Multiple sequence alignment - TraesCS5B01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G416600 chr5B 100.000 6221 0 0 982 7202 591195856 591189636 0.000000e+00 11489.0
1 TraesCS5B01G416600 chr5B 100.000 622 0 0 1 622 591196837 591196216 0.000000e+00 1149.0
2 TraesCS5B01G416600 chr5B 83.989 737 91 13 4904 5624 591177576 591176851 0.000000e+00 682.0
3 TraesCS5B01G416600 chr5B 86.928 306 24 9 983 1287 591239021 591238731 5.390000e-86 329.0
4 TraesCS5B01G416600 chr5B 83.651 367 27 13 6836 7202 106155226 106155559 1.510000e-81 315.0
5 TraesCS5B01G416600 chr5B 97.872 47 0 1 6649 6695 106155101 106155146 5.990000e-11 80.5
6 TraesCS5B01G416600 chr5D 98.972 2822 28 1 2458 5279 481987668 481984848 0.000000e+00 5049.0
7 TraesCS5B01G416600 chr5D 93.872 1485 63 13 983 2448 481989863 481988388 0.000000e+00 2213.0
8 TraesCS5B01G416600 chr5D 86.308 1395 148 28 4863 6222 481979733 481978347 0.000000e+00 1478.0
9 TraesCS5B01G416600 chr5D 89.267 1118 80 23 5126 6222 481959145 481958047 0.000000e+00 1363.0
10 TraesCS5B01G416600 chr5D 93.296 537 28 5 5313 5844 481984846 481984313 0.000000e+00 785.0
11 TraesCS5B01G416600 chr5D 88.948 561 39 9 45 600 481990708 481990166 0.000000e+00 671.0
12 TraesCS5B01G416600 chr5D 90.546 476 32 5 6736 7200 481983412 481982939 1.030000e-172 617.0
13 TraesCS5B01G416600 chr5D 93.169 366 24 1 5844 6208 481984064 481983699 2.960000e-148 536.0
14 TraesCS5B01G416600 chr5D 86.375 411 37 5 4652 5062 481971555 481971164 1.440000e-116 431.0
15 TraesCS5B01G416600 chr5D 89.767 215 13 3 6496 6702 481983609 481983396 4.280000e-67 267.0
16 TraesCS5B01G416600 chr5D 84.834 211 21 8 5621 5826 481954669 481954465 1.230000e-47 202.0
17 TraesCS5B01G416600 chr5D 89.474 76 8 0 5054 5129 481970927 481970852 5.950000e-16 97.1
18 TraesCS5B01G416600 chr5D 94.643 56 3 0 4875 4930 481979831 481979776 3.580000e-13 87.9
19 TraesCS5B01G416600 chr5A 94.584 2862 113 19 2943 5777 601616330 601613484 0.000000e+00 4388.0
20 TraesCS5B01G416600 chr5A 91.712 1484 91 10 983 2443 601618965 601617491 0.000000e+00 2030.0
21 TraesCS5B01G416600 chr5A 89.842 1457 82 24 5775 7200 601613381 601611960 0.000000e+00 1810.0
22 TraesCS5B01G416600 chr5A 95.385 325 7 5 282 605 601619664 601619347 1.790000e-140 510.0
23 TraesCS5B01G416600 chr5A 88.158 380 38 5 2480 2854 601616722 601616345 5.130000e-121 446.0
24 TraesCS5B01G416600 chr5A 95.000 60 3 0 4875 4934 601541450 601541391 2.140000e-15 95.3
25 TraesCS5B01G416600 chr5A 91.667 60 5 0 4875 4934 601533741 601533682 4.630000e-12 84.2
26 TraesCS5B01G416600 chr5A 97.674 43 1 0 4863 4905 601533643 601533601 2.790000e-09 75.0
27 TraesCS5B01G416600 chr5A 97.674 43 1 0 4863 4905 601541352 601541310 2.790000e-09 75.0
28 TraesCS5B01G416600 chrUn 97.826 46 1 0 2899 2944 96131576 96131531 5.990000e-11 80.5
29 TraesCS5B01G416600 chr7D 82.796 93 7 3 6649 6741 617523187 617523104 2.790000e-09 75.0
30 TraesCS5B01G416600 chr6D 94.000 50 2 1 2896 2944 260041883 260041932 2.790000e-09 75.0
31 TraesCS5B01G416600 chr4D 86.301 73 5 1 2877 2944 1172841 1172913 2.790000e-09 75.0
32 TraesCS5B01G416600 chr2A 92.157 51 3 1 2894 2944 50152803 50152852 3.600000e-08 71.3
33 TraesCS5B01G416600 chr1A 88.525 61 4 3 2896 2953 84009946 84009886 3.600000e-08 71.3
34 TraesCS5B01G416600 chr6B 92.000 50 3 1 2896 2944 308523009 308523058 1.300000e-07 69.4
35 TraesCS5B01G416600 chr3D 93.478 46 3 0 2899 2944 502949426 502949381 1.300000e-07 69.4
36 TraesCS5B01G416600 chr3A 93.478 46 3 0 2899 2944 641800638 641800593 1.300000e-07 69.4
37 TraesCS5B01G416600 chr2B 100.000 29 0 0 2869 2897 796805878 796805906 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G416600 chr5B 591189636 591196837 7201 True 6319.000000 11489 100.0000 1 7202 2 chr5B.!!$R3 7201
1 TraesCS5B01G416600 chr5B 591176851 591177576 725 True 682.000000 682 83.9890 4904 5624 1 chr5B.!!$R1 720
2 TraesCS5B01G416600 chr5D 481978347 481990708 12361 True 1300.433333 5049 92.1690 45 7200 9 chr5D.!!$R3 7155
3 TraesCS5B01G416600 chr5D 481954465 481959145 4680 True 782.500000 1363 87.0505 5126 6222 2 chr5D.!!$R1 1096
4 TraesCS5B01G416600 chr5D 481970852 481971555 703 True 264.050000 431 87.9245 4652 5129 2 chr5D.!!$R2 477
5 TraesCS5B01G416600 chr5A 601611960 601619664 7704 True 1836.800000 4388 91.9362 282 7200 5 chr5A.!!$R3 6918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.034756 CTCGGTGTCACACATTCCCA 59.965 55.0 10.85 0.00 35.86 4.37 F
1374 1406 0.310232 GCTTCTACTACGGCTACGGG 59.690 60.0 0.00 0.00 46.48 5.28 F
1791 1829 0.257039 ATGTTGAGGTGGAGGATGCC 59.743 55.0 0.00 0.00 0.00 4.40 F
2450 2498 0.108756 GAAAGGCGTAAGAGAGGCGT 60.109 55.0 0.00 0.00 39.97 5.68 F
3354 4168 0.679505 TAGTGACAGAGTGTGTGGCC 59.320 55.0 0.00 0.00 40.56 5.36 F
3360 4174 1.016130 CAGAGTGTGTGGCCGATCAC 61.016 60.0 15.52 15.52 38.09 3.06 F
4715 5529 1.733402 TTCGGTTTTGCTGCTGTGGG 61.733 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1628 1.002011 GCTCTTCTTCCCGGGCTTT 60.002 57.895 18.49 0.00 0.00 3.51 R
2175 2213 1.002366 CGTGAGCCTCATTGTAGCAC 58.998 55.000 0.00 0.00 0.00 4.40 R
2967 3780 4.762765 ACAAAGGGCAAACAATCATACGTA 59.237 37.500 0.00 0.00 0.00 3.57 R
4386 5200 0.820891 ACAGCTCAAACAGTGCAGGG 60.821 55.000 0.00 0.00 39.15 4.45 R
5004 5818 0.240411 CAAGAGGACTTTGCTGCTGC 59.760 55.000 8.89 8.89 35.38 5.25 R
5263 6330 4.576330 AACAGGGGTCTATGGAAAAGAG 57.424 45.455 0.00 0.00 0.00 2.85 R
6439 7890 0.107017 CACCCTTGTATCTGGCCCAG 60.107 60.000 3.69 3.69 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.765182 ACATGTGAAATCGAAACTCTCCTTT 59.235 36.000 0.00 0.00 0.00 3.11
66 67 1.230324 GAAACTCTCCTTTGCGCACT 58.770 50.000 11.12 0.00 0.00 4.40
67 68 0.947244 AAACTCTCCTTTGCGCACTG 59.053 50.000 11.12 5.58 0.00 3.66
81 82 1.227234 CACTGCACTCGGTGTCACA 60.227 57.895 5.12 0.00 43.06 3.58
85 86 0.179059 TGCACTCGGTGTCACACATT 60.179 50.000 10.85 0.00 35.86 2.71
88 89 0.034896 ACTCGGTGTCACACATTCCC 59.965 55.000 10.85 0.00 35.86 3.97
89 90 0.034756 CTCGGTGTCACACATTCCCA 59.965 55.000 10.85 0.00 35.86 4.37
92 93 1.885887 CGGTGTCACACATTCCCATTT 59.114 47.619 10.85 0.00 35.86 2.32
93 94 2.095263 CGGTGTCACACATTCCCATTTC 60.095 50.000 10.85 0.00 35.86 2.17
94 95 2.890311 GGTGTCACACATTCCCATTTCA 59.110 45.455 10.85 0.00 35.86 2.69
118 123 4.899502 ACCCTCTAGCAATGGATAATTCG 58.100 43.478 0.00 0.00 0.00 3.34
170 175 6.409704 TGTATCTTCTCTCCCATTTTCACAG 58.590 40.000 0.00 0.00 0.00 3.66
174 179 2.089980 CTCTCCCATTTTCACAGCCTG 58.910 52.381 0.00 0.00 0.00 4.85
177 182 1.707989 TCCCATTTTCACAGCCTGGTA 59.292 47.619 0.00 0.00 0.00 3.25
178 183 1.818674 CCCATTTTCACAGCCTGGTAC 59.181 52.381 0.00 0.00 0.00 3.34
179 184 1.818674 CCATTTTCACAGCCTGGTACC 59.181 52.381 4.43 4.43 0.00 3.34
183 188 0.840617 TTCACAGCCTGGTACCAACA 59.159 50.000 17.11 0.00 0.00 3.33
203 208 9.103861 ACCAACAACGATTCATAATTTGTTTTT 57.896 25.926 0.00 0.00 38.11 1.94
231 236 5.600484 ACCCTCTTCCTAGACATTGTGATAG 59.400 44.000 0.00 0.00 0.00 2.08
235 240 7.147828 CCTCTTCCTAGACATTGTGATAGAACA 60.148 40.741 0.00 0.00 0.00 3.18
237 242 8.200120 TCTTCCTAGACATTGTGATAGAACATG 58.800 37.037 0.00 0.00 0.00 3.21
238 243 7.423844 TCCTAGACATTGTGATAGAACATGT 57.576 36.000 0.00 0.00 0.00 3.21
239 244 7.267857 TCCTAGACATTGTGATAGAACATGTG 58.732 38.462 0.00 0.00 0.00 3.21
240 245 7.044181 CCTAGACATTGTGATAGAACATGTGT 58.956 38.462 0.00 0.00 34.13 3.72
241 246 6.732531 AGACATTGTGATAGAACATGTGTG 57.267 37.500 0.00 0.00 32.60 3.82
242 247 6.233434 AGACATTGTGATAGAACATGTGTGT 58.767 36.000 0.00 0.00 41.28 3.72
243 248 6.148315 AGACATTGTGATAGAACATGTGTGTG 59.852 38.462 0.00 0.00 38.92 3.82
244 249 4.747540 TTGTGATAGAACATGTGTGTGC 57.252 40.909 0.00 0.00 38.92 4.57
245 250 4.006780 TGTGATAGAACATGTGTGTGCT 57.993 40.909 0.00 0.00 46.30 4.40
246 251 3.747529 TGTGATAGAACATGTGTGTGCTG 59.252 43.478 0.00 0.00 44.25 4.41
247 252 3.996363 GTGATAGAACATGTGTGTGCTGA 59.004 43.478 0.00 0.00 44.25 4.26
248 253 3.996363 TGATAGAACATGTGTGTGCTGAC 59.004 43.478 0.00 0.00 44.25 3.51
249 254 2.627515 AGAACATGTGTGTGCTGACT 57.372 45.000 0.00 0.00 42.87 3.41
250 255 2.216046 AGAACATGTGTGTGCTGACTG 58.784 47.619 0.00 0.00 42.87 3.51
251 256 1.942657 GAACATGTGTGTGCTGACTGT 59.057 47.619 0.00 0.00 38.92 3.55
280 285 1.872237 CGGCCCCACAATCAGTATACG 60.872 57.143 0.00 0.00 0.00 3.06
281 286 1.226746 GCCCCACAATCAGTATACGC 58.773 55.000 0.00 0.00 0.00 4.42
283 288 2.912771 CCCCACAATCAGTATACGCAA 58.087 47.619 0.00 0.00 0.00 4.85
502 507 1.450312 CCACACCCTTCTCCGCATC 60.450 63.158 0.00 0.00 0.00 3.91
503 508 1.450312 CACACCCTTCTCCGCATCC 60.450 63.158 0.00 0.00 0.00 3.51
504 509 1.918293 ACACCCTTCTCCGCATCCA 60.918 57.895 0.00 0.00 0.00 3.41
505 510 1.450312 CACCCTTCTCCGCATCCAC 60.450 63.158 0.00 0.00 0.00 4.02
1238 1258 2.674220 GGGAGGAGGGCAAGTGGAG 61.674 68.421 0.00 0.00 0.00 3.86
1344 1376 4.863984 GAGTTCGACTCCGTCCAC 57.136 61.111 4.29 0.00 39.28 4.02
1374 1406 0.310232 GCTTCTACTACGGCTACGGG 59.690 60.000 0.00 0.00 46.48 5.28
1485 1517 4.222145 AGAGGCAATTACTCGTACAGGAAA 59.778 41.667 0.00 0.00 39.90 3.13
1509 1541 4.275196 GGTAATAAAGCCAAGGATTCGGAC 59.725 45.833 0.00 0.00 0.00 4.79
1510 1542 2.413310 TAAAGCCAAGGATTCGGACC 57.587 50.000 0.00 0.00 0.00 4.46
1530 1562 2.370445 CGCCAAGGAGGTGGAGGAT 61.370 63.158 0.00 0.00 44.45 3.24
1539 1571 4.479993 GTGGAGGATGGCGCTGCT 62.480 66.667 7.64 0.00 0.00 4.24
1566 1604 1.572689 GGGAAGGGGAAGGGAAGGTC 61.573 65.000 0.00 0.00 0.00 3.85
1568 1606 0.908180 GAAGGGGAAGGGAAGGTCGA 60.908 60.000 0.00 0.00 0.00 4.20
1590 1628 4.375406 CCTAAGAAGAGGGGCCGA 57.625 61.111 0.00 0.00 32.39 5.54
1791 1829 0.257039 ATGTTGAGGTGGAGGATGCC 59.743 55.000 0.00 0.00 0.00 4.40
1845 1883 1.086067 ACGATGCTGGTTCTGATGCG 61.086 55.000 0.00 0.00 0.00 4.73
1847 1885 1.442526 GATGCTGGTTCTGATGCGGG 61.443 60.000 0.00 0.00 0.00 6.13
1856 1894 2.927856 TGATGCGGGTGAGGGTGT 60.928 61.111 0.00 0.00 0.00 4.16
1878 1916 0.771127 TGGAAAAGGAGGTGGAGGTG 59.229 55.000 0.00 0.00 0.00 4.00
2107 2145 3.335579 AGTTGTGGCGGAGATAAAGAAC 58.664 45.455 0.00 0.00 0.00 3.01
2194 2232 1.002366 GTGCTACAATGAGGCTCACG 58.998 55.000 21.37 16.39 0.00 4.35
2257 2299 8.850156 GCACATCAATATTTATGGGAACTTACT 58.150 33.333 14.73 0.00 0.00 2.24
2448 2496 0.806492 CGGAAAGGCGTAAGAGAGGC 60.806 60.000 0.00 0.00 43.02 4.70
2450 2498 0.108756 GAAAGGCGTAAGAGAGGCGT 60.109 55.000 0.00 0.00 39.97 5.68
2451 2499 1.133790 GAAAGGCGTAAGAGAGGCGTA 59.866 52.381 0.00 0.00 39.97 4.42
2452 2500 1.180029 AAGGCGTAAGAGAGGCGTAA 58.820 50.000 0.00 0.00 39.97 3.18
2456 2504 1.669779 GCGTAAGAGAGGCGTAAGAGA 59.330 52.381 0.00 0.00 39.62 3.10
2470 3278 5.288952 GGCGTAAGAGAGTTGTATCTTTGTC 59.711 44.000 0.00 0.00 35.77 3.18
2472 3280 6.586844 GCGTAAGAGAGTTGTATCTTTGTCTT 59.413 38.462 0.00 0.00 35.77 3.01
2688 3501 7.966246 TGAAAAGAAGGTAGCGTACAAAATA 57.034 32.000 0.00 0.00 0.00 1.40
3010 3824 3.840666 TGTCCAGCCTGAGAGTAAAGAAT 59.159 43.478 0.00 0.00 0.00 2.40
3354 4168 0.679505 TAGTGACAGAGTGTGTGGCC 59.320 55.000 0.00 0.00 40.56 5.36
3360 4174 1.016130 CAGAGTGTGTGGCCGATCAC 61.016 60.000 15.52 15.52 38.09 3.06
3654 4468 5.533903 GGCAGATGTTAAATCAGTGATGGAT 59.466 40.000 6.34 0.00 0.00 3.41
4386 5200 5.245531 TGGCAAGCTGCTAATACATATACC 58.754 41.667 0.90 0.00 44.28 2.73
4715 5529 1.733402 TTCGGTTTTGCTGCTGTGGG 61.733 55.000 0.00 0.00 0.00 4.61
4848 5662 3.497405 GCCAATATGATCAGCTCCTGGAA 60.497 47.826 13.42 0.00 31.51 3.53
5004 5818 9.769093 AAAAATAAAAATGTAGAGAATCGTCGG 57.231 29.630 0.00 0.00 42.67 4.79
5263 6330 5.819379 TCATCTGATGCAGGTGAAACTTATC 59.181 40.000 12.78 0.00 46.86 1.75
5311 6392 7.336396 TGATGAACAGATGAGTGAAGATGATT 58.664 34.615 0.00 0.00 0.00 2.57
5391 6474 2.752354 GGCACCATATGTTACACAGCAA 59.248 45.455 1.24 0.00 0.00 3.91
5454 6537 0.327924 TTGGGCAGGTAGTGGACATG 59.672 55.000 0.00 0.00 42.88 3.21
5610 6694 2.559668 ACAAATGCACCAGGTGATTCTG 59.440 45.455 24.96 15.71 35.23 3.02
5616 6700 2.028748 GCACCAGGTGATTCTGCATTTT 60.029 45.455 24.96 0.00 35.23 1.82
5761 6848 6.556874 CCCCTCTAGAATAAGTTCTCTCCATT 59.443 42.308 0.00 0.00 43.50 3.16
5785 6977 7.379059 TGGAGATATTCATGTAGGTGATGTT 57.621 36.000 0.00 0.00 0.00 2.71
5801 6993 2.218953 TGTTGTCGGTCAAGTGACTC 57.781 50.000 11.07 1.43 44.20 3.36
5802 6994 1.754803 TGTTGTCGGTCAAGTGACTCT 59.245 47.619 11.07 0.00 44.20 3.24
5836 7028 3.865446 ACATCACATGAGCTCATTCGAA 58.135 40.909 26.70 12.66 33.61 3.71
5866 7307 9.744468 TTTCTTGTTGGCTAATTTTCTTAAGAC 57.256 29.630 4.18 0.00 0.00 3.01
6000 7442 0.550147 AAGGCCAGTACACCATCCCT 60.550 55.000 5.01 0.00 0.00 4.20
6051 7493 6.072175 TGTGTTTATGCCAGAATGTAGAAACC 60.072 38.462 0.00 0.00 34.03 3.27
6056 7498 2.492088 GCCAGAATGTAGAAACCCAACC 59.508 50.000 0.00 0.00 0.00 3.77
6059 7501 5.505780 CCAGAATGTAGAAACCCAACCATA 58.494 41.667 0.00 0.00 0.00 2.74
6166 7608 1.519408 CACTGGTAAAACCTGGACCG 58.481 55.000 0.00 0.00 41.00 4.79
6191 7635 7.466860 CGAACCTTTATACTATGGGTGAAAAGC 60.467 40.741 0.00 0.00 33.49 3.51
6217 7661 3.385577 GCCGTGTTGAAAGCCATAAAAA 58.614 40.909 0.00 0.00 0.00 1.94
6222 7666 5.120519 CGTGTTGAAAGCCATAAAAATGCAT 59.879 36.000 0.00 0.00 0.00 3.96
6270 7721 2.124778 GCAAGGCCAGGAGCTCTC 60.125 66.667 14.64 3.76 43.05 3.20
6326 7777 0.250727 CTGAGGGAAAACTGGGCGAA 60.251 55.000 0.00 0.00 0.00 4.70
6331 7782 2.158579 AGGGAAAACTGGGCGAAAACTA 60.159 45.455 0.00 0.00 0.00 2.24
6375 7826 2.930109 AAGGAAGACTAGAGCCTGGA 57.070 50.000 0.00 0.00 0.00 3.86
6377 7828 1.643811 AGGAAGACTAGAGCCTGGAGT 59.356 52.381 0.00 0.00 0.00 3.85
6391 7842 4.783227 AGCCTGGAGTTAAGGTTTAGATGA 59.217 41.667 0.00 0.00 37.13 2.92
6392 7843 5.104735 AGCCTGGAGTTAAGGTTTAGATGAG 60.105 44.000 0.00 0.00 37.13 2.90
6400 7851 9.547753 GAGTTAAGGTTTAGATGAGCATATTCA 57.452 33.333 0.00 0.00 0.00 2.57
6434 7885 6.558009 CATAACATCAAGGAACATTGTCTGG 58.442 40.000 0.00 0.00 0.00 3.86
6435 7886 3.424703 ACATCAAGGAACATTGTCTGGG 58.575 45.455 0.00 0.00 0.00 4.45
6436 7887 2.584835 TCAAGGAACATTGTCTGGGG 57.415 50.000 0.00 0.00 0.00 4.96
6437 7888 0.890683 CAAGGAACATTGTCTGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
6438 7889 0.779997 AAGGAACATTGTCTGGGGCT 59.220 50.000 0.00 0.00 0.00 5.19
6439 7890 0.329596 AGGAACATTGTCTGGGGCTC 59.670 55.000 0.00 0.00 0.00 4.70
6440 7891 0.329596 GGAACATTGTCTGGGGCTCT 59.670 55.000 0.00 0.00 0.00 4.09
6441 7892 1.457346 GAACATTGTCTGGGGCTCTG 58.543 55.000 0.00 0.00 0.00 3.35
6442 7893 0.038744 AACATTGTCTGGGGCTCTGG 59.961 55.000 0.00 0.00 0.00 3.86
6457 7908 0.253160 TCTGGGCCAGATACAAGGGT 60.253 55.000 32.01 0.00 35.39 4.34
6460 7911 1.609783 GGCCAGATACAAGGGTGCT 59.390 57.895 0.00 0.00 0.00 4.40
6473 7924 1.147817 AGGGTGCTGAATCCCAAAACT 59.852 47.619 3.04 0.00 45.64 2.66
6542 8037 2.622011 GCCATTTTGTCGACGCCCA 61.622 57.895 11.62 0.00 0.00 5.36
6543 8038 1.933115 GCCATTTTGTCGACGCCCAT 61.933 55.000 11.62 0.00 0.00 4.00
6549 8044 0.250124 TTGTCGACGCCCATCAAAGT 60.250 50.000 11.62 0.00 0.00 2.66
6581 8083 6.349445 CGGAAAGAGGCTTATCGTACATATCT 60.349 42.308 0.00 0.00 0.00 1.98
6606 8108 6.628644 AGGTAAGCCTTAATCTTGTTCTCT 57.371 37.500 0.00 0.00 44.18 3.10
6645 8155 1.649321 TCTCCAGCATCTGAGGTTGT 58.351 50.000 5.49 0.00 32.44 3.32
6736 8246 2.438434 CCTCGGGCCGCTTGATTT 60.438 61.111 23.83 0.00 0.00 2.17
6737 8247 2.046285 CCTCGGGCCGCTTGATTTT 61.046 57.895 23.83 0.00 0.00 1.82
6738 8248 1.595093 CCTCGGGCCGCTTGATTTTT 61.595 55.000 23.83 0.00 0.00 1.94
6739 8249 1.091537 CTCGGGCCGCTTGATTTTTA 58.908 50.000 23.83 0.00 0.00 1.52
6740 8250 1.064060 CTCGGGCCGCTTGATTTTTAG 59.936 52.381 23.83 5.17 0.00 1.85
6741 8251 0.525455 CGGGCCGCTTGATTTTTAGC 60.525 55.000 15.42 0.00 0.00 3.09
6748 8258 3.831715 GCTTGATTTTTAGCGGACAGT 57.168 42.857 0.00 0.00 0.00 3.55
6749 8259 3.492313 GCTTGATTTTTAGCGGACAGTG 58.508 45.455 0.00 0.00 0.00 3.66
6750 8260 3.492313 CTTGATTTTTAGCGGACAGTGC 58.508 45.455 0.00 0.00 0.00 4.40
6751 8261 1.463056 TGATTTTTAGCGGACAGTGCG 59.537 47.619 10.60 10.60 37.44 5.34
6752 8262 0.802494 ATTTTTAGCGGACAGTGCGG 59.198 50.000 16.91 0.00 37.44 5.69
6753 8263 1.847890 TTTTTAGCGGACAGTGCGGC 61.848 55.000 16.91 8.56 37.44 6.53
6754 8264 2.997952 TTTTAGCGGACAGTGCGGCA 62.998 55.000 16.91 0.00 36.67 5.69
6755 8265 3.932580 TTAGCGGACAGTGCGGCAG 62.933 63.158 16.91 0.00 36.67 4.85
6783 8336 1.470098 AGCAACCAATCGTTCTCATGC 59.530 47.619 0.00 0.00 29.93 4.06
6787 8340 1.003580 ACCAATCGTTCTCATGCCAGT 59.996 47.619 0.00 0.00 0.00 4.00
6791 8344 3.610040 ATCGTTCTCATGCCAGTAACA 57.390 42.857 0.00 0.00 0.00 2.41
6848 8401 3.001330 GTGGAATGCGTCTATTTCCGAAG 59.999 47.826 0.00 0.00 0.00 3.79
6947 8500 4.081406 TCAACAGGCTAATGCATCACTTT 58.919 39.130 0.00 0.00 41.91 2.66
6971 8531 1.134280 CCAACCCTGTAGCTCATGAGG 60.134 57.143 23.89 9.01 0.00 3.86
7030 8597 4.695455 GTGAACACTGGTATACATGCAACT 59.305 41.667 5.01 0.00 0.00 3.16
7048 8618 4.566759 GCAACTTTTTCTGTCCAAGGAAAC 59.433 41.667 0.00 0.00 32.77 2.78
7063 8633 3.497332 AGGAAACCCCTTTTAAGTCTGC 58.503 45.455 0.00 0.00 44.85 4.26
7079 8649 2.259511 GCTTTTTCAGCCTGCCCG 59.740 61.111 0.00 0.00 43.65 6.13
7110 8680 2.991190 CTGAATGTTGCCAATCAAGTGC 59.009 45.455 0.00 0.00 34.91 4.40
7153 8723 1.140312 GCTGGATATGGACCTTGGGA 58.860 55.000 0.00 0.00 0.00 4.37
7186 8757 3.372025 GGCTTGGCCCTAATAGGATATGG 60.372 52.174 8.12 0.00 44.06 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.323985 TCGATTTCACATGTGTATTCAATGATA 57.676 29.630 24.63 0.00 0.00 2.15
23 24 8.212317 TCGATTTCACATGTGTATTCAATGAT 57.788 30.769 24.63 4.63 0.00 2.45
24 25 7.608308 TCGATTTCACATGTGTATTCAATGA 57.392 32.000 24.63 11.14 0.00 2.57
25 26 8.577939 GTTTCGATTTCACATGTGTATTCAATG 58.422 33.333 24.63 9.30 0.00 2.82
26 27 8.514594 AGTTTCGATTTCACATGTGTATTCAAT 58.485 29.630 24.63 15.16 0.00 2.57
27 28 7.870826 AGTTTCGATTTCACATGTGTATTCAA 58.129 30.769 24.63 9.16 0.00 2.69
28 29 7.387673 AGAGTTTCGATTTCACATGTGTATTCA 59.612 33.333 24.63 2.71 0.00 2.57
29 30 7.743104 AGAGTTTCGATTTCACATGTGTATTC 58.257 34.615 24.63 18.57 0.00 1.75
30 31 7.148407 GGAGAGTTTCGATTTCACATGTGTATT 60.148 37.037 24.63 12.22 0.00 1.89
31 32 6.313905 GGAGAGTTTCGATTTCACATGTGTAT 59.686 38.462 24.63 18.41 0.00 2.29
32 33 5.637810 GGAGAGTTTCGATTTCACATGTGTA 59.362 40.000 24.63 13.57 0.00 2.90
33 34 4.452455 GGAGAGTTTCGATTTCACATGTGT 59.548 41.667 24.63 6.43 0.00 3.72
34 35 4.692625 AGGAGAGTTTCGATTTCACATGTG 59.307 41.667 20.18 20.18 0.00 3.21
35 36 4.899502 AGGAGAGTTTCGATTTCACATGT 58.100 39.130 0.00 0.00 0.00 3.21
36 37 5.869753 AAGGAGAGTTTCGATTTCACATG 57.130 39.130 0.00 0.00 0.00 3.21
37 38 5.335191 GCAAAGGAGAGTTTCGATTTCACAT 60.335 40.000 0.00 0.00 0.00 3.21
38 39 4.024048 GCAAAGGAGAGTTTCGATTTCACA 60.024 41.667 0.00 0.00 0.00 3.58
39 40 4.467735 GCAAAGGAGAGTTTCGATTTCAC 58.532 43.478 0.00 0.00 0.00 3.18
40 41 3.186409 CGCAAAGGAGAGTTTCGATTTCA 59.814 43.478 0.00 0.00 0.00 2.69
41 42 3.737305 CGCAAAGGAGAGTTTCGATTTC 58.263 45.455 0.00 0.00 0.00 2.17
42 43 2.095718 GCGCAAAGGAGAGTTTCGATTT 60.096 45.455 0.30 0.00 0.00 2.17
43 44 1.464997 GCGCAAAGGAGAGTTTCGATT 59.535 47.619 0.30 0.00 0.00 3.34
66 67 0.179059 AATGTGTGACACCGAGTGCA 60.179 50.000 13.85 0.00 36.98 4.57
67 68 0.512952 GAATGTGTGACACCGAGTGC 59.487 55.000 13.85 0.00 36.98 4.40
70 71 0.034756 TGGGAATGTGTGACACCGAG 59.965 55.000 13.85 0.00 32.73 4.63
72 73 1.533625 AATGGGAATGTGTGACACCG 58.466 50.000 13.85 0.00 32.73 4.94
81 82 4.132122 AGAGGGTTTGAAATGGGAATGT 57.868 40.909 0.00 0.00 0.00 2.71
85 86 2.647299 TGCTAGAGGGTTTGAAATGGGA 59.353 45.455 0.00 0.00 0.00 4.37
88 89 4.706476 TCCATTGCTAGAGGGTTTGAAATG 59.294 41.667 0.00 0.00 0.00 2.32
89 90 4.934356 TCCATTGCTAGAGGGTTTGAAAT 58.066 39.130 0.00 0.00 0.00 2.17
92 93 5.708736 TTATCCATTGCTAGAGGGTTTGA 57.291 39.130 0.00 0.00 0.00 2.69
93 94 6.293626 CGAATTATCCATTGCTAGAGGGTTTG 60.294 42.308 0.00 0.00 0.00 2.93
94 95 5.765182 CGAATTATCCATTGCTAGAGGGTTT 59.235 40.000 0.00 0.00 0.00 3.27
118 123 1.077089 GTACTGCCCGTCTCGCTTTC 61.077 60.000 0.00 0.00 0.00 2.62
126 131 1.153881 GTTCCTCGTACTGCCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
151 156 2.751806 GGCTGTGAAAATGGGAGAGAAG 59.248 50.000 0.00 0.00 0.00 2.85
154 159 2.089980 CAGGCTGTGAAAATGGGAGAG 58.910 52.381 6.28 0.00 0.00 3.20
158 163 1.818674 GTACCAGGCTGTGAAAATGGG 59.181 52.381 14.43 0.00 35.26 4.00
170 175 1.467342 GAATCGTTGTTGGTACCAGGC 59.533 52.381 15.65 12.66 0.00 4.85
174 179 7.309920 ACAAATTATGAATCGTTGTTGGTACC 58.690 34.615 4.43 4.43 0.00 3.34
177 182 8.655651 AAAACAAATTATGAATCGTTGTTGGT 57.344 26.923 1.23 0.00 40.53 3.67
203 208 4.597507 ACAATGTCTAGGAAGAGGGTTCAA 59.402 41.667 0.00 0.00 30.45 2.69
204 209 4.020218 CACAATGTCTAGGAAGAGGGTTCA 60.020 45.833 0.00 0.00 30.45 3.18
205 210 4.223032 TCACAATGTCTAGGAAGAGGGTTC 59.777 45.833 0.00 0.00 30.45 3.62
206 211 4.168101 TCACAATGTCTAGGAAGAGGGTT 58.832 43.478 0.00 0.00 30.45 4.11
207 212 3.791320 TCACAATGTCTAGGAAGAGGGT 58.209 45.455 0.00 0.00 30.45 4.34
208 213 5.835819 TCTATCACAATGTCTAGGAAGAGGG 59.164 44.000 0.00 0.00 30.45 4.30
209 214 6.968263 TCTATCACAATGTCTAGGAAGAGG 57.032 41.667 0.00 0.00 30.45 3.69
231 236 1.942657 ACAGTCAGCACACACATGTTC 59.057 47.619 0.00 0.00 36.72 3.18
235 240 1.942657 GTCAACAGTCAGCACACACAT 59.057 47.619 0.00 0.00 0.00 3.21
237 242 1.062587 GTGTCAACAGTCAGCACACAC 59.937 52.381 0.00 0.00 37.81 3.82
238 243 1.368641 GTGTCAACAGTCAGCACACA 58.631 50.000 0.00 0.00 37.81 3.72
239 244 0.657840 GGTGTCAACAGTCAGCACAC 59.342 55.000 0.00 0.00 37.27 3.82
240 245 0.809636 CGGTGTCAACAGTCAGCACA 60.810 55.000 0.00 0.00 33.12 4.57
241 246 1.934463 CGGTGTCAACAGTCAGCAC 59.066 57.895 0.00 0.00 33.12 4.40
242 247 1.887242 GCGGTGTCAACAGTCAGCA 60.887 57.895 0.00 0.00 33.12 4.41
243 248 2.939022 GCGGTGTCAACAGTCAGC 59.061 61.111 0.00 0.00 0.00 4.26
244 249 2.310233 CCGCGGTGTCAACAGTCAG 61.310 63.158 19.50 0.00 0.00 3.51
245 250 2.279851 CCGCGGTGTCAACAGTCA 60.280 61.111 19.50 0.00 0.00 3.41
246 251 3.712881 GCCGCGGTGTCAACAGTC 61.713 66.667 28.70 0.93 0.00 3.51
269 274 3.039011 AGGGGACTTGCGTATACTGATT 58.961 45.455 0.56 0.00 37.44 2.57
270 275 2.679082 AGGGGACTTGCGTATACTGAT 58.321 47.619 0.56 0.00 37.44 2.90
272 277 3.644884 CTAGGGGACTTGCGTATACTG 57.355 52.381 0.56 0.00 43.67 2.74
281 286 2.125106 GCCACGCTAGGGGACTTG 60.125 66.667 11.95 0.04 46.39 3.16
604 621 4.174129 GAAATGGCGCGGGTTCGG 62.174 66.667 8.83 0.00 36.79 4.30
1074 1094 4.507916 CGGGAGAGGGAGAGCGGA 62.508 72.222 0.00 0.00 0.00 5.54
1170 1190 1.890979 CATCATCGCCCTGCACCTC 60.891 63.158 0.00 0.00 0.00 3.85
1238 1258 2.282462 CCACCAGCTTGGACACCC 60.282 66.667 8.91 0.00 40.96 4.61
1374 1406 3.327404 TTGAACCCGGCCCTCTCC 61.327 66.667 0.00 0.00 0.00 3.71
1485 1517 4.165372 TCCGAATCCTTGGCTTTATTACCT 59.835 41.667 0.00 0.00 0.00 3.08
1510 1542 4.101448 CTCCACCTCCTTGGCGGG 62.101 72.222 0.46 0.00 38.56 6.13
1544 1576 1.230182 TTCCCTTCCCCTTCCCCTC 60.230 63.158 0.00 0.00 0.00 4.30
1566 1604 2.128729 CCTCTTCTTAGGGGCCTCG 58.871 63.158 0.84 0.00 34.53 4.63
1590 1628 1.002011 GCTCTTCTTCCCGGGCTTT 60.002 57.895 18.49 0.00 0.00 3.51
1693 1731 1.359130 CCCACCTCTCCCCAAATTCTT 59.641 52.381 0.00 0.00 0.00 2.52
1834 1872 1.450312 CCTCACCCGCATCAGAACC 60.450 63.158 0.00 0.00 0.00 3.62
1835 1873 1.450312 CCCTCACCCGCATCAGAAC 60.450 63.158 0.00 0.00 0.00 3.01
1845 1883 2.891191 TTTCCATTACACCCTCACCC 57.109 50.000 0.00 0.00 0.00 4.61
1847 1885 4.010349 CTCCTTTTCCATTACACCCTCAC 58.990 47.826 0.00 0.00 0.00 3.51
1856 1894 3.010138 CACCTCCACCTCCTTTTCCATTA 59.990 47.826 0.00 0.00 0.00 1.90
1878 1916 1.562008 CCCCTCCCTCTCTTTTCCTTC 59.438 57.143 0.00 0.00 0.00 3.46
2175 2213 1.002366 CGTGAGCCTCATTGTAGCAC 58.998 55.000 0.00 0.00 0.00 4.40
2194 2232 6.638468 CCTTTGTTTCTGAAATGAGCAAGTAC 59.362 38.462 6.06 0.00 0.00 2.73
2257 2299 7.662897 TGTCCTGATATATGCAACATACGTTA 58.337 34.615 0.00 0.00 32.75 3.18
2263 2305 8.922931 TGTTTATGTCCTGATATATGCAACAT 57.077 30.769 0.00 0.00 0.00 2.71
2448 2496 7.808381 TCAAGACAAAGATACAACTCTCTTACG 59.192 37.037 0.00 0.00 31.60 3.18
2450 2498 8.307483 CCTCAAGACAAAGATACAACTCTCTTA 58.693 37.037 0.00 0.00 31.60 2.10
2451 2499 7.158021 CCTCAAGACAAAGATACAACTCTCTT 58.842 38.462 0.00 0.00 33.19 2.85
2452 2500 6.268847 ACCTCAAGACAAAGATACAACTCTCT 59.731 38.462 0.00 0.00 0.00 3.10
2456 2504 6.268847 AGAGACCTCAAGACAAAGATACAACT 59.731 38.462 0.00 0.00 0.00 3.16
2540 3348 8.728833 AGAGAAGCTTCACATTTATTCTGAAAG 58.271 33.333 27.57 0.00 0.00 2.62
2967 3780 4.762765 ACAAAGGGCAAACAATCATACGTA 59.237 37.500 0.00 0.00 0.00 3.57
3010 3824 5.584649 CCTGTTCCGCTTCAACTATTTCATA 59.415 40.000 0.00 0.00 0.00 2.15
3360 4174 4.882427 ACAGGAGCTTCAAGATCATGATTG 59.118 41.667 23.22 6.18 44.15 2.67
3654 4468 9.577110 CATACTACATCACCGAAGTAGTTAAAA 57.423 33.333 14.91 1.24 42.04 1.52
4386 5200 0.820891 ACAGCTCAAACAGTGCAGGG 60.821 55.000 0.00 0.00 39.15 4.45
4715 5529 2.076863 CCGTGAACTTGGGATCTTCAC 58.923 52.381 12.48 12.48 40.20 3.18
4848 5662 4.427312 CTTGCAAAAGAAGCTCAACTTGT 58.573 39.130 0.00 0.00 39.29 3.16
5004 5818 0.240411 CAAGAGGACTTTGCTGCTGC 59.760 55.000 8.89 8.89 35.38 5.25
5263 6330 4.576330 AACAGGGGTCTATGGAAAAGAG 57.424 45.455 0.00 0.00 0.00 2.85
5391 6474 9.539194 AATCCTTGAAGAGAATTAAGACCAAAT 57.461 29.630 0.00 0.00 0.00 2.32
5474 6558 8.850156 AGTGAGAGCAAAGTACAAATTGTATTT 58.150 29.630 9.22 8.50 34.81 1.40
5541 6625 2.641305 AGATGAGGTTGCTGAAGATGC 58.359 47.619 0.00 0.00 0.00 3.91
5610 6694 6.966435 ACCAAACATATAGTGCAAAAATGC 57.034 33.333 0.00 0.00 0.00 3.56
5761 6848 7.147497 ACAACATCACCTACATGAATATCTCCA 60.147 37.037 0.00 0.00 30.82 3.86
5785 6977 1.399714 ACAGAGTCACTTGACCGACA 58.600 50.000 5.73 0.00 45.85 4.35
5820 7012 5.471456 AGAAAGTTTTCGAATGAGCTCATGT 59.529 36.000 29.34 18.60 41.92 3.21
5866 7307 5.490139 AACTAGATGTCATCATTTTGCCG 57.510 39.130 15.20 0.00 34.06 5.69
6000 7442 4.860802 ACATCACAGGAAATCCCATACA 57.139 40.909 0.00 0.00 37.41 2.29
6051 7493 8.677148 ACATAATTTACAGCTAGTATGGTTGG 57.323 34.615 6.62 0.00 30.53 3.77
6166 7608 7.556635 AGCTTTTCACCCATAGTATAAAGGTTC 59.443 37.037 0.00 0.00 36.30 3.62
6191 7635 0.110373 GGCTTTCAACACGGCGTAAG 60.110 55.000 14.22 13.83 43.44 2.34
6233 7684 7.153985 CCTTGCCTCATCAAGTATTTCAAAAA 58.846 34.615 3.29 0.00 41.29 1.94
6375 7826 9.553064 CTGAATATGCTCATCTAAACCTTAACT 57.447 33.333 0.00 0.00 0.00 2.24
6377 7828 9.547753 GTCTGAATATGCTCATCTAAACCTTAA 57.452 33.333 0.00 0.00 0.00 1.85
6391 7842 1.233019 GCATGCCGTCTGAATATGCT 58.767 50.000 6.36 0.00 40.58 3.79
6392 7843 0.946528 TGCATGCCGTCTGAATATGC 59.053 50.000 16.68 0.00 43.21 3.14
6400 7851 2.330440 TGATGTTATGCATGCCGTCT 57.670 45.000 16.68 0.00 38.06 4.18
6436 7887 0.179034 CCTTGTATCTGGCCCAGAGC 60.179 60.000 19.98 14.47 44.08 4.09
6437 7888 0.471617 CCCTTGTATCTGGCCCAGAG 59.528 60.000 19.98 4.75 44.08 3.35
6438 7889 0.253160 ACCCTTGTATCTGGCCCAGA 60.253 55.000 17.41 17.41 44.99 3.86
6439 7890 0.107017 CACCCTTGTATCTGGCCCAG 60.107 60.000 3.69 3.69 0.00 4.45
6440 7891 1.998530 CACCCTTGTATCTGGCCCA 59.001 57.895 0.00 0.00 0.00 5.36
6441 7892 1.453928 GCACCCTTGTATCTGGCCC 60.454 63.158 0.00 0.00 0.00 5.80
6442 7893 0.749454 CAGCACCCTTGTATCTGGCC 60.749 60.000 0.00 0.00 0.00 5.36
6457 7908 3.420893 CTGGTAGTTTTGGGATTCAGCA 58.579 45.455 0.00 0.00 0.00 4.41
6460 7911 2.802719 GGCTGGTAGTTTTGGGATTCA 58.197 47.619 0.00 0.00 0.00 2.57
6506 8000 7.832503 AAATGGCAAACTTGTTAATGATAGC 57.167 32.000 0.00 0.00 0.00 2.97
6542 8037 4.256920 CTCTTTCCGATCCACACTTTGAT 58.743 43.478 0.00 0.00 0.00 2.57
6543 8038 3.557054 CCTCTTTCCGATCCACACTTTGA 60.557 47.826 0.00 0.00 0.00 2.69
6549 8044 0.984230 AAGCCTCTTTCCGATCCACA 59.016 50.000 0.00 0.00 0.00 4.17
6606 8108 6.111382 GGAGATGAACAAAGATGAGATCACA 58.889 40.000 0.00 0.00 0.00 3.58
6660 8170 0.891904 GGCTCCCGCTTTGGTGTTTA 60.892 55.000 0.00 0.00 35.15 2.01
6719 8229 1.595093 AAAAATCAAGCGGCCCGAGG 61.595 55.000 7.68 0.00 0.00 4.63
6720 8230 1.064060 CTAAAAATCAAGCGGCCCGAG 59.936 52.381 7.68 0.00 0.00 4.63
6721 8231 1.091537 CTAAAAATCAAGCGGCCCGA 58.908 50.000 7.68 0.00 0.00 5.14
6722 8232 0.525455 GCTAAAAATCAAGCGGCCCG 60.525 55.000 0.00 0.00 0.00 6.13
6723 8233 3.345737 GCTAAAAATCAAGCGGCCC 57.654 52.632 0.00 0.00 0.00 5.80
6728 8238 3.492313 CACTGTCCGCTAAAAATCAAGC 58.508 45.455 0.00 0.00 35.33 4.01
6729 8239 3.492313 GCACTGTCCGCTAAAAATCAAG 58.508 45.455 0.00 0.00 0.00 3.02
6730 8240 2.095969 CGCACTGTCCGCTAAAAATCAA 60.096 45.455 0.00 0.00 0.00 2.57
6731 8241 1.463056 CGCACTGTCCGCTAAAAATCA 59.537 47.619 0.00 0.00 0.00 2.57
6732 8242 1.202031 CCGCACTGTCCGCTAAAAATC 60.202 52.381 0.00 0.00 0.00 2.17
6733 8243 0.802494 CCGCACTGTCCGCTAAAAAT 59.198 50.000 0.00 0.00 0.00 1.82
6734 8244 1.847890 GCCGCACTGTCCGCTAAAAA 61.848 55.000 0.00 0.00 0.00 1.94
6735 8245 2.322081 GCCGCACTGTCCGCTAAAA 61.322 57.895 0.00 0.00 0.00 1.52
6736 8246 2.740826 GCCGCACTGTCCGCTAAA 60.741 61.111 0.00 0.00 0.00 1.85
6737 8247 3.932580 CTGCCGCACTGTCCGCTAA 62.933 63.158 0.00 0.00 0.00 3.09
6738 8248 4.435436 CTGCCGCACTGTCCGCTA 62.435 66.667 0.00 0.00 0.00 4.26
6756 8266 3.451894 GATTGGTTGCTGGCGGGG 61.452 66.667 0.00 0.00 0.00 5.73
6783 8336 6.605849 CAGTTCTGAATGTGAATGTTACTGG 58.394 40.000 0.00 0.00 0.00 4.00
6787 8340 5.997129 TCTGCAGTTCTGAATGTGAATGTTA 59.003 36.000 14.67 0.00 0.00 2.41
6791 8344 4.082895 GCTTCTGCAGTTCTGAATGTGAAT 60.083 41.667 14.67 0.00 39.41 2.57
6848 8401 2.099405 ACTAGAGCTGGCAGAAGAGTC 58.901 52.381 20.86 5.94 0.00 3.36
6947 8500 2.024176 TGAGCTACAGGGTTGGAAGA 57.976 50.000 0.00 0.00 0.00 2.87
6971 8531 4.636249 ACAGTCCTCACTTGATTGAGAAC 58.364 43.478 1.60 0.00 45.19 3.01
7030 8597 3.035363 GGGGTTTCCTTGGACAGAAAAA 58.965 45.455 0.00 0.00 33.98 1.94
7048 8618 5.529581 TGAAAAAGCAGACTTAAAAGGGG 57.470 39.130 0.00 0.00 34.05 4.79
7063 8633 2.259511 GCGGGCAGGCTGAAAAAG 59.740 61.111 20.86 5.13 0.00 2.27
7110 8680 1.884579 GAGATGGCCAAGCACATATGG 59.115 52.381 10.96 0.00 39.80 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.