTAAACTGAAGGAAAGG 58.484 36.000 0.00 0.00 0.00 3.11
1162 1336 7.595130 GGTACTGCAAATTAAACTGAAGGAAAG 59.405 37.037 0.00 0.00 0.00 2.62
1163 1337 7.068839 TGGTACTGCAAATTAAACTGAAGGAAA 59.931 33.333 0.00 0.00 0.00 3.13
1164 1338 6.547880 TGGTACTGCAAATTAAACTGAAGGAA 59.452 34.615 0.00 0.00 0.00 3.36
1165 1339 6.065374 TGGTACTGCAAATTAAACTGAAGGA 58.935 36.000 0.00 0.00 0.00 3.36
1208 1382 5.185056 GGGGTGCCGCATTTATAATAATTCT 59.815 40.000 0.00 0.00 0.00 2.40
1222 1397 0.107410 CTTATTGTAGGGGTGCCGCA 60.107 55.000 8.01 0.00 0.00 5.69
1313 1488 3.499537 TGATGCAGCACACTACTTGAAAG 59.500 43.478 0.00 0.00 0.00 2.62
1356 1538 3.037833 GCCAAGCCTTTTGCGTGC 61.038 61.111 0.00 0.00 46.55 5.34
1429 1635 0.892814 AAGCAGCAGAGCCTTCCAAC 60.893 55.000 0.00 0.00 34.23 3.77
1877 2620 8.313292 TGGAAAAGGTTTCAGATAATTTCCATG 58.687 33.333 11.79 0.00 45.49 3.66
1992 2741 5.769662 TGAGTGAGAACCATACTGCAAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
2133 2901 0.039035 TCCCAAGTTTAGGCGCCAAT 59.961 50.000 31.54 12.06 0.00 3.16
2257 3025 8.038944 TGTCCTATGTTCCAACTTGTCTATAAC 58.961 37.037 0.00 0.00 0.00 1.89
2276 3044 8.125042 AGCTAGAGGGATTATCTATGTCCTAT 57.875 38.462 0.00 0.00 32.55 2.57
2322 3093 8.811017 CAGATTCTCTACCACCTATATCAACAT 58.189 37.037 0.00 0.00 0.00 2.71
2426 3197 2.103432 TGTGCCTGACCTTTTTAGACGA 59.897 45.455 0.00 0.00 0.00 4.20
2676 3450 6.364976 GGCATACAAGTTATTGGTGTCAAAAC 59.635 38.462 0.00 0.00 40.97 2.43
2767 3542 3.764160 GATCCTGCCCTCCTTGCCG 62.764 68.421 0.00 0.00 0.00 5.69
2876 3652 2.884639 CCTTTCGGTCAGAAAACCATGT 59.115 45.455 0.00 0.00 46.98 3.21
3021 3804 2.635915 AGGACCAGTTACCACGAATGAA 59.364 45.455 0.00 0.00 0.00 2.57
3190 3973 9.092876 GCACTAATAATGTCTGATAGATAAGCC 57.907 37.037 0.00 0.00 0.00 4.35
3223 4007 1.263217 CCTAACACACGTTGCTCCAAC 59.737 52.381 0.00 0.00 40.54 3.77
3242 4026 8.587952 ACAACAATAGCAAAACAAAATACTCC 57.412 30.769 0.00 0.00 0.00 3.85
3257 4041 7.617041 AGAATCAAGGACTAACAACAATAGC 57.383 36.000 0.00 0.00 0.00 2.97
3258 4042 8.821894 GCTAGAATCAAGGACTAACAACAATAG 58.178 37.037 0.00 0.00 0.00 1.73
3279 4063 2.625314 CAATCATCTCGGGTCAGCTAGA 59.375 50.000 0.00 0.00 0.00 2.43
3280 4064 2.363680 ACAATCATCTCGGGTCAGCTAG 59.636 50.000 0.00 0.00 0.00 3.42
3345 4129 5.045872 CACACGATATGCAGATTCAGAAGA 58.954 41.667 0.00 0.00 0.00 2.87
3346 4130 4.318618 GCACACGATATGCAGATTCAGAAG 60.319 45.833 0.00 0.00 42.88 2.85
3394 4180 8.352942 GGCTACAGGATTAAAAAGAACATATGG 58.647 37.037 7.80 0.00 0.00 2.74
3403 4189 4.399303 CACAGGGGCTACAGGATTAAAAAG 59.601 45.833 0.00 0.00 0.00 2.27
3451 4237 1.063174 GCTCACGTGAATCCAAGCATC 59.937 52.381 20.49 0.00 0.00 3.91
3452 4238 1.089920 GCTCACGTGAATCCAAGCAT 58.910 50.000 20.49 0.00 0.00 3.79
3504 4290 0.613853 TTGGGACGGAGGGAGTACTG 60.614 60.000 0.00 0.00 0.00 2.74
3509 4295 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3510 4296 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3511 4297 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3512 4298 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3513 4299 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3514 4300 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3515 4301 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3516 4302 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3517 4303 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3518 4304 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3540 4326 9.863845 TGACTTGATACATTCGTATTTAGACAA 57.136 29.630 0.00 0.00 38.48 3.18
3541 4327 9.297586 GTGACTTGATACATTCGTATTTAGACA 57.702 33.333 0.00 0.00 38.48 3.41
3542 4328 9.297586 TGTGACTTGATACATTCGTATTTAGAC 57.702 33.333 0.00 0.00 38.48 2.59
3549 4335 9.647797 ACTAAAATGTGACTTGATACATTCGTA 57.352 29.630 0.00 0.00 44.32 3.43
3550 4336 8.547967 ACTAAAATGTGACTTGATACATTCGT 57.452 30.769 0.00 0.00 44.32 3.85
3583 4369 9.366216 GGTGATTTTAAAAGAGTGAACTTGTTT 57.634 29.630 6.79 0.00 0.00 2.83
3584 4370 8.527810 TGGTGATTTTAAAAGAGTGAACTTGTT 58.472 29.630 6.79 0.00 0.00 2.83
3585 4371 8.062065 TGGTGATTTTAAAAGAGTGAACTTGT 57.938 30.769 6.79 0.00 0.00 3.16
3586 4372 8.925161 TTGGTGATTTTAAAAGAGTGAACTTG 57.075 30.769 6.79 0.00 0.00 3.16
3625 4411 2.436417 ACATTGACACATGGGCTACAC 58.564 47.619 0.00 0.00 0.00 2.90
3626 4412 2.877097 ACATTGACACATGGGCTACA 57.123 45.000 0.00 0.00 0.00 2.74
3627 4413 5.835113 AAATACATTGACACATGGGCTAC 57.165 39.130 0.00 0.00 0.00 3.58
3628 4414 6.849085 AAAAATACATTGACACATGGGCTA 57.151 33.333 0.00 0.00 0.00 3.93
3629 4415 5.743636 AAAAATACATTGACACATGGGCT 57.256 34.783 0.00 0.00 0.00 5.19
3724 4513 6.512091 GCACAACTCGGTAACAAAACATTCTA 60.512 38.462 0.00 0.00 0.00 2.10
3725 4514 5.732247 GCACAACTCGGTAACAAAACATTCT 60.732 40.000 0.00 0.00 0.00 2.40
3726 4515 4.439776 GCACAACTCGGTAACAAAACATTC 59.560 41.667 0.00 0.00 0.00 2.67
3728 4517 3.630312 AGCACAACTCGGTAACAAAACAT 59.370 39.130 0.00 0.00 0.00 2.71
3740 5003 1.135046 CTGAGTCACAGCACAACTCG 58.865 55.000 0.00 0.00 41.84 4.18
3778 5081 2.482336 TGATGCACACGAAACATACCAC 59.518 45.455 0.00 0.00 0.00 4.16
3782 5085 5.816449 AATGATGATGCACACGAAACATA 57.184 34.783 0.00 0.00 0.00 2.29
3783 5086 4.707030 AATGATGATGCACACGAAACAT 57.293 36.364 0.00 0.00 0.00 2.71
3801 5104 6.980593 TCTTCACAATCAGTACCCAAAAATG 58.019 36.000 0.00 0.00 0.00 2.32
3803 5106 6.126409 ACTCTTCACAATCAGTACCCAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
3853 5156 1.594862 GGTCGCCATGAATTTCTCTCG 59.405 52.381 0.00 0.00 0.00 4.04
3858 5161 3.531538 TGTAGAGGTCGCCATGAATTTC 58.468 45.455 0.00 0.00 0.00 2.17
3859 5162 3.535561 CTGTAGAGGTCGCCATGAATTT 58.464 45.455 0.00 0.00 0.00 1.82
3865 5173 1.819229 CAGCTGTAGAGGTCGCCAT 59.181 57.895 5.25 0.00 0.00 4.40
3868 5176 0.671251 ATAGCAGCTGTAGAGGTCGC 59.329 55.000 16.64 0.00 0.00 5.19
3872 5180 3.636300 AGTCAAGATAGCAGCTGTAGAGG 59.364 47.826 16.64 0.00 0.00 3.69
3884 5192 5.668471 TGGATTTCAGCAGAGTCAAGATAG 58.332 41.667 0.00 0.00 0.00 2.08
3888 5196 4.259356 TCATGGATTTCAGCAGAGTCAAG 58.741 43.478 0.00 0.00 0.00 3.02
3890 5198 3.986996 TCATGGATTTCAGCAGAGTCA 57.013 42.857 0.00 0.00 0.00 3.41
3938 5246 0.927029 TCTAGAGTCTAGGCAGGCCA 59.073 55.000 23.96 3.19 38.92 5.36
3939 5247 1.616159 CTCTAGAGTCTAGGCAGGCC 58.384 60.000 23.96 0.97 0.00 5.19
3941 5249 2.224769 CCTCCTCTAGAGTCTAGGCAGG 60.225 59.091 23.96 22.55 41.47 4.85
3942 5250 2.814097 GCCTCCTCTAGAGTCTAGGCAG 60.814 59.091 32.74 15.75 42.10 4.85
3943 5251 1.144093 GCCTCCTCTAGAGTCTAGGCA 59.856 57.143 32.74 7.71 42.10 4.75
3944 5252 1.546998 GGCCTCCTCTAGAGTCTAGGC 60.547 61.905 31.33 31.33 41.47 3.93
3945 5253 1.074889 GGGCCTCCTCTAGAGTCTAGG 59.925 61.905 23.96 19.88 41.47 3.02
3947 5255 1.150872 GGGGCCTCCTCTAGAGTCTA 58.849 60.000 18.42 0.00 41.47 2.59
3948 5256 0.629270 AGGGGCCTCCTCTAGAGTCT 60.629 60.000 18.42 0.00 44.06 3.24
3949 5257 1.935191 AGGGGCCTCCTCTAGAGTC 59.065 63.158 18.42 4.77 44.06 3.36
3950 5258 4.215391 AGGGGCCTCCTCTAGAGT 57.785 61.111 18.42 0.00 44.06 3.24
3958 5266 2.282887 TTTTTGCGAGGGGCCTCC 60.283 61.111 0.00 0.00 42.61 4.30
3978 5286 2.498078 CGGCCTCCTCTAGAGTCTTTTT 59.502 50.000 18.42 0.00 41.47 1.94
3979 5287 2.104170 CGGCCTCCTCTAGAGTCTTTT 58.896 52.381 18.42 0.00 41.47 2.27
3980 5288 1.006162 ACGGCCTCCTCTAGAGTCTTT 59.994 52.381 18.42 0.00 41.47 2.52
3981 5289 0.626916 ACGGCCTCCTCTAGAGTCTT 59.373 55.000 18.42 0.00 41.47 3.01
3982 5290 0.626916 AACGGCCTCCTCTAGAGTCT 59.373 55.000 18.42 0.00 41.47 3.24
3983 5291 0.741915 CAACGGCCTCCTCTAGAGTC 59.258 60.000 18.42 4.77 41.47 3.36
3984 5292 0.039911 ACAACGGCCTCCTCTAGAGT 59.960 55.000 18.42 0.00 41.47 3.24
3985 5293 0.457851 CACAACGGCCTCCTCTAGAG 59.542 60.000 13.18 13.18 42.83 2.43
3986 5294 1.605058 GCACAACGGCCTCCTCTAGA 61.605 60.000 0.00 0.00 0.00 2.43
3987 5295 1.153549 GCACAACGGCCTCCTCTAG 60.154 63.158 0.00 0.00 0.00 2.43
3988 5296 2.978824 GCACAACGGCCTCCTCTA 59.021 61.111 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.