Multiple sequence alignment - TraesCS5B01G419300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G419300 chr5B 100.000 4033 0 0 1 4033 594926044 594922012 0.000000e+00 7448
1 TraesCS5B01G419300 chr5B 93.529 170 11 0 518 687 93472100 93472269 1.860000e-63 254
2 TraesCS5B01G419300 chr5B 90.608 181 16 1 507 686 570575728 570575548 5.210000e-59 239
3 TraesCS5B01G419300 chr5B 93.103 145 9 1 1 144 447830707 447830851 1.140000e-50 211
4 TraesCS5B01G419300 chr5A 90.756 3375 195 58 729 4033 605236023 605232696 0.000000e+00 4396
5 TraesCS5B01G419300 chr5A 91.209 182 14 2 503 683 110665234 110665414 3.110000e-61 246
6 TraesCS5B01G419300 chr5A 88.172 186 21 1 495 680 697877155 697877339 1.890000e-53 220
7 TraesCS5B01G419300 chr5D 85.752 2667 217 69 685 3295 483720486 483717927 0.000000e+00 2669
8 TraesCS5B01G419300 chr5D 86.158 773 58 24 3291 4033 483717847 483717094 0.000000e+00 789
9 TraesCS5B01G419300 chr5D 93.103 145 8 2 1 144 130661466 130661323 1.140000e-50 211
10 TraesCS5B01G419300 chr5D 93.103 145 8 2 1 144 350380436 350380293 1.140000e-50 211
11 TraesCS5B01G419300 chr7D 83.078 1176 165 25 1559 2718 215155419 215154262 0.000000e+00 1038
12 TraesCS5B01G419300 chr7D 83.673 245 32 5 3790 4033 289882463 289882226 1.460000e-54 224
13 TraesCS5B01G419300 chr7A 94.048 168 10 0 518 685 320981338 320981171 5.170000e-64 255
14 TraesCS5B01G419300 chr7A 92.090 177 12 2 512 687 431989105 431989280 8.660000e-62 248
15 TraesCS5B01G419300 chr1B 93.529 170 11 0 518 687 336774412 336774581 1.860000e-63 254
16 TraesCS5B01G419300 chr1B 93.103 145 9 1 1 144 17611329 17611185 1.140000e-50 211
17 TraesCS5B01G419300 chr1B 87.027 185 23 1 499 683 37639292 37639109 1.470000e-49 207
18 TraesCS5B01G419300 chr2D 93.064 173 11 1 518 690 516708311 516708482 6.690000e-63 252
19 TraesCS5B01G419300 chr2D 87.302 189 18 3 502 687 127500369 127500184 1.140000e-50 211
20 TraesCS5B01G419300 chr2B 92.571 175 13 0 510 684 25495977 25496151 6.690000e-63 252
21 TraesCS5B01G419300 chr2B 88.889 171 17 2 518 688 798968288 798968120 4.080000e-50 209
22 TraesCS5B01G419300 chr3B 92.090 177 13 1 508 683 54082899 54083075 8.660000e-62 248
23 TraesCS5B01G419300 chr3B 91.209 182 14 2 503 684 342882164 342882343 3.110000e-61 246
24 TraesCS5B01G419300 chr6A 89.071 183 19 1 505 686 257975752 257975934 4.060000e-55 226
25 TraesCS5B01G419300 chr6A 93.103 145 9 1 1 144 36529611 36529755 1.140000e-50 211
26 TraesCS5B01G419300 chr1A 89.444 180 16 3 504 683 560371530 560371354 1.460000e-54 224
27 TraesCS5B01G419300 chr6D 93.919 148 8 1 1 147 472381339 472381486 5.250000e-54 222
28 TraesCS5B01G419300 chr6D 94.326 141 7 1 1 140 353652563 353652703 8.780000e-52 215
29 TraesCS5B01G419300 chr4A 94.406 143 7 1 1 142 740583266 740583124 6.790000e-53 219
30 TraesCS5B01G419300 chr4D 94.326 141 7 1 1 140 3872903 3873043 8.780000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G419300 chr5B 594922012 594926044 4032 True 7448 7448 100.000 1 4033 1 chr5B.!!$R2 4032
1 TraesCS5B01G419300 chr5A 605232696 605236023 3327 True 4396 4396 90.756 729 4033 1 chr5A.!!$R1 3304
2 TraesCS5B01G419300 chr5D 483717094 483720486 3392 True 1729 2669 85.955 685 4033 2 chr5D.!!$R3 3348
3 TraesCS5B01G419300 chr7D 215154262 215155419 1157 True 1038 1038 83.078 1559 2718 1 chr7D.!!$R1 1159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.182537 CCCTCAATAACGGGCATGGA 59.817 55.0 0.0 0.0 32.83 3.41 F
1244 1263 0.176680 GCTTCCTCTGAATGCCGAGA 59.823 55.0 0.0 0.0 0.00 4.04 F
1507 1526 0.179065 TCCCTCATGCATTCGCTCAG 60.179 55.0 0.0 0.0 39.64 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 1526 0.297820 GACGCAACCGATGATCGAAC 59.702 55.000 17.52 1.54 43.74 3.95 R
2082 2131 1.466167 CCAGACCAATCAAGAGTTGCG 59.534 52.381 0.00 0.00 0.00 4.85 R
3302 3389 0.246635 GCGTAGAGGTTCAGCTGGAA 59.753 55.000 15.13 4.13 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
24 25 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
25 26 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
26 27 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
27 28 4.535294 GTCCCTAAAAAGTCCCTAGGAACT 59.465 45.833 11.48 1.00 46.37 3.01
28 29 5.723405 GTCCCTAAAAAGTCCCTAGGAACTA 59.277 44.000 11.48 0.00 41.75 2.24
29 30 6.214208 GTCCCTAAAAAGTCCCTAGGAACTAA 59.786 42.308 11.48 0.00 42.17 2.24
30 31 6.793988 TCCCTAAAAAGTCCCTAGGAACTAAA 59.206 38.462 11.48 0.00 42.17 1.85
31 32 7.463295 TCCCTAAAAAGTCCCTAGGAACTAAAT 59.537 37.037 11.48 0.00 42.17 1.40
32 33 7.556635 CCCTAAAAAGTCCCTAGGAACTAAATG 59.443 40.741 11.48 0.00 42.17 2.32
33 34 7.556635 CCTAAAAAGTCCCTAGGAACTAAATGG 59.443 40.741 11.48 1.56 42.17 3.16
34 35 6.713731 AAAAGTCCCTAGGAACTAAATGGA 57.286 37.500 11.48 0.00 42.17 3.41
35 36 6.713731 AAAGTCCCTAGGAACTAAATGGAA 57.286 37.500 11.48 0.00 42.17 3.53
36 37 5.959583 AGTCCCTAGGAACTAAATGGAAG 57.040 43.478 11.48 0.00 42.17 3.46
37 38 4.722279 AGTCCCTAGGAACTAAATGGAAGG 59.278 45.833 11.48 0.00 42.17 3.46
38 39 4.045022 TCCCTAGGAACTAAATGGAAGGG 58.955 47.826 11.48 0.00 42.17 3.95
39 40 4.045022 CCCTAGGAACTAAATGGAAGGGA 58.955 47.826 11.48 0.00 42.17 4.20
40 41 4.141459 CCCTAGGAACTAAATGGAAGGGAC 60.141 50.000 11.48 0.00 42.17 4.46
41 42 4.722279 CCTAGGAACTAAATGGAAGGGACT 59.278 45.833 1.05 0.00 42.17 3.85
43 44 5.600669 AGGAACTAAATGGAAGGGACTTT 57.399 39.130 0.00 0.00 45.99 2.66
44 45 5.965486 AGGAACTAAATGGAAGGGACTTTT 58.035 37.500 0.00 0.00 45.99 2.27
45 46 6.010850 AGGAACTAAATGGAAGGGACTTTTC 58.989 40.000 0.00 0.00 45.99 2.29
46 47 6.183361 AGGAACTAAATGGAAGGGACTTTTCT 60.183 38.462 0.00 0.00 45.99 2.52
47 48 7.018249 AGGAACTAAATGGAAGGGACTTTTCTA 59.982 37.037 0.00 0.00 45.99 2.10
55 56 3.277416 AGGGACTTTTCTACAGGGACT 57.723 47.619 0.00 0.00 31.61 3.85
56 57 4.415224 AGGGACTTTTCTACAGGGACTA 57.585 45.455 0.00 0.00 28.08 2.59
57 58 4.354662 AGGGACTTTTCTACAGGGACTAG 58.645 47.826 0.00 0.00 28.08 2.57
58 59 4.045590 AGGGACTTTTCTACAGGGACTAGA 59.954 45.833 0.00 0.00 28.08 2.43
59 60 4.776308 GGGACTTTTCTACAGGGACTAGAA 59.224 45.833 0.00 0.00 36.02 2.10
60 61 5.247792 GGGACTTTTCTACAGGGACTAGAAA 59.752 44.000 0.00 0.00 38.08 2.52
61 62 6.239800 GGGACTTTTCTACAGGGACTAGAAAA 60.240 42.308 11.13 11.13 43.31 2.29
62 63 7.222161 GGACTTTTCTACAGGGACTAGAAAAA 58.778 38.462 12.21 0.00 44.15 1.94
63 64 7.388224 GGACTTTTCTACAGGGACTAGAAAAAG 59.612 40.741 12.21 7.25 44.15 2.27
64 65 8.030913 ACTTTTCTACAGGGACTAGAAAAAGA 57.969 34.615 12.21 0.00 44.15 2.52
65 66 7.932491 ACTTTTCTACAGGGACTAGAAAAAGAC 59.068 37.037 12.21 0.00 44.15 3.01
66 67 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
67 68 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
68 69 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
69 70 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
70 71 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
71 72 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
72 73 6.209788 ACAGGGACTAGAAAAAGACTCTACTG 59.790 42.308 0.00 0.00 36.02 2.74
73 74 5.717654 AGGGACTAGAAAAAGACTCTACTGG 59.282 44.000 0.00 0.00 36.02 4.00
74 75 5.715753 GGGACTAGAAAAAGACTCTACTGGA 59.284 44.000 0.00 0.00 0.00 3.86
75 76 6.381707 GGGACTAGAAAAAGACTCTACTGGAT 59.618 42.308 0.00 0.00 0.00 3.41
76 77 7.560626 GGGACTAGAAAAAGACTCTACTGGATA 59.439 40.741 0.00 0.00 0.00 2.59
77 78 8.626526 GGACTAGAAAAAGACTCTACTGGATAG 58.373 40.741 0.00 0.00 0.00 2.08
78 79 9.181061 GACTAGAAAAAGACTCTACTGGATAGT 57.819 37.037 0.00 0.00 40.99 2.12
79 80 9.181061 ACTAGAAAAAGACTCTACTGGATAGTC 57.819 37.037 0.00 0.00 39.95 2.59
131 132 8.533569 AAAAATCCTAAGACTTCTGAACCAAA 57.466 30.769 0.00 0.00 0.00 3.28
132 133 7.511959 AAATCCTAAGACTTCTGAACCAAAC 57.488 36.000 0.00 0.00 0.00 2.93
133 134 5.623956 TCCTAAGACTTCTGAACCAAACA 57.376 39.130 0.00 0.00 0.00 2.83
134 135 5.365619 TCCTAAGACTTCTGAACCAAACAC 58.634 41.667 0.00 0.00 0.00 3.32
135 136 4.515567 CCTAAGACTTCTGAACCAAACACC 59.484 45.833 0.00 0.00 0.00 4.16
136 137 2.932261 AGACTTCTGAACCAAACACCC 58.068 47.619 0.00 0.00 0.00 4.61
137 138 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
138 139 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
139 140 0.930726 TTCTGAACCAAACACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
140 141 0.476771 TCTGAACCAAACACCCCCTC 59.523 55.000 0.00 0.00 0.00 4.30
141 142 0.184933 CTGAACCAAACACCCCCTCA 59.815 55.000 0.00 0.00 0.00 3.86
142 143 0.631753 TGAACCAAACACCCCCTCAA 59.368 50.000 0.00 0.00 0.00 3.02
143 144 1.219213 TGAACCAAACACCCCCTCAAT 59.781 47.619 0.00 0.00 0.00 2.57
144 145 2.447429 TGAACCAAACACCCCCTCAATA 59.553 45.455 0.00 0.00 0.00 1.90
145 146 3.117093 TGAACCAAACACCCCCTCAATAA 60.117 43.478 0.00 0.00 0.00 1.40
146 147 2.884320 ACCAAACACCCCCTCAATAAC 58.116 47.619 0.00 0.00 0.00 1.89
147 148 1.816224 CCAAACACCCCCTCAATAACG 59.184 52.381 0.00 0.00 0.00 3.18
148 149 1.816224 CAAACACCCCCTCAATAACGG 59.184 52.381 0.00 0.00 0.00 4.44
149 150 0.330267 AACACCCCCTCAATAACGGG 59.670 55.000 0.00 0.00 41.71 5.28
150 151 1.453197 CACCCCCTCAATAACGGGC 60.453 63.158 0.00 0.00 39.34 6.13
151 152 1.926489 ACCCCCTCAATAACGGGCA 60.926 57.895 0.00 0.00 39.34 5.36
152 153 1.286305 ACCCCCTCAATAACGGGCAT 61.286 55.000 0.00 0.00 39.34 4.40
153 154 0.823356 CCCCCTCAATAACGGGCATG 60.823 60.000 0.00 0.00 39.22 4.06
154 155 0.823356 CCCCTCAATAACGGGCATGG 60.823 60.000 0.00 0.00 39.22 3.66
155 156 0.182537 CCCTCAATAACGGGCATGGA 59.817 55.000 0.00 0.00 32.83 3.41
156 157 1.202927 CCCTCAATAACGGGCATGGAT 60.203 52.381 0.00 0.00 32.83 3.41
157 158 2.039746 CCCTCAATAACGGGCATGGATA 59.960 50.000 0.00 0.00 32.83 2.59
158 159 3.497763 CCCTCAATAACGGGCATGGATAA 60.498 47.826 0.00 0.00 32.83 1.75
159 160 4.335416 CCTCAATAACGGGCATGGATAAT 58.665 43.478 0.00 0.00 0.00 1.28
160 161 4.396166 CCTCAATAACGGGCATGGATAATC 59.604 45.833 0.00 0.00 0.00 1.75
161 162 5.241403 TCAATAACGGGCATGGATAATCT 57.759 39.130 0.00 0.00 0.00 2.40
162 163 6.367374 TCAATAACGGGCATGGATAATCTA 57.633 37.500 0.00 0.00 0.00 1.98
163 164 6.774673 TCAATAACGGGCATGGATAATCTAA 58.225 36.000 0.00 0.00 0.00 2.10
164 165 7.402054 TCAATAACGGGCATGGATAATCTAAT 58.598 34.615 0.00 0.00 0.00 1.73
165 166 7.552687 TCAATAACGGGCATGGATAATCTAATC 59.447 37.037 0.00 0.00 0.00 1.75
166 167 5.505181 AACGGGCATGGATAATCTAATCT 57.495 39.130 0.00 0.00 0.00 2.40
167 168 5.505181 ACGGGCATGGATAATCTAATCTT 57.495 39.130 0.00 0.00 0.00 2.40
168 169 5.248640 ACGGGCATGGATAATCTAATCTTG 58.751 41.667 0.00 0.00 0.00 3.02
169 170 5.013079 ACGGGCATGGATAATCTAATCTTGA 59.987 40.000 0.00 0.00 0.00 3.02
170 171 5.352569 CGGGCATGGATAATCTAATCTTGAC 59.647 44.000 0.00 0.00 0.00 3.18
171 172 5.649831 GGGCATGGATAATCTAATCTTGACC 59.350 44.000 0.00 0.00 33.20 4.02
172 173 6.240894 GGCATGGATAATCTAATCTTGACCA 58.759 40.000 0.00 0.00 0.00 4.02
173 174 6.888632 GGCATGGATAATCTAATCTTGACCAT 59.111 38.462 0.00 0.00 36.27 3.55
174 175 8.049117 GGCATGGATAATCTAATCTTGACCATA 58.951 37.037 0.00 0.00 34.49 2.74
175 176 9.453572 GCATGGATAATCTAATCTTGACCATAA 57.546 33.333 0.00 0.00 34.49 1.90
182 183 8.757982 AATCTAATCTTGACCATAAATGCACT 57.242 30.769 0.00 0.00 0.00 4.40
183 184 7.792374 TCTAATCTTGACCATAAATGCACTC 57.208 36.000 0.00 0.00 0.00 3.51
184 185 5.490139 AATCTTGACCATAAATGCACTCG 57.510 39.130 0.00 0.00 0.00 4.18
185 186 2.677836 TCTTGACCATAAATGCACTCGC 59.322 45.455 0.00 0.00 39.24 5.03
198 199 4.398549 TGCACTCGCATAAACAGTAAAC 57.601 40.909 0.00 0.00 45.36 2.01
199 200 4.062293 TGCACTCGCATAAACAGTAAACT 58.938 39.130 0.00 0.00 45.36 2.66
200 201 4.084066 TGCACTCGCATAAACAGTAAACTG 60.084 41.667 8.56 8.56 45.36 3.16
201 202 5.187252 GCACTCGCATAAACAGTAAACTGC 61.187 45.833 10.01 0.00 42.13 4.40
202 203 7.531529 GCACTCGCATAAACAGTAAACTGCA 62.532 44.000 10.01 0.00 42.13 4.41
203 204 8.896917 GCACTCGCATAAACAGTAAACTGCAA 62.897 42.308 10.01 0.00 42.13 4.08
266 267 7.713764 ACAAACAAAATTTCTAACATCCTGC 57.286 32.000 0.00 0.00 0.00 4.85
267 268 7.271511 ACAAACAAAATTTCTAACATCCTGCA 58.728 30.769 0.00 0.00 0.00 4.41
268 269 7.933033 ACAAACAAAATTTCTAACATCCTGCAT 59.067 29.630 0.00 0.00 0.00 3.96
269 270 9.421806 CAAACAAAATTTCTAACATCCTGCATA 57.578 29.630 0.00 0.00 0.00 3.14
270 271 9.995003 AAACAAAATTTCTAACATCCTGCATAA 57.005 25.926 0.00 0.00 0.00 1.90
276 277 9.807649 AATTTCTAACATCCTGCATAATTTCAC 57.192 29.630 0.00 0.00 0.00 3.18
277 278 6.942532 TCTAACATCCTGCATAATTTCACC 57.057 37.500 0.00 0.00 0.00 4.02
278 279 6.662755 TCTAACATCCTGCATAATTTCACCT 58.337 36.000 0.00 0.00 0.00 4.00
279 280 7.118723 TCTAACATCCTGCATAATTTCACCTT 58.881 34.615 0.00 0.00 0.00 3.50
280 281 5.587388 ACATCCTGCATAATTTCACCTTG 57.413 39.130 0.00 0.00 0.00 3.61
281 282 5.263599 ACATCCTGCATAATTTCACCTTGA 58.736 37.500 0.00 0.00 0.00 3.02
282 283 5.716228 ACATCCTGCATAATTTCACCTTGAA 59.284 36.000 0.00 0.00 34.03 2.69
283 284 5.902613 TCCTGCATAATTTCACCTTGAAG 57.097 39.130 0.00 0.00 37.70 3.02
284 285 5.324409 TCCTGCATAATTTCACCTTGAAGT 58.676 37.500 0.00 0.00 37.70 3.01
285 286 5.183713 TCCTGCATAATTTCACCTTGAAGTG 59.816 40.000 0.00 0.00 37.70 3.16
286 287 5.183713 CCTGCATAATTTCACCTTGAAGTGA 59.816 40.000 0.00 0.00 44.89 3.41
287 288 6.012658 TGCATAATTTCACCTTGAAGTGAC 57.987 37.500 0.00 0.00 46.18 3.67
288 289 5.534278 TGCATAATTTCACCTTGAAGTGACA 59.466 36.000 0.00 0.00 46.18 3.58
289 290 6.209192 TGCATAATTTCACCTTGAAGTGACAT 59.791 34.615 0.00 0.00 46.18 3.06
290 291 6.749118 GCATAATTTCACCTTGAAGTGACATC 59.251 38.462 0.00 0.00 46.18 3.06
291 292 5.712152 AATTTCACCTTGAAGTGACATCC 57.288 39.130 0.00 0.00 46.18 3.51
292 293 3.855255 TTCACCTTGAAGTGACATCCA 57.145 42.857 0.00 0.00 46.18 3.41
293 294 4.371624 TTCACCTTGAAGTGACATCCAT 57.628 40.909 0.00 0.00 46.18 3.41
294 295 3.678289 TCACCTTGAAGTGACATCCATG 58.322 45.455 0.00 0.00 41.78 3.66
295 296 2.751259 CACCTTGAAGTGACATCCATGG 59.249 50.000 4.97 4.97 40.34 3.66
296 297 2.644299 ACCTTGAAGTGACATCCATGGA 59.356 45.455 18.88 18.88 0.00 3.41
297 298 3.276857 CCTTGAAGTGACATCCATGGAG 58.723 50.000 21.33 14.28 0.00 3.86
298 299 3.276857 CTTGAAGTGACATCCATGGAGG 58.723 50.000 24.46 24.46 39.47 4.30
299 300 1.065199 TGAAGTGACATCCATGGAGGC 60.065 52.381 25.87 18.15 37.29 4.70
300 301 0.257039 AAGTGACATCCATGGAGGCC 59.743 55.000 25.87 16.36 37.29 5.19
301 302 0.622738 AGTGACATCCATGGAGGCCT 60.623 55.000 25.87 15.90 37.29 5.19
302 303 0.465097 GTGACATCCATGGAGGCCTG 60.465 60.000 25.87 17.93 37.29 4.85
303 304 0.915872 TGACATCCATGGAGGCCTGT 60.916 55.000 25.87 21.07 36.19 4.00
304 305 1.131638 GACATCCATGGAGGCCTGTA 58.868 55.000 25.87 0.00 34.40 2.74
305 306 0.839946 ACATCCATGGAGGCCTGTAC 59.160 55.000 25.87 0.00 37.29 2.90
306 307 0.839277 CATCCATGGAGGCCTGTACA 59.161 55.000 21.33 6.97 37.29 2.90
307 308 1.422781 CATCCATGGAGGCCTGTACAT 59.577 52.381 21.33 9.42 37.29 2.29
308 309 2.487746 TCCATGGAGGCCTGTACATA 57.512 50.000 12.00 0.00 37.29 2.29
309 310 2.770447 TCCATGGAGGCCTGTACATAA 58.230 47.619 12.00 1.02 37.29 1.90
310 311 3.119319 TCCATGGAGGCCTGTACATAAA 58.881 45.455 12.00 0.65 37.29 1.40
311 312 3.525609 TCCATGGAGGCCTGTACATAAAA 59.474 43.478 12.00 0.00 37.29 1.52
312 313 4.017958 TCCATGGAGGCCTGTACATAAAAA 60.018 41.667 12.00 0.00 37.29 1.94
334 335 8.969121 AAAAACAAAATTCAAGGCTCAAAAAG 57.031 26.923 0.00 0.00 0.00 2.27
335 336 7.920160 AAACAAAATTCAAGGCTCAAAAAGA 57.080 28.000 0.00 0.00 0.00 2.52
336 337 6.908870 ACAAAATTCAAGGCTCAAAAAGAC 57.091 33.333 0.00 0.00 0.00 3.01
337 338 6.405538 ACAAAATTCAAGGCTCAAAAAGACA 58.594 32.000 0.00 0.00 34.25 3.41
338 339 6.313658 ACAAAATTCAAGGCTCAAAAAGACAC 59.686 34.615 0.00 0.00 34.25 3.67
339 340 5.596836 AATTCAAGGCTCAAAAAGACACA 57.403 34.783 0.00 0.00 34.25 3.72
340 341 5.796424 ATTCAAGGCTCAAAAAGACACAT 57.204 34.783 0.00 0.00 34.25 3.21
341 342 5.596836 TTCAAGGCTCAAAAAGACACATT 57.403 34.783 0.00 0.00 34.25 2.71
342 343 5.596836 TCAAGGCTCAAAAAGACACATTT 57.403 34.783 0.00 0.00 34.25 2.32
343 344 5.976458 TCAAGGCTCAAAAAGACACATTTT 58.024 33.333 0.00 0.00 34.25 1.82
344 345 5.811613 TCAAGGCTCAAAAAGACACATTTTG 59.188 36.000 5.59 5.59 44.97 2.44
345 346 4.696455 AGGCTCAAAAAGACACATTTTGG 58.304 39.130 10.72 4.65 44.18 3.28
346 347 4.405358 AGGCTCAAAAAGACACATTTTGGA 59.595 37.500 10.72 0.35 44.18 3.53
347 348 4.746611 GGCTCAAAAAGACACATTTTGGAG 59.253 41.667 10.60 10.60 46.41 3.86
348 349 5.895216 CTCAAAAAGACACATTTTGGAGC 57.105 39.130 10.72 0.00 41.15 4.70
349 350 5.336150 TCAAAAAGACACATTTTGGAGCA 57.664 34.783 10.72 0.00 44.18 4.26
350 351 5.108517 TCAAAAAGACACATTTTGGAGCAC 58.891 37.500 10.72 0.00 44.18 4.40
351 352 4.734398 AAAAGACACATTTTGGAGCACA 57.266 36.364 0.00 0.00 31.30 4.57
352 353 3.715628 AAGACACATTTTGGAGCACAC 57.284 42.857 0.00 0.00 0.00 3.82
353 354 2.653726 AGACACATTTTGGAGCACACA 58.346 42.857 0.00 0.00 0.00 3.72
354 355 3.225104 AGACACATTTTGGAGCACACAT 58.775 40.909 0.00 0.00 0.00 3.21
355 356 3.638160 AGACACATTTTGGAGCACACATT 59.362 39.130 0.00 0.00 0.00 2.71
356 357 4.099881 AGACACATTTTGGAGCACACATTT 59.900 37.500 0.00 0.00 0.00 2.32
357 358 4.768583 ACACATTTTGGAGCACACATTTT 58.231 34.783 0.00 0.00 0.00 1.82
358 359 5.184711 ACACATTTTGGAGCACACATTTTT 58.815 33.333 0.00 0.00 0.00 1.94
376 377 2.605837 TTTTGACACGCACCTCTACA 57.394 45.000 0.00 0.00 0.00 2.74
377 378 2.605837 TTTGACACGCACCTCTACAA 57.394 45.000 0.00 0.00 0.00 2.41
378 379 2.605837 TTGACACGCACCTCTACAAA 57.394 45.000 0.00 0.00 0.00 2.83
379 380 2.831685 TGACACGCACCTCTACAAAT 57.168 45.000 0.00 0.00 0.00 2.32
380 381 2.412870 TGACACGCACCTCTACAAATG 58.587 47.619 0.00 0.00 0.00 2.32
381 382 2.224185 TGACACGCACCTCTACAAATGT 60.224 45.455 0.00 0.00 0.00 2.71
382 383 3.006003 TGACACGCACCTCTACAAATGTA 59.994 43.478 0.00 0.00 0.00 2.29
383 384 4.181578 GACACGCACCTCTACAAATGTAT 58.818 43.478 0.00 0.00 0.00 2.29
384 385 4.575885 ACACGCACCTCTACAAATGTATT 58.424 39.130 0.00 0.00 0.00 1.89
385 386 5.001232 ACACGCACCTCTACAAATGTATTT 58.999 37.500 0.00 0.00 0.00 1.40
386 387 5.472137 ACACGCACCTCTACAAATGTATTTT 59.528 36.000 0.00 0.00 0.00 1.82
401 402 9.881529 CAAATGTATTTTGGTGGAGAAATTTTG 57.118 29.630 0.00 0.00 40.90 2.44
402 403 9.625747 AAATGTATTTTGGTGGAGAAATTTTGT 57.374 25.926 0.00 0.00 0.00 2.83
403 404 8.831715 ATGTATTTTGGTGGAGAAATTTTGTC 57.168 30.769 0.00 0.00 0.00 3.18
404 405 6.920758 TGTATTTTGGTGGAGAAATTTTGTCG 59.079 34.615 0.00 0.00 0.00 4.35
405 406 4.993029 TTTGGTGGAGAAATTTTGTCGT 57.007 36.364 0.00 0.00 0.00 4.34
406 407 6.452494 TTTTGGTGGAGAAATTTTGTCGTA 57.548 33.333 0.00 0.00 0.00 3.43
407 408 6.642707 TTTGGTGGAGAAATTTTGTCGTAT 57.357 33.333 0.00 0.00 0.00 3.06
408 409 5.621197 TGGTGGAGAAATTTTGTCGTATG 57.379 39.130 0.00 0.00 0.00 2.39
409 410 5.067273 TGGTGGAGAAATTTTGTCGTATGT 58.933 37.500 0.00 0.00 0.00 2.29
410 411 5.533154 TGGTGGAGAAATTTTGTCGTATGTT 59.467 36.000 0.00 0.00 0.00 2.71
411 412 5.856455 GGTGGAGAAATTTTGTCGTATGTTG 59.144 40.000 0.00 0.00 0.00 3.33
412 413 5.856455 GTGGAGAAATTTTGTCGTATGTTGG 59.144 40.000 0.00 0.00 0.00 3.77
413 414 5.765677 TGGAGAAATTTTGTCGTATGTTGGA 59.234 36.000 0.00 0.00 0.00 3.53
414 415 6.263392 TGGAGAAATTTTGTCGTATGTTGGAA 59.737 34.615 0.00 0.00 0.00 3.53
415 416 7.142680 GGAGAAATTTTGTCGTATGTTGGAAA 58.857 34.615 0.00 0.00 0.00 3.13
416 417 7.650104 GGAGAAATTTTGTCGTATGTTGGAAAA 59.350 33.333 0.00 0.00 0.00 2.29
417 418 8.347729 AGAAATTTTGTCGTATGTTGGAAAAC 57.652 30.769 0.00 0.00 0.00 2.43
418 419 8.194769 AGAAATTTTGTCGTATGTTGGAAAACT 58.805 29.630 0.00 0.00 0.00 2.66
419 420 8.710835 AAATTTTGTCGTATGTTGGAAAACTT 57.289 26.923 0.00 0.00 0.00 2.66
420 421 7.692908 ATTTTGTCGTATGTTGGAAAACTTG 57.307 32.000 0.00 0.00 0.00 3.16
421 422 5.821516 TTGTCGTATGTTGGAAAACTTGT 57.178 34.783 0.00 0.00 0.00 3.16
422 423 5.821516 TGTCGTATGTTGGAAAACTTGTT 57.178 34.783 0.00 0.00 0.00 2.83
423 424 5.574082 TGTCGTATGTTGGAAAACTTGTTG 58.426 37.500 0.00 0.00 0.00 3.33
424 425 5.354513 TGTCGTATGTTGGAAAACTTGTTGA 59.645 36.000 0.00 0.00 0.00 3.18
425 426 6.038825 TGTCGTATGTTGGAAAACTTGTTGAT 59.961 34.615 0.00 0.00 0.00 2.57
426 427 6.359617 GTCGTATGTTGGAAAACTTGTTGATG 59.640 38.462 0.00 0.00 0.00 3.07
427 428 6.038825 TCGTATGTTGGAAAACTTGTTGATGT 59.961 34.615 0.00 0.00 0.00 3.06
428 429 6.695278 CGTATGTTGGAAAACTTGTTGATGTT 59.305 34.615 0.00 0.00 0.00 2.71
429 430 7.096640 CGTATGTTGGAAAACTTGTTGATGTTC 60.097 37.037 0.00 0.00 0.00 3.18
430 431 6.030548 TGTTGGAAAACTTGTTGATGTTCA 57.969 33.333 0.00 0.00 0.00 3.18
431 432 6.638610 TGTTGGAAAACTTGTTGATGTTCAT 58.361 32.000 0.00 0.00 0.00 2.57
432 433 7.102346 TGTTGGAAAACTTGTTGATGTTCATT 58.898 30.769 0.00 0.00 0.00 2.57
433 434 7.277539 TGTTGGAAAACTTGTTGATGTTCATTC 59.722 33.333 0.00 0.00 0.00 2.67
434 435 6.871844 TGGAAAACTTGTTGATGTTCATTCA 58.128 32.000 0.00 0.00 0.00 2.57
435 436 7.326454 TGGAAAACTTGTTGATGTTCATTCAA 58.674 30.769 0.00 0.00 0.00 2.69
436 437 7.821359 TGGAAAACTTGTTGATGTTCATTCAAA 59.179 29.630 0.00 0.00 35.03 2.69
437 438 8.663911 GGAAAACTTGTTGATGTTCATTCAAAA 58.336 29.630 0.00 0.00 35.03 2.44
496 497 9.511272 AATATATTTGTGCATGAGATTAGAGCA 57.489 29.630 0.00 0.00 0.00 4.26
497 498 7.812690 ATATTTGTGCATGAGATTAGAGCAA 57.187 32.000 0.00 0.00 36.91 3.91
498 499 4.952262 TTGTGCATGAGATTAGAGCAAC 57.048 40.909 0.00 0.00 36.91 4.17
499 500 3.941573 TGTGCATGAGATTAGAGCAACA 58.058 40.909 0.00 0.00 36.91 3.33
500 501 3.686241 TGTGCATGAGATTAGAGCAACAC 59.314 43.478 0.00 0.00 36.91 3.32
501 502 3.937706 GTGCATGAGATTAGAGCAACACT 59.062 43.478 0.00 0.00 36.91 3.55
502 503 4.394300 GTGCATGAGATTAGAGCAACACTT 59.606 41.667 0.00 0.00 36.91 3.16
503 504 5.005740 TGCATGAGATTAGAGCAACACTTT 58.994 37.500 0.00 0.00 31.42 2.66
504 505 5.122869 TGCATGAGATTAGAGCAACACTTTC 59.877 40.000 0.00 0.00 31.42 2.62
505 506 5.726138 GCATGAGATTAGAGCAACACTTTCG 60.726 44.000 0.00 0.00 0.00 3.46
506 507 3.679980 TGAGATTAGAGCAACACTTTCGC 59.320 43.478 0.00 0.00 0.00 4.70
507 508 3.929610 GAGATTAGAGCAACACTTTCGCT 59.070 43.478 0.00 0.00 39.12 4.93
514 515 4.147219 AGCAACACTTTCGCTCAATAAC 57.853 40.909 0.00 0.00 0.00 1.89
515 516 3.563808 AGCAACACTTTCGCTCAATAACA 59.436 39.130 0.00 0.00 0.00 2.41
516 517 3.664025 GCAACACTTTCGCTCAATAACAC 59.336 43.478 0.00 0.00 0.00 3.32
517 518 4.219033 CAACACTTTCGCTCAATAACACC 58.781 43.478 0.00 0.00 0.00 4.16
518 519 3.740115 ACACTTTCGCTCAATAACACCT 58.260 40.909 0.00 0.00 0.00 4.00
519 520 4.890088 ACACTTTCGCTCAATAACACCTA 58.110 39.130 0.00 0.00 0.00 3.08
520 521 4.689345 ACACTTTCGCTCAATAACACCTAC 59.311 41.667 0.00 0.00 0.00 3.18
521 522 4.929808 CACTTTCGCTCAATAACACCTACT 59.070 41.667 0.00 0.00 0.00 2.57
522 523 5.062308 CACTTTCGCTCAATAACACCTACTC 59.938 44.000 0.00 0.00 0.00 2.59
523 524 3.795623 TCGCTCAATAACACCTACTCC 57.204 47.619 0.00 0.00 0.00 3.85
524 525 2.429610 TCGCTCAATAACACCTACTCCC 59.570 50.000 0.00 0.00 0.00 4.30
525 526 2.431057 CGCTCAATAACACCTACTCCCT 59.569 50.000 0.00 0.00 0.00 4.20
526 527 3.491104 CGCTCAATAACACCTACTCCCTC 60.491 52.174 0.00 0.00 0.00 4.30
527 528 3.707102 GCTCAATAACACCTACTCCCTCT 59.293 47.826 0.00 0.00 0.00 3.69
528 529 4.442192 GCTCAATAACACCTACTCCCTCTG 60.442 50.000 0.00 0.00 0.00 3.35
529 530 4.684724 TCAATAACACCTACTCCCTCTGT 58.315 43.478 0.00 0.00 0.00 3.41
530 531 5.091552 TCAATAACACCTACTCCCTCTGTT 58.908 41.667 0.00 0.00 0.00 3.16
531 532 5.187186 TCAATAACACCTACTCCCTCTGTTC 59.813 44.000 0.00 0.00 0.00 3.18
532 533 1.939980 ACACCTACTCCCTCTGTTCC 58.060 55.000 0.00 0.00 0.00 3.62
533 534 1.433592 ACACCTACTCCCTCTGTTCCT 59.566 52.381 0.00 0.00 0.00 3.36
534 535 2.653366 ACACCTACTCCCTCTGTTCCTA 59.347 50.000 0.00 0.00 0.00 2.94
535 536 3.077088 ACACCTACTCCCTCTGTTCCTAA 59.923 47.826 0.00 0.00 0.00 2.69
536 537 4.094476 CACCTACTCCCTCTGTTCCTAAA 58.906 47.826 0.00 0.00 0.00 1.85
537 538 4.717280 CACCTACTCCCTCTGTTCCTAAAT 59.283 45.833 0.00 0.00 0.00 1.40
538 539 5.897824 CACCTACTCCCTCTGTTCCTAAATA 59.102 44.000 0.00 0.00 0.00 1.40
539 540 6.555360 CACCTACTCCCTCTGTTCCTAAATAT 59.445 42.308 0.00 0.00 0.00 1.28
540 541 7.071321 CACCTACTCCCTCTGTTCCTAAATATT 59.929 40.741 0.00 0.00 0.00 1.28
541 542 7.628101 ACCTACTCCCTCTGTTCCTAAATATTT 59.372 37.037 5.89 5.89 0.00 1.40
542 543 7.934120 CCTACTCCCTCTGTTCCTAAATATTTG 59.066 40.741 11.05 1.40 0.00 2.32
543 544 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
544 545 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
545 546 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
546 547 7.565680 TCCCTCTGTTCCTAAATATTTGTCTC 58.434 38.462 11.05 0.00 0.00 3.36
547 548 7.403231 TCCCTCTGTTCCTAAATATTTGTCTCT 59.597 37.037 11.05 0.00 0.00 3.10
548 549 7.713073 CCCTCTGTTCCTAAATATTTGTCTCTC 59.287 40.741 11.05 0.00 0.00 3.20
549 550 8.482128 CCTCTGTTCCTAAATATTTGTCTCTCT 58.518 37.037 11.05 0.00 0.00 3.10
567 568 7.767250 TCTCTCTAGAGATTTCAACAAGTGA 57.233 36.000 22.59 9.06 45.48 3.41
568 569 7.598278 TCTCTCTAGAGATTTCAACAAGTGAC 58.402 38.462 22.59 0.00 45.48 3.67
569 570 7.450014 TCTCTCTAGAGATTTCAACAAGTGACT 59.550 37.037 22.59 0.00 45.48 3.41
570 571 8.637196 TCTCTAGAGATTTCAACAAGTGACTA 57.363 34.615 18.76 0.00 31.58 2.59
571 572 8.516234 TCTCTAGAGATTTCAACAAGTGACTAC 58.484 37.037 18.76 0.00 31.58 2.73
572 573 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
573 574 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
575 576 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
576 577 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
577 578 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
578 579 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
579 580 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
580 581 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
581 582 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
582 583 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
583 584 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
584 585 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
585 586 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
586 587 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
587 588 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
588 589 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
589 590 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
590 591 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
591 592 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
592 593 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
593 594 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
594 595 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
595 596 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
596 597 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
597 598 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
598 599 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
599 600 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
659 660 9.784531 AGTTCATTTGAAATCTCTAGAAAGTCA 57.215 29.630 0.00 0.00 35.58 3.41
674 675 9.595823 TCTAGAAAGTCAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
675 676 9.595823 CTAGAAAGTCAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
676 677 8.494016 AGAAAGTCAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
677 678 7.553044 AGAAAGTCAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
678 679 5.681639 AGTCAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
679 680 5.427481 AGTCAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
680 681 5.758784 GTCAAATATTTAGGAACGGAGGGAG 59.241 44.000 0.00 0.00 0.00 4.30
681 682 5.427481 TCAAATATTTAGGAACGGAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
682 683 6.612456 TCAAATATTTAGGAACGGAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
683 684 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
696 697 2.227388 AGGGAGTAGTTAACACGTGACG 59.773 50.000 25.01 2.24 0.00 4.35
716 717 6.306356 GTGACGCGTTTTTACTGTTATCTCTA 59.694 38.462 15.53 0.00 0.00 2.43
717 718 6.862608 TGACGCGTTTTTACTGTTATCTCTAA 59.137 34.615 15.53 0.00 0.00 2.10
718 719 7.042320 ACGCGTTTTTACTGTTATCTCTAAC 57.958 36.000 5.58 0.00 38.17 2.34
721 722 8.166706 CGCGTTTTTACTGTTATCTCTAACAAT 58.833 33.333 0.00 0.00 44.95 2.71
799 812 1.067295 TCTTGGAGTGGGCAGAACAT 58.933 50.000 0.00 0.00 0.00 2.71
844 857 6.777580 AGTCCCAACACATCTTATTTCACTTT 59.222 34.615 0.00 0.00 0.00 2.66
862 875 2.123988 TTGAATTTGTCGCGCCGCTT 62.124 50.000 7.78 0.00 0.00 4.68
920 933 0.958822 CTTACCCAAACTGTGTGGCC 59.041 55.000 11.73 0.00 34.56 5.36
958 971 0.320771 CTACACCGGCAAAGCTGACT 60.321 55.000 0.00 0.00 37.02 3.41
962 975 1.743252 CCGGCAAAGCTGACTCTCC 60.743 63.158 0.00 0.00 37.02 3.71
978 991 3.324930 CCAGCAGGGAGGCAGACA 61.325 66.667 0.00 0.00 40.01 3.41
985 998 2.280552 GGGAGGCAGACACCGTGTA 61.281 63.158 3.58 0.00 33.69 2.90
1158 1177 1.384989 ATGTCGTCCGCCTCTTCGAT 61.385 55.000 0.00 0.00 34.93 3.59
1187 1206 2.959707 AGCTCACGGTAATAAGGGAGAG 59.040 50.000 0.00 0.00 40.17 3.20
1192 1211 2.694109 ACGGTAATAAGGGAGAGCACTC 59.306 50.000 2.05 2.05 41.94 3.51
1240 1259 1.030457 CATGGCTTCCTCTGAATGCC 58.970 55.000 0.00 0.00 41.38 4.40
1244 1263 0.176680 GCTTCCTCTGAATGCCGAGA 59.823 55.000 0.00 0.00 0.00 4.04
1247 1266 1.266178 TCCTCTGAATGCCGAGACAA 58.734 50.000 0.00 0.00 0.00 3.18
1434 1453 1.702182 TCCAATTGCTTCACTGCCAA 58.298 45.000 0.00 0.00 0.00 4.52
1507 1526 0.179065 TCCCTCATGCATTCGCTCAG 60.179 55.000 0.00 0.00 39.64 3.35
1509 1529 1.376543 CCTCATGCATTCGCTCAGTT 58.623 50.000 0.00 0.00 39.64 3.16
1510 1530 1.329906 CCTCATGCATTCGCTCAGTTC 59.670 52.381 0.00 0.00 39.64 3.01
1640 1660 2.875317 GCCCAAGTAAGCTCTATTCTGC 59.125 50.000 0.00 0.00 0.00 4.26
1786 1807 4.404098 ATCGGGCGCGGGAAAACT 62.404 61.111 23.74 0.00 0.00 2.66
1795 1816 1.579429 CGGGAAAACTGAAAGCGGG 59.421 57.895 0.00 0.00 37.60 6.13
1868 1889 1.143684 AGCCAGCTCTTCAGAAACCAA 59.856 47.619 0.00 0.00 0.00 3.67
1869 1890 2.165998 GCCAGCTCTTCAGAAACCAAT 58.834 47.619 0.00 0.00 0.00 3.16
1870 1891 2.560105 GCCAGCTCTTCAGAAACCAATT 59.440 45.455 0.00 0.00 0.00 2.32
1871 1892 3.758554 GCCAGCTCTTCAGAAACCAATTA 59.241 43.478 0.00 0.00 0.00 1.40
1878 1899 7.669722 AGCTCTTCAGAAACCAATTATTAACCA 59.330 33.333 0.00 0.00 0.00 3.67
1892 1921 9.037737 CAATTATTAACCATTTCATTCAGGCTG 57.962 33.333 8.58 8.58 0.00 4.85
1912 1945 2.186076 GCCTGACTCGTGTCTAAATCG 58.814 52.381 17.64 1.73 43.29 3.34
1917 1950 4.412207 TGACTCGTGTCTAAATCGTCATG 58.588 43.478 17.64 0.00 43.29 3.07
1980 2017 9.193806 AGCATAGTAAGTTCATCAAAATGGAAT 57.806 29.630 0.00 0.00 33.42 3.01
1986 2023 6.515272 AGTTCATCAAAATGGAATTAGCGT 57.485 33.333 0.00 0.00 33.67 5.07
1991 2028 6.806249 TCATCAAAATGGAATTAGCGTTGTTC 59.194 34.615 0.00 0.00 33.67 3.18
1993 2030 6.148948 TCAAAATGGAATTAGCGTTGTTCTG 58.851 36.000 0.00 0.00 33.67 3.02
1994 2031 5.957842 AAATGGAATTAGCGTTGTTCTGA 57.042 34.783 0.00 0.00 33.67 3.27
1995 2032 6.515272 AAATGGAATTAGCGTTGTTCTGAT 57.485 33.333 0.00 0.00 33.67 2.90
2001 2038 8.519526 TGGAATTAGCGTTGTTCTGATAAAAAT 58.480 29.630 0.00 0.00 0.00 1.82
2036 2078 7.967854 TGTAATTATTTGCTTCCATTCACTTCG 59.032 33.333 0.00 0.00 0.00 3.79
2045 2087 5.220681 GCTTCCATTCACTTCGGATACTTTC 60.221 44.000 0.00 0.00 0.00 2.62
2049 2091 5.445939 CCATTCACTTCGGATACTTTCGTTG 60.446 44.000 0.00 0.00 0.00 4.10
2052 2094 2.735134 ACTTCGGATACTTTCGTTGTGC 59.265 45.455 0.00 0.00 0.00 4.57
2055 2097 1.393539 CGGATACTTTCGTTGTGCCAG 59.606 52.381 0.00 0.00 0.00 4.85
2063 2108 4.394920 ACTTTCGTTGTGCCAGTTATATGG 59.605 41.667 0.00 0.00 43.72 2.74
2107 2156 2.507471 ACTCTTGATTGGTCTGGATCCC 59.493 50.000 9.90 0.00 0.00 3.85
2140 2189 0.250901 AATCGGCTGACAAGGTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
2224 2273 6.874134 TCAAAAGTGTAAGCAATCTCTACCTC 59.126 38.462 0.00 0.00 0.00 3.85
2234 2283 0.339859 TCTCTACCTCCTGCCACCAT 59.660 55.000 0.00 0.00 0.00 3.55
2251 2300 5.244851 GCCACCATAGATCAGATCAGTTCTA 59.755 44.000 13.14 7.99 31.77 2.10
2338 2387 4.422073 TGATGATTTGTTCCTAGGCGAT 57.578 40.909 2.96 0.00 0.00 4.58
2434 2485 2.671963 GAAACCTGTCCGTGCCCC 60.672 66.667 0.00 0.00 0.00 5.80
2472 2524 8.533569 AAAAGAGAACCCTTTTGACTGATAAA 57.466 30.769 0.00 0.00 42.72 1.40
2558 2610 2.485835 CGACTTCCCACTGGTAACCAAA 60.486 50.000 0.00 0.00 30.80 3.28
2658 2710 2.972713 CCCCTCGGAGGATCTAAATTCA 59.027 50.000 25.60 0.00 37.67 2.57
2861 2915 3.622163 CCAGCATGCTTCAAAAACAAACA 59.378 39.130 19.98 0.00 31.97 2.83
2862 2916 4.094590 CCAGCATGCTTCAAAAACAAACAA 59.905 37.500 19.98 0.00 31.97 2.83
2863 2917 5.391736 CCAGCATGCTTCAAAAACAAACAAA 60.392 36.000 19.98 0.00 31.97 2.83
2864 2918 5.508922 CAGCATGCTTCAAAAACAAACAAAC 59.491 36.000 19.98 0.00 0.00 2.93
2865 2919 5.180868 AGCATGCTTCAAAAACAAACAAACA 59.819 32.000 16.30 0.00 0.00 2.83
2866 2920 5.855395 GCATGCTTCAAAAACAAACAAACAA 59.145 32.000 11.37 0.00 0.00 2.83
2867 2921 6.361748 GCATGCTTCAAAAACAAACAAACAAA 59.638 30.769 11.37 0.00 0.00 2.83
2868 2922 7.616919 GCATGCTTCAAAAACAAACAAACAAAC 60.617 33.333 11.37 0.00 0.00 2.93
2869 2923 6.785191 TGCTTCAAAAACAAACAAACAAACA 58.215 28.000 0.00 0.00 0.00 2.83
2872 2926 8.047283 GCTTCAAAAACAAACAAACAAACAAAC 58.953 29.630 0.00 0.00 0.00 2.93
2903 2957 5.852282 ATTAGACCACAAAGCAAACAACT 57.148 34.783 0.00 0.00 0.00 3.16
2905 2959 3.088532 AGACCACAAAGCAAACAACTCA 58.911 40.909 0.00 0.00 0.00 3.41
2910 2964 4.925054 CCACAAAGCAAACAACTCATATGG 59.075 41.667 2.13 0.00 0.00 2.74
3067 3132 0.169009 GCAGAGCAACCATTTCGACC 59.831 55.000 0.00 0.00 0.00 4.79
3093 3158 0.901827 TCTATTGCGAGTTGGCTGGA 59.098 50.000 0.00 0.00 0.00 3.86
3151 3217 1.764180 TTTTTGTGCCGTCCGACGTC 61.764 55.000 19.13 5.18 40.58 4.34
3152 3218 4.986587 TTGTGCCGTCCGACGTCG 62.987 66.667 30.33 30.33 40.58 5.12
3196 3269 3.356290 CATGTCCAAGGTTTTCCCCTAG 58.644 50.000 0.00 0.00 41.86 3.02
3222 3295 7.932491 GGGATGTATGAATATGATCTCCAGATG 59.068 40.741 0.00 0.00 34.37 2.90
3310 3469 2.097036 TGATGGCATCTTTTCCAGCTG 58.903 47.619 26.49 6.78 39.36 4.24
3339 3498 3.123804 ACGCTTTCACTGTTCACTACTG 58.876 45.455 0.00 0.00 0.00 2.74
3345 3504 1.528586 CACTGTTCACTACTGCTGTGC 59.471 52.381 6.48 0.00 35.58 4.57
3395 3554 1.893808 AGCCGTGCACACAAAGGAG 60.894 57.895 18.64 0.00 0.00 3.69
3572 3739 2.280524 CGCGTTCCACTTCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
3575 3742 0.741915 GCGTTCCACTTCCACCAAAA 59.258 50.000 0.00 0.00 0.00 2.44
3620 3801 7.981102 AAATCTACTCAGGTTTCAACTAACC 57.019 36.000 0.00 0.00 46.45 2.85
3677 3865 2.285977 GTTCAAACGAGGTCACCAACT 58.714 47.619 0.00 0.00 0.00 3.16
3735 3923 2.737688 CGTACTGCTGCTGCTGCTG 61.738 63.158 27.75 27.75 41.07 4.41
3783 3971 1.975680 TCTGTTCCCACCCAAGTACTC 59.024 52.381 0.00 0.00 0.00 2.59
3784 3972 1.003233 CTGTTCCCACCCAAGTACTCC 59.997 57.143 0.00 0.00 0.00 3.85
3785 3973 1.359168 GTTCCCACCCAAGTACTCCT 58.641 55.000 0.00 0.00 0.00 3.69
3806 3994 0.912486 GGAGCAGGGGAAAGCTAGAA 59.088 55.000 0.00 0.00 42.04 2.10
3811 3999 2.237392 GCAGGGGAAAGCTAGAAGAGAA 59.763 50.000 0.00 0.00 0.00 2.87
3812 4000 3.307762 GCAGGGGAAAGCTAGAAGAGAAA 60.308 47.826 0.00 0.00 0.00 2.52
3819 4012 5.998363 GGAAAGCTAGAAGAGAAAGGAACAA 59.002 40.000 0.00 0.00 0.00 2.83
3872 4065 1.960040 ATTCCATCTGCCGTCTCGCA 61.960 55.000 0.00 0.00 37.19 5.10
3960 4153 0.591659 CCATCCATCATTCTGCAGCG 59.408 55.000 9.47 0.00 0.00 5.18
3961 4154 1.306148 CATCCATCATTCTGCAGCGT 58.694 50.000 9.47 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
2 3 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
3 4 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
4 5 4.535294 AGTTCCTAGGGACTTTTTAGGGAC 59.465 45.833 17.90 0.80 41.51 4.46
6 7 6.631763 TTAGTTCCTAGGGACTTTTTAGGG 57.368 41.667 28.19 0.00 41.75 3.53
7 8 7.556635 CCATTTAGTTCCTAGGGACTTTTTAGG 59.443 40.741 28.19 18.37 41.75 2.69
8 9 8.326529 TCCATTTAGTTCCTAGGGACTTTTTAG 58.673 37.037 28.19 14.24 41.75 1.85
9 10 8.222138 TCCATTTAGTTCCTAGGGACTTTTTA 57.778 34.615 28.19 7.21 41.75 1.52
10 11 7.098845 TCCATTTAGTTCCTAGGGACTTTTT 57.901 36.000 28.19 10.06 41.75 1.94
11 12 6.713731 TCCATTTAGTTCCTAGGGACTTTT 57.286 37.500 28.19 10.42 41.75 2.27
12 13 6.297068 CCTTCCATTTAGTTCCTAGGGACTTT 60.297 42.308 28.19 10.78 41.75 2.66
13 14 5.191921 CCTTCCATTTAGTTCCTAGGGACTT 59.808 44.000 28.19 7.61 41.75 3.01
14 15 4.722279 CCTTCCATTTAGTTCCTAGGGACT 59.278 45.833 26.36 26.36 46.37 3.85
15 16 4.141459 CCCTTCCATTTAGTTCCTAGGGAC 60.141 50.000 12.91 12.91 43.03 4.46
16 17 4.045022 CCCTTCCATTTAGTTCCTAGGGA 58.955 47.826 9.46 0.00 43.03 4.20
17 18 4.045022 TCCCTTCCATTTAGTTCCTAGGG 58.955 47.826 9.46 0.00 41.98 3.53
18 19 4.722279 AGTCCCTTCCATTTAGTTCCTAGG 59.278 45.833 0.82 0.82 0.00 3.02
19 20 5.959583 AGTCCCTTCCATTTAGTTCCTAG 57.040 43.478 0.00 0.00 0.00 3.02
20 21 6.713731 AAAGTCCCTTCCATTTAGTTCCTA 57.286 37.500 0.00 0.00 0.00 2.94
21 22 5.600669 AAAGTCCCTTCCATTTAGTTCCT 57.399 39.130 0.00 0.00 0.00 3.36
22 23 6.010850 AGAAAAGTCCCTTCCATTTAGTTCC 58.989 40.000 0.00 0.00 0.00 3.62
23 24 7.664318 TGTAGAAAAGTCCCTTCCATTTAGTTC 59.336 37.037 0.00 0.00 0.00 3.01
24 25 7.523415 TGTAGAAAAGTCCCTTCCATTTAGTT 58.477 34.615 0.00 0.00 0.00 2.24
25 26 7.086685 TGTAGAAAAGTCCCTTCCATTTAGT 57.913 36.000 0.00 0.00 0.00 2.24
26 27 6.599638 CCTGTAGAAAAGTCCCTTCCATTTAG 59.400 42.308 0.00 0.00 0.00 1.85
27 28 6.481643 CCTGTAGAAAAGTCCCTTCCATTTA 58.518 40.000 0.00 0.00 0.00 1.40
28 29 5.325239 CCTGTAGAAAAGTCCCTTCCATTT 58.675 41.667 0.00 0.00 0.00 2.32
29 30 4.263949 CCCTGTAGAAAAGTCCCTTCCATT 60.264 45.833 0.00 0.00 0.00 3.16
30 31 3.267031 CCCTGTAGAAAAGTCCCTTCCAT 59.733 47.826 0.00 0.00 0.00 3.41
31 32 2.642807 CCCTGTAGAAAAGTCCCTTCCA 59.357 50.000 0.00 0.00 0.00 3.53
32 33 2.910977 TCCCTGTAGAAAAGTCCCTTCC 59.089 50.000 0.00 0.00 0.00 3.46
33 34 3.583526 AGTCCCTGTAGAAAAGTCCCTTC 59.416 47.826 0.00 0.00 0.00 3.46
34 35 3.599348 AGTCCCTGTAGAAAAGTCCCTT 58.401 45.455 0.00 0.00 0.00 3.95
35 36 3.277416 AGTCCCTGTAGAAAAGTCCCT 57.723 47.619 0.00 0.00 0.00 4.20
36 37 4.351127 TCTAGTCCCTGTAGAAAAGTCCC 58.649 47.826 0.00 0.00 0.00 4.46
37 38 5.997384 TTCTAGTCCCTGTAGAAAAGTCC 57.003 43.478 0.00 0.00 34.30 3.85
42 43 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
43 44 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
44 45 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
45 46 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
46 47 7.393796 CAGTAGAGTCTTTTTCTAGTCCCTGTA 59.606 40.741 0.00 0.00 30.30 2.74
47 48 6.209788 CAGTAGAGTCTTTTTCTAGTCCCTGT 59.790 42.308 0.00 0.00 30.30 4.00
48 49 6.350612 CCAGTAGAGTCTTTTTCTAGTCCCTG 60.351 46.154 0.00 0.00 30.30 4.45
49 50 5.717654 CCAGTAGAGTCTTTTTCTAGTCCCT 59.282 44.000 0.00 0.00 30.30 4.20
50 51 5.715753 TCCAGTAGAGTCTTTTTCTAGTCCC 59.284 44.000 0.00 0.00 30.30 4.46
51 52 6.837471 TCCAGTAGAGTCTTTTTCTAGTCC 57.163 41.667 0.00 0.00 30.30 3.85
52 53 9.181061 ACTATCCAGTAGAGTCTTTTTCTAGTC 57.819 37.037 0.00 0.00 34.38 2.59
53 54 9.181061 GACTATCCAGTAGAGTCTTTTTCTAGT 57.819 37.037 0.00 0.00 42.17 2.57
106 107 8.414003 GTTTGGTTCAGAAGTCTTAGGATTTTT 58.586 33.333 0.00 0.00 0.00 1.94
107 108 7.559897 TGTTTGGTTCAGAAGTCTTAGGATTTT 59.440 33.333 0.00 0.00 0.00 1.82
108 109 7.013369 GTGTTTGGTTCAGAAGTCTTAGGATTT 59.987 37.037 0.00 0.00 0.00 2.17
109 110 6.486993 GTGTTTGGTTCAGAAGTCTTAGGATT 59.513 38.462 0.00 0.00 0.00 3.01
110 111 5.998363 GTGTTTGGTTCAGAAGTCTTAGGAT 59.002 40.000 0.00 0.00 0.00 3.24
111 112 5.365619 GTGTTTGGTTCAGAAGTCTTAGGA 58.634 41.667 0.00 0.00 0.00 2.94
112 113 4.515567 GGTGTTTGGTTCAGAAGTCTTAGG 59.484 45.833 0.00 0.00 0.00 2.69
113 114 4.515567 GGGTGTTTGGTTCAGAAGTCTTAG 59.484 45.833 0.00 0.00 0.00 2.18
114 115 4.457466 GGGTGTTTGGTTCAGAAGTCTTA 58.543 43.478 0.00 0.00 0.00 2.10
115 116 3.288092 GGGTGTTTGGTTCAGAAGTCTT 58.712 45.455 0.00 0.00 0.00 3.01
116 117 2.422945 GGGGTGTTTGGTTCAGAAGTCT 60.423 50.000 0.00 0.00 0.00 3.24
117 118 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
118 119 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
119 120 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
120 121 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
121 122 0.476771 GAGGGGGTGTTTGGTTCAGA 59.523 55.000 0.00 0.00 0.00 3.27
122 123 0.184933 TGAGGGGGTGTTTGGTTCAG 59.815 55.000 0.00 0.00 0.00 3.02
123 124 0.631753 TTGAGGGGGTGTTTGGTTCA 59.368 50.000 0.00 0.00 0.00 3.18
124 125 2.009681 ATTGAGGGGGTGTTTGGTTC 57.990 50.000 0.00 0.00 0.00 3.62
125 126 3.236047 GTTATTGAGGGGGTGTTTGGTT 58.764 45.455 0.00 0.00 0.00 3.67
126 127 2.816337 CGTTATTGAGGGGGTGTTTGGT 60.816 50.000 0.00 0.00 0.00 3.67
127 128 1.816224 CGTTATTGAGGGGGTGTTTGG 59.184 52.381 0.00 0.00 0.00 3.28
128 129 1.816224 CCGTTATTGAGGGGGTGTTTG 59.184 52.381 0.00 0.00 0.00 2.93
129 130 2.209690 CCGTTATTGAGGGGGTGTTT 57.790 50.000 0.00 0.00 0.00 2.83
130 131 3.970205 CCGTTATTGAGGGGGTGTT 57.030 52.632 0.00 0.00 0.00 3.32
137 138 2.276732 ATCCATGCCCGTTATTGAGG 57.723 50.000 0.00 0.00 0.00 3.86
138 139 5.248640 AGATTATCCATGCCCGTTATTGAG 58.751 41.667 0.00 0.00 0.00 3.02
139 140 5.241403 AGATTATCCATGCCCGTTATTGA 57.759 39.130 0.00 0.00 0.00 2.57
140 141 7.554118 AGATTAGATTATCCATGCCCGTTATTG 59.446 37.037 0.00 0.00 0.00 1.90
141 142 7.633789 AGATTAGATTATCCATGCCCGTTATT 58.366 34.615 0.00 0.00 0.00 1.40
142 143 7.200434 AGATTAGATTATCCATGCCCGTTAT 57.800 36.000 0.00 0.00 0.00 1.89
143 144 6.620877 AGATTAGATTATCCATGCCCGTTA 57.379 37.500 0.00 0.00 0.00 3.18
144 145 5.505181 AGATTAGATTATCCATGCCCGTT 57.495 39.130 0.00 0.00 0.00 4.44
145 146 5.013079 TCAAGATTAGATTATCCATGCCCGT 59.987 40.000 0.00 0.00 0.00 5.28
146 147 5.352569 GTCAAGATTAGATTATCCATGCCCG 59.647 44.000 0.00 0.00 0.00 6.13
147 148 5.649831 GGTCAAGATTAGATTATCCATGCCC 59.350 44.000 0.00 0.00 0.00 5.36
148 149 6.240894 TGGTCAAGATTAGATTATCCATGCC 58.759 40.000 0.00 0.00 0.00 4.40
149 150 7.934855 ATGGTCAAGATTAGATTATCCATGC 57.065 36.000 0.00 0.00 32.87 4.06
156 157 9.851686 AGTGCATTTATGGTCAAGATTAGATTA 57.148 29.630 0.00 0.00 0.00 1.75
157 158 8.757982 AGTGCATTTATGGTCAAGATTAGATT 57.242 30.769 0.00 0.00 0.00 2.40
158 159 7.172190 CGAGTGCATTTATGGTCAAGATTAGAT 59.828 37.037 0.00 0.00 0.00 1.98
159 160 6.479990 CGAGTGCATTTATGGTCAAGATTAGA 59.520 38.462 0.00 0.00 0.00 2.10
160 161 6.653183 CGAGTGCATTTATGGTCAAGATTAG 58.347 40.000 0.00 0.00 0.00 1.73
161 162 5.007626 GCGAGTGCATTTATGGTCAAGATTA 59.992 40.000 0.00 0.00 42.15 1.75
162 163 4.201950 GCGAGTGCATTTATGGTCAAGATT 60.202 41.667 0.00 0.00 42.15 2.40
163 164 3.313526 GCGAGTGCATTTATGGTCAAGAT 59.686 43.478 0.00 0.00 42.15 2.40
164 165 2.677836 GCGAGTGCATTTATGGTCAAGA 59.322 45.455 0.00 0.00 42.15 3.02
165 166 3.056952 GCGAGTGCATTTATGGTCAAG 57.943 47.619 0.00 0.00 42.15 3.02
177 178 4.084066 CAGTTTACTGTTTATGCGAGTGCA 60.084 41.667 1.69 0.00 46.36 4.57
178 179 4.394795 CAGTTTACTGTTTATGCGAGTGC 58.605 43.478 1.69 0.00 39.09 4.40
179 180 4.084066 TGCAGTTTACTGTTTATGCGAGTG 60.084 41.667 11.23 0.00 45.45 3.51
180 181 4.062293 TGCAGTTTACTGTTTATGCGAGT 58.938 39.130 11.23 0.00 45.45 4.18
181 182 4.661993 TGCAGTTTACTGTTTATGCGAG 57.338 40.909 11.23 0.00 45.45 5.03
182 183 5.425577 TTTGCAGTTTACTGTTTATGCGA 57.574 34.783 11.23 0.00 45.45 5.10
183 184 6.416455 TCTTTTTGCAGTTTACTGTTTATGCG 59.584 34.615 11.23 0.00 45.45 4.73
184 185 7.692908 TCTTTTTGCAGTTTACTGTTTATGC 57.307 32.000 11.23 0.00 45.45 3.14
186 187 9.869757 ACTTTCTTTTTGCAGTTTACTGTTTAT 57.130 25.926 11.23 0.00 45.45 1.40
188 189 9.699703 TTACTTTCTTTTTGCAGTTTACTGTTT 57.300 25.926 11.23 0.00 45.45 2.83
189 190 9.699703 TTTACTTTCTTTTTGCAGTTTACTGTT 57.300 25.926 11.23 0.00 45.45 3.16
190 191 9.699703 TTTTACTTTCTTTTTGCAGTTTACTGT 57.300 25.926 11.23 0.00 45.45 3.55
240 241 8.611757 GCAGGATGTTAGAAATTTTGTTTGTTT 58.388 29.630 0.00 0.00 39.31 2.83
241 242 7.768120 TGCAGGATGTTAGAAATTTTGTTTGTT 59.232 29.630 0.00 0.00 39.31 2.83
242 243 7.271511 TGCAGGATGTTAGAAATTTTGTTTGT 58.728 30.769 0.00 0.00 39.31 2.83
243 244 7.712264 TGCAGGATGTTAGAAATTTTGTTTG 57.288 32.000 0.00 0.00 39.31 2.93
244 245 9.995003 TTATGCAGGATGTTAGAAATTTTGTTT 57.005 25.926 0.00 0.00 39.31 2.83
250 251 9.807649 GTGAAATTATGCAGGATGTTAGAAATT 57.192 29.630 0.00 0.00 39.31 1.82
251 252 8.416329 GGTGAAATTATGCAGGATGTTAGAAAT 58.584 33.333 0.00 0.00 39.31 2.17
252 253 7.615365 AGGTGAAATTATGCAGGATGTTAGAAA 59.385 33.333 0.00 0.00 39.31 2.52
253 254 7.118723 AGGTGAAATTATGCAGGATGTTAGAA 58.881 34.615 0.00 0.00 39.31 2.10
254 255 6.662755 AGGTGAAATTATGCAGGATGTTAGA 58.337 36.000 0.00 0.00 39.31 2.10
255 256 6.949352 AGGTGAAATTATGCAGGATGTTAG 57.051 37.500 0.00 0.00 39.31 2.34
256 257 6.889177 TCAAGGTGAAATTATGCAGGATGTTA 59.111 34.615 0.00 0.00 39.31 2.41
257 258 5.716228 TCAAGGTGAAATTATGCAGGATGTT 59.284 36.000 0.00 0.00 39.31 2.71
258 259 5.263599 TCAAGGTGAAATTATGCAGGATGT 58.736 37.500 0.00 0.00 39.31 3.06
259 260 5.840243 TCAAGGTGAAATTATGCAGGATG 57.160 39.130 0.00 0.00 40.87 3.51
260 261 5.954150 ACTTCAAGGTGAAATTATGCAGGAT 59.046 36.000 0.00 0.00 35.73 3.24
261 262 5.183713 CACTTCAAGGTGAAATTATGCAGGA 59.816 40.000 0.00 0.00 35.73 3.86
262 263 5.183713 TCACTTCAAGGTGAAATTATGCAGG 59.816 40.000 0.00 0.00 42.35 4.85
263 264 6.088824 GTCACTTCAAGGTGAAATTATGCAG 58.911 40.000 0.00 0.00 46.00 4.41
264 265 5.534278 TGTCACTTCAAGGTGAAATTATGCA 59.466 36.000 0.00 0.00 46.00 3.96
265 266 6.012658 TGTCACTTCAAGGTGAAATTATGC 57.987 37.500 0.00 0.00 46.00 3.14
266 267 7.094248 TGGATGTCACTTCAAGGTGAAATTATG 60.094 37.037 0.08 0.00 46.00 1.90
267 268 6.947733 TGGATGTCACTTCAAGGTGAAATTAT 59.052 34.615 0.08 0.00 46.00 1.28
268 269 6.303054 TGGATGTCACTTCAAGGTGAAATTA 58.697 36.000 0.08 0.00 46.00 1.40
269 270 5.139727 TGGATGTCACTTCAAGGTGAAATT 58.860 37.500 0.08 0.00 46.00 1.82
270 271 4.728772 TGGATGTCACTTCAAGGTGAAAT 58.271 39.130 0.00 0.00 46.00 2.17
271 272 4.163441 TGGATGTCACTTCAAGGTGAAA 57.837 40.909 0.00 0.00 46.00 2.69
272 273 3.855255 TGGATGTCACTTCAAGGTGAA 57.145 42.857 0.00 0.00 46.00 3.18
273 274 3.559811 CCATGGATGTCACTTCAAGGTGA 60.560 47.826 5.56 0.00 42.96 4.02
274 275 2.751259 CCATGGATGTCACTTCAAGGTG 59.249 50.000 5.56 0.00 38.44 4.00
275 276 2.644299 TCCATGGATGTCACTTCAAGGT 59.356 45.455 11.44 0.00 0.00 3.50
276 277 3.276857 CTCCATGGATGTCACTTCAAGG 58.723 50.000 16.63 0.00 0.00 3.61
277 278 3.276857 CCTCCATGGATGTCACTTCAAG 58.723 50.000 16.63 0.00 38.35 3.02
278 279 2.618816 GCCTCCATGGATGTCACTTCAA 60.619 50.000 16.63 0.00 38.35 2.69
279 280 1.065199 GCCTCCATGGATGTCACTTCA 60.065 52.381 16.63 0.00 38.35 3.02
280 281 1.673168 GCCTCCATGGATGTCACTTC 58.327 55.000 16.63 0.00 38.35 3.01
281 282 0.257039 GGCCTCCATGGATGTCACTT 59.743 55.000 16.63 0.00 38.35 3.16
282 283 0.622738 AGGCCTCCATGGATGTCACT 60.623 55.000 21.75 12.95 38.35 3.41
283 284 0.465097 CAGGCCTCCATGGATGTCAC 60.465 60.000 21.75 11.17 38.35 3.67
284 285 0.915872 ACAGGCCTCCATGGATGTCA 60.916 55.000 21.75 0.00 38.35 3.58
285 286 1.131638 TACAGGCCTCCATGGATGTC 58.868 55.000 19.57 16.64 38.02 3.06
286 287 0.839946 GTACAGGCCTCCATGGATGT 59.160 55.000 16.63 18.58 39.55 3.06
287 288 0.839277 TGTACAGGCCTCCATGGATG 59.161 55.000 16.63 14.26 38.35 3.51
288 289 1.825105 ATGTACAGGCCTCCATGGAT 58.175 50.000 16.63 1.02 38.35 3.41
289 290 2.487746 TATGTACAGGCCTCCATGGA 57.512 50.000 15.27 15.27 38.35 3.41
290 291 3.576078 TTTATGTACAGGCCTCCATGG 57.424 47.619 0.00 4.97 39.35 3.66
309 310 8.791675 TCTTTTTGAGCCTTGAATTTTGTTTTT 58.208 25.926 0.00 0.00 0.00 1.94
310 311 8.236586 GTCTTTTTGAGCCTTGAATTTTGTTTT 58.763 29.630 0.00 0.00 0.00 2.43
311 312 7.390162 TGTCTTTTTGAGCCTTGAATTTTGTTT 59.610 29.630 0.00 0.00 0.00 2.83
312 313 6.878389 TGTCTTTTTGAGCCTTGAATTTTGTT 59.122 30.769 0.00 0.00 0.00 2.83
313 314 6.313658 GTGTCTTTTTGAGCCTTGAATTTTGT 59.686 34.615 0.00 0.00 0.00 2.83
314 315 6.313411 TGTGTCTTTTTGAGCCTTGAATTTTG 59.687 34.615 0.00 0.00 0.00 2.44
315 316 6.405538 TGTGTCTTTTTGAGCCTTGAATTTT 58.594 32.000 0.00 0.00 0.00 1.82
316 317 5.976458 TGTGTCTTTTTGAGCCTTGAATTT 58.024 33.333 0.00 0.00 0.00 1.82
317 318 5.596836 TGTGTCTTTTTGAGCCTTGAATT 57.403 34.783 0.00 0.00 0.00 2.17
318 319 5.796424 ATGTGTCTTTTTGAGCCTTGAAT 57.204 34.783 0.00 0.00 0.00 2.57
319 320 5.596836 AATGTGTCTTTTTGAGCCTTGAA 57.403 34.783 0.00 0.00 0.00 2.69
320 321 5.596836 AAATGTGTCTTTTTGAGCCTTGA 57.403 34.783 0.00 0.00 0.00 3.02
321 322 5.006941 CCAAAATGTGTCTTTTTGAGCCTTG 59.993 40.000 16.68 0.00 43.50 3.61
322 323 5.104982 TCCAAAATGTGTCTTTTTGAGCCTT 60.105 36.000 16.68 0.00 43.50 4.35
323 324 4.405358 TCCAAAATGTGTCTTTTTGAGCCT 59.595 37.500 16.68 0.00 43.50 4.58
324 325 4.692228 TCCAAAATGTGTCTTTTTGAGCC 58.308 39.130 16.68 0.00 43.50 4.70
325 326 4.209911 GCTCCAAAATGTGTCTTTTTGAGC 59.790 41.667 15.20 15.20 46.98 4.26
326 327 5.232838 GTGCTCCAAAATGTGTCTTTTTGAG 59.767 40.000 16.68 10.66 43.50 3.02
327 328 5.108517 GTGCTCCAAAATGTGTCTTTTTGA 58.891 37.500 16.68 2.62 43.50 2.69
328 329 4.869297 TGTGCTCCAAAATGTGTCTTTTTG 59.131 37.500 11.33 11.33 41.53 2.44
329 330 4.869861 GTGTGCTCCAAAATGTGTCTTTTT 59.130 37.500 0.00 0.00 0.00 1.94
330 331 4.081752 TGTGTGCTCCAAAATGTGTCTTTT 60.082 37.500 0.00 0.00 0.00 2.27
331 332 3.446873 TGTGTGCTCCAAAATGTGTCTTT 59.553 39.130 0.00 0.00 0.00 2.52
332 333 3.023119 TGTGTGCTCCAAAATGTGTCTT 58.977 40.909 0.00 0.00 0.00 3.01
333 334 2.653726 TGTGTGCTCCAAAATGTGTCT 58.346 42.857 0.00 0.00 0.00 3.41
334 335 3.648339 ATGTGTGCTCCAAAATGTGTC 57.352 42.857 0.00 0.00 0.00 3.67
335 336 4.405116 AAATGTGTGCTCCAAAATGTGT 57.595 36.364 0.00 0.00 0.00 3.72
336 337 5.738118 AAAAATGTGTGCTCCAAAATGTG 57.262 34.783 0.00 0.00 0.00 3.21
356 357 2.907634 TGTAGAGGTGCGTGTCAAAAA 58.092 42.857 0.00 0.00 0.00 1.94
357 358 2.605837 TGTAGAGGTGCGTGTCAAAA 57.394 45.000 0.00 0.00 0.00 2.44
358 359 2.605837 TTGTAGAGGTGCGTGTCAAA 57.394 45.000 0.00 0.00 0.00 2.69
359 360 2.605837 TTTGTAGAGGTGCGTGTCAA 57.394 45.000 0.00 0.00 0.00 3.18
360 361 2.224185 ACATTTGTAGAGGTGCGTGTCA 60.224 45.455 0.00 0.00 0.00 3.58
361 362 2.413837 ACATTTGTAGAGGTGCGTGTC 58.586 47.619 0.00 0.00 0.00 3.67
362 363 2.543777 ACATTTGTAGAGGTGCGTGT 57.456 45.000 0.00 0.00 0.00 4.49
363 364 5.545658 AAATACATTTGTAGAGGTGCGTG 57.454 39.130 0.00 0.00 33.52 5.34
364 365 5.106317 CCAAAATACATTTGTAGAGGTGCGT 60.106 40.000 0.00 0.00 45.72 5.24
365 366 5.106317 ACCAAAATACATTTGTAGAGGTGCG 60.106 40.000 0.00 0.00 45.72 5.34
366 367 6.092748 CACCAAAATACATTTGTAGAGGTGC 58.907 40.000 14.84 0.00 45.72 5.01
367 368 6.432783 TCCACCAAAATACATTTGTAGAGGTG 59.567 38.462 17.63 17.63 45.72 4.00
368 369 6.548321 TCCACCAAAATACATTTGTAGAGGT 58.452 36.000 0.00 0.00 45.72 3.85
369 370 6.884295 TCTCCACCAAAATACATTTGTAGAGG 59.116 38.462 0.00 0.00 45.72 3.69
370 371 7.921786 TCTCCACCAAAATACATTTGTAGAG 57.078 36.000 0.00 3.93 45.72 2.43
371 372 8.698973 TTTCTCCACCAAAATACATTTGTAGA 57.301 30.769 0.00 0.00 45.72 2.59
372 373 9.927668 AATTTCTCCACCAAAATACATTTGTAG 57.072 29.630 0.00 0.00 45.72 2.74
374 375 9.625747 AAAATTTCTCCACCAAAATACATTTGT 57.374 25.926 0.00 0.00 45.72 2.83
375 376 9.881529 CAAAATTTCTCCACCAAAATACATTTG 57.118 29.630 0.00 0.00 46.54 2.32
376 377 9.625747 ACAAAATTTCTCCACCAAAATACATTT 57.374 25.926 0.00 0.00 0.00 2.32
377 378 9.271828 GACAAAATTTCTCCACCAAAATACATT 57.728 29.630 0.00 0.00 0.00 2.71
378 379 7.598493 CGACAAAATTTCTCCACCAAAATACAT 59.402 33.333 0.00 0.00 0.00 2.29
379 380 6.920758 CGACAAAATTTCTCCACCAAAATACA 59.079 34.615 0.00 0.00 0.00 2.29
380 381 6.921307 ACGACAAAATTTCTCCACCAAAATAC 59.079 34.615 0.00 0.00 0.00 1.89
381 382 7.045126 ACGACAAAATTTCTCCACCAAAATA 57.955 32.000 0.00 0.00 0.00 1.40
382 383 5.912892 ACGACAAAATTTCTCCACCAAAAT 58.087 33.333 0.00 0.00 0.00 1.82
383 384 5.331876 ACGACAAAATTTCTCCACCAAAA 57.668 34.783 0.00 0.00 0.00 2.44
384 385 4.993029 ACGACAAAATTTCTCCACCAAA 57.007 36.364 0.00 0.00 0.00 3.28
385 386 5.533154 ACATACGACAAAATTTCTCCACCAA 59.467 36.000 0.00 0.00 0.00 3.67
386 387 5.067273 ACATACGACAAAATTTCTCCACCA 58.933 37.500 0.00 0.00 0.00 4.17
387 388 5.622770 ACATACGACAAAATTTCTCCACC 57.377 39.130 0.00 0.00 0.00 4.61
388 389 5.856455 CCAACATACGACAAAATTTCTCCAC 59.144 40.000 0.00 0.00 0.00 4.02
389 390 5.765677 TCCAACATACGACAAAATTTCTCCA 59.234 36.000 0.00 0.00 0.00 3.86
390 391 6.249035 TCCAACATACGACAAAATTTCTCC 57.751 37.500 0.00 0.00 0.00 3.71
391 392 8.476925 GTTTTCCAACATACGACAAAATTTCTC 58.523 33.333 0.00 0.00 32.54 2.87
392 393 8.194769 AGTTTTCCAACATACGACAAAATTTCT 58.805 29.630 0.00 0.00 35.05 2.52
393 394 8.347729 AGTTTTCCAACATACGACAAAATTTC 57.652 30.769 0.00 0.00 35.05 2.17
394 395 8.599774 CAAGTTTTCCAACATACGACAAAATTT 58.400 29.630 0.00 0.00 35.05 1.82
395 396 7.762159 ACAAGTTTTCCAACATACGACAAAATT 59.238 29.630 0.00 0.00 35.05 1.82
396 397 7.262048 ACAAGTTTTCCAACATACGACAAAAT 58.738 30.769 0.00 0.00 35.05 1.82
397 398 6.622549 ACAAGTTTTCCAACATACGACAAAA 58.377 32.000 0.00 0.00 35.05 2.44
398 399 6.197364 ACAAGTTTTCCAACATACGACAAA 57.803 33.333 0.00 0.00 35.05 2.83
399 400 5.821516 ACAAGTTTTCCAACATACGACAA 57.178 34.783 0.00 0.00 35.05 3.18
400 401 5.354513 TCAACAAGTTTTCCAACATACGACA 59.645 36.000 0.00 0.00 35.05 4.35
401 402 5.812652 TCAACAAGTTTTCCAACATACGAC 58.187 37.500 0.00 0.00 35.05 4.34
402 403 6.038825 ACATCAACAAGTTTTCCAACATACGA 59.961 34.615 0.00 0.00 35.05 3.43
403 404 6.205784 ACATCAACAAGTTTTCCAACATACG 58.794 36.000 0.00 0.00 35.05 3.06
404 405 7.704472 TGAACATCAACAAGTTTTCCAACATAC 59.296 33.333 0.00 0.00 35.05 2.39
405 406 7.776107 TGAACATCAACAAGTTTTCCAACATA 58.224 30.769 0.00 0.00 35.05 2.29
406 407 6.638610 TGAACATCAACAAGTTTTCCAACAT 58.361 32.000 0.00 0.00 35.05 2.71
407 408 6.030548 TGAACATCAACAAGTTTTCCAACA 57.969 33.333 0.00 0.00 35.05 3.33
408 409 7.277539 TGAATGAACATCAACAAGTTTTCCAAC 59.722 33.333 0.00 0.00 0.00 3.77
409 410 7.326454 TGAATGAACATCAACAAGTTTTCCAA 58.674 30.769 0.00 0.00 0.00 3.53
410 411 6.871844 TGAATGAACATCAACAAGTTTTCCA 58.128 32.000 0.00 0.00 0.00 3.53
411 412 7.769272 TTGAATGAACATCAACAAGTTTTCC 57.231 32.000 0.00 0.00 32.10 3.13
470 471 9.511272 TGCTCTAATCTCATGCACAAATATATT 57.489 29.630 0.00 0.00 0.00 1.28
471 472 9.511272 TTGCTCTAATCTCATGCACAAATATAT 57.489 29.630 0.00 0.00 33.13 0.86
472 473 8.777413 GTTGCTCTAATCTCATGCACAAATATA 58.223 33.333 0.00 0.00 33.13 0.86
473 474 7.283807 TGTTGCTCTAATCTCATGCACAAATAT 59.716 33.333 0.00 0.00 33.13 1.28
474 475 6.598850 TGTTGCTCTAATCTCATGCACAAATA 59.401 34.615 0.00 0.00 33.13 1.40
475 476 5.416639 TGTTGCTCTAATCTCATGCACAAAT 59.583 36.000 0.00 0.00 33.13 2.32
476 477 4.761227 TGTTGCTCTAATCTCATGCACAAA 59.239 37.500 0.00 0.00 33.13 2.83
477 478 4.154737 GTGTTGCTCTAATCTCATGCACAA 59.845 41.667 0.00 0.00 33.13 3.33
478 479 3.686241 GTGTTGCTCTAATCTCATGCACA 59.314 43.478 0.00 0.00 33.13 4.57
479 480 3.937706 AGTGTTGCTCTAATCTCATGCAC 59.062 43.478 0.00 0.00 33.13 4.57
480 481 4.212143 AGTGTTGCTCTAATCTCATGCA 57.788 40.909 0.00 0.00 0.00 3.96
481 482 5.557891 AAAGTGTTGCTCTAATCTCATGC 57.442 39.130 0.00 0.00 0.00 4.06
482 483 5.726138 GCGAAAGTGTTGCTCTAATCTCATG 60.726 44.000 0.00 0.00 0.00 3.07
483 484 4.331168 GCGAAAGTGTTGCTCTAATCTCAT 59.669 41.667 0.00 0.00 0.00 2.90
484 485 3.679980 GCGAAAGTGTTGCTCTAATCTCA 59.320 43.478 0.00 0.00 0.00 3.27
485 486 3.929610 AGCGAAAGTGTTGCTCTAATCTC 59.070 43.478 0.00 0.00 32.44 2.75
486 487 3.931578 AGCGAAAGTGTTGCTCTAATCT 58.068 40.909 0.00 0.00 32.44 2.40
493 494 3.563808 TGTTATTGAGCGAAAGTGTTGCT 59.436 39.130 0.00 0.00 42.73 3.91
494 495 3.664025 GTGTTATTGAGCGAAAGTGTTGC 59.336 43.478 0.00 0.00 0.00 4.17
495 496 4.024048 AGGTGTTATTGAGCGAAAGTGTTG 60.024 41.667 0.00 0.00 0.00 3.33
496 497 4.134563 AGGTGTTATTGAGCGAAAGTGTT 58.865 39.130 0.00 0.00 0.00 3.32
497 498 3.740115 AGGTGTTATTGAGCGAAAGTGT 58.260 40.909 0.00 0.00 0.00 3.55
498 499 4.929808 AGTAGGTGTTATTGAGCGAAAGTG 59.070 41.667 0.00 0.00 0.00 3.16
499 500 5.148651 AGTAGGTGTTATTGAGCGAAAGT 57.851 39.130 0.00 0.00 0.00 2.66
500 501 4.567159 GGAGTAGGTGTTATTGAGCGAAAG 59.433 45.833 0.00 0.00 0.00 2.62
501 502 4.501071 GGAGTAGGTGTTATTGAGCGAAA 58.499 43.478 0.00 0.00 0.00 3.46
502 503 3.118884 GGGAGTAGGTGTTATTGAGCGAA 60.119 47.826 0.00 0.00 0.00 4.70
503 504 2.429610 GGGAGTAGGTGTTATTGAGCGA 59.570 50.000 0.00 0.00 0.00 4.93
504 505 2.431057 AGGGAGTAGGTGTTATTGAGCG 59.569 50.000 0.00 0.00 0.00 5.03
505 506 3.707102 AGAGGGAGTAGGTGTTATTGAGC 59.293 47.826 0.00 0.00 0.00 4.26
506 507 4.712337 ACAGAGGGAGTAGGTGTTATTGAG 59.288 45.833 0.00 0.00 0.00 3.02
507 508 4.684724 ACAGAGGGAGTAGGTGTTATTGA 58.315 43.478 0.00 0.00 0.00 2.57
508 509 5.420409 GAACAGAGGGAGTAGGTGTTATTG 58.580 45.833 0.00 0.00 31.57 1.90
509 510 4.470304 GGAACAGAGGGAGTAGGTGTTATT 59.530 45.833 0.00 0.00 31.57 1.40
510 511 4.031611 GGAACAGAGGGAGTAGGTGTTAT 58.968 47.826 0.00 0.00 31.57 1.89
511 512 3.077088 AGGAACAGAGGGAGTAGGTGTTA 59.923 47.826 0.00 0.00 31.57 2.41
512 513 2.158143 AGGAACAGAGGGAGTAGGTGTT 60.158 50.000 0.00 0.00 34.08 3.32
513 514 1.433592 AGGAACAGAGGGAGTAGGTGT 59.566 52.381 0.00 0.00 0.00 4.16
514 515 2.239681 AGGAACAGAGGGAGTAGGTG 57.760 55.000 0.00 0.00 0.00 4.00
515 516 4.415224 TTTAGGAACAGAGGGAGTAGGT 57.585 45.455 0.00 0.00 0.00 3.08
516 517 7.619512 AATATTTAGGAACAGAGGGAGTAGG 57.380 40.000 0.00 0.00 0.00 3.18
517 518 8.487028 ACAAATATTTAGGAACAGAGGGAGTAG 58.513 37.037 0.00 0.00 0.00 2.57
518 519 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
519 520 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
520 521 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
521 522 7.403231 AGAGACAAATATTTAGGAACAGAGGGA 59.597 37.037 0.00 0.00 0.00 4.20
522 523 7.569240 AGAGACAAATATTTAGGAACAGAGGG 58.431 38.462 0.00 0.00 0.00 4.30
523 524 8.482128 AGAGAGACAAATATTTAGGAACAGAGG 58.518 37.037 0.00 0.00 0.00 3.69
542 543 7.540745 GTCACTTGTTGAAATCTCTAGAGAGAC 59.459 40.741 25.86 18.03 44.21 3.36
543 544 7.450014 AGTCACTTGTTGAAATCTCTAGAGAGA 59.550 37.037 25.86 11.56 44.90 3.10
544 545 7.601856 AGTCACTTGTTGAAATCTCTAGAGAG 58.398 38.462 25.86 12.38 37.08 3.20
545 546 7.531857 AGTCACTTGTTGAAATCTCTAGAGA 57.468 36.000 24.36 24.36 37.69 3.10
546 547 8.300286 TGTAGTCACTTGTTGAAATCTCTAGAG 58.700 37.037 13.98 13.98 35.39 2.43
547 548 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
548 549 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
549 550 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
550 551 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
551 552 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
552 553 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
553 554 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
554 555 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
555 556 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
556 557 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
557 558 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
558 559 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
559 560 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
560 561 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
561 562 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
562 563 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
563 564 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
564 565 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
565 566 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
566 567 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
567 568 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
568 569 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
569 570 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
570 571 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
571 572 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
572 573 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
573 574 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
574 575 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
575 576 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
576 577 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
577 578 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
578 579 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
579 580 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
633 634 9.784531 TGACTTTCTAGAGATTTCAAATGAACT 57.215 29.630 0.00 0.00 33.13 3.01
648 649 9.595823 CCGTTCCTAAATATTTGACTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
649 650 9.595823 TCCGTTCCTAAATATTTGACTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
650 651 9.595823 CTCCGTTCCTAAATATTTGACTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
651 652 7.553044 CCTCCGTTCCTAAATATTTGACTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
652 653 7.201705 CCCTCCGTTCCTAAATATTTGACTTTC 60.202 40.741 11.05 0.00 0.00 2.62
653 654 6.602009 CCCTCCGTTCCTAAATATTTGACTTT 59.398 38.462 11.05 0.00 0.00 2.66
654 655 6.069847 TCCCTCCGTTCCTAAATATTTGACTT 60.070 38.462 11.05 0.00 0.00 3.01
655 656 5.427481 TCCCTCCGTTCCTAAATATTTGACT 59.573 40.000 11.05 0.00 0.00 3.41
656 657 5.677567 TCCCTCCGTTCCTAAATATTTGAC 58.322 41.667 11.05 3.92 0.00 3.18
657 658 5.427481 ACTCCCTCCGTTCCTAAATATTTGA 59.573 40.000 11.05 0.00 0.00 2.69
658 659 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
659 660 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
660 661 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
661 662 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
662 663 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
663 664 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
664 665 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
665 666 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
666 667 4.263905 TGTTAACTACTCCCTCCGTTCCTA 60.264 45.833 7.22 0.00 0.00 2.94
667 668 3.095332 GTTAACTACTCCCTCCGTTCCT 58.905 50.000 0.00 0.00 0.00 3.36
668 669 2.827921 TGTTAACTACTCCCTCCGTTCC 59.172 50.000 7.22 0.00 0.00 3.62
669 670 3.671702 CGTGTTAACTACTCCCTCCGTTC 60.672 52.174 7.22 0.00 0.00 3.95
670 671 2.229784 CGTGTTAACTACTCCCTCCGTT 59.770 50.000 7.22 0.00 0.00 4.44
671 672 1.815003 CGTGTTAACTACTCCCTCCGT 59.185 52.381 7.22 0.00 0.00 4.69
672 673 1.815003 ACGTGTTAACTACTCCCTCCG 59.185 52.381 7.22 0.00 0.00 4.63
673 674 2.821969 TCACGTGTTAACTACTCCCTCC 59.178 50.000 16.51 0.00 0.00 4.30
674 675 3.669023 CGTCACGTGTTAACTACTCCCTC 60.669 52.174 16.51 0.00 0.00 4.30
675 676 2.227388 CGTCACGTGTTAACTACTCCCT 59.773 50.000 16.51 0.00 0.00 4.20
676 677 2.589014 CGTCACGTGTTAACTACTCCC 58.411 52.381 16.51 0.00 0.00 4.30
677 678 1.981533 GCGTCACGTGTTAACTACTCC 59.018 52.381 16.51 0.00 0.00 3.85
678 679 1.640915 CGCGTCACGTGTTAACTACTC 59.359 52.381 16.51 0.00 36.87 2.59
679 680 1.678360 CGCGTCACGTGTTAACTACT 58.322 50.000 16.51 0.00 36.87 2.57
844 857 2.612567 AAGCGGCGCGACAAATTCA 61.613 52.632 27.59 0.00 0.00 2.57
962 975 2.046507 GTGTCTGCCTCCCTGCTG 60.047 66.667 0.00 0.00 0.00 4.41
968 981 1.080025 GTACACGGTGTCTGCCTCC 60.080 63.158 18.43 0.00 0.00 4.30
976 989 4.712425 GAGCGGCGTACACGGTGT 62.712 66.667 18.89 18.89 42.62 4.16
1096 1115 4.729856 CACCGAACGTCGTCCCCC 62.730 72.222 0.00 0.00 38.40 5.40
1217 1236 2.205022 TTCAGAGGAAGCCATGTTGG 57.795 50.000 0.00 0.00 41.55 3.77
1220 1239 1.684248 GGCATTCAGAGGAAGCCATGT 60.684 52.381 0.00 0.00 42.22 3.21
1221 1240 1.030457 GGCATTCAGAGGAAGCCATG 58.970 55.000 0.00 0.00 42.22 3.66
1222 1241 0.465097 CGGCATTCAGAGGAAGCCAT 60.465 55.000 14.02 0.00 42.51 4.40
1223 1242 1.078214 CGGCATTCAGAGGAAGCCA 60.078 57.895 14.02 0.00 42.51 4.75
1244 1263 4.270084 CCGCATAACACACGAGATAATTGT 59.730 41.667 0.00 0.00 0.00 2.71
1247 1266 2.800544 GCCGCATAACACACGAGATAAT 59.199 45.455 0.00 0.00 0.00 1.28
1256 1275 2.751806 TGAATCAATGCCGCATAACACA 59.248 40.909 6.22 1.65 0.00 3.72
1257 1276 3.365832 CTGAATCAATGCCGCATAACAC 58.634 45.455 6.22 0.00 0.00 3.32
1344 1363 2.632544 CGTGCCGAGGTACTGGACA 61.633 63.158 8.63 0.00 41.55 4.02
1434 1453 0.392998 GGCACAGATGAACCACGGAT 60.393 55.000 0.00 0.00 0.00 4.18
1507 1526 0.297820 GACGCAACCGATGATCGAAC 59.702 55.000 17.52 1.54 43.74 3.95
1509 1529 1.018910 TAGACGCAACCGATGATCGA 58.981 50.000 17.52 0.00 43.74 3.59
1510 1530 1.835121 TTAGACGCAACCGATGATCG 58.165 50.000 8.05 8.05 40.07 3.69
1640 1660 5.396484 CTGCAAGATTTACAATGGTGACAG 58.604 41.667 0.00 0.00 40.11 3.51
1795 1816 4.256920 TCTCTTGTATGAAAGAAGGCTGC 58.743 43.478 0.00 0.00 35.79 5.25
1868 1889 7.212274 GCAGCCTGAATGAAATGGTTAATAAT 58.788 34.615 0.00 0.00 0.00 1.28
1869 1890 6.406849 GGCAGCCTGAATGAAATGGTTAATAA 60.407 38.462 3.29 0.00 0.00 1.40
1870 1891 5.068987 GGCAGCCTGAATGAAATGGTTAATA 59.931 40.000 3.29 0.00 0.00 0.98
1871 1892 4.141869 GGCAGCCTGAATGAAATGGTTAAT 60.142 41.667 3.29 0.00 0.00 1.40
1900 1929 3.303495 GGACACATGACGATTTAGACACG 59.697 47.826 0.00 0.00 0.00 4.49
1912 1945 4.278170 TCAGGAAACAAATGGACACATGAC 59.722 41.667 0.00 0.00 37.40 3.06
1940 1974 8.511604 ACTTACTATGCTGCATACTTTTTCAT 57.488 30.769 17.90 0.00 0.00 2.57
1941 1975 7.921786 ACTTACTATGCTGCATACTTTTTCA 57.078 32.000 17.90 0.00 0.00 2.69
1945 1979 7.770433 TGATGAACTTACTATGCTGCATACTTT 59.230 33.333 17.90 8.27 0.00 2.66
1949 1983 8.504812 TTTTGATGAACTTACTATGCTGCATA 57.495 30.769 20.25 20.25 0.00 3.14
1983 2020 9.123709 TCACATTTATTTTTATCAGAACAACGC 57.876 29.630 0.00 0.00 0.00 4.84
2006 2044 9.023967 GTGAATGGAAGCAAATAATTACATCAC 57.976 33.333 0.00 0.00 28.37 3.06
2015 2057 5.007034 TCCGAAGTGAATGGAAGCAAATAA 58.993 37.500 0.00 0.00 0.00 1.40
2025 2067 4.181578 ACGAAAGTATCCGAAGTGAATGG 58.818 43.478 0.00 0.00 46.88 3.16
2045 2087 5.758296 AGATAACCATATAACTGGCACAACG 59.242 40.000 0.00 0.00 40.15 4.10
2049 2091 7.390027 AGATGAGATAACCATATAACTGGCAC 58.610 38.462 0.00 0.00 40.15 5.01
2052 2094 8.820831 AGGAAGATGAGATAACCATATAACTGG 58.179 37.037 0.00 0.00 42.35 4.00
2063 2108 7.371936 AGTTGCGTATAGGAAGATGAGATAAC 58.628 38.462 0.00 0.00 0.00 1.89
2082 2131 1.466167 CCAGACCAATCAAGAGTTGCG 59.534 52.381 0.00 0.00 0.00 4.85
2107 2156 1.676006 GCCGATTCAACAATACCCTGG 59.324 52.381 0.00 0.00 0.00 4.45
2224 2273 2.636403 TGATCTGATCTATGGTGGCAGG 59.364 50.000 17.82 0.00 0.00 4.85
2251 2300 5.671493 CCCCTCTCTTAACGAACATTACAT 58.329 41.667 0.00 0.00 0.00 2.29
2472 2524 2.165167 CTTCAGGCAATCACACCATGT 58.835 47.619 0.00 0.00 0.00 3.21
2558 2610 2.481441 TCAAGTATGTGATGGCCCTCT 58.519 47.619 9.61 0.00 0.00 3.69
2837 2891 3.096489 TGTTTTTGAAGCATGCTGGTC 57.904 42.857 23.48 16.76 0.00 4.02
2862 2916 9.093970 GGTCTAATAGCTTTTTGTTTGTTTGTT 57.906 29.630 0.00 0.00 0.00 2.83
2863 2917 8.254508 TGGTCTAATAGCTTTTTGTTTGTTTGT 58.745 29.630 0.00 0.00 0.00 2.83
2864 2918 8.539674 GTGGTCTAATAGCTTTTTGTTTGTTTG 58.460 33.333 0.00 0.00 0.00 2.93
2865 2919 8.254508 TGTGGTCTAATAGCTTTTTGTTTGTTT 58.745 29.630 0.00 0.00 0.00 2.83
2866 2920 7.777095 TGTGGTCTAATAGCTTTTTGTTTGTT 58.223 30.769 0.00 0.00 0.00 2.83
2867 2921 7.341445 TGTGGTCTAATAGCTTTTTGTTTGT 57.659 32.000 0.00 0.00 0.00 2.83
2868 2922 8.641499 TTTGTGGTCTAATAGCTTTTTGTTTG 57.359 30.769 0.00 0.00 0.00 2.93
2869 2923 7.438160 GCTTTGTGGTCTAATAGCTTTTTGTTT 59.562 33.333 0.00 0.00 0.00 2.83
2872 2926 6.446318 TGCTTTGTGGTCTAATAGCTTTTTG 58.554 36.000 0.00 0.00 0.00 2.44
3067 3132 2.797156 CCAACTCGCAATAGATTCTCCG 59.203 50.000 0.00 0.00 0.00 4.63
3151 3217 2.478894 ACACAGAATTTTACCGACAGCG 59.521 45.455 0.00 0.00 37.24 5.18
3152 3218 3.364964 CCACACAGAATTTTACCGACAGC 60.365 47.826 0.00 0.00 0.00 4.40
3196 3269 7.429374 TCTGGAGATCATATTCATACATCCC 57.571 40.000 0.00 0.00 0.00 3.85
3222 3295 1.707632 CAGAGTCAGTAGCTGCACAC 58.292 55.000 4.12 0.00 0.00 3.82
3302 3389 0.246635 GCGTAGAGGTTCAGCTGGAA 59.753 55.000 15.13 4.13 0.00 3.53
3303 3390 0.612174 AGCGTAGAGGTTCAGCTGGA 60.612 55.000 15.13 0.46 36.73 3.86
3304 3391 0.247736 AAGCGTAGAGGTTCAGCTGG 59.752 55.000 15.13 0.00 38.28 4.85
3310 3469 3.027974 ACAGTGAAAGCGTAGAGGTTC 57.972 47.619 0.00 0.00 40.06 3.62
3339 3498 2.145905 GCAATACGCAACGCACAGC 61.146 57.895 0.00 0.00 41.79 4.40
3485 3652 2.820330 CTTAGTTAGCCTCTGAGCTGC 58.180 52.381 0.00 0.00 44.67 5.25
3735 3923 2.035576 CCGTCCAGGGTGTATTAGTAGC 59.964 54.545 0.00 0.00 35.97 3.58
3736 3924 2.035576 GCCGTCCAGGGTGTATTAGTAG 59.964 54.545 0.00 0.00 41.48 2.57
3737 3925 2.034124 GCCGTCCAGGGTGTATTAGTA 58.966 52.381 0.00 0.00 41.48 1.82
3783 3971 1.680314 GCTTTCCCCTGCTCCAAGG 60.680 63.158 0.00 0.00 37.05 3.61
3784 3972 0.620556 TAGCTTTCCCCTGCTCCAAG 59.379 55.000 0.00 0.00 40.35 3.61
3785 3973 0.620556 CTAGCTTTCCCCTGCTCCAA 59.379 55.000 0.00 0.00 40.35 3.53
3806 3994 2.165998 GCCATGCTTGTTCCTTTCTCT 58.834 47.619 0.00 0.00 0.00 3.10
3811 3999 1.577328 CGACGCCATGCTTGTTCCTT 61.577 55.000 0.00 0.00 0.00 3.36
3812 4000 2.034879 CGACGCCATGCTTGTTCCT 61.035 57.895 0.00 0.00 0.00 3.36
3819 4012 2.107750 CATCTCCGACGCCATGCT 59.892 61.111 0.00 0.00 0.00 3.79
3960 4153 4.077188 GGCTTGCTCACACGCGAC 62.077 66.667 15.93 0.00 41.77 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.