Multiple sequence alignment - TraesCS5B01G418300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G418300 chr5B 100.000 2645 0 0 1 2645 594731902 594734546 0.000000e+00 4885
1 TraesCS5B01G418300 chr5B 78.515 754 140 18 20 764 594256295 594257035 2.380000e-130 475
2 TraesCS5B01G418300 chr5B 75.616 406 65 19 869 1264 594476279 594476660 1.260000e-38 171
3 TraesCS5B01G418300 chr5A 89.382 1375 72 36 601 1935 605095884 605097224 0.000000e+00 1663
4 TraesCS5B01G418300 chr5A 90.313 351 31 2 236 586 605095550 605095897 8.630000e-125 457
5 TraesCS5B01G418300 chr5A 80.790 557 95 10 20 573 604940498 604941045 2.430000e-115 425
6 TraesCS5B01G418300 chr5A 80.692 549 92 12 20 564 604906457 604906995 5.270000e-112 414
7 TraesCS5B01G418300 chr5A 96.016 251 10 0 1 251 605094375 605094625 2.450000e-110 409
8 TraesCS5B01G418300 chr5A 82.973 370 29 14 2163 2509 605097302 605097660 1.190000e-78 303
9 TraesCS5B01G418300 chr5A 79.341 455 48 18 814 1264 604908757 604909169 7.210000e-71 278
10 TraesCS5B01G418300 chr5A 78.462 455 52 20 814 1264 604942801 604943213 3.380000e-64 255
11 TraesCS5B01G418300 chr5D 93.598 906 29 11 774 1664 483641002 483641893 0.000000e+00 1325
12 TraesCS5B01G418300 chr5D 82.072 502 39 28 2148 2601 483642221 483642719 5.340000e-102 381
13 TraesCS5B01G418300 chr5D 80.165 242 22 13 1719 1938 483641909 483642146 9.800000e-35 158
14 TraesCS5B01G418300 chrUn 74.813 401 83 16 181 574 67103456 67103845 5.860000e-37 165
15 TraesCS5B01G418300 chrUn 74.813 401 83 16 181 574 465893148 465893537 5.860000e-37 165
16 TraesCS5B01G418300 chrUn 87.000 100 13 0 1034 1133 67101895 67101994 2.150000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G418300 chr5B 594731902 594734546 2644 False 4885.000000 4885 100.000000 1 2645 1 chr5B.!!$F3 2644
1 TraesCS5B01G418300 chr5B 594256295 594257035 740 False 475.000000 475 78.515000 20 764 1 chr5B.!!$F1 744
2 TraesCS5B01G418300 chr5A 605094375 605097660 3285 False 708.000000 1663 89.671000 1 2509 4 chr5A.!!$F3 2508
3 TraesCS5B01G418300 chr5A 604906457 604909169 2712 False 346.000000 414 80.016500 20 1264 2 chr5A.!!$F1 1244
4 TraesCS5B01G418300 chr5A 604940498 604943213 2715 False 340.000000 425 79.626000 20 1264 2 chr5A.!!$F2 1244
5 TraesCS5B01G418300 chr5D 483641002 483642719 1717 False 621.333333 1325 85.278333 774 2601 3 chr5D.!!$F1 1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 1249 0.182775 AGACACCCCGACTTGCTTTT 59.817 50.0 0.0 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 4548 0.038892 CACAATCCAGCACAACAGCC 60.039 55.0 0.0 0.0 34.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.395426 AGTCATCATTGCTTTTCAGTTTGA 57.605 33.333 0.00 0.00 0.00 2.69
101 102 6.630071 ACAATTCCGTAATTTTCCATTCCAG 58.370 36.000 0.00 0.00 32.87 3.86
106 107 5.949354 TCCGTAATTTTCCATTCCAGTTCAT 59.051 36.000 0.00 0.00 0.00 2.57
162 163 2.844122 AACTCACGGAAACAAAGTGC 57.156 45.000 0.00 0.00 35.97 4.40
307 1248 0.535102 CAGACACCCCGACTTGCTTT 60.535 55.000 0.00 0.00 0.00 3.51
308 1249 0.182775 AGACACCCCGACTTGCTTTT 59.817 50.000 0.00 0.00 0.00 2.27
351 1292 5.180271 CCTTGCCGGTGTAAGTTTTAGATA 58.820 41.667 1.90 0.00 32.84 1.98
406 1347 0.532573 GTTGGGCACGATCTCTCAGA 59.467 55.000 0.00 0.00 0.00 3.27
420 1361 3.072944 CTCTCAGAGTCTTTTGCCCAAG 58.927 50.000 0.00 0.00 0.00 3.61
421 1362 2.157738 CTCAGAGTCTTTTGCCCAAGG 58.842 52.381 0.00 0.00 0.00 3.61
425 1366 1.882623 GAGTCTTTTGCCCAAGGAGTG 59.117 52.381 0.00 0.00 0.00 3.51
465 1406 3.609409 GCCACTCATTCCGAACTTTGAAC 60.609 47.826 0.00 0.00 0.00 3.18
576 1518 3.485394 TGGCAGTTTCAGTATCAAGCAA 58.515 40.909 0.00 0.00 0.00 3.91
577 1519 3.503363 TGGCAGTTTCAGTATCAAGCAAG 59.497 43.478 0.00 0.00 0.00 4.01
579 1521 4.216257 GGCAGTTTCAGTATCAAGCAAGAA 59.784 41.667 0.00 0.00 0.00 2.52
580 1522 5.388944 GCAGTTTCAGTATCAAGCAAGAAG 58.611 41.667 0.00 0.00 0.00 2.85
581 1523 5.049129 GCAGTTTCAGTATCAAGCAAGAAGT 60.049 40.000 0.00 0.00 0.00 3.01
582 1524 6.147821 GCAGTTTCAGTATCAAGCAAGAAGTA 59.852 38.462 0.00 0.00 0.00 2.24
583 1525 7.623089 GCAGTTTCAGTATCAAGCAAGAAGTAG 60.623 40.741 0.00 0.00 0.00 2.57
584 1526 7.386299 CAGTTTCAGTATCAAGCAAGAAGTAGT 59.614 37.037 0.00 0.00 0.00 2.73
585 1527 7.934120 AGTTTCAGTATCAAGCAAGAAGTAGTT 59.066 33.333 0.00 0.00 0.00 2.24
586 1528 8.560374 GTTTCAGTATCAAGCAAGAAGTAGTTT 58.440 33.333 0.00 0.00 0.00 2.66
587 1529 7.658179 TCAGTATCAAGCAAGAAGTAGTTTG 57.342 36.000 0.00 0.00 0.00 2.93
588 1530 7.217200 TCAGTATCAAGCAAGAAGTAGTTTGT 58.783 34.615 0.00 0.00 0.00 2.83
589 1531 7.715249 TCAGTATCAAGCAAGAAGTAGTTTGTT 59.285 33.333 0.00 0.00 0.00 2.83
590 1532 8.345565 CAGTATCAAGCAAGAAGTAGTTTGTTT 58.654 33.333 0.00 0.00 0.00 2.83
591 1533 8.903820 AGTATCAAGCAAGAAGTAGTTTGTTTT 58.096 29.630 0.00 0.00 0.00 2.43
592 1534 9.516314 GTATCAAGCAAGAAGTAGTTTGTTTTT 57.484 29.630 0.00 0.00 0.00 1.94
593 1535 7.810766 TCAAGCAAGAAGTAGTTTGTTTTTG 57.189 32.000 0.00 0.00 0.00 2.44
594 1536 7.598278 TCAAGCAAGAAGTAGTTTGTTTTTGA 58.402 30.769 0.00 0.00 0.00 2.69
595 1537 7.754924 TCAAGCAAGAAGTAGTTTGTTTTTGAG 59.245 33.333 0.00 0.00 0.00 3.02
596 1538 7.391148 AGCAAGAAGTAGTTTGTTTTTGAGA 57.609 32.000 0.00 0.00 0.00 3.27
597 1539 7.826690 AGCAAGAAGTAGTTTGTTTTTGAGAA 58.173 30.769 0.00 0.00 0.00 2.87
598 1540 7.970614 AGCAAGAAGTAGTTTGTTTTTGAGAAG 59.029 33.333 0.00 0.00 0.00 2.85
599 1541 7.968405 GCAAGAAGTAGTTTGTTTTTGAGAAGA 59.032 33.333 0.00 0.00 0.00 2.87
600 1542 9.840427 CAAGAAGTAGTTTGTTTTTGAGAAGAA 57.160 29.630 0.00 0.00 0.00 2.52
606 1548 9.841880 GTAGTTTGTTTTTGAGAAGAAAGAAGT 57.158 29.630 0.00 0.00 0.00 3.01
609 1551 9.841880 GTTTGTTTTTGAGAAGAAAGAAGTAGT 57.158 29.630 0.00 0.00 0.00 2.73
651 1631 1.701545 GACGGGTGTGTGTGTGTGTG 61.702 60.000 0.00 0.00 0.00 3.82
656 1636 3.670625 GGGTGTGTGTGTGTGTGTATAT 58.329 45.455 0.00 0.00 0.00 0.86
657 1637 4.618693 CGGGTGTGTGTGTGTGTGTATATA 60.619 45.833 0.00 0.00 0.00 0.86
660 1640 5.805486 GGTGTGTGTGTGTGTGTATATAGAG 59.195 44.000 0.00 0.00 0.00 2.43
672 1652 7.126573 TGTGTGTATATAGAGTGGGGATGAAAA 59.873 37.037 0.00 0.00 0.00 2.29
786 3215 0.790207 CACACTGATTCCGACCGTTG 59.210 55.000 0.00 0.00 0.00 4.10
895 3435 1.161563 TCAAAACCTCCCACGCGAAC 61.162 55.000 15.93 0.00 0.00 3.95
966 3511 1.139947 CTCGCCGGAGAAGAAGGAC 59.860 63.158 9.83 0.00 43.27 3.85
984 3529 2.591715 CCATCCCGTCCAATCCGC 60.592 66.667 0.00 0.00 0.00 5.54
1252 3808 2.440430 TCCTCTTCCTCTCCGCCG 60.440 66.667 0.00 0.00 0.00 6.46
1595 4163 2.881352 CGTCTTCGCCCTCTTCGC 60.881 66.667 0.00 0.00 0.00 4.70
1650 4218 2.187946 CTCTGCAACTAGGCCGGG 59.812 66.667 2.18 0.00 0.00 5.73
1680 4248 1.373748 ATGGTCCGTTCCGTGTTCG 60.374 57.895 0.00 0.00 0.00 3.95
1689 4257 0.748450 TTCCGTGTTCGTCAGGACTT 59.252 50.000 0.00 0.00 34.28 3.01
1715 4283 1.534595 GCTGGATCGATTCATGAAGCC 59.465 52.381 17.58 5.30 0.00 4.35
1778 4350 8.181573 GCGAATTTTGATGTCTGTAATAAGGAA 58.818 33.333 0.00 0.00 0.00 3.36
1784 4356 8.934023 TTGATGTCTGTAATAAGGAAAAGGTT 57.066 30.769 0.00 0.00 0.00 3.50
1785 4357 8.335532 TGATGTCTGTAATAAGGAAAAGGTTG 57.664 34.615 0.00 0.00 0.00 3.77
1786 4358 7.942341 TGATGTCTGTAATAAGGAAAAGGTTGT 59.058 33.333 0.00 0.00 0.00 3.32
1787 4359 7.739498 TGTCTGTAATAAGGAAAAGGTTGTC 57.261 36.000 0.00 0.00 0.00 3.18
1788 4360 7.284074 TGTCTGTAATAAGGAAAAGGTTGTCA 58.716 34.615 0.00 0.00 0.00 3.58
1789 4361 7.942341 TGTCTGTAATAAGGAAAAGGTTGTCAT 59.058 33.333 0.00 0.00 0.00 3.06
1790 4362 8.237267 GTCTGTAATAAGGAAAAGGTTGTCATG 58.763 37.037 0.00 0.00 0.00 3.07
1793 4365 1.981256 AGGAAAAGGTTGTCATGCGT 58.019 45.000 0.00 0.00 0.00 5.24
1795 4367 2.293399 AGGAAAAGGTTGTCATGCGTTC 59.707 45.455 0.00 0.00 0.00 3.95
1796 4368 2.307049 GAAAAGGTTGTCATGCGTTCG 58.693 47.619 0.00 0.00 0.00 3.95
1797 4369 1.588674 AAAGGTTGTCATGCGTTCGA 58.411 45.000 0.00 0.00 0.00 3.71
1801 4373 2.552315 AGGTTGTCATGCGTTCGATTTT 59.448 40.909 0.00 0.00 0.00 1.82
1805 4377 3.550561 TGTCATGCGTTCGATTTTGTTC 58.449 40.909 0.00 0.00 0.00 3.18
1806 4378 3.249799 TGTCATGCGTTCGATTTTGTTCT 59.750 39.130 0.00 0.00 0.00 3.01
1809 4381 2.980586 TGCGTTCGATTTTGTTCTGTG 58.019 42.857 0.00 0.00 0.00 3.66
1810 4382 2.286713 TGCGTTCGATTTTGTTCTGTGG 60.287 45.455 0.00 0.00 0.00 4.17
1811 4383 2.286772 GCGTTCGATTTTGTTCTGTGGT 60.287 45.455 0.00 0.00 0.00 4.16
1812 4384 3.541711 CGTTCGATTTTGTTCTGTGGTC 58.458 45.455 0.00 0.00 0.00 4.02
1813 4385 3.606153 CGTTCGATTTTGTTCTGTGGTCC 60.606 47.826 0.00 0.00 0.00 4.46
1815 4387 4.610605 TCGATTTTGTTCTGTGGTCCTA 57.389 40.909 0.00 0.00 0.00 2.94
1816 4388 4.312443 TCGATTTTGTTCTGTGGTCCTAC 58.688 43.478 0.00 0.00 0.00 3.18
1817 4389 3.435671 CGATTTTGTTCTGTGGTCCTACC 59.564 47.826 0.00 0.00 39.22 3.18
1826 4398 3.786495 TGGTCCTACCAGCTGAGAA 57.214 52.632 17.39 0.00 44.79 2.87
1836 4422 5.123979 CCTACCAGCTGAGAACAAAATTACC 59.876 44.000 17.39 0.00 0.00 2.85
1840 4426 5.006386 CAGCTGAGAACAAAATTACCCTCT 58.994 41.667 8.42 0.00 0.00 3.69
1850 4436 5.770162 ACAAAATTACCCTCTCAAACCTCAG 59.230 40.000 0.00 0.00 0.00 3.35
1851 4437 5.584551 AAATTACCCTCTCAAACCTCAGT 57.415 39.130 0.00 0.00 0.00 3.41
1852 4438 4.559862 ATTACCCTCTCAAACCTCAGTG 57.440 45.455 0.00 0.00 0.00 3.66
1853 4439 1.807814 ACCCTCTCAAACCTCAGTGT 58.192 50.000 0.00 0.00 0.00 3.55
1856 4442 3.714798 ACCCTCTCAAACCTCAGTGTTAA 59.285 43.478 0.00 0.00 0.00 2.01
1857 4443 4.351111 ACCCTCTCAAACCTCAGTGTTAAT 59.649 41.667 0.00 0.00 0.00 1.40
1900 4492 7.998964 GTCAATCCCCTAAATTTGATCCTCTTA 59.001 37.037 0.00 0.00 31.39 2.10
1901 4493 7.998964 TCAATCCCCTAAATTTGATCCTCTTAC 59.001 37.037 0.00 0.00 0.00 2.34
1902 4494 6.901615 TCCCCTAAATTTGATCCTCTTACA 57.098 37.500 0.00 0.00 0.00 2.41
1903 4495 7.465900 TCCCCTAAATTTGATCCTCTTACAT 57.534 36.000 0.00 0.00 0.00 2.29
1904 4496 7.518188 TCCCCTAAATTTGATCCTCTTACATC 58.482 38.462 0.00 0.00 0.00 3.06
1905 4497 6.717084 CCCCTAAATTTGATCCTCTTACATCC 59.283 42.308 0.00 0.00 0.00 3.51
1906 4498 7.421853 CCCCTAAATTTGATCCTCTTACATCCT 60.422 40.741 0.00 0.00 0.00 3.24
1907 4499 8.001292 CCCTAAATTTGATCCTCTTACATCCTT 58.999 37.037 0.00 0.00 0.00 3.36
1908 4500 8.844244 CCTAAATTTGATCCTCTTACATCCTTG 58.156 37.037 0.00 0.00 0.00 3.61
1909 4501 9.401058 CTAAATTTGATCCTCTTACATCCTTGT 57.599 33.333 0.00 0.00 39.98 3.16
1910 4502 7.636150 AATTTGATCCTCTTACATCCTTGTG 57.364 36.000 0.00 0.00 36.53 3.33
1911 4503 4.142609 TGATCCTCTTACATCCTTGTGC 57.857 45.455 0.00 0.00 36.53 4.57
1912 4504 3.519107 TGATCCTCTTACATCCTTGTGCA 59.481 43.478 0.00 0.00 36.53 4.57
1913 4505 3.616956 TCCTCTTACATCCTTGTGCAG 57.383 47.619 0.00 0.00 36.53 4.41
1914 4506 2.237143 TCCTCTTACATCCTTGTGCAGG 59.763 50.000 0.00 0.00 45.64 4.85
1925 4517 3.928727 CTTGTGCAGGATTGTGATTGT 57.071 42.857 0.00 0.00 0.00 2.71
1926 4518 4.247267 CTTGTGCAGGATTGTGATTGTT 57.753 40.909 0.00 0.00 0.00 2.83
1927 4519 3.921119 TGTGCAGGATTGTGATTGTTC 57.079 42.857 0.00 0.00 0.00 3.18
1928 4520 3.220940 TGTGCAGGATTGTGATTGTTCA 58.779 40.909 0.00 0.00 0.00 3.18
1929 4521 3.253921 TGTGCAGGATTGTGATTGTTCAG 59.746 43.478 0.00 0.00 30.85 3.02
1930 4522 3.254166 GTGCAGGATTGTGATTGTTCAGT 59.746 43.478 0.00 0.00 30.85 3.41
1931 4523 3.253921 TGCAGGATTGTGATTGTTCAGTG 59.746 43.478 0.00 0.00 30.85 3.66
1932 4524 3.503363 GCAGGATTGTGATTGTTCAGTGA 59.497 43.478 0.00 0.00 30.85 3.41
1933 4525 4.157289 GCAGGATTGTGATTGTTCAGTGAT 59.843 41.667 0.00 0.00 30.85 3.06
1934 4526 5.637809 CAGGATTGTGATTGTTCAGTGATG 58.362 41.667 0.00 0.00 30.85 3.07
1935 4527 5.182570 CAGGATTGTGATTGTTCAGTGATGT 59.817 40.000 0.00 0.00 30.85 3.06
1936 4528 5.771666 AGGATTGTGATTGTTCAGTGATGTT 59.228 36.000 0.00 0.00 30.85 2.71
1937 4529 6.266103 AGGATTGTGATTGTTCAGTGATGTTT 59.734 34.615 0.00 0.00 30.85 2.83
1938 4530 6.364165 GGATTGTGATTGTTCAGTGATGTTTG 59.636 38.462 0.00 0.00 30.85 2.93
1939 4531 6.448207 TTGTGATTGTTCAGTGATGTTTGA 57.552 33.333 0.00 0.00 30.85 2.69
1940 4532 6.638096 TGTGATTGTTCAGTGATGTTTGAT 57.362 33.333 0.00 0.00 30.85 2.57
1941 4533 6.671190 TGTGATTGTTCAGTGATGTTTGATC 58.329 36.000 0.00 0.00 30.85 2.92
1942 4534 6.088824 GTGATTGTTCAGTGATGTTTGATCC 58.911 40.000 0.00 0.00 30.85 3.36
1943 4535 6.005823 TGATTGTTCAGTGATGTTTGATCCT 58.994 36.000 0.00 0.00 0.00 3.24
1944 4536 5.947228 TTGTTCAGTGATGTTTGATCCTC 57.053 39.130 0.00 0.00 0.00 3.71
1945 4537 5.233083 TGTTCAGTGATGTTTGATCCTCT 57.767 39.130 0.00 0.00 0.00 3.69
1946 4538 5.624159 TGTTCAGTGATGTTTGATCCTCTT 58.376 37.500 0.00 0.00 0.00 2.85
1947 4539 6.768483 TGTTCAGTGATGTTTGATCCTCTTA 58.232 36.000 0.00 0.00 0.00 2.10
1948 4540 6.650807 TGTTCAGTGATGTTTGATCCTCTTAC 59.349 38.462 0.00 0.00 0.00 2.34
1949 4541 6.358974 TCAGTGATGTTTGATCCTCTTACA 57.641 37.500 0.00 0.00 0.00 2.41
1950 4542 6.950842 TCAGTGATGTTTGATCCTCTTACAT 58.049 36.000 0.00 0.00 32.49 2.29
1951 4543 7.044181 TCAGTGATGTTTGATCCTCTTACATC 58.956 38.462 0.00 0.00 43.25 3.06
1955 4547 8.217131 TGATGTTTGATCCTCTTACATCATTG 57.783 34.615 11.04 0.00 45.89 2.82
1956 4548 7.283807 TGATGTTTGATCCTCTTACATCATTGG 59.716 37.037 11.04 0.00 45.89 3.16
1957 4549 5.887598 TGTTTGATCCTCTTACATCATTGGG 59.112 40.000 0.00 0.00 0.00 4.12
1958 4550 4.090761 TGATCCTCTTACATCATTGGGC 57.909 45.455 0.00 0.00 0.00 5.36
1959 4551 3.718434 TGATCCTCTTACATCATTGGGCT 59.282 43.478 0.00 0.00 0.00 5.19
1960 4552 3.565764 TCCTCTTACATCATTGGGCTG 57.434 47.619 0.00 0.00 0.00 4.85
1961 4553 2.846206 TCCTCTTACATCATTGGGCTGT 59.154 45.455 0.00 0.00 0.00 4.40
1962 4554 3.266772 TCCTCTTACATCATTGGGCTGTT 59.733 43.478 0.00 0.00 0.00 3.16
1963 4555 3.379372 CCTCTTACATCATTGGGCTGTTG 59.621 47.826 0.00 0.00 0.00 3.33
1964 4556 4.012374 CTCTTACATCATTGGGCTGTTGT 58.988 43.478 0.00 0.00 34.39 3.32
1965 4557 3.758023 TCTTACATCATTGGGCTGTTGTG 59.242 43.478 0.66 0.00 32.71 3.33
1966 4558 0.604578 ACATCATTGGGCTGTTGTGC 59.395 50.000 0.00 0.00 30.02 4.57
1967 4559 0.892755 CATCATTGGGCTGTTGTGCT 59.107 50.000 0.00 0.00 0.00 4.40
1968 4560 0.892755 ATCATTGGGCTGTTGTGCTG 59.107 50.000 0.00 0.00 0.00 4.41
1969 4561 1.180456 TCATTGGGCTGTTGTGCTGG 61.180 55.000 0.00 0.00 0.00 4.85
1970 4562 1.153524 ATTGGGCTGTTGTGCTGGA 59.846 52.632 0.00 0.00 0.00 3.86
1971 4563 0.251922 ATTGGGCTGTTGTGCTGGAT 60.252 50.000 0.00 0.00 0.00 3.41
1972 4564 0.469705 TTGGGCTGTTGTGCTGGATT 60.470 50.000 0.00 0.00 0.00 3.01
1973 4565 1.180456 TGGGCTGTTGTGCTGGATTG 61.180 55.000 0.00 0.00 0.00 2.67
1974 4566 1.181098 GGGCTGTTGTGCTGGATTGT 61.181 55.000 0.00 0.00 0.00 2.71
1975 4567 0.038892 GGCTGTTGTGCTGGATTGTG 60.039 55.000 0.00 0.00 0.00 3.33
1976 4568 0.953727 GCTGTTGTGCTGGATTGTGA 59.046 50.000 0.00 0.00 0.00 3.58
1977 4569 1.542915 GCTGTTGTGCTGGATTGTGAT 59.457 47.619 0.00 0.00 0.00 3.06
1978 4570 2.029649 GCTGTTGTGCTGGATTGTGATT 60.030 45.455 0.00 0.00 0.00 2.57
1979 4571 3.571571 CTGTTGTGCTGGATTGTGATTG 58.428 45.455 0.00 0.00 0.00 2.67
1980 4572 2.957680 TGTTGTGCTGGATTGTGATTGT 59.042 40.909 0.00 0.00 0.00 2.71
1981 4573 3.243468 TGTTGTGCTGGATTGTGATTGTG 60.243 43.478 0.00 0.00 0.00 3.33
1982 4574 1.270274 TGTGCTGGATTGTGATTGTGC 59.730 47.619 0.00 0.00 0.00 4.57
1983 4575 1.270274 GTGCTGGATTGTGATTGTGCA 59.730 47.619 0.00 0.00 0.00 4.57
1984 4576 2.094390 GTGCTGGATTGTGATTGTGCAT 60.094 45.455 0.00 0.00 0.00 3.96
1985 4577 2.094442 TGCTGGATTGTGATTGTGCATG 60.094 45.455 0.00 0.00 0.00 4.06
1986 4578 2.164827 GCTGGATTGTGATTGTGCATGA 59.835 45.455 0.00 0.00 0.00 3.07
1987 4579 3.181479 GCTGGATTGTGATTGTGCATGAT 60.181 43.478 0.00 0.00 0.00 2.45
1988 4580 4.037089 GCTGGATTGTGATTGTGCATGATA 59.963 41.667 0.00 0.00 0.00 2.15
1989 4581 5.278808 GCTGGATTGTGATTGTGCATGATAT 60.279 40.000 0.00 0.00 0.00 1.63
1990 4582 6.072342 GCTGGATTGTGATTGTGCATGATATA 60.072 38.462 0.00 0.00 0.00 0.86
1991 4583 7.362660 GCTGGATTGTGATTGTGCATGATATAT 60.363 37.037 0.00 0.00 0.00 0.86
1992 4584 7.822658 TGGATTGTGATTGTGCATGATATATG 58.177 34.615 0.00 0.00 0.00 1.78
1993 4585 7.449086 TGGATTGTGATTGTGCATGATATATGT 59.551 33.333 0.00 0.00 0.00 2.29
1994 4586 8.301720 GGATTGTGATTGTGCATGATATATGTT 58.698 33.333 0.00 0.00 0.00 2.71
1997 4589 8.907222 TGTGATTGTGCATGATATATGTTACT 57.093 30.769 0.00 0.00 0.00 2.24
1998 4590 9.995003 TGTGATTGTGCATGATATATGTTACTA 57.005 29.630 0.00 0.00 0.00 1.82
2000 4592 9.435688 TGATTGTGCATGATATATGTTACTACC 57.564 33.333 0.00 0.00 0.00 3.18
2001 4593 9.658799 GATTGTGCATGATATATGTTACTACCT 57.341 33.333 0.00 0.00 0.00 3.08
2002 4594 9.658799 ATTGTGCATGATATATGTTACTACCTC 57.341 33.333 0.00 0.00 0.00 3.85
2003 4595 8.189119 TGTGCATGATATATGTTACTACCTCA 57.811 34.615 0.00 0.00 0.00 3.86
2004 4596 8.646900 TGTGCATGATATATGTTACTACCTCAA 58.353 33.333 0.00 0.00 0.00 3.02
2005 4597 9.489084 GTGCATGATATATGTTACTACCTCAAA 57.511 33.333 0.00 0.00 0.00 2.69
2016 4608 9.911788 ATGTTACTACCTCAAATTGATCATCTT 57.088 29.630 0.00 0.00 0.00 2.40
2027 4619 9.878667 TCAAATTGATCATCTTATTGCATTGTT 57.121 25.926 0.00 0.00 0.00 2.83
2030 4622 9.745880 AATTGATCATCTTATTGCATTGTTCTC 57.254 29.630 0.00 0.00 0.00 2.87
2034 4628 4.944962 TCTTATTGCATTGTTCTCGTGG 57.055 40.909 0.00 0.00 0.00 4.94
2042 4636 1.808411 TTGTTCTCGTGGAGGATTGC 58.192 50.000 0.00 0.00 0.00 3.56
2061 4655 3.887741 TGCGATTGTTCTGTGATGTTTG 58.112 40.909 0.00 0.00 0.00 2.93
2066 4660 5.848036 CGATTGTTCTGTGATGTTTGTCTTC 59.152 40.000 0.00 0.00 0.00 2.87
2067 4661 5.499139 TTGTTCTGTGATGTTTGTCTTCC 57.501 39.130 0.00 0.00 0.00 3.46
2079 4673 7.665145 TGATGTTTGTCTTCCACATATCAGAAA 59.335 33.333 0.00 0.00 33.90 2.52
2082 4676 9.513906 TGTTTGTCTTCCACATATCAGAAATTA 57.486 29.630 0.00 0.00 33.90 1.40
2090 4684 8.365399 TCCACATATCAGAAATTAAGTTAGCG 57.635 34.615 0.00 0.00 0.00 4.26
2091 4685 8.201464 TCCACATATCAGAAATTAAGTTAGCGA 58.799 33.333 0.00 0.00 0.00 4.93
2093 4687 9.249457 CACATATCAGAAATTAAGTTAGCGAGA 57.751 33.333 0.00 0.00 0.00 4.04
2107 4717 0.663153 GCGAGATAACATTGGCACCC 59.337 55.000 0.00 0.00 0.00 4.61
2127 4737 4.720773 ACCCCAATTTGCCATGATATCAAA 59.279 37.500 9.99 0.00 34.68 2.69
2128 4738 5.370289 ACCCCAATTTGCCATGATATCAAAT 59.630 36.000 9.99 1.60 40.80 2.32
2129 4739 5.935789 CCCCAATTTGCCATGATATCAAATC 59.064 40.000 9.99 2.27 38.88 2.17
2130 4740 6.464607 CCCCAATTTGCCATGATATCAAATCA 60.465 38.462 9.99 4.90 38.88 2.57
2131 4741 6.993308 CCCAATTTGCCATGATATCAAATCAA 59.007 34.615 9.99 10.49 38.88 2.57
2132 4742 7.172532 CCCAATTTGCCATGATATCAAATCAAG 59.827 37.037 9.99 3.15 38.88 3.02
2133 4743 7.307751 CCAATTTGCCATGATATCAAATCAAGC 60.308 37.037 9.99 7.18 38.88 4.01
2134 4744 4.859304 TGCCATGATATCAAATCAAGCC 57.141 40.909 9.99 0.00 33.25 4.35
2135 4745 4.216708 TGCCATGATATCAAATCAAGCCA 58.783 39.130 9.99 0.00 33.25 4.75
2136 4746 4.836175 TGCCATGATATCAAATCAAGCCAT 59.164 37.500 9.99 0.00 33.25 4.40
2137 4747 5.047590 TGCCATGATATCAAATCAAGCCATC 60.048 40.000 9.99 0.00 33.25 3.51
2138 4748 5.185249 GCCATGATATCAAATCAAGCCATCT 59.815 40.000 9.99 0.00 0.00 2.90
2139 4749 6.621613 CCATGATATCAAATCAAGCCATCTG 58.378 40.000 9.99 0.00 0.00 2.90
2140 4750 6.208797 CCATGATATCAAATCAAGCCATCTGT 59.791 38.462 9.99 0.00 0.00 3.41
2141 4751 7.255836 CCATGATATCAAATCAAGCCATCTGTT 60.256 37.037 9.99 0.00 0.00 3.16
2142 4752 8.789762 CATGATATCAAATCAAGCCATCTGTTA 58.210 33.333 9.99 0.00 0.00 2.41
2143 4753 8.158169 TGATATCAAATCAAGCCATCTGTTAC 57.842 34.615 1.98 0.00 0.00 2.50
2144 4754 7.994911 TGATATCAAATCAAGCCATCTGTTACT 59.005 33.333 1.98 0.00 0.00 2.24
2145 4755 5.885230 TCAAATCAAGCCATCTGTTACTG 57.115 39.130 0.00 0.00 0.00 2.74
2146 4756 4.701651 TCAAATCAAGCCATCTGTTACTGG 59.298 41.667 0.00 0.00 35.53 4.00
2147 4757 2.787473 TCAAGCCATCTGTTACTGGG 57.213 50.000 0.00 0.00 32.90 4.45
2148 4758 2.265367 TCAAGCCATCTGTTACTGGGA 58.735 47.619 0.00 0.00 32.90 4.37
2149 4759 2.846206 TCAAGCCATCTGTTACTGGGAT 59.154 45.455 0.00 0.00 32.90 3.85
2150 4760 4.037222 TCAAGCCATCTGTTACTGGGATA 58.963 43.478 0.00 0.00 32.90 2.59
2151 4761 4.130118 CAAGCCATCTGTTACTGGGATAC 58.870 47.826 0.00 0.00 32.90 2.24
2152 4762 3.384168 AGCCATCTGTTACTGGGATACA 58.616 45.455 0.00 0.00 39.74 2.29
2153 4763 3.780294 AGCCATCTGTTACTGGGATACAA 59.220 43.478 0.00 0.00 39.74 2.41
2161 4771 6.657541 TCTGTTACTGGGATACAATTTGGAAC 59.342 38.462 0.78 0.00 39.74 3.62
2173 4783 2.943449 TTTGGAACGTTGTGGGAAAC 57.057 45.000 5.00 0.00 0.00 2.78
2181 4791 1.260561 CGTTGTGGGAAACGTTCAGAG 59.739 52.381 0.00 0.00 46.02 3.35
2198 4808 6.422701 CGTTCAGAGTAAATTACCAAGTGTCA 59.577 38.462 0.00 0.00 0.00 3.58
2213 4826 3.759581 AGTGTCAGAGTTGGATGCATTT 58.240 40.909 0.00 0.00 0.00 2.32
2224 4837 5.046159 AGTTGGATGCATTTTGGAACATCAT 60.046 36.000 0.00 0.00 40.53 2.45
2231 4844 4.322953 GCATTTTGGAACATCATGGAAGGT 60.323 41.667 0.00 0.00 39.30 3.50
2232 4845 5.105392 GCATTTTGGAACATCATGGAAGGTA 60.105 40.000 0.00 0.00 39.30 3.08
2233 4846 5.975693 TTTTGGAACATCATGGAAGGTAC 57.024 39.130 0.00 0.00 39.30 3.34
2234 4847 3.260475 TGGAACATCATGGAAGGTACG 57.740 47.619 0.00 0.00 0.00 3.67
2235 4848 2.093181 TGGAACATCATGGAAGGTACGG 60.093 50.000 0.00 0.00 0.00 4.02
2236 4849 2.093128 GGAACATCATGGAAGGTACGGT 60.093 50.000 0.00 0.00 0.00 4.83
2238 4851 2.184533 ACATCATGGAAGGTACGGTGA 58.815 47.619 0.00 0.00 0.00 4.02
2241 4854 1.553248 TCATGGAAGGTACGGTGAAGG 59.447 52.381 0.00 0.00 0.00 3.46
2245 4874 1.622312 GGAAGGTACGGTGAAGGAAGT 59.378 52.381 0.00 0.00 0.00 3.01
2247 4876 3.259123 GGAAGGTACGGTGAAGGAAGTTA 59.741 47.826 0.00 0.00 0.00 2.24
2250 4879 4.891260 AGGTACGGTGAAGGAAGTTAAAG 58.109 43.478 0.00 0.00 0.00 1.85
2258 4891 5.995897 GGTGAAGGAAGTTAAAGCAGTCTTA 59.004 40.000 0.00 0.00 31.02 2.10
2283 4920 6.246163 AGGAAACCAGGTGTATTTTAGAAGG 58.754 40.000 0.00 0.00 0.00 3.46
2286 4923 6.402981 AACCAGGTGTATTTTAGAAGGGAT 57.597 37.500 0.00 0.00 0.00 3.85
2332 4971 6.673978 TCCTGAATCTATTCTCCTCCTTTTGA 59.326 38.462 4.45 0.00 37.67 2.69
2422 5061 4.751767 AGGAAATTGCAAACCAAGACAA 57.248 36.364 18.22 0.00 36.76 3.18
2423 5062 4.696455 AGGAAATTGCAAACCAAGACAAG 58.304 39.130 18.22 0.00 36.76 3.16
2428 5067 4.370364 TTGCAAACCAAGACAAGTCTTC 57.630 40.909 12.27 1.97 46.13 2.87
2461 5124 2.352617 GCTGATTGCAATCGGAAACCAA 60.353 45.455 40.02 18.84 43.06 3.67
2462 5125 3.860378 GCTGATTGCAATCGGAAACCAAA 60.860 43.478 40.02 18.22 43.06 3.28
2464 5127 3.068732 TGATTGCAATCGGAAACCAAACA 59.931 39.130 29.23 9.49 38.26 2.83
2467 5130 2.166459 TGCAATCGGAAACCAAACAACA 59.834 40.909 0.00 0.00 0.00 3.33
2468 5131 3.181471 TGCAATCGGAAACCAAACAACAT 60.181 39.130 0.00 0.00 0.00 2.71
2478 5141 7.158021 GGAAACCAAACAACATCATGGATTTA 58.842 34.615 0.00 0.00 36.75 1.40
2485 5148 9.859427 CAAACAACATCATGGATTTACACTTAT 57.141 29.630 0.00 0.00 0.00 1.73
2559 5222 3.843999 TGAGAGTTGTGTTGGTTTTTGC 58.156 40.909 0.00 0.00 0.00 3.68
2579 5242 1.278985 CTTGTGCATGTACCAGAGGGA 59.721 52.381 11.66 0.00 38.05 4.20
2590 5253 7.614494 CATGTACCAGAGGGAAAAATCAAAAT 58.386 34.615 0.00 0.00 38.05 1.82
2601 5264 8.323567 AGGGAAAAATCAAAATATGTGCAATCT 58.676 29.630 0.00 0.00 0.00 2.40
2602 5265 8.606602 GGGAAAAATCAAAATATGTGCAATCTC 58.393 33.333 0.00 0.00 0.00 2.75
2603 5266 8.606602 GGAAAAATCAAAATATGTGCAATCTCC 58.393 33.333 0.00 0.00 0.00 3.71
2604 5267 9.153721 GAAAAATCAAAATATGTGCAATCTCCA 57.846 29.630 0.00 0.00 0.00 3.86
2605 5268 9.675464 AAAAATCAAAATATGTGCAATCTCCAT 57.325 25.926 0.00 0.00 0.00 3.41
2607 5270 9.754382 AAATCAAAATATGTGCAATCTCCATAC 57.246 29.630 0.00 0.00 0.00 2.39
2608 5271 7.878547 TCAAAATATGTGCAATCTCCATACA 57.121 32.000 0.00 0.00 0.00 2.29
2609 5272 8.291191 TCAAAATATGTGCAATCTCCATACAA 57.709 30.769 0.00 0.00 0.00 2.41
2610 5273 8.916062 TCAAAATATGTGCAATCTCCATACAAT 58.084 29.630 0.00 0.00 0.00 2.71
2611 5274 9.537192 CAAAATATGTGCAATCTCCATACAATT 57.463 29.630 0.00 0.00 0.00 2.32
2614 5277 6.639632 ATGTGCAATCTCCATACAATTACC 57.360 37.500 0.00 0.00 0.00 2.85
2615 5278 5.504853 TGTGCAATCTCCATACAATTACCA 58.495 37.500 0.00 0.00 0.00 3.25
2616 5279 6.128486 TGTGCAATCTCCATACAATTACCAT 58.872 36.000 0.00 0.00 0.00 3.55
2617 5280 7.286313 TGTGCAATCTCCATACAATTACCATA 58.714 34.615 0.00 0.00 0.00 2.74
2618 5281 7.777440 TGTGCAATCTCCATACAATTACCATAA 59.223 33.333 0.00 0.00 0.00 1.90
2619 5282 8.629158 GTGCAATCTCCATACAATTACCATAAA 58.371 33.333 0.00 0.00 0.00 1.40
2620 5283 8.849168 TGCAATCTCCATACAATTACCATAAAG 58.151 33.333 0.00 0.00 0.00 1.85
2621 5284 9.066892 GCAATCTCCATACAATTACCATAAAGA 57.933 33.333 0.00 0.00 0.00 2.52
2638 5301 9.905713 ACCATAAAGATATCAGTTTTGCTAGAA 57.094 29.630 5.32 0.00 0.00 2.10
2643 5306 9.678260 AAAGATATCAGTTTTGCTAGAACTCAT 57.322 29.630 5.32 0.00 35.26 2.90
2644 5307 8.885494 AGATATCAGTTTTGCTAGAACTCATC 57.115 34.615 5.32 0.00 35.26 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.986659 ACTTGCATGATCAAACTGAAAAGC 59.013 37.500 6.60 0.00 0.00 3.51
58 59 8.938906 GGAATTGTAAATTGAAACTTGCATGAT 58.061 29.630 6.60 0.00 0.00 2.45
162 163 2.638330 ATCACATTACGGGGTCGGCG 62.638 60.000 0.00 0.00 41.39 6.46
200 201 2.284754 TGCAGTTTGGAGTATGGCAA 57.715 45.000 0.00 0.00 0.00 4.52
324 1265 1.378514 CTTACACCGGCAAGGGCAT 60.379 57.895 0.00 0.00 46.96 4.40
351 1292 2.683211 AGCTTCCTTTGAACCATGGT 57.317 45.000 13.00 13.00 0.00 3.55
388 1329 0.820226 CTCTGAGAGATCGTGCCCAA 59.180 55.000 2.60 0.00 0.00 4.12
406 1347 1.494721 TCACTCCTTGGGCAAAAGACT 59.505 47.619 1.09 0.00 0.00 3.24
420 1361 2.946990 TCGGAAAAACACCTTTCACTCC 59.053 45.455 0.00 0.00 37.09 3.85
421 1362 4.537015 CATCGGAAAAACACCTTTCACTC 58.463 43.478 0.00 0.00 37.09 3.51
425 1366 2.035321 TGGCATCGGAAAAACACCTTTC 59.965 45.455 0.00 0.00 35.04 2.62
580 1522 9.841880 ACTTCTTTCTTCTCAAAAACAAACTAC 57.158 29.630 0.00 0.00 0.00 2.73
583 1525 9.841880 ACTACTTCTTTCTTCTCAAAAACAAAC 57.158 29.630 0.00 0.00 0.00 2.93
586 1528 9.840427 CAAACTACTTCTTTCTTCTCAAAAACA 57.160 29.630 0.00 0.00 0.00 2.83
587 1529 9.841880 ACAAACTACTTCTTTCTTCTCAAAAAC 57.158 29.630 0.00 0.00 0.00 2.43
589 1531 9.840427 CAACAAACTACTTCTTTCTTCTCAAAA 57.160 29.630 0.00 0.00 0.00 2.44
590 1532 8.458843 CCAACAAACTACTTCTTTCTTCTCAAA 58.541 33.333 0.00 0.00 0.00 2.69
591 1533 7.610305 ACCAACAAACTACTTCTTTCTTCTCAA 59.390 33.333 0.00 0.00 0.00 3.02
592 1534 7.110155 ACCAACAAACTACTTCTTTCTTCTCA 58.890 34.615 0.00 0.00 0.00 3.27
593 1535 7.555306 ACCAACAAACTACTTCTTTCTTCTC 57.445 36.000 0.00 0.00 0.00 2.87
594 1536 7.715686 CCTACCAACAAACTACTTCTTTCTTCT 59.284 37.037 0.00 0.00 0.00 2.85
595 1537 7.520131 GCCTACCAACAAACTACTTCTTTCTTC 60.520 40.741 0.00 0.00 0.00 2.87
596 1538 6.262496 GCCTACCAACAAACTACTTCTTTCTT 59.738 38.462 0.00 0.00 0.00 2.52
597 1539 5.763698 GCCTACCAACAAACTACTTCTTTCT 59.236 40.000 0.00 0.00 0.00 2.52
598 1540 5.763698 AGCCTACCAACAAACTACTTCTTTC 59.236 40.000 0.00 0.00 0.00 2.62
599 1541 5.531287 CAGCCTACCAACAAACTACTTCTTT 59.469 40.000 0.00 0.00 0.00 2.52
600 1542 5.063880 CAGCCTACCAACAAACTACTTCTT 58.936 41.667 0.00 0.00 0.00 2.52
601 1543 4.347000 TCAGCCTACCAACAAACTACTTCT 59.653 41.667 0.00 0.00 0.00 2.85
602 1544 4.638304 TCAGCCTACCAACAAACTACTTC 58.362 43.478 0.00 0.00 0.00 3.01
603 1545 4.642429 CTCAGCCTACCAACAAACTACTT 58.358 43.478 0.00 0.00 0.00 2.24
604 1546 3.557264 GCTCAGCCTACCAACAAACTACT 60.557 47.826 0.00 0.00 0.00 2.57
605 1547 2.742589 GCTCAGCCTACCAACAAACTAC 59.257 50.000 0.00 0.00 0.00 2.73
606 1548 2.611971 CGCTCAGCCTACCAACAAACTA 60.612 50.000 0.00 0.00 0.00 2.24
607 1549 1.878102 CGCTCAGCCTACCAACAAACT 60.878 52.381 0.00 0.00 0.00 2.66
608 1550 0.517316 CGCTCAGCCTACCAACAAAC 59.483 55.000 0.00 0.00 0.00 2.93
609 1551 0.394938 TCGCTCAGCCTACCAACAAA 59.605 50.000 0.00 0.00 0.00 2.83
610 1552 0.320421 GTCGCTCAGCCTACCAACAA 60.320 55.000 0.00 0.00 0.00 2.83
651 1631 6.655425 GGCTTTTTCATCCCCACTCTATATAC 59.345 42.308 0.00 0.00 0.00 1.47
656 1636 2.355716 CGGCTTTTTCATCCCCACTCTA 60.356 50.000 0.00 0.00 0.00 2.43
657 1637 1.614317 CGGCTTTTTCATCCCCACTCT 60.614 52.381 0.00 0.00 0.00 3.24
660 1640 0.610785 TCCGGCTTTTTCATCCCCAC 60.611 55.000 0.00 0.00 0.00 4.61
966 3511 2.111043 CGGATTGGACGGGATGGG 59.889 66.667 0.00 0.00 0.00 4.00
974 3519 3.499737 CTGGCGTGCGGATTGGAC 61.500 66.667 0.00 0.00 35.21 4.02
1224 3780 0.752376 GGAAGAGGACGAGGACGGAT 60.752 60.000 0.00 0.00 44.46 4.18
1608 4176 0.837691 ACCTGGTGAGCATGAGGACA 60.838 55.000 0.00 0.00 0.00 4.02
1615 4183 1.001641 GCAGGAACCTGGTGAGCAT 60.002 57.895 20.38 0.00 43.77 3.79
1650 4218 1.135083 ACGGACCATGATTCGTGAGAC 60.135 52.381 0.00 0.00 41.84 3.36
1680 4248 0.526524 CCAGCGATCGAAGTCCTGAC 60.527 60.000 21.57 0.00 0.00 3.51
1707 4275 3.369147 CGAACAGAACAGTAGGCTTCATG 59.631 47.826 0.00 0.00 0.00 3.07
1715 4283 2.731976 GCAGGAACGAACAGAACAGTAG 59.268 50.000 0.00 0.00 0.00 2.57
1778 4350 1.588674 TCGAACGCATGACAACCTTT 58.411 45.000 0.00 0.00 0.00 3.11
1782 4354 3.296628 ACAAAATCGAACGCATGACAAC 58.703 40.909 0.00 0.00 0.00 3.32
1784 4356 3.249799 AGAACAAAATCGAACGCATGACA 59.750 39.130 0.00 0.00 0.00 3.58
1785 4357 3.599514 CAGAACAAAATCGAACGCATGAC 59.400 43.478 0.00 0.00 0.00 3.06
1786 4358 3.249799 ACAGAACAAAATCGAACGCATGA 59.750 39.130 0.00 0.00 0.00 3.07
1787 4359 3.358700 CACAGAACAAAATCGAACGCATG 59.641 43.478 0.00 0.00 0.00 4.06
1788 4360 3.554524 CACAGAACAAAATCGAACGCAT 58.445 40.909 0.00 0.00 0.00 4.73
1789 4361 2.286713 CCACAGAACAAAATCGAACGCA 60.287 45.455 0.00 0.00 0.00 5.24
1790 4362 2.286772 ACCACAGAACAAAATCGAACGC 60.287 45.455 0.00 0.00 0.00 4.84
1793 4365 3.815809 AGGACCACAGAACAAAATCGAA 58.184 40.909 0.00 0.00 0.00 3.71
1795 4367 3.435671 GGTAGGACCACAGAACAAAATCG 59.564 47.826 0.00 0.00 38.42 3.34
1796 4368 4.394729 TGGTAGGACCACAGAACAAAATC 58.605 43.478 0.00 0.00 44.79 2.17
1797 4369 4.398319 CTGGTAGGACCACAGAACAAAAT 58.602 43.478 5.23 0.00 44.79 1.82
1801 4373 0.685097 GCTGGTAGGACCACAGAACA 59.315 55.000 13.21 0.00 44.79 3.18
1805 4377 0.534412 CTCAGCTGGTAGGACCACAG 59.466 60.000 15.13 0.07 44.79 3.66
1806 4378 0.114364 TCTCAGCTGGTAGGACCACA 59.886 55.000 15.13 0.00 44.79 4.17
1809 4381 1.267121 TGTTCTCAGCTGGTAGGACC 58.733 55.000 15.13 1.10 39.22 4.46
1810 4382 3.402628 TTTGTTCTCAGCTGGTAGGAC 57.597 47.619 15.13 10.38 0.00 3.85
1811 4383 4.640771 ATTTTGTTCTCAGCTGGTAGGA 57.359 40.909 15.13 4.77 0.00 2.94
1812 4384 5.123979 GGTAATTTTGTTCTCAGCTGGTAGG 59.876 44.000 15.13 2.31 0.00 3.18
1813 4385 5.123979 GGGTAATTTTGTTCTCAGCTGGTAG 59.876 44.000 15.13 4.82 0.00 3.18
1815 4387 3.826729 GGGTAATTTTGTTCTCAGCTGGT 59.173 43.478 15.13 0.00 0.00 4.00
1816 4388 4.082125 AGGGTAATTTTGTTCTCAGCTGG 58.918 43.478 15.13 4.77 0.00 4.85
1817 4389 5.006386 AGAGGGTAATTTTGTTCTCAGCTG 58.994 41.667 7.63 7.63 0.00 4.24
1818 4390 5.221925 TGAGAGGGTAATTTTGTTCTCAGCT 60.222 40.000 7.78 0.00 36.93 4.24
1820 4392 7.363431 GTTTGAGAGGGTAATTTTGTTCTCAG 58.637 38.462 10.37 0.00 41.21 3.35
1822 4394 6.490381 AGGTTTGAGAGGGTAATTTTGTTCTC 59.510 38.462 0.00 0.00 33.44 2.87
1823 4395 6.373759 AGGTTTGAGAGGGTAATTTTGTTCT 58.626 36.000 0.00 0.00 0.00 3.01
1824 4396 6.264518 TGAGGTTTGAGAGGGTAATTTTGTTC 59.735 38.462 0.00 0.00 0.00 3.18
1825 4397 6.133356 TGAGGTTTGAGAGGGTAATTTTGTT 58.867 36.000 0.00 0.00 0.00 2.83
1826 4398 5.701224 TGAGGTTTGAGAGGGTAATTTTGT 58.299 37.500 0.00 0.00 0.00 2.83
1836 4422 5.409826 GTCATTAACACTGAGGTTTGAGAGG 59.590 44.000 0.00 0.00 32.29 3.69
1840 4426 5.042463 TGGTCATTAACACTGAGGTTTGA 57.958 39.130 0.00 0.00 32.29 2.69
1856 4442 8.051535 GGGATTGACATATATCTTCATGGTCAT 58.948 37.037 0.00 0.00 0.00 3.06
1857 4443 7.397221 GGGATTGACATATATCTTCATGGTCA 58.603 38.462 0.00 0.00 0.00 4.02
1876 4468 7.779798 TGTAAGAGGATCAAATTTAGGGGATTG 59.220 37.037 0.00 0.00 37.82 2.67
1905 4497 3.928727 ACAATCACAATCCTGCACAAG 57.071 42.857 0.00 0.00 0.00 3.16
1906 4498 3.635836 TGAACAATCACAATCCTGCACAA 59.364 39.130 0.00 0.00 0.00 3.33
1907 4499 3.220940 TGAACAATCACAATCCTGCACA 58.779 40.909 0.00 0.00 0.00 4.57
1908 4500 3.254166 ACTGAACAATCACAATCCTGCAC 59.746 43.478 0.00 0.00 0.00 4.57
1909 4501 3.253921 CACTGAACAATCACAATCCTGCA 59.746 43.478 0.00 0.00 0.00 4.41
1910 4502 3.503363 TCACTGAACAATCACAATCCTGC 59.497 43.478 0.00 0.00 0.00 4.85
1911 4503 5.182570 ACATCACTGAACAATCACAATCCTG 59.817 40.000 0.00 0.00 0.00 3.86
1912 4504 5.319453 ACATCACTGAACAATCACAATCCT 58.681 37.500 0.00 0.00 0.00 3.24
1913 4505 5.633830 ACATCACTGAACAATCACAATCC 57.366 39.130 0.00 0.00 0.00 3.01
1914 4506 7.140705 TCAAACATCACTGAACAATCACAATC 58.859 34.615 0.00 0.00 0.00 2.67
1915 4507 7.041635 TCAAACATCACTGAACAATCACAAT 57.958 32.000 0.00 0.00 0.00 2.71
1916 4508 6.448207 TCAAACATCACTGAACAATCACAA 57.552 33.333 0.00 0.00 0.00 3.33
1917 4509 6.294120 GGATCAAACATCACTGAACAATCACA 60.294 38.462 0.00 0.00 0.00 3.58
1918 4510 6.072286 AGGATCAAACATCACTGAACAATCAC 60.072 38.462 0.00 0.00 0.00 3.06
1919 4511 6.005823 AGGATCAAACATCACTGAACAATCA 58.994 36.000 0.00 0.00 0.00 2.57
1920 4512 6.373774 AGAGGATCAAACATCACTGAACAATC 59.626 38.462 0.00 0.00 37.82 2.67
1921 4513 6.243900 AGAGGATCAAACATCACTGAACAAT 58.756 36.000 0.00 0.00 37.82 2.71
1922 4514 5.624159 AGAGGATCAAACATCACTGAACAA 58.376 37.500 0.00 0.00 37.82 2.83
1923 4515 5.233083 AGAGGATCAAACATCACTGAACA 57.767 39.130 0.00 0.00 37.82 3.18
1924 4516 6.650807 TGTAAGAGGATCAAACATCACTGAAC 59.349 38.462 0.00 0.00 37.82 3.18
1925 4517 6.768483 TGTAAGAGGATCAAACATCACTGAA 58.232 36.000 0.00 0.00 37.82 3.02
1926 4518 6.358974 TGTAAGAGGATCAAACATCACTGA 57.641 37.500 0.00 0.00 37.82 3.41
1932 4524 6.548622 CCCAATGATGTAAGAGGATCAAACAT 59.451 38.462 0.00 0.00 42.84 2.71
1933 4525 5.887598 CCCAATGATGTAAGAGGATCAAACA 59.112 40.000 0.00 0.00 37.82 2.83
1934 4526 5.221126 GCCCAATGATGTAAGAGGATCAAAC 60.221 44.000 0.00 0.00 37.82 2.93
1935 4527 4.889409 GCCCAATGATGTAAGAGGATCAAA 59.111 41.667 0.00 0.00 37.82 2.69
1936 4528 4.166725 AGCCCAATGATGTAAGAGGATCAA 59.833 41.667 0.00 0.00 37.82 2.57
1937 4529 3.718434 AGCCCAATGATGTAAGAGGATCA 59.282 43.478 0.00 0.00 37.82 2.92
1938 4530 4.070716 CAGCCCAATGATGTAAGAGGATC 58.929 47.826 0.00 0.00 0.00 3.36
1939 4531 3.461085 ACAGCCCAATGATGTAAGAGGAT 59.539 43.478 0.00 0.00 0.00 3.24
1940 4532 2.846206 ACAGCCCAATGATGTAAGAGGA 59.154 45.455 0.00 0.00 0.00 3.71
1941 4533 3.287867 ACAGCCCAATGATGTAAGAGG 57.712 47.619 0.00 0.00 0.00 3.69
1942 4534 4.012374 ACAACAGCCCAATGATGTAAGAG 58.988 43.478 0.00 0.00 34.79 2.85
1943 4535 3.758023 CACAACAGCCCAATGATGTAAGA 59.242 43.478 0.00 0.00 34.36 2.10
1944 4536 3.674138 GCACAACAGCCCAATGATGTAAG 60.674 47.826 0.00 0.00 34.36 2.34
1945 4537 2.230992 GCACAACAGCCCAATGATGTAA 59.769 45.455 0.00 0.00 34.36 2.41
1946 4538 1.818060 GCACAACAGCCCAATGATGTA 59.182 47.619 0.00 0.00 34.36 2.29
1947 4539 0.604578 GCACAACAGCCCAATGATGT 59.395 50.000 0.00 0.00 36.72 3.06
1948 4540 0.892755 AGCACAACAGCCCAATGATG 59.107 50.000 0.00 0.00 34.23 3.07
1949 4541 0.892755 CAGCACAACAGCCCAATGAT 59.107 50.000 0.00 0.00 34.23 2.45
1950 4542 1.180456 CCAGCACAACAGCCCAATGA 61.180 55.000 0.00 0.00 34.23 2.57
1951 4543 1.180456 TCCAGCACAACAGCCCAATG 61.180 55.000 0.00 0.00 34.23 2.82
1952 4544 0.251922 ATCCAGCACAACAGCCCAAT 60.252 50.000 0.00 0.00 34.23 3.16
1953 4545 0.469705 AATCCAGCACAACAGCCCAA 60.470 50.000 0.00 0.00 34.23 4.12
1954 4546 1.153524 AATCCAGCACAACAGCCCA 59.846 52.632 0.00 0.00 34.23 5.36
1955 4547 1.181098 ACAATCCAGCACAACAGCCC 61.181 55.000 0.00 0.00 34.23 5.19
1956 4548 0.038892 CACAATCCAGCACAACAGCC 60.039 55.000 0.00 0.00 34.23 4.85
1957 4549 0.953727 TCACAATCCAGCACAACAGC 59.046 50.000 0.00 0.00 0.00 4.40
1958 4550 3.005050 ACAATCACAATCCAGCACAACAG 59.995 43.478 0.00 0.00 0.00 3.16
1959 4551 2.957680 ACAATCACAATCCAGCACAACA 59.042 40.909 0.00 0.00 0.00 3.33
1960 4552 3.311106 CACAATCACAATCCAGCACAAC 58.689 45.455 0.00 0.00 0.00 3.32
1961 4553 2.288334 GCACAATCACAATCCAGCACAA 60.288 45.455 0.00 0.00 0.00 3.33
1962 4554 1.270274 GCACAATCACAATCCAGCACA 59.730 47.619 0.00 0.00 0.00 4.57
1963 4555 1.270274 TGCACAATCACAATCCAGCAC 59.730 47.619 0.00 0.00 0.00 4.40
1964 4556 1.618487 TGCACAATCACAATCCAGCA 58.382 45.000 0.00 0.00 0.00 4.41
1965 4557 2.164827 TCATGCACAATCACAATCCAGC 59.835 45.455 0.00 0.00 0.00 4.85
1966 4558 4.649088 ATCATGCACAATCACAATCCAG 57.351 40.909 0.00 0.00 0.00 3.86
1967 4559 7.449086 ACATATATCATGCACAATCACAATCCA 59.551 33.333 0.00 0.00 0.00 3.41
1968 4560 7.823665 ACATATATCATGCACAATCACAATCC 58.176 34.615 0.00 0.00 0.00 3.01
1971 4563 9.341078 AGTAACATATATCATGCACAATCACAA 57.659 29.630 0.00 0.00 0.00 3.33
1972 4564 8.907222 AGTAACATATATCATGCACAATCACA 57.093 30.769 0.00 0.00 0.00 3.58
1974 4566 9.435688 GGTAGTAACATATATCATGCACAATCA 57.564 33.333 0.00 0.00 0.00 2.57
1975 4567 9.658799 AGGTAGTAACATATATCATGCACAATC 57.341 33.333 0.00 0.00 0.00 2.67
1976 4568 9.658799 GAGGTAGTAACATATATCATGCACAAT 57.341 33.333 0.00 0.00 0.00 2.71
1977 4569 8.646900 TGAGGTAGTAACATATATCATGCACAA 58.353 33.333 0.00 0.00 0.00 3.33
1978 4570 8.189119 TGAGGTAGTAACATATATCATGCACA 57.811 34.615 0.00 0.00 0.00 4.57
1979 4571 9.489084 TTTGAGGTAGTAACATATATCATGCAC 57.511 33.333 0.00 0.00 0.00 4.57
1990 4582 9.911788 AAGATGATCAATTTGAGGTAGTAACAT 57.088 29.630 0.00 0.00 0.00 2.71
1995 4587 8.844244 GCAATAAGATGATCAATTTGAGGTAGT 58.156 33.333 0.00 0.00 0.00 2.73
1996 4588 8.843262 TGCAATAAGATGATCAATTTGAGGTAG 58.157 33.333 0.00 0.00 0.00 3.18
1997 4589 8.750515 TGCAATAAGATGATCAATTTGAGGTA 57.249 30.769 0.00 0.00 0.00 3.08
1998 4590 7.649533 TGCAATAAGATGATCAATTTGAGGT 57.350 32.000 0.00 0.00 0.00 3.85
1999 4591 8.978539 CAATGCAATAAGATGATCAATTTGAGG 58.021 33.333 0.00 0.00 0.00 3.86
2000 4592 9.529325 ACAATGCAATAAGATGATCAATTTGAG 57.471 29.630 0.00 0.00 0.00 3.02
2001 4593 9.878667 AACAATGCAATAAGATGATCAATTTGA 57.121 25.926 0.00 0.75 0.00 2.69
2004 4596 9.745880 GAGAACAATGCAATAAGATGATCAATT 57.254 29.630 0.00 0.16 0.00 2.32
2005 4597 8.074370 CGAGAACAATGCAATAAGATGATCAAT 58.926 33.333 0.00 0.00 0.00 2.57
2006 4598 7.066163 ACGAGAACAATGCAATAAGATGATCAA 59.934 33.333 0.00 0.00 0.00 2.57
2007 4599 6.539826 ACGAGAACAATGCAATAAGATGATCA 59.460 34.615 0.00 0.00 0.00 2.92
2008 4600 6.849811 CACGAGAACAATGCAATAAGATGATC 59.150 38.462 0.00 0.00 0.00 2.92
2009 4601 6.238566 CCACGAGAACAATGCAATAAGATGAT 60.239 38.462 0.00 0.00 0.00 2.45
2010 4602 5.065090 CCACGAGAACAATGCAATAAGATGA 59.935 40.000 0.00 0.00 0.00 2.92
2011 4603 5.065090 TCCACGAGAACAATGCAATAAGATG 59.935 40.000 0.00 0.00 0.00 2.90
2012 4604 5.185454 TCCACGAGAACAATGCAATAAGAT 58.815 37.500 0.00 0.00 0.00 2.40
2013 4605 4.574892 TCCACGAGAACAATGCAATAAGA 58.425 39.130 0.00 0.00 0.00 2.10
2014 4606 4.201851 CCTCCACGAGAACAATGCAATAAG 60.202 45.833 0.00 0.00 0.00 1.73
2015 4607 3.689161 CCTCCACGAGAACAATGCAATAA 59.311 43.478 0.00 0.00 0.00 1.40
2016 4608 3.055458 TCCTCCACGAGAACAATGCAATA 60.055 43.478 0.00 0.00 0.00 1.90
2017 4609 2.086869 CCTCCACGAGAACAATGCAAT 58.913 47.619 0.00 0.00 0.00 3.56
2018 4610 1.071542 TCCTCCACGAGAACAATGCAA 59.928 47.619 0.00 0.00 0.00 4.08
2019 4611 0.684535 TCCTCCACGAGAACAATGCA 59.315 50.000 0.00 0.00 0.00 3.96
2020 4612 2.029838 ATCCTCCACGAGAACAATGC 57.970 50.000 0.00 0.00 0.00 3.56
2027 4619 0.824109 AATCGCAATCCTCCACGAGA 59.176 50.000 0.00 0.00 38.04 4.04
2030 4622 1.062587 GAACAATCGCAATCCTCCACG 59.937 52.381 0.00 0.00 0.00 4.94
2034 4628 3.002791 TCACAGAACAATCGCAATCCTC 58.997 45.455 0.00 0.00 0.00 3.71
2042 4636 5.348418 AGACAAACATCACAGAACAATCG 57.652 39.130 0.00 0.00 0.00 3.34
2066 4660 8.365399 TCGCTAACTTAATTTCTGATATGTGG 57.635 34.615 0.00 0.00 0.00 4.17
2067 4661 9.249457 TCTCGCTAACTTAATTTCTGATATGTG 57.751 33.333 0.00 0.00 0.00 3.21
2079 4673 6.765989 TGCCAATGTTATCTCGCTAACTTAAT 59.234 34.615 0.00 0.00 33.62 1.40
2082 4676 4.332819 GTGCCAATGTTATCTCGCTAACTT 59.667 41.667 0.00 0.00 33.62 2.66
2090 4684 2.435372 TGGGGTGCCAATGTTATCTC 57.565 50.000 0.00 0.00 0.00 2.75
2091 4685 2.917713 TTGGGGTGCCAATGTTATCT 57.082 45.000 0.00 0.00 0.00 1.98
2093 4687 3.621958 GCAAATTGGGGTGCCAATGTTAT 60.622 43.478 0.00 0.00 39.90 1.89
2107 4717 7.307751 GCTTGATTTGATATCATGGCAAATTGG 60.308 37.037 6.17 1.64 40.98 3.16
2127 4737 2.846206 TCCCAGTAACAGATGGCTTGAT 59.154 45.455 0.00 0.00 35.10 2.57
2128 4738 2.265367 TCCCAGTAACAGATGGCTTGA 58.735 47.619 0.00 0.00 35.10 3.02
2129 4739 2.787473 TCCCAGTAACAGATGGCTTG 57.213 50.000 0.00 0.00 35.10 4.01
2130 4740 3.780294 TGTATCCCAGTAACAGATGGCTT 59.220 43.478 0.00 0.00 35.10 4.35
2131 4741 3.384168 TGTATCCCAGTAACAGATGGCT 58.616 45.455 0.00 0.00 35.10 4.75
2132 4742 3.838244 TGTATCCCAGTAACAGATGGC 57.162 47.619 0.00 0.00 35.10 4.40
2133 4743 6.039717 CCAAATTGTATCCCAGTAACAGATGG 59.960 42.308 0.00 0.00 36.27 3.51
2134 4744 6.828273 TCCAAATTGTATCCCAGTAACAGATG 59.172 38.462 0.00 0.00 0.00 2.90
2135 4745 6.969043 TCCAAATTGTATCCCAGTAACAGAT 58.031 36.000 0.00 0.00 0.00 2.90
2136 4746 6.381498 TCCAAATTGTATCCCAGTAACAGA 57.619 37.500 0.00 0.00 0.00 3.41
2137 4747 6.403200 CGTTCCAAATTGTATCCCAGTAACAG 60.403 42.308 0.00 0.00 0.00 3.16
2138 4748 5.413213 CGTTCCAAATTGTATCCCAGTAACA 59.587 40.000 0.00 0.00 0.00 2.41
2139 4749 5.413523 ACGTTCCAAATTGTATCCCAGTAAC 59.586 40.000 0.00 0.00 0.00 2.50
2140 4750 5.562635 ACGTTCCAAATTGTATCCCAGTAA 58.437 37.500 0.00 0.00 0.00 2.24
2141 4751 5.168647 ACGTTCCAAATTGTATCCCAGTA 57.831 39.130 0.00 0.00 0.00 2.74
2142 4752 4.028993 ACGTTCCAAATTGTATCCCAGT 57.971 40.909 0.00 0.00 0.00 4.00
2143 4753 4.217550 ACAACGTTCCAAATTGTATCCCAG 59.782 41.667 0.00 0.00 34.84 4.45
2144 4754 4.022762 CACAACGTTCCAAATTGTATCCCA 60.023 41.667 0.00 0.00 34.84 4.37
2145 4755 4.481463 CACAACGTTCCAAATTGTATCCC 58.519 43.478 0.00 0.00 34.84 3.85
2146 4756 4.481463 CCACAACGTTCCAAATTGTATCC 58.519 43.478 0.00 0.00 34.84 2.59
2147 4757 4.216687 TCCCACAACGTTCCAAATTGTATC 59.783 41.667 0.00 0.00 34.84 2.24
2148 4758 4.145807 TCCCACAACGTTCCAAATTGTAT 58.854 39.130 0.00 0.00 34.84 2.29
2149 4759 3.552875 TCCCACAACGTTCCAAATTGTA 58.447 40.909 0.00 0.00 34.84 2.41
2150 4760 2.379972 TCCCACAACGTTCCAAATTGT 58.620 42.857 0.00 0.00 37.02 2.71
2151 4761 3.444703 TTCCCACAACGTTCCAAATTG 57.555 42.857 0.00 0.00 0.00 2.32
2152 4762 3.735514 CGTTTCCCACAACGTTCCAAATT 60.736 43.478 0.00 0.00 43.72 1.82
2153 4763 2.223618 CGTTTCCCACAACGTTCCAAAT 60.224 45.455 0.00 0.00 43.72 2.32
2173 4783 6.422701 TGACACTTGGTAATTTACTCTGAACG 59.577 38.462 6.52 0.00 0.00 3.95
2181 4791 6.708949 TCCAACTCTGACACTTGGTAATTTAC 59.291 38.462 0.00 0.00 36.57 2.01
2198 4808 3.896888 TGTTCCAAAATGCATCCAACTCT 59.103 39.130 0.00 0.00 0.00 3.24
2208 4821 4.186159 CCTTCCATGATGTTCCAAAATGC 58.814 43.478 0.00 0.00 0.00 3.56
2213 4826 3.605634 CGTACCTTCCATGATGTTCCAA 58.394 45.455 0.00 0.00 0.00 3.53
2224 4837 1.621814 CTTCCTTCACCGTACCTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
2231 4844 4.202284 ACTGCTTTAACTTCCTTCACCGTA 60.202 41.667 0.00 0.00 0.00 4.02
2232 4845 3.139077 CTGCTTTAACTTCCTTCACCGT 58.861 45.455 0.00 0.00 0.00 4.83
2233 4846 3.139077 ACTGCTTTAACTTCCTTCACCG 58.861 45.455 0.00 0.00 0.00 4.94
2234 4847 4.390264 AGACTGCTTTAACTTCCTTCACC 58.610 43.478 0.00 0.00 0.00 4.02
2235 4848 7.308049 CCTTAAGACTGCTTTAACTTCCTTCAC 60.308 40.741 3.36 0.00 35.56 3.18
2236 4849 6.710744 CCTTAAGACTGCTTTAACTTCCTTCA 59.289 38.462 3.36 0.00 35.56 3.02
2238 4851 6.838382 TCCTTAAGACTGCTTTAACTTCCTT 58.162 36.000 3.36 0.00 35.56 3.36
2241 4854 7.012989 TGGTTTCCTTAAGACTGCTTTAACTTC 59.987 37.037 3.36 0.00 35.56 3.01
2245 4874 5.768164 CCTGGTTTCCTTAAGACTGCTTTAA 59.232 40.000 3.36 0.00 35.56 1.52
2247 4876 4.145052 CCTGGTTTCCTTAAGACTGCTTT 58.855 43.478 3.36 0.00 35.56 3.51
2250 4879 2.814336 CACCTGGTTTCCTTAAGACTGC 59.186 50.000 3.36 0.00 0.00 4.40
2258 4891 6.719829 CCTTCTAAAATACACCTGGTTTCCTT 59.280 38.462 0.00 0.00 0.00 3.36
2283 4920 1.484240 AGAGTTGAGCTGGCACTATCC 59.516 52.381 0.00 0.00 0.00 2.59
2286 4923 2.808919 ACTAGAGTTGAGCTGGCACTA 58.191 47.619 0.00 0.00 0.00 2.74
2332 4971 4.223144 AGTTTTCAGGTGTAAAGGGCAAT 58.777 39.130 0.00 0.00 0.00 3.56
2422 5061 3.898123 TCAGCTAACCACTTCTGAAGACT 59.102 43.478 23.36 7.32 33.17 3.24
2423 5062 4.258702 TCAGCTAACCACTTCTGAAGAC 57.741 45.455 23.36 4.42 33.17 3.01
2428 5067 3.076621 TGCAATCAGCTAACCACTTCTG 58.923 45.455 0.00 0.00 45.94 3.02
2534 5197 3.297134 AACCAACACAACTCTCATGGT 57.703 42.857 0.00 0.00 42.70 3.55
2541 5204 3.993736 ACAAGCAAAAACCAACACAACTC 59.006 39.130 0.00 0.00 0.00 3.01
2542 5205 3.745458 CACAAGCAAAAACCAACACAACT 59.255 39.130 0.00 0.00 0.00 3.16
2543 5206 3.666638 GCACAAGCAAAAACCAACACAAC 60.667 43.478 0.00 0.00 41.58 3.32
2544 5207 2.481952 GCACAAGCAAAAACCAACACAA 59.518 40.909 0.00 0.00 41.58 3.33
2559 5222 1.278985 TCCCTCTGGTACATGCACAAG 59.721 52.381 0.00 0.00 38.20 3.16
2566 5229 7.797121 ATTTTGATTTTTCCCTCTGGTACAT 57.203 32.000 0.00 0.00 38.20 2.29
2574 5237 7.903995 TTGCACATATTTTGATTTTTCCCTC 57.096 32.000 0.00 0.00 0.00 4.30
2579 5242 9.675464 ATGGAGATTGCACATATTTTGATTTTT 57.325 25.926 0.00 0.00 0.00 1.94
2590 5253 7.286313 TGGTAATTGTATGGAGATTGCACATA 58.714 34.615 0.00 0.00 0.00 2.29
2612 5275 9.905713 TTCTAGCAAAACTGATATCTTTATGGT 57.094 29.630 3.98 5.40 0.00 3.55
2617 5280 9.678260 ATGAGTTCTAGCAAAACTGATATCTTT 57.322 29.630 3.98 0.00 37.10 2.52
2618 5281 9.323985 GATGAGTTCTAGCAAAACTGATATCTT 57.676 33.333 3.98 0.00 37.10 2.40
2619 5282 8.885494 GATGAGTTCTAGCAAAACTGATATCT 57.115 34.615 3.98 0.00 37.10 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.