Multiple sequence alignment - TraesCS5B01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G418700 chr5B 100.000 4421 0 0 1 4421 594872416 594876836 0.000000e+00 8165
1 TraesCS5B01G418700 chr5B 92.527 455 31 3 2306 2759 38091714 38092166 0.000000e+00 649
2 TraesCS5B01G418700 chr5B 89.689 514 36 5 1785 2289 38053299 38053804 1.340000e-179 640
3 TraesCS5B01G418700 chr5B 84.352 409 60 4 4016 4421 526174112 526173705 8.910000e-107 398
4 TraesCS5B01G418700 chr5D 90.069 4038 201 74 1 4009 483696035 483699901 0.000000e+00 5051
5 TraesCS5B01G418700 chr5A 91.485 2431 132 32 1609 4013 605153679 605156060 0.000000e+00 3273
6 TraesCS5B01G418700 chr5A 88.120 1330 86 32 376 1675 605152365 605153652 0.000000e+00 1515
7 TraesCS5B01G418700 chr5A 87.901 405 31 3 4017 4420 346313473 346313086 1.120000e-125 460
8 TraesCS5B01G418700 chr5A 90.152 132 10 3 83 214 605151957 605152085 7.600000e-38 169
9 TraesCS5B01G418700 chr1B 88.924 641 69 2 2743 3382 544997393 544996754 0.000000e+00 789
10 TraesCS5B01G418700 chr1B 86.767 665 79 7 2745 3403 473824102 473824763 0.000000e+00 732
11 TraesCS5B01G418700 chr1A 88.768 641 70 2 2743 3382 500563593 500562954 0.000000e+00 784
12 TraesCS5B01G418700 chr1D 88.144 641 74 2 2743 3382 405111107 405110468 0.000000e+00 761
13 TraesCS5B01G418700 chr1D 93.827 405 25 0 4017 4421 462440418 462440014 1.050000e-170 610
14 TraesCS5B01G418700 chr1D 93.580 405 26 0 4017 4421 348020112 348020516 4.890000e-169 604
15 TraesCS5B01G418700 chr1D 91.872 406 30 3 994 1397 351245574 351245978 8.300000e-157 564
16 TraesCS5B01G418700 chr3D 87.141 661 80 3 2743 3399 438943409 438944068 0.000000e+00 745
17 TraesCS5B01G418700 chr3D 93.069 404 28 0 4018 4421 184635954 184635551 3.810000e-165 592
18 TraesCS5B01G418700 chr3D 90.843 415 38 0 4007 4421 578240987 578240573 1.390000e-154 556
19 TraesCS5B01G418700 chr3B 86.687 661 83 4 2743 3399 575257465 575258124 0.000000e+00 728
20 TraesCS5B01G418700 chr3B 91.089 404 31 1 4017 4420 681197388 681197786 3.890000e-150 542
21 TraesCS5B01G418700 chr7A 87.188 640 80 2 2743 3381 663531166 663531804 0.000000e+00 726
22 TraesCS5B01G418700 chr7A 94.207 397 23 0 1001 1397 663529035 663529431 1.360000e-169 606
23 TraesCS5B01G418700 chr7D 94.458 397 22 0 1001 1397 573692185 573692581 2.920000e-171 612
24 TraesCS5B01G418700 chrUn 92.308 403 31 0 994 1396 126673959 126674361 1.380000e-159 573
25 TraesCS5B01G418700 chr6A 92.405 395 30 0 1003 1397 115944849 115945243 8.300000e-157 564
26 TraesCS5B01G418700 chr6B 91.940 397 32 0 1001 1397 180922095 180922491 1.390000e-154 556
27 TraesCS5B01G418700 chr4B 91.940 397 32 0 1000 1396 654037733 654037337 1.390000e-154 556
28 TraesCS5B01G418700 chr4B 88.056 427 30 12 4011 4421 1176674 1176253 1.850000e-133 486
29 TraesCS5B01G418700 chr4A 87.411 421 34 6 4017 4421 692938408 692938825 2.410000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G418700 chr5B 594872416 594876836 4420 False 8165.000000 8165 100.0000 1 4421 1 chr5B.!!$F3 4420
1 TraesCS5B01G418700 chr5B 38053299 38053804 505 False 640.000000 640 89.6890 1785 2289 1 chr5B.!!$F1 504
2 TraesCS5B01G418700 chr5D 483696035 483699901 3866 False 5051.000000 5051 90.0690 1 4009 1 chr5D.!!$F1 4008
3 TraesCS5B01G418700 chr5A 605151957 605156060 4103 False 1652.333333 3273 89.9190 83 4013 3 chr5A.!!$F1 3930
4 TraesCS5B01G418700 chr1B 544996754 544997393 639 True 789.000000 789 88.9240 2743 3382 1 chr1B.!!$R1 639
5 TraesCS5B01G418700 chr1B 473824102 473824763 661 False 732.000000 732 86.7670 2745 3403 1 chr1B.!!$F1 658
6 TraesCS5B01G418700 chr1A 500562954 500563593 639 True 784.000000 784 88.7680 2743 3382 1 chr1A.!!$R1 639
7 TraesCS5B01G418700 chr1D 405110468 405111107 639 True 761.000000 761 88.1440 2743 3382 1 chr1D.!!$R1 639
8 TraesCS5B01G418700 chr3D 438943409 438944068 659 False 745.000000 745 87.1410 2743 3399 1 chr3D.!!$F1 656
9 TraesCS5B01G418700 chr3B 575257465 575258124 659 False 728.000000 728 86.6870 2743 3399 1 chr3B.!!$F1 656
10 TraesCS5B01G418700 chr7A 663529035 663531804 2769 False 666.000000 726 90.6975 1001 3381 2 chr7A.!!$F1 2380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 231 0.036010 ATCAGTTCAGGGCCTGTTCG 60.036 55.0 31.60 18.62 32.61 3.95 F
521 649 0.301687 GCGCCTATCACAATCACACG 59.698 55.0 0.00 0.00 0.00 4.49 F
526 654 0.461163 TATCACAATCACACGCCCCG 60.461 55.0 0.00 0.00 0.00 5.73 F
1567 1900 0.525761 GAGGCGCTGTTTGGCATTTA 59.474 50.0 7.64 0.00 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1779 0.178068 GGCCCAGATCTGAACGCTAA 59.822 55.0 24.62 0.0 0.0 3.09 R
1564 1897 0.464735 ATTAGCACGCCCCGCATAAA 60.465 50.0 0.00 0.0 0.0 1.40 R
1571 1904 1.102978 ATCAACAATTAGCACGCCCC 58.897 50.0 0.00 0.0 0.0 5.80 R
3557 5139 0.655733 ACAAAACGGAGCACAAGACG 59.344 50.0 0.00 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.455328 CAGACTGCAGCTGCTACAT 57.545 52.632 36.61 20.40 42.66 2.29
60 61 2.200067 CAGACTGCAGCTGCTACATAC 58.800 52.381 36.61 21.26 42.66 2.39
61 62 1.827344 AGACTGCAGCTGCTACATACA 59.173 47.619 36.61 15.90 42.66 2.29
62 63 2.159128 AGACTGCAGCTGCTACATACAG 60.159 50.000 36.61 25.74 42.66 2.74
63 64 1.552337 ACTGCAGCTGCTACATACAGT 59.448 47.619 36.61 26.38 42.66 3.55
64 65 2.200067 CTGCAGCTGCTACATACAGTC 58.800 52.381 36.61 6.43 42.66 3.51
65 66 1.134699 TGCAGCTGCTACATACAGTCC 60.135 52.381 36.61 6.22 42.66 3.85
66 67 1.845266 CAGCTGCTACATACAGTCCG 58.155 55.000 0.00 0.00 37.47 4.79
67 68 0.747255 AGCTGCTACATACAGTCCGG 59.253 55.000 0.00 0.00 37.47 5.14
68 69 0.460311 GCTGCTACATACAGTCCGGT 59.540 55.000 0.00 0.00 37.47 5.28
69 70 1.536284 GCTGCTACATACAGTCCGGTC 60.536 57.143 0.00 0.00 37.47 4.79
70 71 1.067212 CTGCTACATACAGTCCGGTCC 59.933 57.143 0.00 0.00 0.00 4.46
71 72 1.108776 GCTACATACAGTCCGGTCCA 58.891 55.000 0.00 0.00 0.00 4.02
72 73 1.067212 GCTACATACAGTCCGGTCCAG 59.933 57.143 0.00 0.00 0.00 3.86
73 74 1.067212 CTACATACAGTCCGGTCCAGC 59.933 57.143 0.00 0.00 0.00 4.85
74 75 0.902984 ACATACAGTCCGGTCCAGCA 60.903 55.000 0.00 0.00 0.00 4.41
75 76 0.460284 CATACAGTCCGGTCCAGCAC 60.460 60.000 0.00 0.00 0.00 4.40
76 77 0.902984 ATACAGTCCGGTCCAGCACA 60.903 55.000 0.00 0.00 0.00 4.57
77 78 1.812686 TACAGTCCGGTCCAGCACAC 61.813 60.000 0.00 0.00 0.00 3.82
78 79 3.626924 AGTCCGGTCCAGCACACC 61.627 66.667 0.00 0.00 0.00 4.16
79 80 3.936203 GTCCGGTCCAGCACACCA 61.936 66.667 0.00 0.00 32.89 4.17
80 81 3.936203 TCCGGTCCAGCACACCAC 61.936 66.667 0.00 0.00 32.89 4.16
122 123 0.838122 AAGCATCCCTATCCCCTCCG 60.838 60.000 0.00 0.00 0.00 4.63
162 163 4.299155 TCATTCGCCGTCTAATCATTCTC 58.701 43.478 0.00 0.00 0.00 2.87
177 178 4.335416 TCATTCTCCCTTGTTAAGCTTGG 58.665 43.478 9.86 0.32 0.00 3.61
180 181 1.541588 CTCCCTTGTTAAGCTTGGTGC 59.458 52.381 9.86 0.00 43.29 5.01
222 225 0.824759 ACTACGATCAGTTCAGGGCC 59.175 55.000 0.00 0.00 0.00 5.80
224 227 0.824109 TACGATCAGTTCAGGGCCTG 59.176 55.000 28.01 28.01 0.00 4.85
227 230 1.743996 GATCAGTTCAGGGCCTGTTC 58.256 55.000 31.60 23.80 32.61 3.18
228 231 0.036010 ATCAGTTCAGGGCCTGTTCG 60.036 55.000 31.60 18.62 32.61 3.95
229 232 1.672356 CAGTTCAGGGCCTGTTCGG 60.672 63.158 31.60 21.03 32.61 4.30
230 233 1.841556 AGTTCAGGGCCTGTTCGGA 60.842 57.895 31.60 10.77 32.61 4.55
248 371 2.113139 CACGGAGGGGCTGTGTTT 59.887 61.111 0.00 0.00 46.62 2.83
249 372 1.528309 CACGGAGGGGCTGTGTTTT 60.528 57.895 0.00 0.00 46.62 2.43
250 373 1.228154 ACGGAGGGGCTGTGTTTTC 60.228 57.895 0.00 0.00 33.94 2.29
255 378 2.035961 GGAGGGGCTGTGTTTTCTTTTC 59.964 50.000 0.00 0.00 0.00 2.29
285 408 0.690077 GGACGGTGGATAGGGAAGGT 60.690 60.000 0.00 0.00 0.00 3.50
302 425 6.272558 AGGGAAGGTATAGATGAAATGGTACC 59.727 42.308 4.43 4.43 33.47 3.34
304 427 6.935208 GGAAGGTATAGATGAAATGGTACCAC 59.065 42.308 19.09 5.26 35.25 4.16
306 429 8.792830 AAGGTATAGATGAAATGGTACCACTA 57.207 34.615 19.09 13.21 35.25 2.74
307 430 8.974292 AGGTATAGATGAAATGGTACCACTAT 57.026 34.615 19.09 19.03 35.25 2.12
312 435 6.476378 AGATGAAATGGTACCACTATATGCC 58.524 40.000 19.09 2.92 0.00 4.40
313 436 5.638530 TGAAATGGTACCACTATATGCCA 57.361 39.130 19.09 4.24 0.00 4.92
314 437 6.199557 TGAAATGGTACCACTATATGCCAT 57.800 37.500 19.09 0.00 38.24 4.40
315 438 6.237901 TGAAATGGTACCACTATATGCCATC 58.762 40.000 19.09 0.00 35.88 3.51
318 441 3.257375 TGGTACCACTATATGCCATCGTC 59.743 47.826 11.60 0.00 0.00 4.20
323 446 2.733552 CACTATATGCCATCGTCTGCAC 59.266 50.000 0.00 0.00 40.88 4.57
324 447 2.289072 ACTATATGCCATCGTCTGCACC 60.289 50.000 0.00 0.00 40.88 5.01
340 463 2.952978 TGCACCCGTTCAACTGTTTAAT 59.047 40.909 0.00 0.00 0.00 1.40
354 477 6.481954 ACTGTTTAATGATCTTCCGTGAAC 57.518 37.500 0.00 0.00 0.00 3.18
368 491 3.924073 TCCGTGAACAATTAGACATCGTG 59.076 43.478 0.00 0.00 0.00 4.35
453 579 2.835431 AGCTCTCGTCCCCATCCG 60.835 66.667 0.00 0.00 0.00 4.18
455 581 4.271816 CTCTCGTCCCCATCCGCG 62.272 72.222 0.00 0.00 0.00 6.46
463 589 4.609018 CCCATCCGCGCGAATCCT 62.609 66.667 34.63 7.60 0.00 3.24
466 592 1.592669 CATCCGCGCGAATCCTTCT 60.593 57.895 34.63 2.83 0.00 2.85
467 593 1.144057 ATCCGCGCGAATCCTTCTT 59.856 52.632 34.63 0.00 0.00 2.52
470 596 1.519455 CGCGCGAATCCTTCTTCCT 60.519 57.895 28.94 0.00 0.00 3.36
471 597 1.084370 CGCGCGAATCCTTCTTCCTT 61.084 55.000 28.94 0.00 0.00 3.36
474 600 1.669604 GCGAATCCTTCTTCCTTCCC 58.330 55.000 0.00 0.00 0.00 3.97
478 604 0.988678 ATCCTTCTTCCTTCCCCCGG 60.989 60.000 0.00 0.00 0.00 5.73
514 642 1.153369 GCTCCAGCGCCTATCACAA 60.153 57.895 2.29 0.00 0.00 3.33
515 643 0.533755 GCTCCAGCGCCTATCACAAT 60.534 55.000 2.29 0.00 0.00 2.71
516 644 1.506493 CTCCAGCGCCTATCACAATC 58.494 55.000 2.29 0.00 0.00 2.67
517 645 0.829990 TCCAGCGCCTATCACAATCA 59.170 50.000 2.29 0.00 0.00 2.57
518 646 0.940126 CCAGCGCCTATCACAATCAC 59.060 55.000 2.29 0.00 0.00 3.06
520 648 1.328680 CAGCGCCTATCACAATCACAC 59.671 52.381 2.29 0.00 0.00 3.82
521 649 0.301687 GCGCCTATCACAATCACACG 59.698 55.000 0.00 0.00 0.00 4.49
522 650 0.301687 CGCCTATCACAATCACACGC 59.698 55.000 0.00 0.00 0.00 5.34
523 651 0.657840 GCCTATCACAATCACACGCC 59.342 55.000 0.00 0.00 0.00 5.68
524 652 1.299541 CCTATCACAATCACACGCCC 58.700 55.000 0.00 0.00 0.00 6.13
525 653 1.299541 CTATCACAATCACACGCCCC 58.700 55.000 0.00 0.00 0.00 5.80
526 654 0.461163 TATCACAATCACACGCCCCG 60.461 55.000 0.00 0.00 0.00 5.73
527 655 4.101790 CACAATCACACGCCCCGC 62.102 66.667 0.00 0.00 0.00 6.13
752 888 2.742372 CTACGCCAGCACACACCC 60.742 66.667 0.00 0.00 0.00 4.61
753 889 3.529341 CTACGCCAGCACACACCCA 62.529 63.158 0.00 0.00 0.00 4.51
754 890 3.818121 TACGCCAGCACACACCCAC 62.818 63.158 0.00 0.00 0.00 4.61
756 892 3.595758 GCCAGCACACACCCACAC 61.596 66.667 0.00 0.00 0.00 3.82
761 897 3.498071 CACACACCCACACCCCCT 61.498 66.667 0.00 0.00 0.00 4.79
774 910 2.363795 CCCCTCTACCGCCACTGA 60.364 66.667 0.00 0.00 0.00 3.41
958 1117 4.885270 CCGCAACCACCACCACCA 62.885 66.667 0.00 0.00 0.00 4.17
959 1118 3.591835 CGCAACCACCACCACCAC 61.592 66.667 0.00 0.00 0.00 4.16
960 1119 3.223589 GCAACCACCACCACCACC 61.224 66.667 0.00 0.00 0.00 4.61
1311 1485 1.457455 CAACAACTGGGCCAAGGGT 60.457 57.895 13.11 6.48 0.00 4.34
1407 1581 8.232098 ACTGCCTCCAGGGTAATTAATTATAT 57.768 34.615 11.00 0.00 43.53 0.86
1446 1779 4.916041 TTTCTGTCAGGGATTGATGAGT 57.084 40.909 0.00 0.00 38.29 3.41
1454 1787 3.557595 CAGGGATTGATGAGTTAGCGTTC 59.442 47.826 0.00 0.00 0.00 3.95
1466 1799 2.016393 TAGCGTTCAGATCTGGGCCG 62.016 60.000 22.42 20.29 0.00 6.13
1493 1826 1.749033 GCCGGGGAGTTAGATCCAG 59.251 63.158 2.18 0.00 41.52 3.86
1495 1828 1.497161 CCGGGGAGTTAGATCCAGTT 58.503 55.000 0.00 0.00 41.52 3.16
1496 1829 2.674420 CCGGGGAGTTAGATCCAGTTA 58.326 52.381 0.00 0.00 41.52 2.24
1497 1830 3.240302 CCGGGGAGTTAGATCCAGTTAT 58.760 50.000 0.00 0.00 41.52 1.89
1499 1832 4.463186 CCGGGGAGTTAGATCCAGTTATAG 59.537 50.000 0.00 0.00 41.52 1.31
1500 1833 5.322754 CGGGGAGTTAGATCCAGTTATAGA 58.677 45.833 0.00 0.00 41.52 1.98
1501 1834 5.952947 CGGGGAGTTAGATCCAGTTATAGAT 59.047 44.000 0.00 0.00 41.52 1.98
1502 1835 6.127591 CGGGGAGTTAGATCCAGTTATAGATG 60.128 46.154 0.00 0.00 41.52 2.90
1503 1836 6.726764 GGGGAGTTAGATCCAGTTATAGATGT 59.273 42.308 0.00 0.00 41.52 3.06
1504 1837 7.310113 GGGGAGTTAGATCCAGTTATAGATGTG 60.310 44.444 0.00 0.00 41.52 3.21
1505 1838 7.451877 GGGAGTTAGATCCAGTTATAGATGTGA 59.548 40.741 0.00 0.00 41.52 3.58
1506 1839 9.030452 GGAGTTAGATCCAGTTATAGATGTGAT 57.970 37.037 0.00 0.00 39.34 3.06
1523 1856 4.494484 TGTGATCTCAGGTTGTCATTACG 58.506 43.478 0.00 0.00 0.00 3.18
1564 1897 3.434319 CGAGGCGCTGTTTGGCAT 61.434 61.111 7.64 0.00 0.00 4.40
1565 1898 2.964978 GAGGCGCTGTTTGGCATT 59.035 55.556 7.64 0.00 0.00 3.56
1566 1899 1.290009 GAGGCGCTGTTTGGCATTT 59.710 52.632 7.64 0.00 0.00 2.32
1567 1900 0.525761 GAGGCGCTGTTTGGCATTTA 59.474 50.000 7.64 0.00 0.00 1.40
1568 1901 1.134946 GAGGCGCTGTTTGGCATTTAT 59.865 47.619 7.64 0.00 0.00 1.40
1569 1902 1.135024 AGGCGCTGTTTGGCATTTATG 60.135 47.619 7.64 0.00 0.00 1.90
1591 1924 2.294074 GGGGCGTGCTAATTGTTGATA 58.706 47.619 0.00 0.00 0.00 2.15
1593 1926 3.304659 GGGGCGTGCTAATTGTTGATATG 60.305 47.826 0.00 0.00 0.00 1.78
1627 1960 7.099266 TCAATTCATGTCAAGTTCTGTGTTT 57.901 32.000 0.00 0.00 0.00 2.83
1727 2163 5.523552 TGTCCATTACGAAGATGCTATGTTG 59.476 40.000 0.00 0.00 0.00 3.33
1731 2167 3.895232 ACGAAGATGCTATGTTGTCCT 57.105 42.857 0.00 0.00 0.00 3.85
1768 2207 5.909760 AGAGTGGAAGCTGGTAGGATATAT 58.090 41.667 0.00 0.00 0.00 0.86
1769 2208 7.045693 AGAGTGGAAGCTGGTAGGATATATA 57.954 40.000 0.00 0.00 0.00 0.86
1802 2241 3.066291 ACTGTGTGGTCTGTTTGTGAA 57.934 42.857 0.00 0.00 0.00 3.18
1815 2254 6.000840 TCTGTTTGTGAATAGTATGTTGGCA 58.999 36.000 0.00 0.00 0.00 4.92
1826 2269 4.407365 AGTATGTTGGCACCTTAGCTTTT 58.593 39.130 0.00 0.00 34.17 2.27
1833 2276 2.952310 GGCACCTTAGCTTTTAGGGATG 59.048 50.000 12.27 5.32 35.79 3.51
1924 2369 3.627395 TTGTCGGCAGGACTGATATTT 57.373 42.857 3.00 0.00 46.24 1.40
1996 2441 4.592778 ACCTGTTAATGCCCTGTTGAAAAT 59.407 37.500 0.00 0.00 0.00 1.82
2063 2516 3.239449 ACAAAATGGAAAAGGAGTCCCC 58.761 45.455 5.25 0.00 33.89 4.81
2105 2558 4.936685 AGTCCTTAGCTCCATTCCTTTT 57.063 40.909 0.00 0.00 0.00 2.27
2106 2559 5.262455 AGTCCTTAGCTCCATTCCTTTTT 57.738 39.130 0.00 0.00 0.00 1.94
2254 2709 4.974645 AAATGTCTGTGTCCTTGGAGTA 57.025 40.909 0.00 0.00 0.00 2.59
2321 2782 0.109643 TGCTGCATCGTCATTTGCAC 60.110 50.000 0.00 0.00 43.54 4.57
2334 2795 6.072783 TCGTCATTTGCACTTGTGAATAATGA 60.073 34.615 4.79 11.55 0.00 2.57
2503 2964 1.605712 CCAAAGGTCTCAGACACCGTC 60.606 57.143 7.24 0.00 39.13 4.79
2599 3060 7.661968 ACAATGAAGCTCTATACGACATATGT 58.338 34.615 8.43 8.43 0.00 2.29
2682 4264 6.729690 TTTCTGTGACATCTCCCAAAATTT 57.270 33.333 0.00 0.00 0.00 1.82
2684 4266 6.331369 TCTGTGACATCTCCCAAAATTTTC 57.669 37.500 0.00 0.00 0.00 2.29
2685 4267 5.832595 TCTGTGACATCTCCCAAAATTTTCA 59.167 36.000 0.00 0.00 0.00 2.69
2686 4268 6.494491 TCTGTGACATCTCCCAAAATTTTCAT 59.506 34.615 0.00 0.00 0.00 2.57
2687 4269 6.457355 TGTGACATCTCCCAAAATTTTCATG 58.543 36.000 0.00 1.94 0.00 3.07
2688 4270 5.349543 GTGACATCTCCCAAAATTTTCATGC 59.650 40.000 0.00 0.00 0.00 4.06
2689 4271 5.011840 TGACATCTCCCAAAATTTTCATGCA 59.988 36.000 0.00 0.00 0.00 3.96
2690 4272 6.057321 ACATCTCCCAAAATTTTCATGCAT 57.943 33.333 0.00 0.00 0.00 3.96
2691 4273 7.093421 TGACATCTCCCAAAATTTTCATGCATA 60.093 33.333 0.00 0.00 0.00 3.14
2692 4274 7.622713 ACATCTCCCAAAATTTTCATGCATAA 58.377 30.769 0.00 0.00 0.00 1.90
2693 4275 7.767198 ACATCTCCCAAAATTTTCATGCATAAG 59.233 33.333 0.00 0.00 0.00 1.73
2694 4276 7.243604 TCTCCCAAAATTTTCATGCATAAGT 57.756 32.000 0.00 0.00 0.00 2.24
2715 4297 5.690865 AGTTTATGTTCAGTTGGAAGTGGA 58.309 37.500 0.00 0.00 35.82 4.02
3443 5025 4.864334 CCGGATGTGCCCTGCTCC 62.864 72.222 0.00 0.00 0.00 4.70
3447 5029 3.267233 ATGTGCCCTGCTCCCCAA 61.267 61.111 0.00 0.00 0.00 4.12
3529 5111 1.202770 AGGGTTTCTGTGGTTTCCTCG 60.203 52.381 0.00 0.00 0.00 4.63
3541 5123 0.534203 TTTCCTCGTGTGGCTTGGAC 60.534 55.000 0.00 0.00 0.00 4.02
3557 5139 1.796749 GACGAGTCGAGGTTGCGTC 60.797 63.158 21.50 0.00 43.37 5.19
3558 5140 2.870161 CGAGTCGAGGTTGCGTCG 60.870 66.667 6.73 5.07 42.06 5.12
3559 5141 2.254651 GAGTCGAGGTTGCGTCGT 59.745 61.111 10.29 0.00 41.54 4.34
3603 5185 0.452987 TACGGCTAGTAGTGCGTTGG 59.547 55.000 0.00 0.00 0.00 3.77
3604 5186 1.518572 CGGCTAGTAGTGCGTTGGG 60.519 63.158 0.00 0.00 0.00 4.12
3622 5204 1.009389 GGAGTCTGTCTTGTTCCGCG 61.009 60.000 0.00 0.00 0.00 6.46
3661 5243 2.279517 CGGTCCATAGCTGACGGC 60.280 66.667 0.00 0.00 42.19 5.68
3688 5270 1.333177 ACTGTCGAGTGCTCTCCTTT 58.667 50.000 10.08 0.00 37.40 3.11
3689 5271 1.689273 ACTGTCGAGTGCTCTCCTTTT 59.311 47.619 10.08 0.00 37.40 2.27
3703 5288 0.600255 CCTTTTGAGCTGGTCGTCGT 60.600 55.000 0.00 0.00 0.00 4.34
3705 5290 0.937699 TTTTGAGCTGGTCGTCGTCG 60.938 55.000 0.00 0.00 38.55 5.12
3706 5291 2.067091 TTTGAGCTGGTCGTCGTCGT 62.067 55.000 0.00 0.00 38.33 4.34
3707 5292 2.202324 GAGCTGGTCGTCGTCGTC 60.202 66.667 0.00 0.00 38.33 4.20
3708 5293 3.978867 GAGCTGGTCGTCGTCGTCG 62.979 68.421 5.50 5.50 38.33 5.12
3752 5337 7.031372 AGTATTATTGTTAGTCGTTCGCTTCA 58.969 34.615 0.00 0.00 0.00 3.02
3753 5338 6.903883 ATTATTGTTAGTCGTTCGCTTCAT 57.096 33.333 0.00 0.00 0.00 2.57
3754 5339 4.842139 ATTGTTAGTCGTTCGCTTCATC 57.158 40.909 0.00 0.00 0.00 2.92
3871 5457 1.142185 CGTATGCTCGCTCAGGTGTG 61.142 60.000 0.00 0.00 0.00 3.82
3913 5500 3.817647 AGCAGTGGTTTCTCATCTTTGTC 59.182 43.478 0.00 0.00 0.00 3.18
3914 5501 3.364366 GCAGTGGTTTCTCATCTTTGTCG 60.364 47.826 0.00 0.00 0.00 4.35
3919 5506 6.071334 AGTGGTTTCTCATCTTTGTCGATCTA 60.071 38.462 0.00 0.00 0.00 1.98
3923 5510 4.926244 TCTCATCTTTGTCGATCTAGTGC 58.074 43.478 0.00 0.00 0.00 4.40
3927 5517 1.321743 CTTTGTCGATCTAGTGCGTGC 59.678 52.381 0.00 0.00 0.00 5.34
3929 5519 0.179163 TGTCGATCTAGTGCGTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
3932 5522 0.917259 CGATCTAGTGCGTGCTGTTC 59.083 55.000 0.00 0.00 0.00 3.18
3936 5526 2.833794 TCTAGTGCGTGCTGTTCTTTT 58.166 42.857 0.00 0.00 0.00 2.27
4010 5600 1.067565 TCGCTCAGGCTACTCTTGTTG 60.068 52.381 0.00 0.00 36.09 3.33
4011 5601 1.337260 CGCTCAGGCTACTCTTGTTGT 60.337 52.381 0.00 0.00 36.09 3.32
4012 5602 2.094700 CGCTCAGGCTACTCTTGTTGTA 60.095 50.000 0.00 0.00 36.09 2.41
4013 5603 3.429547 CGCTCAGGCTACTCTTGTTGTAT 60.430 47.826 0.00 0.00 36.09 2.29
4014 5604 4.508662 GCTCAGGCTACTCTTGTTGTATT 58.491 43.478 0.00 0.00 35.22 1.89
4015 5605 4.331168 GCTCAGGCTACTCTTGTTGTATTG 59.669 45.833 0.00 0.00 35.22 1.90
4016 5606 4.832248 TCAGGCTACTCTTGTTGTATTGG 58.168 43.478 0.00 0.00 0.00 3.16
4017 5607 4.530553 TCAGGCTACTCTTGTTGTATTGGA 59.469 41.667 0.00 0.00 0.00 3.53
4018 5608 4.872691 CAGGCTACTCTTGTTGTATTGGAG 59.127 45.833 0.00 0.00 0.00 3.86
4019 5609 4.532521 AGGCTACTCTTGTTGTATTGGAGT 59.467 41.667 0.00 0.00 39.95 3.85
4020 5610 5.720041 AGGCTACTCTTGTTGTATTGGAGTA 59.280 40.000 0.00 0.00 38.13 2.59
4021 5611 6.212791 AGGCTACTCTTGTTGTATTGGAGTAA 59.787 38.462 0.00 0.00 38.49 2.24
4022 5612 6.877322 GGCTACTCTTGTTGTATTGGAGTAAA 59.123 38.462 0.00 0.00 38.49 2.01
4023 5613 7.553044 GGCTACTCTTGTTGTATTGGAGTAAAT 59.447 37.037 0.00 0.00 38.49 1.40
4024 5614 8.947115 GCTACTCTTGTTGTATTGGAGTAAATT 58.053 33.333 0.00 0.00 38.49 1.82
4026 5616 7.593825 ACTCTTGTTGTATTGGAGTAAATTGC 58.406 34.615 0.00 0.00 35.79 3.56
4027 5617 7.230510 ACTCTTGTTGTATTGGAGTAAATTGCA 59.769 33.333 0.00 0.00 35.79 4.08
4028 5618 7.367285 TCTTGTTGTATTGGAGTAAATTGCAC 58.633 34.615 0.00 0.00 0.00 4.57
4029 5619 6.641169 TGTTGTATTGGAGTAAATTGCACA 57.359 33.333 0.00 0.00 0.00 4.57
4030 5620 6.676950 TGTTGTATTGGAGTAAATTGCACAG 58.323 36.000 0.00 0.00 0.00 3.66
4031 5621 6.488344 TGTTGTATTGGAGTAAATTGCACAGA 59.512 34.615 0.00 0.00 0.00 3.41
4032 5622 7.013750 TGTTGTATTGGAGTAAATTGCACAGAA 59.986 33.333 0.00 0.00 0.00 3.02
4033 5623 7.517614 TGTATTGGAGTAAATTGCACAGAAA 57.482 32.000 0.00 0.00 0.00 2.52
4034 5624 8.121305 TGTATTGGAGTAAATTGCACAGAAAT 57.879 30.769 0.00 0.00 0.00 2.17
4035 5625 9.237187 TGTATTGGAGTAAATTGCACAGAAATA 57.763 29.630 0.00 0.00 0.00 1.40
4036 5626 9.722056 GTATTGGAGTAAATTGCACAGAAATAG 57.278 33.333 0.00 0.00 0.00 1.73
4037 5627 6.194796 TGGAGTAAATTGCACAGAAATAGC 57.805 37.500 0.00 0.00 0.00 2.97
4038 5628 5.709631 TGGAGTAAATTGCACAGAAATAGCA 59.290 36.000 0.00 0.00 36.32 3.49
4039 5629 6.030228 GGAGTAAATTGCACAGAAATAGCAC 58.970 40.000 0.00 0.00 38.11 4.40
4040 5630 6.349280 GGAGTAAATTGCACAGAAATAGCACA 60.349 38.462 0.00 0.00 38.11 4.57
4041 5631 6.980593 AGTAAATTGCACAGAAATAGCACAA 58.019 32.000 0.00 0.00 38.11 3.33
4042 5632 7.605449 AGTAAATTGCACAGAAATAGCACAAT 58.395 30.769 0.00 0.00 38.11 2.71
4043 5633 8.090214 AGTAAATTGCACAGAAATAGCACAATT 58.910 29.630 0.00 0.00 38.11 2.32
4044 5634 6.715344 AATTGCACAGAAATAGCACAATTG 57.285 33.333 3.24 3.24 38.11 2.32
4045 5635 4.177165 TGCACAGAAATAGCACAATTGG 57.823 40.909 10.83 0.00 32.55 3.16
4046 5636 3.056678 TGCACAGAAATAGCACAATTGGG 60.057 43.478 10.83 6.91 32.55 4.12
4047 5637 3.676873 GCACAGAAATAGCACAATTGGGG 60.677 47.826 10.31 2.26 0.00 4.96
4048 5638 2.497273 ACAGAAATAGCACAATTGGGGC 59.503 45.455 10.31 12.72 0.00 5.80
4049 5639 2.496871 CAGAAATAGCACAATTGGGGCA 59.503 45.455 21.54 11.15 0.00 5.36
4050 5640 3.133362 CAGAAATAGCACAATTGGGGCAT 59.867 43.478 21.54 12.50 0.00 4.40
4051 5641 3.776417 AGAAATAGCACAATTGGGGCATT 59.224 39.130 21.54 16.19 0.00 3.56
4052 5642 3.547054 AATAGCACAATTGGGGCATTG 57.453 42.857 21.54 7.04 0.00 2.82
4053 5643 1.193323 TAGCACAATTGGGGCATTGG 58.807 50.000 21.54 0.00 32.40 3.16
4054 5644 0.544833 AGCACAATTGGGGCATTGGA 60.545 50.000 21.54 0.00 32.40 3.53
4055 5645 0.324285 GCACAATTGGGGCATTGGAA 59.676 50.000 10.31 0.00 32.40 3.53
4056 5646 1.271271 GCACAATTGGGGCATTGGAAA 60.271 47.619 10.31 0.00 32.40 3.13
4057 5647 2.425539 CACAATTGGGGCATTGGAAAC 58.574 47.619 10.83 0.00 32.40 2.78
4058 5648 2.053244 ACAATTGGGGCATTGGAAACA 58.947 42.857 10.83 0.00 39.83 2.83
4059 5649 2.038820 ACAATTGGGGCATTGGAAACAG 59.961 45.455 10.83 0.00 44.54 3.16
4060 5650 2.028561 ATTGGGGCATTGGAAACAGT 57.971 45.000 0.00 0.00 44.54 3.55
4061 5651 1.799933 TTGGGGCATTGGAAACAGTT 58.200 45.000 0.00 0.00 44.54 3.16
4062 5652 1.799933 TGGGGCATTGGAAACAGTTT 58.200 45.000 0.00 0.00 44.54 2.66
4063 5653 1.415659 TGGGGCATTGGAAACAGTTTG 59.584 47.619 2.34 0.00 44.54 2.93
4064 5654 1.270785 GGGGCATTGGAAACAGTTTGG 60.271 52.381 2.34 0.00 44.54 3.28
4065 5655 1.416030 GGGCATTGGAAACAGTTTGGT 59.584 47.619 2.34 0.00 44.54 3.67
4066 5656 2.630580 GGGCATTGGAAACAGTTTGGTA 59.369 45.455 2.34 0.00 44.54 3.25
4067 5657 3.554129 GGGCATTGGAAACAGTTTGGTAC 60.554 47.826 2.34 0.00 44.54 3.34
4068 5658 3.554129 GGCATTGGAAACAGTTTGGTACC 60.554 47.826 4.43 4.43 44.54 3.34
4069 5659 3.068873 GCATTGGAAACAGTTTGGTACCA 59.931 43.478 11.60 11.60 44.54 3.25
4070 5660 4.442192 GCATTGGAAACAGTTTGGTACCAA 60.442 41.667 23.69 23.69 44.54 3.67
4071 5661 4.993029 TTGGAAACAGTTTGGTACCAAG 57.007 40.909 25.74 17.51 44.54 3.61
4072 5662 4.237976 TGGAAACAGTTTGGTACCAAGA 57.762 40.909 25.74 14.91 34.78 3.02
4073 5663 4.798882 TGGAAACAGTTTGGTACCAAGAT 58.201 39.130 25.74 16.25 34.78 2.40
4074 5664 5.205056 TGGAAACAGTTTGGTACCAAGATT 58.795 37.500 25.74 15.78 34.78 2.40
4075 5665 5.068460 TGGAAACAGTTTGGTACCAAGATTG 59.932 40.000 25.74 24.08 34.78 2.67
4076 5666 5.300792 GGAAACAGTTTGGTACCAAGATTGA 59.699 40.000 27.76 14.50 37.24 2.57
4077 5667 6.015434 GGAAACAGTTTGGTACCAAGATTGAT 60.015 38.462 27.76 19.43 37.24 2.57
4078 5668 7.175990 GGAAACAGTTTGGTACCAAGATTGATA 59.824 37.037 27.76 13.32 37.24 2.15
4079 5669 8.472007 AAACAGTTTGGTACCAAGATTGATAA 57.528 30.769 27.76 12.72 37.24 1.75
4080 5670 8.650143 AACAGTTTGGTACCAAGATTGATAAT 57.350 30.769 27.76 12.66 37.24 1.28
4081 5671 8.650143 ACAGTTTGGTACCAAGATTGATAATT 57.350 30.769 27.76 10.21 37.24 1.40
4082 5672 9.088987 ACAGTTTGGTACCAAGATTGATAATTT 57.911 29.630 27.76 7.51 37.24 1.82
4083 5673 9.927668 CAGTTTGGTACCAAGATTGATAATTTT 57.072 29.630 25.74 0.00 37.24 1.82
4088 5678 9.233649 TGGTACCAAGATTGATAATTTTTACGT 57.766 29.630 13.60 0.00 0.00 3.57
4089 5679 9.498307 GGTACCAAGATTGATAATTTTTACGTG 57.502 33.333 7.15 0.00 0.00 4.49
4092 5682 8.788806 ACCAAGATTGATAATTTTTACGTGTCA 58.211 29.630 0.00 0.00 0.00 3.58
4093 5683 9.277565 CCAAGATTGATAATTTTTACGTGTCAG 57.722 33.333 0.00 0.00 0.00 3.51
4094 5684 9.825972 CAAGATTGATAATTTTTACGTGTCAGT 57.174 29.630 0.00 0.00 0.00 3.41
4104 5694 9.825972 AATTTTTACGTGTCAGTATCAAGATTG 57.174 29.630 0.00 0.00 0.00 2.67
4105 5695 6.961359 TTTACGTGTCAGTATCAAGATTGG 57.039 37.500 0.00 0.00 0.00 3.16
4106 5696 3.861840 ACGTGTCAGTATCAAGATTGGG 58.138 45.455 0.00 0.00 0.00 4.12
4107 5697 3.198068 CGTGTCAGTATCAAGATTGGGG 58.802 50.000 0.00 0.00 0.00 4.96
4108 5698 2.945668 GTGTCAGTATCAAGATTGGGGC 59.054 50.000 0.00 0.00 0.00 5.80
4109 5699 2.213499 GTCAGTATCAAGATTGGGGCG 58.787 52.381 0.00 0.00 0.00 6.13
4110 5700 2.115427 TCAGTATCAAGATTGGGGCGA 58.885 47.619 0.00 0.00 0.00 5.54
4111 5701 2.103094 TCAGTATCAAGATTGGGGCGAG 59.897 50.000 0.00 0.00 0.00 5.03
4112 5702 1.202698 AGTATCAAGATTGGGGCGAGC 60.203 52.381 0.00 0.00 0.00 5.03
4113 5703 0.108585 TATCAAGATTGGGGCGAGCC 59.891 55.000 5.37 5.37 0.00 4.70
4114 5704 2.947938 ATCAAGATTGGGGCGAGCCG 62.948 60.000 8.14 0.00 36.85 5.52
4115 5705 3.717294 AAGATTGGGGCGAGCCGT 61.717 61.111 8.14 0.00 36.85 5.68
4116 5706 3.268103 AAGATTGGGGCGAGCCGTT 62.268 57.895 8.14 0.00 36.85 4.44
4117 5707 3.508840 GATTGGGGCGAGCCGTTG 61.509 66.667 8.14 0.00 36.85 4.10
4122 5712 3.972276 GGGCGAGCCGTTGCAAAA 61.972 61.111 0.00 0.00 41.13 2.44
4123 5713 2.026879 GGCGAGCCGTTGCAAAAA 59.973 55.556 0.00 0.00 41.13 1.94
4161 5751 8.037058 CGTTCTATACGTATTGACAGAGAAAC 57.963 38.462 17.50 11.02 45.14 2.78
4162 5752 7.909121 CGTTCTATACGTATTGACAGAGAAACT 59.091 37.037 17.50 0.00 45.14 2.66
4173 5763 0.396811 AGAGAAACTGACCGGTTGGG 59.603 55.000 9.42 4.56 40.75 4.12
4175 5765 2.203437 AAACTGACCGGTTGGGCC 60.203 61.111 9.42 0.00 46.01 5.80
4176 5766 3.802852 AAACTGACCGGTTGGGCCC 62.803 63.158 17.59 17.59 46.01 5.80
4184 5774 4.966787 GGTTGGGCCCGCTTGTCA 62.967 66.667 19.37 0.00 0.00 3.58
4185 5775 3.365265 GTTGGGCCCGCTTGTCAG 61.365 66.667 19.37 0.00 0.00 3.51
4186 5776 3.565214 TTGGGCCCGCTTGTCAGA 61.565 61.111 19.37 0.00 0.00 3.27
4187 5777 3.842925 TTGGGCCCGCTTGTCAGAC 62.843 63.158 19.37 0.00 0.00 3.51
4191 5781 4.680237 CCCGCTTGTCAGACGCCA 62.680 66.667 0.00 0.00 0.00 5.69
4192 5782 3.414700 CCGCTTGTCAGACGCCAC 61.415 66.667 0.00 0.00 0.00 5.01
4193 5783 2.661537 CGCTTGTCAGACGCCACA 60.662 61.111 0.00 0.00 0.00 4.17
4194 5784 2.939022 GCTTGTCAGACGCCACAC 59.061 61.111 0.00 0.00 0.00 3.82
4195 5785 1.595382 GCTTGTCAGACGCCACACT 60.595 57.895 0.00 0.00 0.00 3.55
4196 5786 1.835483 GCTTGTCAGACGCCACACTG 61.835 60.000 0.00 0.00 35.72 3.66
4197 5787 1.224069 CTTGTCAGACGCCACACTGG 61.224 60.000 0.00 0.00 41.55 4.00
4233 5823 4.373116 GGCGCTGACTGGGACGAA 62.373 66.667 7.64 0.00 0.00 3.85
4234 5824 2.811317 GCGCTGACTGGGACGAAG 60.811 66.667 0.00 0.00 0.00 3.79
4235 5825 2.811317 CGCTGACTGGGACGAAGC 60.811 66.667 0.00 0.00 0.00 3.86
4236 5826 2.435059 GCTGACTGGGACGAAGCC 60.435 66.667 0.00 0.00 0.00 4.35
4237 5827 2.125912 CTGACTGGGACGAAGCCG 60.126 66.667 0.00 0.00 42.50 5.52
4238 5828 3.649277 CTGACTGGGACGAAGCCGG 62.649 68.421 0.00 0.00 40.78 6.13
4241 5831 4.821589 CTGGGACGAAGCCGGCTC 62.822 72.222 32.93 21.60 46.86 4.70
4264 5854 2.080286 CCGTTTAGGTCTCACTGGTG 57.920 55.000 0.00 0.00 34.51 4.17
4265 5855 1.429463 CGTTTAGGTCTCACTGGTGC 58.571 55.000 0.00 0.00 0.00 5.01
4266 5856 1.429463 GTTTAGGTCTCACTGGTGCG 58.571 55.000 0.00 0.00 0.00 5.34
4267 5857 1.000506 GTTTAGGTCTCACTGGTGCGA 59.999 52.381 0.00 0.00 0.00 5.10
4268 5858 0.601558 TTAGGTCTCACTGGTGCGAC 59.398 55.000 13.43 13.43 42.71 5.19
4270 5860 2.430921 GTCTCACTGGTGCGACCG 60.431 66.667 11.41 0.00 42.58 4.79
4271 5861 2.596338 TCTCACTGGTGCGACCGA 60.596 61.111 0.00 0.00 42.58 4.69
4272 5862 2.126307 CTCACTGGTGCGACCGAG 60.126 66.667 0.00 0.00 42.58 4.63
4273 5863 4.357947 TCACTGGTGCGACCGAGC 62.358 66.667 0.00 0.00 42.58 5.03
4301 5891 4.168291 CCCCGCTCTGCCCTCTTC 62.168 72.222 0.00 0.00 0.00 2.87
4302 5892 4.168291 CCCGCTCTGCCCTCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
4303 5893 3.080121 CCGCTCTGCCCTCTTCCT 61.080 66.667 0.00 0.00 0.00 3.36
4304 5894 2.664081 CCGCTCTGCCCTCTTCCTT 61.664 63.158 0.00 0.00 0.00 3.36
4305 5895 1.153469 CGCTCTGCCCTCTTCCTTC 60.153 63.158 0.00 0.00 0.00 3.46
4306 5896 1.612395 CGCTCTGCCCTCTTCCTTCT 61.612 60.000 0.00 0.00 0.00 2.85
4307 5897 0.177836 GCTCTGCCCTCTTCCTTCTC 59.822 60.000 0.00 0.00 0.00 2.87
4308 5898 0.829990 CTCTGCCCTCTTCCTTCTCC 59.170 60.000 0.00 0.00 0.00 3.71
4309 5899 0.415429 TCTGCCCTCTTCCTTCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
4310 5900 0.829990 CTGCCCTCTTCCTTCTCCTC 59.170 60.000 0.00 0.00 0.00 3.71
4311 5901 0.972983 TGCCCTCTTCCTTCTCCTCG 60.973 60.000 0.00 0.00 0.00 4.63
4312 5902 1.819905 CCCTCTTCCTTCTCCTCGC 59.180 63.158 0.00 0.00 0.00 5.03
4313 5903 1.435515 CCTCTTCCTTCTCCTCGCG 59.564 63.158 0.00 0.00 0.00 5.87
4314 5904 1.226831 CTCTTCCTTCTCCTCGCGC 60.227 63.158 0.00 0.00 0.00 6.86
4315 5905 2.202810 CTTCCTTCTCCTCGCGCC 60.203 66.667 0.00 0.00 0.00 6.53
4316 5906 3.724914 CTTCCTTCTCCTCGCGCCC 62.725 68.421 0.00 0.00 0.00 6.13
4317 5907 4.761058 TCCTTCTCCTCGCGCCCT 62.761 66.667 0.00 0.00 0.00 5.19
4318 5908 4.214327 CCTTCTCCTCGCGCCCTC 62.214 72.222 0.00 0.00 0.00 4.30
4319 5909 4.560856 CTTCTCCTCGCGCCCTCG 62.561 72.222 0.00 0.00 39.07 4.63
4380 5970 4.626081 GCCGCCGTAGCCATGGAT 62.626 66.667 18.40 13.25 34.57 3.41
4381 5971 2.357517 CCGCCGTAGCCATGGATC 60.358 66.667 18.40 2.37 34.57 3.36
4382 5972 2.734723 CGCCGTAGCCATGGATCG 60.735 66.667 18.40 14.94 34.57 3.69
4383 5973 2.734591 GCCGTAGCCATGGATCGA 59.265 61.111 18.40 0.00 31.77 3.59
4384 5974 1.069090 GCCGTAGCCATGGATCGAA 59.931 57.895 18.40 0.00 31.77 3.71
4385 5975 1.222115 GCCGTAGCCATGGATCGAAC 61.222 60.000 18.40 3.16 31.77 3.95
4386 5976 0.389391 CCGTAGCCATGGATCGAACT 59.611 55.000 18.40 4.01 31.77 3.01
4387 5977 1.491670 CGTAGCCATGGATCGAACTG 58.508 55.000 18.40 0.00 0.00 3.16
4388 5978 1.221414 GTAGCCATGGATCGAACTGC 58.779 55.000 18.40 1.08 0.00 4.40
4389 5979 1.123077 TAGCCATGGATCGAACTGCT 58.877 50.000 18.40 4.09 0.00 4.24
4390 5980 0.254178 AGCCATGGATCGAACTGCTT 59.746 50.000 18.40 0.00 0.00 3.91
4391 5981 1.486310 AGCCATGGATCGAACTGCTTA 59.514 47.619 18.40 0.00 0.00 3.09
4392 5982 1.869767 GCCATGGATCGAACTGCTTAG 59.130 52.381 18.40 0.00 0.00 2.18
4393 5983 2.487934 CCATGGATCGAACTGCTTAGG 58.512 52.381 5.56 0.00 0.00 2.69
4394 5984 1.869767 CATGGATCGAACTGCTTAGGC 59.130 52.381 0.00 0.00 39.26 3.93
4395 5985 0.179111 TGGATCGAACTGCTTAGGCG 60.179 55.000 0.00 0.00 42.25 5.52
4396 5986 1.491505 GGATCGAACTGCTTAGGCGC 61.492 60.000 0.00 0.00 42.25 6.53
4397 5987 0.528684 GATCGAACTGCTTAGGCGCT 60.529 55.000 7.64 0.00 42.25 5.92
4398 5988 0.807667 ATCGAACTGCTTAGGCGCTG 60.808 55.000 7.64 0.00 42.25 5.18
4399 5989 1.738099 CGAACTGCTTAGGCGCTGT 60.738 57.895 7.64 0.00 42.74 4.40
4400 5990 1.687494 CGAACTGCTTAGGCGCTGTC 61.687 60.000 7.64 0.00 40.52 3.51
4401 5991 0.670546 GAACTGCTTAGGCGCTGTCA 60.671 55.000 7.64 0.00 40.52 3.58
4402 5992 0.951040 AACTGCTTAGGCGCTGTCAC 60.951 55.000 7.64 0.00 40.52 3.67
4403 5993 2.047274 TGCTTAGGCGCTGTCACC 60.047 61.111 7.64 0.00 42.25 4.02
4404 5994 2.266055 GCTTAGGCGCTGTCACCT 59.734 61.111 7.64 0.00 40.24 4.00
4405 5995 1.811679 GCTTAGGCGCTGTCACCTC 60.812 63.158 7.64 0.00 37.50 3.85
4406 5996 1.153549 CTTAGGCGCTGTCACCTCC 60.154 63.158 7.64 0.00 37.50 4.30
4407 5997 2.579684 CTTAGGCGCTGTCACCTCCC 62.580 65.000 7.64 0.00 37.50 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.460311 ACCGGACTGTATGTAGCAGC 59.540 55.000 9.46 0.00 37.47 5.25
50 51 1.067212 GGACCGGACTGTATGTAGCAG 59.933 57.143 9.46 0.00 39.67 4.24
51 52 1.108776 GGACCGGACTGTATGTAGCA 58.891 55.000 9.46 0.00 0.00 3.49
52 53 1.067212 CTGGACCGGACTGTATGTAGC 59.933 57.143 9.46 0.00 0.00 3.58
53 54 1.067212 GCTGGACCGGACTGTATGTAG 59.933 57.143 9.46 0.00 0.00 2.74
55 56 0.902984 TGCTGGACCGGACTGTATGT 60.903 55.000 9.46 0.00 0.00 2.29
58 59 1.532078 TGTGCTGGACCGGACTGTA 60.532 57.895 9.46 1.04 0.00 2.74
60 61 2.357517 GTGTGCTGGACCGGACTG 60.358 66.667 9.46 5.91 0.00 3.51
61 62 3.626924 GGTGTGCTGGACCGGACT 61.627 66.667 9.46 0.00 0.00 3.85
62 63 3.936203 TGGTGTGCTGGACCGGAC 61.936 66.667 9.46 0.00 36.12 4.79
63 64 3.936203 GTGGTGTGCTGGACCGGA 61.936 66.667 9.46 0.00 36.12 5.14
65 66 4.248842 TGGTGGTGTGCTGGACCG 62.249 66.667 0.00 0.00 36.12 4.79
66 67 2.594592 GTGGTGGTGTGCTGGACC 60.595 66.667 0.00 0.00 0.00 4.46
67 68 2.186826 GTGTGGTGGTGTGCTGGAC 61.187 63.158 0.00 0.00 0.00 4.02
68 69 2.191908 GTGTGGTGGTGTGCTGGA 59.808 61.111 0.00 0.00 0.00 3.86
69 70 2.188829 CAGTGTGGTGGTGTGCTGG 61.189 63.158 0.00 0.00 0.00 4.85
70 71 0.535780 ATCAGTGTGGTGGTGTGCTG 60.536 55.000 0.00 0.00 0.00 4.41
71 72 0.183492 AATCAGTGTGGTGGTGTGCT 59.817 50.000 0.00 0.00 0.00 4.40
72 73 0.311790 CAATCAGTGTGGTGGTGTGC 59.688 55.000 0.00 0.00 0.00 4.57
73 74 0.953727 CCAATCAGTGTGGTGGTGTG 59.046 55.000 0.00 0.00 0.00 3.82
74 75 0.843309 TCCAATCAGTGTGGTGGTGT 59.157 50.000 8.63 0.00 37.43 4.16
75 76 2.205022 ATCCAATCAGTGTGGTGGTG 57.795 50.000 8.63 0.00 37.43 4.17
76 77 2.517959 CAATCCAATCAGTGTGGTGGT 58.482 47.619 8.63 0.00 37.43 4.16
77 78 1.203052 GCAATCCAATCAGTGTGGTGG 59.797 52.381 0.06 2.14 37.43 4.61
78 79 2.165167 AGCAATCCAATCAGTGTGGTG 58.835 47.619 0.06 0.00 37.43 4.17
79 80 2.592102 AGCAATCCAATCAGTGTGGT 57.408 45.000 0.06 0.00 37.43 4.16
80 81 3.376234 CACTAGCAATCCAATCAGTGTGG 59.624 47.826 0.00 0.00 37.51 4.17
81 82 4.256110 TCACTAGCAATCCAATCAGTGTG 58.744 43.478 0.00 0.00 35.88 3.82
116 117 2.531376 GCGGCGATTTTACGGAGGG 61.531 63.158 12.98 0.00 0.00 4.30
122 123 0.163146 GATAGCGGCGGCGATTTTAC 59.837 55.000 36.87 16.19 46.35 2.01
162 163 1.000274 GTGCACCAAGCTTAACAAGGG 60.000 52.381 5.22 0.00 45.94 3.95
187 190 4.144297 TCGTAGTACCTACAAGTTGGTGT 58.856 43.478 15.08 3.81 39.02 4.16
222 225 2.261671 CCCTCCGTGTCCGAACAG 59.738 66.667 0.00 0.00 35.64 3.16
224 227 4.754667 GCCCCTCCGTGTCCGAAC 62.755 72.222 0.00 0.00 35.63 3.95
228 231 4.394712 CACAGCCCCTCCGTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
229 232 2.676163 AAACACAGCCCCTCCGTGTC 62.676 60.000 0.00 0.00 42.85 3.67
230 233 2.279037 AAAACACAGCCCCTCCGTGT 62.279 55.000 0.00 0.00 45.48 4.49
245 368 2.479837 CCGCAAAGGGGAAAAGAAAAC 58.520 47.619 0.00 0.00 37.91 2.43
246 369 2.900716 CCGCAAAGGGGAAAAGAAAA 57.099 45.000 0.00 0.00 37.91 2.29
280 403 7.736893 AGTGGTACCATTTCATCTATACCTTC 58.263 38.462 19.72 0.00 34.42 3.46
302 425 2.733552 GTGCAGACGATGGCATATAGTG 59.266 50.000 0.00 0.00 42.75 2.74
304 427 2.341257 GGTGCAGACGATGGCATATAG 58.659 52.381 0.00 0.00 42.75 1.31
306 429 0.250467 GGGTGCAGACGATGGCATAT 60.250 55.000 0.00 0.00 42.75 1.78
307 430 1.146041 GGGTGCAGACGATGGCATA 59.854 57.895 0.00 0.00 42.75 3.14
308 431 2.124570 GGGTGCAGACGATGGCAT 60.125 61.111 0.00 0.00 42.75 4.40
309 432 4.758251 CGGGTGCAGACGATGGCA 62.758 66.667 4.04 0.00 37.77 4.92
310 433 4.760047 ACGGGTGCAGACGATGGC 62.760 66.667 15.91 0.00 0.00 4.40
311 434 2.047274 AACGGGTGCAGACGATGG 60.047 61.111 15.91 0.00 0.00 3.51
312 435 0.948623 TTGAACGGGTGCAGACGATG 60.949 55.000 15.91 0.00 0.00 3.84
313 436 0.949105 GTTGAACGGGTGCAGACGAT 60.949 55.000 15.91 4.78 0.00 3.73
314 437 1.593209 GTTGAACGGGTGCAGACGA 60.593 57.895 15.91 0.00 0.00 4.20
315 438 1.594293 AGTTGAACGGGTGCAGACG 60.594 57.895 8.28 8.28 0.00 4.18
318 441 0.738389 AAACAGTTGAACGGGTGCAG 59.262 50.000 0.00 0.00 0.00 4.41
323 446 5.880054 AGATCATTAAACAGTTGAACGGG 57.120 39.130 0.00 0.00 0.00 5.28
324 447 6.314784 GGAAGATCATTAAACAGTTGAACGG 58.685 40.000 0.00 0.00 0.00 4.44
340 463 5.789521 TGTCTAATTGTTCACGGAAGATCA 58.210 37.500 0.00 0.00 0.00 2.92
354 477 5.914085 GAGAATCCCACGATGTCTAATTG 57.086 43.478 0.00 0.00 0.00 2.32
463 589 3.335729 GCCCGGGGGAAGGAAGAA 61.336 66.667 25.28 0.00 37.50 2.52
507 635 0.461163 CGGGGCGTGTGATTGTGATA 60.461 55.000 0.00 0.00 0.00 2.15
509 637 2.358125 CGGGGCGTGTGATTGTGA 60.358 61.111 0.00 0.00 0.00 3.58
514 642 4.760047 GTCAGCGGGGCGTGTGAT 62.760 66.667 0.00 0.00 0.00 3.06
749 885 2.124312 GGTAGAGGGGGTGTGGGT 59.876 66.667 0.00 0.00 0.00 4.51
750 886 3.081409 CGGTAGAGGGGGTGTGGG 61.081 72.222 0.00 0.00 0.00 4.61
751 887 3.782443 GCGGTAGAGGGGGTGTGG 61.782 72.222 0.00 0.00 0.00 4.17
752 888 3.782443 GGCGGTAGAGGGGGTGTG 61.782 72.222 0.00 0.00 0.00 3.82
753 889 4.326227 TGGCGGTAGAGGGGGTGT 62.326 66.667 0.00 0.00 0.00 4.16
754 890 3.782443 GTGGCGGTAGAGGGGGTG 61.782 72.222 0.00 0.00 0.00 4.61
755 891 4.007323 AGTGGCGGTAGAGGGGGT 62.007 66.667 0.00 0.00 0.00 4.95
756 892 3.470888 CAGTGGCGGTAGAGGGGG 61.471 72.222 0.00 0.00 0.00 5.40
867 1010 3.293337 GGTGTTTTCCGGGCCTTTATAT 58.707 45.455 0.84 0.00 0.00 0.86
1311 1485 3.755628 GCGCCCTCGGTGTAGTGA 61.756 66.667 0.00 0.00 35.34 3.41
1407 1581 2.754946 AATTAACGCGGAAGAGGTGA 57.245 45.000 12.47 0.00 34.13 4.02
1446 1779 0.178068 GGCCCAGATCTGAACGCTAA 59.822 55.000 24.62 0.00 0.00 3.09
1493 1826 7.492524 TGACAACCTGAGATCACATCTATAAC 58.507 38.462 0.00 0.00 40.38 1.89
1495 1828 7.846101 ATGACAACCTGAGATCACATCTATA 57.154 36.000 0.00 0.00 40.38 1.31
1496 1829 6.744175 ATGACAACCTGAGATCACATCTAT 57.256 37.500 0.00 0.00 40.38 1.98
1497 1830 6.550938 AATGACAACCTGAGATCACATCTA 57.449 37.500 0.00 0.00 40.38 1.98
1499 1832 5.233050 CGTAATGACAACCTGAGATCACATC 59.767 44.000 0.00 0.00 0.00 3.06
1500 1833 5.105351 TCGTAATGACAACCTGAGATCACAT 60.105 40.000 0.00 0.00 0.00 3.21
1501 1834 4.219725 TCGTAATGACAACCTGAGATCACA 59.780 41.667 0.00 0.00 0.00 3.58
1502 1835 4.744570 TCGTAATGACAACCTGAGATCAC 58.255 43.478 0.00 0.00 0.00 3.06
1523 1856 1.852067 AATGCCAAACAGACGCCGTC 61.852 55.000 9.71 9.71 0.00 4.79
1548 1881 0.525761 TAAATGCCAAACAGCGCCTC 59.474 50.000 2.29 0.00 34.65 4.70
1549 1882 1.135024 CATAAATGCCAAACAGCGCCT 60.135 47.619 2.29 0.00 34.65 5.52
1564 1897 0.464735 ATTAGCACGCCCCGCATAAA 60.465 50.000 0.00 0.00 0.00 1.40
1565 1898 0.464735 AATTAGCACGCCCCGCATAA 60.465 50.000 0.00 0.00 0.00 1.90
1566 1899 1.147376 AATTAGCACGCCCCGCATA 59.853 52.632 0.00 0.00 0.00 3.14
1567 1900 2.124320 AATTAGCACGCCCCGCAT 60.124 55.556 0.00 0.00 0.00 4.73
1568 1901 3.130819 CAATTAGCACGCCCCGCA 61.131 61.111 0.00 0.00 0.00 5.69
1569 1902 2.696759 AACAATTAGCACGCCCCGC 61.697 57.895 0.00 0.00 0.00 6.13
1570 1903 1.136565 CAACAATTAGCACGCCCCG 59.863 57.895 0.00 0.00 0.00 5.73
1571 1904 1.102978 ATCAACAATTAGCACGCCCC 58.897 50.000 0.00 0.00 0.00 5.80
1572 1905 3.315191 ACATATCAACAATTAGCACGCCC 59.685 43.478 0.00 0.00 0.00 6.13
1573 1906 4.552166 ACATATCAACAATTAGCACGCC 57.448 40.909 0.00 0.00 0.00 5.68
1574 1907 5.568482 TCAACATATCAACAATTAGCACGC 58.432 37.500 0.00 0.00 0.00 5.34
1575 1908 7.633621 AGATCAACATATCAACAATTAGCACG 58.366 34.615 0.00 0.00 0.00 5.34
1615 1948 5.581126 TTCATGCAGAAAACACAGAACTT 57.419 34.783 0.00 0.00 32.05 2.66
1627 1960 9.361315 CAGTTAAATGATCAAATTCATGCAGAA 57.639 29.630 0.00 0.00 41.28 3.02
1727 2163 9.886132 TTCCACTCTTATGTTCTAAATTAGGAC 57.114 33.333 4.51 4.51 34.75 3.85
1731 2167 9.383519 CAGCTTCCACTCTTATGTTCTAAATTA 57.616 33.333 0.00 0.00 0.00 1.40
1768 2207 3.070446 CCACACAGTAACAGGACAACCTA 59.930 47.826 0.00 0.00 45.94 3.08
1802 2241 5.373812 AAGCTAAGGTGCCAACATACTAT 57.626 39.130 0.00 0.00 0.00 2.12
1815 2254 3.591977 ACACCATCCCTAAAAGCTAAGGT 59.408 43.478 8.44 0.00 0.00 3.50
1826 2269 1.153188 CGCATGCACACCATCCCTA 60.153 57.895 19.57 0.00 29.71 3.53
1833 2276 1.298157 TTGACTAGCGCATGCACACC 61.298 55.000 19.57 2.43 46.23 4.16
1924 2369 9.675464 CCAATCCAACACTACCTACTTTAATAA 57.325 33.333 0.00 0.00 0.00 1.40
2078 2531 4.637977 GGAATGGAGCTAAGGACTTCTTTG 59.362 45.833 0.00 0.00 36.93 2.77
2105 2558 8.387813 AGTACACCAAAATAACTAGGGATGAAA 58.612 33.333 0.00 0.00 0.00 2.69
2106 2559 7.924541 AGTACACCAAAATAACTAGGGATGAA 58.075 34.615 0.00 0.00 0.00 2.57
2142 2597 2.627699 CAAACATGTTACTTGGGCCTGT 59.372 45.455 12.39 6.54 0.00 4.00
2233 2688 3.864789 ACTCCAAGGACACAGACATTT 57.135 42.857 0.00 0.00 0.00 2.32
2235 2690 4.836825 CAATACTCCAAGGACACAGACAT 58.163 43.478 0.00 0.00 0.00 3.06
2239 2694 3.005554 CAGCAATACTCCAAGGACACAG 58.994 50.000 0.00 0.00 0.00 3.66
2254 2709 3.960571 AGAGTACAAAGGATGCAGCAAT 58.039 40.909 3.51 0.00 0.00 3.56
2321 2782 9.590451 AAATAAAGCCACATCATTATTCACAAG 57.410 29.630 0.00 0.00 30.01 3.16
2334 2795 5.488262 AAAGGAAGCAAATAAAGCCACAT 57.512 34.783 0.00 0.00 0.00 3.21
2503 2964 2.935849 TGTAGCATTGTATGGCTCAACG 59.064 45.455 0.00 0.00 41.41 4.10
2682 4264 8.028354 CCAACTGAACATAAACTTATGCATGAA 58.972 33.333 10.16 0.00 43.30 2.57
2684 4266 7.537715 TCCAACTGAACATAAACTTATGCATG 58.462 34.615 10.16 0.00 43.30 4.06
2685 4267 7.701539 TCCAACTGAACATAAACTTATGCAT 57.298 32.000 3.79 3.79 43.30 3.96
2686 4268 7.230510 ACTTCCAACTGAACATAAACTTATGCA 59.769 33.333 8.98 0.00 43.30 3.96
2687 4269 7.538678 CACTTCCAACTGAACATAAACTTATGC 59.461 37.037 8.98 0.00 43.30 3.14
2688 4270 8.023128 CCACTTCCAACTGAACATAAACTTATG 58.977 37.037 7.73 7.73 44.66 1.90
2689 4271 7.942341 TCCACTTCCAACTGAACATAAACTTAT 59.058 33.333 0.00 0.00 0.00 1.73
2690 4272 7.227910 GTCCACTTCCAACTGAACATAAACTTA 59.772 37.037 0.00 0.00 0.00 2.24
2691 4273 6.039382 GTCCACTTCCAACTGAACATAAACTT 59.961 38.462 0.00 0.00 0.00 2.66
2692 4274 5.531287 GTCCACTTCCAACTGAACATAAACT 59.469 40.000 0.00 0.00 0.00 2.66
2693 4275 5.298276 TGTCCACTTCCAACTGAACATAAAC 59.702 40.000 0.00 0.00 0.00 2.01
2694 4276 5.298276 GTGTCCACTTCCAACTGAACATAAA 59.702 40.000 0.00 0.00 0.00 1.40
2715 4297 4.357918 AGAACCAAAGCTGTATCAGTGT 57.642 40.909 0.00 0.00 33.43 3.55
2907 4489 1.874739 CGGTACATTTGTGACCCACGT 60.875 52.381 0.00 0.00 37.14 4.49
3428 5010 4.512914 GGGGAGCAGGGCACATCC 62.513 72.222 0.00 0.00 0.00 3.51
3430 5012 3.267233 TTGGGGAGCAGGGCACAT 61.267 61.111 0.00 0.00 0.00 3.21
3431 5013 4.284550 GTTGGGGAGCAGGGCACA 62.285 66.667 0.00 0.00 0.00 4.57
3442 5024 1.073923 GGACATATAGCTGGGTTGGGG 59.926 57.143 0.00 0.00 0.00 4.96
3443 5025 1.073923 GGGACATATAGCTGGGTTGGG 59.926 57.143 0.00 0.00 0.00 4.12
3447 5029 0.836400 CGGGGGACATATAGCTGGGT 60.836 60.000 0.00 0.00 0.00 4.51
3516 5098 1.507141 GCCACACGAGGAAACCACAG 61.507 60.000 0.00 0.00 0.00 3.66
3529 5111 2.022129 CGACTCGTCCAAGCCACAC 61.022 63.158 0.00 0.00 0.00 3.82
3541 5123 2.870161 CGACGCAACCTCGACTCG 60.870 66.667 0.00 0.00 32.65 4.18
3557 5139 0.655733 ACAAAACGGAGCACAAGACG 59.344 50.000 0.00 0.00 0.00 4.18
3558 5140 3.955771 TTACAAAACGGAGCACAAGAC 57.044 42.857 0.00 0.00 0.00 3.01
3559 5141 5.277825 CAAATTACAAAACGGAGCACAAGA 58.722 37.500 0.00 0.00 0.00 3.02
3603 5185 1.009389 CGCGGAACAAGACAGACTCC 61.009 60.000 0.00 0.00 0.00 3.85
3604 5186 0.318784 ACGCGGAACAAGACAGACTC 60.319 55.000 12.47 0.00 0.00 3.36
3661 5243 1.734477 CACTCGACAGTTGAGGCCG 60.734 63.158 20.32 6.31 37.79 6.13
3667 5249 0.600557 AGGAGAGCACTCGACAGTTG 59.399 55.000 5.02 0.00 43.44 3.16
3688 5270 2.254350 CGACGACGACCAGCTCAA 59.746 61.111 0.00 0.00 42.66 3.02
3689 5271 2.962827 GACGACGACGACCAGCTCA 61.963 63.158 15.32 0.00 42.66 4.26
3703 5288 2.034939 TCAGAACTTACAAAGGCGACGA 59.965 45.455 0.00 0.00 0.00 4.20
3705 5290 3.128349 TGTCAGAACTTACAAAGGCGAC 58.872 45.455 0.00 0.00 0.00 5.19
3706 5291 3.462483 TGTCAGAACTTACAAAGGCGA 57.538 42.857 0.00 0.00 0.00 5.54
3707 5292 3.560068 ACTTGTCAGAACTTACAAAGGCG 59.440 43.478 3.74 0.00 35.32 5.52
3708 5293 6.803154 ATACTTGTCAGAACTTACAAAGGC 57.197 37.500 3.74 0.00 35.32 4.35
3769 5354 8.964476 ATAATGAGAAACCACTACCAATACTG 57.036 34.615 0.00 0.00 0.00 2.74
3871 5457 3.623510 GCTGGTACCAAGAATACAAGAGC 59.376 47.826 17.11 7.32 0.00 4.09
3913 5500 0.917259 GAACAGCACGCACTAGATCG 59.083 55.000 0.00 1.48 0.00 3.69
3914 5501 2.285827 AGAACAGCACGCACTAGATC 57.714 50.000 0.00 0.00 0.00 2.75
3936 5526 0.941542 CACGAAGAACGAGGCCAAAA 59.058 50.000 5.01 0.00 45.77 2.44
3939 5529 0.599204 GTTCACGAAGAACGAGGCCA 60.599 55.000 5.01 0.00 46.36 5.36
3940 5530 2.151295 GTTCACGAAGAACGAGGCC 58.849 57.895 0.00 0.00 46.36 5.19
4010 5600 9.722056 CTATTTCTGTGCAATTTACTCCAATAC 57.278 33.333 0.00 0.00 0.00 1.89
4011 5601 8.405531 GCTATTTCTGTGCAATTTACTCCAATA 58.594 33.333 0.00 0.00 0.00 1.90
4012 5602 7.093814 TGCTATTTCTGTGCAATTTACTCCAAT 60.094 33.333 0.00 0.00 33.48 3.16
4013 5603 6.208402 TGCTATTTCTGTGCAATTTACTCCAA 59.792 34.615 0.00 0.00 33.48 3.53
4014 5604 5.709631 TGCTATTTCTGTGCAATTTACTCCA 59.290 36.000 0.00 0.00 33.48 3.86
4015 5605 6.030228 GTGCTATTTCTGTGCAATTTACTCC 58.970 40.000 0.00 0.00 38.50 3.85
4016 5606 6.611381 TGTGCTATTTCTGTGCAATTTACTC 58.389 36.000 0.00 0.00 38.50 2.59
4017 5607 6.573664 TGTGCTATTTCTGTGCAATTTACT 57.426 33.333 0.00 0.00 38.50 2.24
4018 5608 7.816945 ATTGTGCTATTTCTGTGCAATTTAC 57.183 32.000 0.00 0.00 38.50 2.01
4019 5609 7.331440 CCAATTGTGCTATTTCTGTGCAATTTA 59.669 33.333 4.43 0.00 38.50 1.40
4020 5610 6.148150 CCAATTGTGCTATTTCTGTGCAATTT 59.852 34.615 4.43 0.00 38.50 1.82
4021 5611 5.640357 CCAATTGTGCTATTTCTGTGCAATT 59.360 36.000 4.43 0.00 38.50 2.32
4022 5612 5.172934 CCAATTGTGCTATTTCTGTGCAAT 58.827 37.500 4.43 0.00 38.50 3.56
4023 5613 4.558178 CCAATTGTGCTATTTCTGTGCAA 58.442 39.130 4.43 0.00 38.50 4.08
4024 5614 3.056678 CCCAATTGTGCTATTTCTGTGCA 60.057 43.478 4.43 0.00 0.00 4.57
4025 5615 3.514645 CCCAATTGTGCTATTTCTGTGC 58.485 45.455 4.43 0.00 0.00 4.57
4026 5616 3.676873 GCCCCAATTGTGCTATTTCTGTG 60.677 47.826 4.43 0.00 0.00 3.66
4027 5617 2.497273 GCCCCAATTGTGCTATTTCTGT 59.503 45.455 4.43 0.00 0.00 3.41
4028 5618 2.496871 TGCCCCAATTGTGCTATTTCTG 59.503 45.455 15.61 0.00 0.00 3.02
4029 5619 2.818921 TGCCCCAATTGTGCTATTTCT 58.181 42.857 15.61 0.00 0.00 2.52
4030 5620 3.825143 ATGCCCCAATTGTGCTATTTC 57.175 42.857 15.61 0.00 0.00 2.17
4031 5621 3.370739 CCAATGCCCCAATTGTGCTATTT 60.371 43.478 15.61 6.72 36.06 1.40
4032 5622 2.171027 CCAATGCCCCAATTGTGCTATT 59.829 45.455 15.61 11.35 36.06 1.73
4033 5623 1.764134 CCAATGCCCCAATTGTGCTAT 59.236 47.619 15.61 7.25 36.06 2.97
4034 5624 1.193323 CCAATGCCCCAATTGTGCTA 58.807 50.000 15.61 5.65 36.06 3.49
4035 5625 0.544833 TCCAATGCCCCAATTGTGCT 60.545 50.000 15.61 2.47 36.06 4.40
4036 5626 0.324285 TTCCAATGCCCCAATTGTGC 59.676 50.000 4.43 7.43 36.06 4.57
4037 5627 2.224475 TGTTTCCAATGCCCCAATTGTG 60.224 45.455 4.43 0.00 36.06 3.33
4038 5628 2.038820 CTGTTTCCAATGCCCCAATTGT 59.961 45.455 4.43 0.00 36.06 2.71
4039 5629 2.038820 ACTGTTTCCAATGCCCCAATTG 59.961 45.455 0.00 0.00 37.30 2.32
4040 5630 2.337849 ACTGTTTCCAATGCCCCAATT 58.662 42.857 0.00 0.00 0.00 2.32
4041 5631 2.028561 ACTGTTTCCAATGCCCCAAT 57.971 45.000 0.00 0.00 0.00 3.16
4042 5632 1.799933 AACTGTTTCCAATGCCCCAA 58.200 45.000 0.00 0.00 0.00 4.12
4043 5633 1.415659 CAAACTGTTTCCAATGCCCCA 59.584 47.619 2.13 0.00 0.00 4.96
4044 5634 1.270785 CCAAACTGTTTCCAATGCCCC 60.271 52.381 2.13 0.00 0.00 5.80
4045 5635 1.416030 ACCAAACTGTTTCCAATGCCC 59.584 47.619 2.13 0.00 0.00 5.36
4046 5636 2.908688 ACCAAACTGTTTCCAATGCC 57.091 45.000 2.13 0.00 0.00 4.40
4047 5637 3.068873 TGGTACCAAACTGTTTCCAATGC 59.931 43.478 13.60 0.00 0.00 3.56
4048 5638 4.927978 TGGTACCAAACTGTTTCCAATG 57.072 40.909 13.60 0.00 0.00 2.82
4049 5639 5.205056 TCTTGGTACCAAACTGTTTCCAAT 58.795 37.500 26.90 3.53 35.33 3.16
4050 5640 4.601084 TCTTGGTACCAAACTGTTTCCAA 58.399 39.130 26.90 17.83 35.33 3.53
4051 5641 4.237976 TCTTGGTACCAAACTGTTTCCA 57.762 40.909 26.90 5.13 35.33 3.53
4052 5642 5.300792 TCAATCTTGGTACCAAACTGTTTCC 59.699 40.000 26.90 2.44 35.33 3.13
4053 5643 6.385649 TCAATCTTGGTACCAAACTGTTTC 57.614 37.500 26.90 0.00 35.33 2.78
4054 5644 6.976934 ATCAATCTTGGTACCAAACTGTTT 57.023 33.333 26.90 14.10 35.33 2.83
4055 5645 8.650143 ATTATCAATCTTGGTACCAAACTGTT 57.350 30.769 26.90 19.02 35.33 3.16
4056 5646 8.650143 AATTATCAATCTTGGTACCAAACTGT 57.350 30.769 26.90 13.68 35.33 3.55
4057 5647 9.927668 AAAATTATCAATCTTGGTACCAAACTG 57.072 29.630 26.90 21.77 35.33 3.16
4062 5652 9.233649 ACGTAAAAATTATCAATCTTGGTACCA 57.766 29.630 11.60 11.60 0.00 3.25
4063 5653 9.498307 CACGTAAAAATTATCAATCTTGGTACC 57.502 33.333 4.43 4.43 0.00 3.34
4066 5656 8.788806 TGACACGTAAAAATTATCAATCTTGGT 58.211 29.630 0.00 0.00 0.00 3.67
4067 5657 9.277565 CTGACACGTAAAAATTATCAATCTTGG 57.722 33.333 0.00 0.00 0.00 3.61
4068 5658 9.825972 ACTGACACGTAAAAATTATCAATCTTG 57.174 29.630 0.00 0.00 0.00 3.02
4078 5668 9.825972 CAATCTTGATACTGACACGTAAAAATT 57.174 29.630 0.00 0.00 0.00 1.82
4079 5669 8.450964 CCAATCTTGATACTGACACGTAAAAAT 58.549 33.333 0.00 0.00 0.00 1.82
4080 5670 7.094975 CCCAATCTTGATACTGACACGTAAAAA 60.095 37.037 0.00 0.00 0.00 1.94
4081 5671 6.370442 CCCAATCTTGATACTGACACGTAAAA 59.630 38.462 0.00 0.00 0.00 1.52
4082 5672 5.872617 CCCAATCTTGATACTGACACGTAAA 59.127 40.000 0.00 0.00 0.00 2.01
4083 5673 5.416083 CCCAATCTTGATACTGACACGTAA 58.584 41.667 0.00 0.00 0.00 3.18
4084 5674 4.142026 CCCCAATCTTGATACTGACACGTA 60.142 45.833 0.00 0.00 0.00 3.57
4085 5675 3.369471 CCCCAATCTTGATACTGACACGT 60.369 47.826 0.00 0.00 0.00 4.49
4086 5676 3.198068 CCCCAATCTTGATACTGACACG 58.802 50.000 0.00 0.00 0.00 4.49
4087 5677 2.945668 GCCCCAATCTTGATACTGACAC 59.054 50.000 0.00 0.00 0.00 3.67
4088 5678 2.419990 CGCCCCAATCTTGATACTGACA 60.420 50.000 0.00 0.00 0.00 3.58
4089 5679 2.158957 TCGCCCCAATCTTGATACTGAC 60.159 50.000 0.00 0.00 0.00 3.51
4090 5680 2.103094 CTCGCCCCAATCTTGATACTGA 59.897 50.000 0.00 0.00 0.00 3.41
4091 5681 2.487934 CTCGCCCCAATCTTGATACTG 58.512 52.381 0.00 0.00 0.00 2.74
4092 5682 1.202698 GCTCGCCCCAATCTTGATACT 60.203 52.381 0.00 0.00 0.00 2.12
4093 5683 1.230324 GCTCGCCCCAATCTTGATAC 58.770 55.000 0.00 0.00 0.00 2.24
4094 5684 0.108585 GGCTCGCCCCAATCTTGATA 59.891 55.000 0.00 0.00 0.00 2.15
4095 5685 1.152881 GGCTCGCCCCAATCTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
4096 5686 2.272146 GGCTCGCCCCAATCTTGA 59.728 61.111 0.00 0.00 0.00 3.02
4097 5687 3.204827 CGGCTCGCCCCAATCTTG 61.205 66.667 1.72 0.00 0.00 3.02
4098 5688 3.268103 AACGGCTCGCCCCAATCTT 62.268 57.895 1.72 0.00 0.00 2.40
4099 5689 3.717294 AACGGCTCGCCCCAATCT 61.717 61.111 1.72 0.00 0.00 2.40
4100 5690 3.508840 CAACGGCTCGCCCCAATC 61.509 66.667 1.72 0.00 0.00 2.67
4105 5695 3.492311 TTTTTGCAACGGCTCGCCC 62.492 57.895 0.00 0.00 41.91 6.13
4106 5696 2.026879 TTTTTGCAACGGCTCGCC 59.973 55.556 0.00 0.00 41.91 5.54
4120 5710 8.219105 CGTATAGAACGCACTTTTAGTCTTTTT 58.781 33.333 0.00 0.00 46.10 1.94
4121 5711 7.727017 CGTATAGAACGCACTTTTAGTCTTTT 58.273 34.615 0.00 0.00 46.10 2.27
4122 5712 7.274442 CGTATAGAACGCACTTTTAGTCTTT 57.726 36.000 0.00 0.00 46.10 2.52
4123 5713 6.866179 CGTATAGAACGCACTTTTAGTCTT 57.134 37.500 0.00 0.00 46.10 3.01
4137 5727 9.011407 CAGTTTCTCTGTCAATACGTATAGAAC 57.989 37.037 8.83 8.04 39.17 3.01
4138 5728 8.953313 TCAGTTTCTCTGTCAATACGTATAGAA 58.047 33.333 8.83 9.97 43.97 2.10
4139 5729 8.396390 GTCAGTTTCTCTGTCAATACGTATAGA 58.604 37.037 8.83 7.03 43.97 1.98
4140 5730 7.644551 GGTCAGTTTCTCTGTCAATACGTATAG 59.355 40.741 8.83 2.53 43.97 1.31
4141 5731 7.478322 GGTCAGTTTCTCTGTCAATACGTATA 58.522 38.462 8.83 0.00 43.97 1.47
4142 5732 6.331061 GGTCAGTTTCTCTGTCAATACGTAT 58.669 40.000 1.14 1.14 43.97 3.06
4143 5733 5.618418 CGGTCAGTTTCTCTGTCAATACGTA 60.618 44.000 0.00 0.00 43.97 3.57
4144 5734 4.557205 GGTCAGTTTCTCTGTCAATACGT 58.443 43.478 0.00 0.00 43.97 3.57
4145 5735 3.608506 CGGTCAGTTTCTCTGTCAATACG 59.391 47.826 0.00 0.00 43.97 3.06
4146 5736 3.927142 CCGGTCAGTTTCTCTGTCAATAC 59.073 47.826 0.00 0.00 43.97 1.89
4147 5737 3.576982 ACCGGTCAGTTTCTCTGTCAATA 59.423 43.478 0.00 0.00 43.97 1.90
4148 5738 2.368875 ACCGGTCAGTTTCTCTGTCAAT 59.631 45.455 0.00 0.00 43.97 2.57
4149 5739 1.760613 ACCGGTCAGTTTCTCTGTCAA 59.239 47.619 0.00 0.00 43.97 3.18
4150 5740 1.410004 ACCGGTCAGTTTCTCTGTCA 58.590 50.000 0.00 0.00 43.97 3.58
4151 5741 2.135933 CAACCGGTCAGTTTCTCTGTC 58.864 52.381 8.04 0.00 43.97 3.51
4152 5742 1.202651 CCAACCGGTCAGTTTCTCTGT 60.203 52.381 8.04 0.00 43.97 3.41
4153 5743 1.512926 CCAACCGGTCAGTTTCTCTG 58.487 55.000 8.04 0.00 44.85 3.35
4154 5744 0.396811 CCCAACCGGTCAGTTTCTCT 59.603 55.000 8.04 0.00 0.00 3.10
4155 5745 1.235281 GCCCAACCGGTCAGTTTCTC 61.235 60.000 8.04 0.00 0.00 2.87
4156 5746 1.228154 GCCCAACCGGTCAGTTTCT 60.228 57.895 8.04 0.00 0.00 2.52
4157 5747 2.265904 GGCCCAACCGGTCAGTTTC 61.266 63.158 8.04 0.00 35.67 2.78
4158 5748 2.203437 GGCCCAACCGGTCAGTTT 60.203 61.111 8.04 0.00 35.67 2.66
4159 5749 4.280019 GGGCCCAACCGGTCAGTT 62.280 66.667 19.95 0.00 38.37 3.16
4167 5757 4.966787 TGACAAGCGGGCCCAACC 62.967 66.667 24.92 9.50 37.93 3.77
4168 5758 3.365265 CTGACAAGCGGGCCCAAC 61.365 66.667 24.92 13.86 0.00 3.77
4169 5759 3.565214 TCTGACAAGCGGGCCCAA 61.565 61.111 24.92 0.00 0.00 4.12
4170 5760 4.329545 GTCTGACAAGCGGGCCCA 62.330 66.667 24.92 0.00 0.00 5.36
4174 5764 4.680237 TGGCGTCTGACAAGCGGG 62.680 66.667 8.73 0.00 0.00 6.13
4175 5765 3.414700 GTGGCGTCTGACAAGCGG 61.415 66.667 8.73 0.00 32.32 5.52
4176 5766 2.661537 TGTGGCGTCTGACAAGCG 60.662 61.111 8.73 0.00 32.32 4.68
4177 5767 1.595382 AGTGTGGCGTCTGACAAGC 60.595 57.895 8.73 3.92 32.32 4.01
4178 5768 1.224069 CCAGTGTGGCGTCTGACAAG 61.224 60.000 8.73 0.00 32.32 3.16
4179 5769 1.227527 CCAGTGTGGCGTCTGACAA 60.228 57.895 8.73 0.00 32.32 3.18
4180 5770 2.421314 CCAGTGTGGCGTCTGACA 59.579 61.111 8.73 0.00 34.02 3.58
4216 5806 4.373116 TTCGTCCCAGTCAGCGCC 62.373 66.667 2.29 0.00 0.00 6.53
4217 5807 2.811317 CTTCGTCCCAGTCAGCGC 60.811 66.667 0.00 0.00 0.00 5.92
4218 5808 2.811317 GCTTCGTCCCAGTCAGCG 60.811 66.667 0.00 0.00 0.00 5.18
4219 5809 2.435059 GGCTTCGTCCCAGTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
4220 5810 2.125912 CGGCTTCGTCCCAGTCAG 60.126 66.667 0.00 0.00 0.00 3.51
4221 5811 3.691342 CCGGCTTCGTCCCAGTCA 61.691 66.667 0.00 0.00 0.00 3.41
4224 5814 4.821589 GAGCCGGCTTCGTCCCAG 62.822 72.222 33.34 0.00 0.00 4.45
4237 5827 2.047560 ACCTAAACGGTGCGAGCC 60.048 61.111 0.00 0.00 46.80 4.70
4245 5835 1.939838 GCACCAGTGAGACCTAAACGG 60.940 57.143 0.99 0.00 39.35 4.44
4246 5836 1.429463 GCACCAGTGAGACCTAAACG 58.571 55.000 0.99 0.00 0.00 3.60
4247 5837 1.000506 TCGCACCAGTGAGACCTAAAC 59.999 52.381 0.99 0.00 34.53 2.01
4248 5838 1.334160 TCGCACCAGTGAGACCTAAA 58.666 50.000 0.99 0.00 34.53 1.85
4249 5839 3.045518 TCGCACCAGTGAGACCTAA 57.954 52.632 0.99 0.00 34.53 2.69
4250 5840 4.834911 TCGCACCAGTGAGACCTA 57.165 55.556 0.99 0.00 34.53 3.08
4254 5844 2.596338 TCGGTCGCACCAGTGAGA 60.596 61.111 0.99 0.29 38.47 3.27
4255 5845 2.126307 CTCGGTCGCACCAGTGAG 60.126 66.667 0.99 0.00 38.47 3.51
4256 5846 4.357947 GCTCGGTCGCACCAGTGA 62.358 66.667 0.99 0.00 38.47 3.41
4284 5874 4.168291 GAAGAGGGCAGAGCGGGG 62.168 72.222 0.00 0.00 0.00 5.73
4285 5875 4.168291 GGAAGAGGGCAGAGCGGG 62.168 72.222 0.00 0.00 0.00 6.13
4286 5876 2.585791 GAAGGAAGAGGGCAGAGCGG 62.586 65.000 0.00 0.00 0.00 5.52
4287 5877 1.153469 GAAGGAAGAGGGCAGAGCG 60.153 63.158 0.00 0.00 0.00 5.03
4288 5878 0.177836 GAGAAGGAAGAGGGCAGAGC 59.822 60.000 0.00 0.00 0.00 4.09
4289 5879 0.829990 GGAGAAGGAAGAGGGCAGAG 59.170 60.000 0.00 0.00 0.00 3.35
4290 5880 0.415429 AGGAGAAGGAAGAGGGCAGA 59.585 55.000 0.00 0.00 0.00 4.26
4291 5881 0.829990 GAGGAGAAGGAAGAGGGCAG 59.170 60.000 0.00 0.00 0.00 4.85
4292 5882 0.972983 CGAGGAGAAGGAAGAGGGCA 60.973 60.000 0.00 0.00 0.00 5.36
4293 5883 1.819905 CGAGGAGAAGGAAGAGGGC 59.180 63.158 0.00 0.00 0.00 5.19
4294 5884 1.819905 GCGAGGAGAAGGAAGAGGG 59.180 63.158 0.00 0.00 0.00 4.30
4295 5885 1.435515 CGCGAGGAGAAGGAAGAGG 59.564 63.158 0.00 0.00 0.00 3.69
4296 5886 1.226831 GCGCGAGGAGAAGGAAGAG 60.227 63.158 12.10 0.00 0.00 2.85
4297 5887 2.711922 GGCGCGAGGAGAAGGAAGA 61.712 63.158 12.10 0.00 0.00 2.87
4298 5888 2.202810 GGCGCGAGGAGAAGGAAG 60.203 66.667 12.10 0.00 0.00 3.46
4299 5889 3.771160 GGGCGCGAGGAGAAGGAA 61.771 66.667 12.10 0.00 0.00 3.36
4300 5890 4.761058 AGGGCGCGAGGAGAAGGA 62.761 66.667 12.10 0.00 0.00 3.36
4301 5891 4.214327 GAGGGCGCGAGGAGAAGG 62.214 72.222 12.10 0.00 0.00 3.46
4302 5892 4.560856 CGAGGGCGCGAGGAGAAG 62.561 72.222 12.10 0.00 0.00 2.85
4363 5953 4.626081 ATCCATGGCTACGGCGGC 62.626 66.667 13.24 5.58 39.81 6.53
4364 5954 2.357517 GATCCATGGCTACGGCGG 60.358 66.667 13.24 0.00 39.81 6.13
4365 5955 2.693250 TTCGATCCATGGCTACGGCG 62.693 60.000 6.96 4.80 39.81 6.46
4366 5956 1.069090 TTCGATCCATGGCTACGGC 59.931 57.895 6.96 0.00 37.82 5.68
4367 5957 0.389391 AGTTCGATCCATGGCTACGG 59.611 55.000 6.96 0.00 0.00 4.02
4368 5958 1.491670 CAGTTCGATCCATGGCTACG 58.508 55.000 6.96 12.36 0.00 3.51
4369 5959 1.202580 AGCAGTTCGATCCATGGCTAC 60.203 52.381 6.96 0.00 0.00 3.58
4370 5960 1.123077 AGCAGTTCGATCCATGGCTA 58.877 50.000 6.96 0.00 0.00 3.93
4371 5961 0.254178 AAGCAGTTCGATCCATGGCT 59.746 50.000 6.96 0.00 0.00 4.75
4372 5962 1.869767 CTAAGCAGTTCGATCCATGGC 59.130 52.381 6.96 0.00 0.00 4.40
4373 5963 2.487934 CCTAAGCAGTTCGATCCATGG 58.512 52.381 4.97 4.97 0.00 3.66
4374 5964 1.869767 GCCTAAGCAGTTCGATCCATG 59.130 52.381 0.00 0.00 39.53 3.66
4375 5965 1.539065 CGCCTAAGCAGTTCGATCCAT 60.539 52.381 0.00 0.00 39.83 3.41
4376 5966 0.179111 CGCCTAAGCAGTTCGATCCA 60.179 55.000 0.00 0.00 39.83 3.41
4377 5967 1.491505 GCGCCTAAGCAGTTCGATCC 61.492 60.000 0.00 0.00 39.83 3.36
4378 5968 0.528684 AGCGCCTAAGCAGTTCGATC 60.529 55.000 2.29 0.00 39.83 3.69
4379 5969 0.807667 CAGCGCCTAAGCAGTTCGAT 60.808 55.000 2.29 0.00 39.83 3.59
4380 5970 1.446099 CAGCGCCTAAGCAGTTCGA 60.446 57.895 2.29 0.00 39.83 3.71
4381 5971 1.687494 GACAGCGCCTAAGCAGTTCG 61.687 60.000 2.29 0.00 36.99 3.95
4382 5972 0.670546 TGACAGCGCCTAAGCAGTTC 60.671 55.000 2.29 0.00 36.99 3.01
4383 5973 0.951040 GTGACAGCGCCTAAGCAGTT 60.951 55.000 2.29 0.00 36.99 3.16
4384 5974 1.374758 GTGACAGCGCCTAAGCAGT 60.375 57.895 2.29 0.00 39.58 4.40
4385 5975 2.103042 GGTGACAGCGCCTAAGCAG 61.103 63.158 2.29 0.00 41.58 4.24
4386 5976 2.047274 GGTGACAGCGCCTAAGCA 60.047 61.111 2.29 0.00 41.58 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.