Multiple sequence alignment - TraesCS5B01G415800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G415800 chr5B 100.000 5440 0 0 1 5440 590005810 590000371 0.000000e+00 10046.0
1 TraesCS5B01G415800 chr5B 92.701 137 10 0 2190 2326 670279228 670279092 1.200000e-46 198.0
2 TraesCS5B01G415800 chr5D 90.502 3348 215 48 1013 4305 481431910 481428611 0.000000e+00 4325.0
3 TraesCS5B01G415800 chr5D 85.068 442 42 10 4810 5240 481428221 481427793 3.890000e-116 429.0
4 TraesCS5B01G415800 chr5D 83.294 425 36 10 4322 4729 481428625 481428219 5.180000e-95 359.0
5 TraesCS5B01G415800 chr5D 95.973 149 6 0 515 663 6233583 6233435 5.440000e-60 243.0
6 TraesCS5B01G415800 chr5D 95.973 149 6 0 515 663 483805111 483804963 5.440000e-60 243.0
7 TraesCS5B01G415800 chr5D 100.000 37 0 0 808 844 52258129 52258093 9.780000e-08 69.4
8 TraesCS5B01G415800 chr5A 90.241 3238 224 34 1129 4305 600444819 600441613 0.000000e+00 4145.0
9 TraesCS5B01G415800 chr5A 85.116 645 60 14 4810 5440 600440922 600440300 1.290000e-175 627.0
10 TraesCS5B01G415800 chr5A 88.337 523 48 8 1 514 600445823 600445305 2.780000e-172 616.0
11 TraesCS5B01G415800 chr5A 87.073 410 30 10 664 1057 600445304 600444902 5.000000e-120 442.0
12 TraesCS5B01G415800 chr5A 85.259 251 26 5 4488 4729 600441168 600440920 1.170000e-61 248.0
13 TraesCS5B01G415800 chr5A 87.629 97 11 1 4322 4418 600441627 600441532 1.600000e-20 111.0
14 TraesCS5B01G415800 chr5A 87.356 87 10 1 4727 4813 700441682 700441597 1.250000e-16 99.0
15 TraesCS5B01G415800 chr6A 82.304 1085 146 23 1289 2360 368498449 368497398 0.000000e+00 898.0
16 TraesCS5B01G415800 chr6A 92.754 138 9 1 2189 2326 594620936 594620800 1.200000e-46 198.0
17 TraesCS5B01G415800 chr7D 91.883 616 48 1 1752 2365 17139864 17139249 0.000000e+00 859.0
18 TraesCS5B01G415800 chr7D 93.798 129 8 0 2198 2326 311116889 311116761 1.550000e-45 195.0
19 TraesCS5B01G415800 chr7D 97.647 85 2 0 1946 2030 494073830 494073914 4.390000e-31 147.0
20 TraesCS5B01G415800 chr3B 93.598 328 20 1 1761 2087 52518664 52518337 6.330000e-134 488.0
21 TraesCS5B01G415800 chr3B 84.941 425 41 11 1288 1708 52519084 52518679 5.070000e-110 409.0
22 TraesCS5B01G415800 chr3B 97.315 149 4 0 515 663 201495668 201495816 2.510000e-63 254.0
23 TraesCS5B01G415800 chr3B 89.888 89 9 0 4727 4815 394954634 394954546 1.240000e-21 115.0
24 TraesCS5B01G415800 chr6B 86.118 425 41 9 1288 1708 432005432 432005842 5.000000e-120 442.0
25 TraesCS5B01G415800 chr6B 93.644 236 13 2 1761 1995 432005857 432006091 8.670000e-93 351.0
26 TraesCS5B01G415800 chr6B 90.066 151 13 2 2178 2326 636124298 636124448 1.550000e-45 195.0
27 TraesCS5B01G415800 chr6B 88.889 90 10 0 4727 4816 615187028 615186939 1.600000e-20 111.0
28 TraesCS5B01G415800 chr6B 100.000 29 0 0 2122 2150 615279950 615279978 3.000000e-03 54.7
29 TraesCS5B01G415800 chr7B 97.315 149 4 0 515 663 63174075 63173927 2.510000e-63 254.0
30 TraesCS5B01G415800 chr4B 96.644 149 5 0 515 663 381290651 381290503 1.170000e-61 248.0
31 TraesCS5B01G415800 chr2B 96.644 149 5 0 515 663 474937516 474937664 1.170000e-61 248.0
32 TraesCS5B01G415800 chr2B 90.728 151 12 2 2178 2326 758951792 758951942 3.320000e-47 200.0
33 TraesCS5B01G415800 chr2B 100.000 37 0 0 808 844 25122612 25122576 9.780000e-08 69.4
34 TraesCS5B01G415800 chr2B 94.737 38 2 0 805 842 264112855 264112892 5.880000e-05 60.2
35 TraesCS5B01G415800 chrUn 95.973 149 6 0 515 663 386523074 386522926 5.440000e-60 243.0
36 TraesCS5B01G415800 chrUn 95.973 149 6 0 515 663 432823700 432823552 5.440000e-60 243.0
37 TraesCS5B01G415800 chrUn 97.619 84 2 0 1947 2030 304779097 304779014 1.580000e-30 145.0
38 TraesCS5B01G415800 chrUn 84.211 95 13 2 4723 4817 382894135 382894043 2.090000e-14 91.6
39 TraesCS5B01G415800 chr1D 95.973 149 6 0 515 663 254479643 254479791 5.440000e-60 243.0
40 TraesCS5B01G415800 chr3A 91.391 151 11 2 2178 2326 570144449 570144599 7.140000e-49 206.0
41 TraesCS5B01G415800 chr3A 97.619 84 2 0 1947 2030 709891423 709891506 1.580000e-30 145.0
42 TraesCS5B01G415800 chr3A 91.011 89 8 0 4727 4815 397141458 397141370 2.660000e-23 121.0
43 TraesCS5B01G415800 chr3A 87.037 54 5 2 790 841 641403171 641403118 5.880000e-05 60.2
44 TraesCS5B01G415800 chr6D 90.000 150 15 0 1724 1873 223690225 223690374 1.550000e-45 195.0
45 TraesCS5B01G415800 chr2A 90.588 85 8 0 4728 4812 170934332 170934416 4.450000e-21 113.0
46 TraesCS5B01G415800 chr1B 87.500 88 9 1 4727 4812 51601898 51601811 3.470000e-17 100.0
47 TraesCS5B01G415800 chr1B 85.106 94 11 3 4724 4815 477403822 477403914 5.800000e-15 93.5
48 TraesCS5B01G415800 chr7A 87.952 83 10 0 4733 4815 652290538 652290456 1.250000e-16 99.0
49 TraesCS5B01G415800 chr4D 97.297 37 1 0 809 845 116790464 116790500 4.550000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G415800 chr5B 590000371 590005810 5439 True 10046.000000 10046 100.000000 1 5440 1 chr5B.!!$R1 5439
1 TraesCS5B01G415800 chr5D 481427793 481431910 4117 True 1704.333333 4325 86.288000 1013 5240 3 chr5D.!!$R4 4227
2 TraesCS5B01G415800 chr5A 600440300 600445823 5523 True 1031.500000 4145 87.275833 1 5440 6 chr5A.!!$R2 5439
3 TraesCS5B01G415800 chr6A 368497398 368498449 1051 True 898.000000 898 82.304000 1289 2360 1 chr6A.!!$R1 1071
4 TraesCS5B01G415800 chr7D 17139249 17139864 615 True 859.000000 859 91.883000 1752 2365 1 chr7D.!!$R1 613
5 TraesCS5B01G415800 chr3B 52518337 52519084 747 True 448.500000 488 89.269500 1288 2087 2 chr3B.!!$R2 799
6 TraesCS5B01G415800 chr6B 432005432 432006091 659 False 396.500000 442 89.881000 1288 1995 2 chr6B.!!$F3 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 544 0.034283 GGGGGCGTGGTTTGGTAATA 60.034 55.0 0.00 0.00 0.00 0.98 F
1892 2024 0.106967 GGTTCTCTGAATCTGGCCCC 60.107 60.0 0.00 0.00 0.00 5.80 F
2124 2265 0.107017 ACTTGTGAGCTGGCTGTTGT 60.107 50.0 0.00 0.00 0.00 3.32 F
3047 3202 0.322008 AGAGCTGTACAAGGGCTTGC 60.322 55.0 9.24 1.54 44.03 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 2571 0.033781 CAGTGCACCACCATTTTGGG 59.966 55.0 14.63 0.00 43.37 4.12 R
3684 3839 0.029433 TCTCCTCGAATGACATCGCG 59.971 55.0 0.00 0.00 42.44 5.87 R
3947 4102 0.443869 GCAGCAACACGTAGATGGTG 59.556 55.0 17.28 17.28 43.47 4.17 R
4913 5395 0.106967 GGCTGAATGGGACTTCCTCC 60.107 60.0 0.00 0.00 38.55 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.821969 CAGGAACAAGGAAGTTGATGGG 59.178 50.000 0.00 0.00 38.60 4.00
25 26 3.073274 ACAAGGAAGTTGATGGGTAGC 57.927 47.619 0.00 0.00 38.60 3.58
27 28 3.274288 CAAGGAAGTTGATGGGTAGCTC 58.726 50.000 0.00 0.00 38.60 4.09
34 35 0.833287 TGATGGGTAGCTCAGAAGGC 59.167 55.000 0.00 0.00 0.00 4.35
50 51 4.098654 CAGAAGGCGAGAGAGGAAAAGATA 59.901 45.833 0.00 0.00 0.00 1.98
51 52 4.340950 AGAAGGCGAGAGAGGAAAAGATAG 59.659 45.833 0.00 0.00 0.00 2.08
86 87 4.573201 TCTTTGAGTGGTAAAAGTTGGACG 59.427 41.667 0.00 0.00 35.38 4.79
89 90 4.062293 TGAGTGGTAAAAGTTGGACGATG 58.938 43.478 0.00 0.00 0.00 3.84
122 123 5.123979 GGTCTTACCTTGGCTTTTGTCTATG 59.876 44.000 0.00 0.00 34.73 2.23
125 126 3.084786 ACCTTGGCTTTTGTCTATGAGC 58.915 45.455 0.00 0.00 0.00 4.26
127 128 4.019321 ACCTTGGCTTTTGTCTATGAGCTA 60.019 41.667 0.00 0.00 35.53 3.32
133 134 5.065346 GGCTTTTGTCTATGAGCTACTTTCC 59.935 44.000 0.00 0.00 35.53 3.13
190 192 4.764679 TTTTCATGTATATGCGCATCCC 57.235 40.909 29.11 16.01 34.21 3.85
191 193 3.415457 TTCATGTATATGCGCATCCCA 57.585 42.857 29.11 21.14 34.21 4.37
192 194 2.698803 TCATGTATATGCGCATCCCAC 58.301 47.619 29.11 21.85 34.21 4.61
194 196 0.761802 TGTATATGCGCATCCCACCA 59.238 50.000 29.11 14.46 0.00 4.17
202 211 0.108396 CGCATCCCACCATCACCATA 59.892 55.000 0.00 0.00 0.00 2.74
205 214 3.233507 GCATCCCACCATCACCATAAAT 58.766 45.455 0.00 0.00 0.00 1.40
206 215 3.006110 GCATCCCACCATCACCATAAATG 59.994 47.826 0.00 0.00 0.00 2.32
234 243 4.034510 GGATGCCAAATAGAGTCTTCAACG 59.965 45.833 0.00 0.00 0.00 4.10
254 263 0.836606 TGAGTGGAAGTTGTGGCTCA 59.163 50.000 0.00 0.00 0.00 4.26
256 265 2.158623 TGAGTGGAAGTTGTGGCTCATT 60.159 45.455 0.00 0.00 0.00 2.57
260 269 1.541588 GGAAGTTGTGGCTCATTGGTC 59.458 52.381 0.00 0.00 0.00 4.02
261 270 2.229792 GAAGTTGTGGCTCATTGGTCA 58.770 47.619 0.00 0.00 0.00 4.02
274 283 3.454447 TCATTGGTCATGGGTACTTCGAT 59.546 43.478 0.00 0.00 33.07 3.59
278 287 3.262151 TGGTCATGGGTACTTCGATTTCA 59.738 43.478 0.00 0.00 0.00 2.69
286 295 3.122445 GGTACTTCGATTTCACGTTGGAC 59.878 47.826 0.00 0.00 34.70 4.02
303 312 2.753043 CGCATGGGGCAAGCTCTT 60.753 61.111 0.89 0.00 45.17 2.85
304 313 1.451927 CGCATGGGGCAAGCTCTTA 60.452 57.895 0.89 0.00 45.17 2.10
310 319 0.393132 GGGGCAAGCTCTTAGGTGAC 60.393 60.000 0.00 0.00 0.00 3.67
316 325 1.562783 AGCTCTTAGGTGACCCAGAC 58.437 55.000 0.00 0.00 0.00 3.51
317 326 1.203187 AGCTCTTAGGTGACCCAGACA 60.203 52.381 0.00 0.00 0.00 3.41
318 327 1.834263 GCTCTTAGGTGACCCAGACAT 59.166 52.381 0.00 0.00 0.00 3.06
319 328 2.419297 GCTCTTAGGTGACCCAGACATG 60.419 54.545 0.00 0.00 0.00 3.21
320 329 1.555075 TCTTAGGTGACCCAGACATGC 59.445 52.381 0.00 0.00 0.00 4.06
321 330 1.556911 CTTAGGTGACCCAGACATGCT 59.443 52.381 0.00 0.00 0.00 3.79
322 331 1.195115 TAGGTGACCCAGACATGCTC 58.805 55.000 0.00 0.00 0.00 4.26
323 332 0.837691 AGGTGACCCAGACATGCTCA 60.838 55.000 0.00 0.00 0.00 4.26
362 371 1.922135 CTTGGCGTTCATTGACCCCG 61.922 60.000 0.00 0.00 0.00 5.73
365 374 2.349755 CGTTCATTGACCCCGGGT 59.650 61.111 21.85 9.59 39.44 5.28
403 412 4.214758 GCTTAGCCGGAGAACTTTGTAAAA 59.785 41.667 5.05 0.00 0.00 1.52
404 413 5.278120 GCTTAGCCGGAGAACTTTGTAAAAA 60.278 40.000 5.05 0.00 0.00 1.94
429 438 2.444421 ACTATTCTTCGACGTCCCAGT 58.556 47.619 10.58 0.14 0.00 4.00
448 458 6.345096 CCAGTTGGGAAAAACATCATAACT 57.655 37.500 0.00 0.00 40.01 2.24
460 470 4.279145 ACATCATAACTAGTCTCGTGGGT 58.721 43.478 0.00 0.00 0.00 4.51
514 524 3.677963 CCTTGCATGGGAGGACTTT 57.322 52.632 10.81 0.00 34.91 2.66
515 525 1.180029 CCTTGCATGGGAGGACTTTG 58.820 55.000 10.81 0.00 34.91 2.77
516 526 1.180029 CTTGCATGGGAGGACTTTGG 58.820 55.000 0.00 0.00 0.00 3.28
517 527 0.251742 TTGCATGGGAGGACTTTGGG 60.252 55.000 0.00 0.00 0.00 4.12
518 528 1.380380 GCATGGGAGGACTTTGGGG 60.380 63.158 0.00 0.00 0.00 4.96
519 529 1.307647 CATGGGAGGACTTTGGGGG 59.692 63.158 0.00 0.00 0.00 5.40
520 530 2.626467 ATGGGAGGACTTTGGGGGC 61.626 63.158 0.00 0.00 0.00 5.80
521 531 4.426313 GGGAGGACTTTGGGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
522 532 3.647771 GGAGGACTTTGGGGGCGT 61.648 66.667 0.00 0.00 0.00 5.68
523 533 2.359975 GAGGACTTTGGGGGCGTG 60.360 66.667 0.00 0.00 0.00 5.34
524 534 3.920093 GAGGACTTTGGGGGCGTGG 62.920 68.421 0.00 0.00 0.00 4.94
525 535 4.280019 GGACTTTGGGGGCGTGGT 62.280 66.667 0.00 0.00 0.00 4.16
526 536 2.203437 GACTTTGGGGGCGTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
527 537 1.830847 GACTTTGGGGGCGTGGTTT 60.831 57.895 0.00 0.00 0.00 3.27
528 538 2.082629 GACTTTGGGGGCGTGGTTTG 62.083 60.000 0.00 0.00 0.00 2.93
529 539 2.840102 TTTGGGGGCGTGGTTTGG 60.840 61.111 0.00 0.00 0.00 3.28
530 540 3.680920 TTTGGGGGCGTGGTTTGGT 62.681 57.895 0.00 0.00 0.00 3.67
531 541 2.294170 TTTGGGGGCGTGGTTTGGTA 62.294 55.000 0.00 0.00 0.00 3.25
532 542 2.115695 GGGGGCGTGGTTTGGTAA 59.884 61.111 0.00 0.00 0.00 2.85
533 543 1.304630 GGGGGCGTGGTTTGGTAAT 60.305 57.895 0.00 0.00 0.00 1.89
534 544 0.034283 GGGGGCGTGGTTTGGTAATA 60.034 55.000 0.00 0.00 0.00 0.98
535 545 1.097232 GGGGCGTGGTTTGGTAATAC 58.903 55.000 0.00 0.00 0.00 1.89
536 546 0.728542 GGGCGTGGTTTGGTAATACG 59.271 55.000 0.00 0.00 37.77 3.06
539 549 1.440708 CGTGGTTTGGTAATACGCCA 58.559 50.000 0.00 0.00 0.00 5.69
540 550 1.805345 CGTGGTTTGGTAATACGCCAA 59.195 47.619 0.00 0.00 43.51 4.52
541 551 2.420722 CGTGGTTTGGTAATACGCCAAT 59.579 45.455 0.00 0.00 44.44 3.16
542 552 3.119779 CGTGGTTTGGTAATACGCCAATT 60.120 43.478 0.00 0.00 44.44 2.32
543 553 4.616373 CGTGGTTTGGTAATACGCCAATTT 60.616 41.667 0.00 0.00 44.44 1.82
544 554 4.623595 GTGGTTTGGTAATACGCCAATTTG 59.376 41.667 0.00 0.00 44.44 2.32
545 555 4.177783 GGTTTGGTAATACGCCAATTTGG 58.822 43.478 11.27 11.27 44.44 3.28
578 588 9.487790 TTTGTGGATAAAATGATTTCTTTCACC 57.512 29.630 8.24 0.00 0.00 4.02
579 589 8.421249 TGTGGATAAAATGATTTCTTTCACCT 57.579 30.769 8.24 0.00 0.00 4.00
580 590 8.522830 TGTGGATAAAATGATTTCTTTCACCTC 58.477 33.333 8.24 0.00 0.00 3.85
581 591 8.522830 GTGGATAAAATGATTTCTTTCACCTCA 58.477 33.333 0.00 0.00 0.00 3.86
582 592 8.522830 TGGATAAAATGATTTCTTTCACCTCAC 58.477 33.333 0.00 0.00 0.00 3.51
583 593 8.522830 GGATAAAATGATTTCTTTCACCTCACA 58.477 33.333 0.00 0.00 0.00 3.58
584 594 9.912634 GATAAAATGATTTCTTTCACCTCACAA 57.087 29.630 0.00 0.00 0.00 3.33
586 596 8.822652 AAAATGATTTCTTTCACCTCACAATC 57.177 30.769 0.00 0.00 0.00 2.67
587 597 5.964958 TGATTTCTTTCACCTCACAATCC 57.035 39.130 0.00 0.00 0.00 3.01
588 598 4.766891 TGATTTCTTTCACCTCACAATCCC 59.233 41.667 0.00 0.00 0.00 3.85
589 599 3.874383 TTCTTTCACCTCACAATCCCA 57.126 42.857 0.00 0.00 0.00 4.37
590 600 3.874383 TCTTTCACCTCACAATCCCAA 57.126 42.857 0.00 0.00 0.00 4.12
591 601 4.177537 TCTTTCACCTCACAATCCCAAA 57.822 40.909 0.00 0.00 0.00 3.28
592 602 4.739793 TCTTTCACCTCACAATCCCAAAT 58.260 39.130 0.00 0.00 0.00 2.32
593 603 5.886609 TCTTTCACCTCACAATCCCAAATA 58.113 37.500 0.00 0.00 0.00 1.40
594 604 6.310941 TCTTTCACCTCACAATCCCAAATAA 58.689 36.000 0.00 0.00 0.00 1.40
595 605 6.953520 TCTTTCACCTCACAATCCCAAATAAT 59.046 34.615 0.00 0.00 0.00 1.28
596 606 7.454380 TCTTTCACCTCACAATCCCAAATAATT 59.546 33.333 0.00 0.00 0.00 1.40
597 607 6.773976 TCACCTCACAATCCCAAATAATTC 57.226 37.500 0.00 0.00 0.00 2.17
598 608 5.356751 TCACCTCACAATCCCAAATAATTCG 59.643 40.000 0.00 0.00 0.00 3.34
599 609 4.097892 ACCTCACAATCCCAAATAATTCGC 59.902 41.667 0.00 0.00 0.00 4.70
600 610 4.339247 CCTCACAATCCCAAATAATTCGCT 59.661 41.667 0.00 0.00 0.00 4.93
601 611 5.163519 CCTCACAATCCCAAATAATTCGCTT 60.164 40.000 0.00 0.00 0.00 4.68
602 612 6.039270 CCTCACAATCCCAAATAATTCGCTTA 59.961 38.462 0.00 0.00 0.00 3.09
603 613 7.026631 TCACAATCCCAAATAATTCGCTTAG 57.973 36.000 0.00 0.00 0.00 2.18
604 614 6.039270 TCACAATCCCAAATAATTCGCTTAGG 59.961 38.462 0.00 0.00 0.00 2.69
605 615 6.039270 CACAATCCCAAATAATTCGCTTAGGA 59.961 38.462 0.00 0.00 0.00 2.94
606 616 6.263168 ACAATCCCAAATAATTCGCTTAGGAG 59.737 38.462 0.00 0.00 0.00 3.69
607 617 5.367945 TCCCAAATAATTCGCTTAGGAGT 57.632 39.130 0.00 0.00 0.00 3.85
608 618 5.365619 TCCCAAATAATTCGCTTAGGAGTC 58.634 41.667 0.00 0.00 0.00 3.36
609 619 5.104693 TCCCAAATAATTCGCTTAGGAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
610 620 5.237344 CCCAAATAATTCGCTTAGGAGTCAG 59.763 44.000 0.00 0.00 0.00 3.51
611 621 5.817816 CCAAATAATTCGCTTAGGAGTCAGT 59.182 40.000 0.00 0.00 0.00 3.41
612 622 6.984474 CCAAATAATTCGCTTAGGAGTCAGTA 59.016 38.462 0.00 0.00 0.00 2.74
613 623 7.042658 CCAAATAATTCGCTTAGGAGTCAGTAC 60.043 40.741 0.00 0.00 0.00 2.73
614 624 6.710597 ATAATTCGCTTAGGAGTCAGTACA 57.289 37.500 0.00 0.00 0.00 2.90
615 625 5.599999 AATTCGCTTAGGAGTCAGTACAT 57.400 39.130 0.00 0.00 0.00 2.29
616 626 6.710597 AATTCGCTTAGGAGTCAGTACATA 57.289 37.500 0.00 0.00 0.00 2.29
617 627 6.710597 ATTCGCTTAGGAGTCAGTACATAA 57.289 37.500 0.00 0.00 0.00 1.90
618 628 6.519679 TTCGCTTAGGAGTCAGTACATAAA 57.480 37.500 0.00 0.00 0.00 1.40
619 629 6.132791 TCGCTTAGGAGTCAGTACATAAAG 57.867 41.667 0.00 0.00 0.00 1.85
620 630 5.884232 TCGCTTAGGAGTCAGTACATAAAGA 59.116 40.000 0.00 0.00 0.00 2.52
621 631 6.546403 TCGCTTAGGAGTCAGTACATAAAGAT 59.454 38.462 0.00 0.00 0.00 2.40
622 632 7.068348 TCGCTTAGGAGTCAGTACATAAAGATT 59.932 37.037 0.00 0.00 0.00 2.40
623 633 7.707035 CGCTTAGGAGTCAGTACATAAAGATTT 59.293 37.037 0.00 0.00 0.00 2.17
641 651 8.831715 AAAGATTTAATTTCATTTCTGCGGTT 57.168 26.923 0.00 0.00 0.00 4.44
642 652 8.831715 AAGATTTAATTTCATTTCTGCGGTTT 57.168 26.923 0.00 0.00 0.00 3.27
643 653 8.243289 AGATTTAATTTCATTTCTGCGGTTTG 57.757 30.769 0.00 0.00 0.00 2.93
644 654 7.872483 AGATTTAATTTCATTTCTGCGGTTTGT 59.128 29.630 0.00 0.00 0.00 2.83
645 655 7.778470 TTTAATTTCATTTCTGCGGTTTGTT 57.222 28.000 0.00 0.00 0.00 2.83
646 656 5.905480 AATTTCATTTCTGCGGTTTGTTC 57.095 34.783 0.00 0.00 0.00 3.18
647 657 4.647424 TTTCATTTCTGCGGTTTGTTCT 57.353 36.364 0.00 0.00 0.00 3.01
648 658 3.896648 TCATTTCTGCGGTTTGTTCTC 57.103 42.857 0.00 0.00 0.00 2.87
649 659 2.552315 TCATTTCTGCGGTTTGTTCTCC 59.448 45.455 0.00 0.00 0.00 3.71
650 660 2.341846 TTTCTGCGGTTTGTTCTCCT 57.658 45.000 0.00 0.00 0.00 3.69
651 661 1.878953 TTCTGCGGTTTGTTCTCCTC 58.121 50.000 0.00 0.00 0.00 3.71
652 662 1.048601 TCTGCGGTTTGTTCTCCTCT 58.951 50.000 0.00 0.00 0.00 3.69
653 663 1.416401 TCTGCGGTTTGTTCTCCTCTT 59.584 47.619 0.00 0.00 0.00 2.85
654 664 1.801178 CTGCGGTTTGTTCTCCTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
655 665 1.140052 TGCGGTTTGTTCTCCTCTTCA 59.860 47.619 0.00 0.00 0.00 3.02
656 666 1.531578 GCGGTTTGTTCTCCTCTTCAC 59.468 52.381 0.00 0.00 0.00 3.18
657 667 2.833794 CGGTTTGTTCTCCTCTTCACA 58.166 47.619 0.00 0.00 0.00 3.58
658 668 2.802816 CGGTTTGTTCTCCTCTTCACAG 59.197 50.000 0.00 0.00 0.00 3.66
659 669 3.142174 GGTTTGTTCTCCTCTTCACAGG 58.858 50.000 0.00 0.00 34.40 4.00
660 670 3.433740 GGTTTGTTCTCCTCTTCACAGGT 60.434 47.826 0.00 0.00 34.76 4.00
661 671 4.200092 GTTTGTTCTCCTCTTCACAGGTT 58.800 43.478 0.00 0.00 34.76 3.50
662 672 5.365619 GTTTGTTCTCCTCTTCACAGGTTA 58.634 41.667 0.00 0.00 34.76 2.85
686 696 3.444742 ACACCGTCAACGACCTATGATTA 59.555 43.478 3.71 0.00 43.02 1.75
694 704 6.929049 GTCAACGACCTATGATTATGAATCCA 59.071 38.462 0.00 0.00 37.09 3.41
701 711 7.243824 ACCTATGATTATGAATCCAATTGCCT 58.756 34.615 0.00 0.00 37.09 4.75
759 769 9.206690 ACTCTCTCTTGAAATGACCATCTATAA 57.793 33.333 0.00 0.00 0.00 0.98
772 782 2.700722 TCTATAACGTGGGCATTGCA 57.299 45.000 11.39 0.00 0.00 4.08
781 791 0.251474 TGGGCATTGCAGAGAAAGCT 60.251 50.000 11.39 0.00 0.00 3.74
783 793 1.674962 GGGCATTGCAGAGAAAGCTAG 59.325 52.381 11.39 0.00 0.00 3.42
793 803 6.381801 TGCAGAGAAAGCTAGCAAAATTTAC 58.618 36.000 18.83 6.61 33.81 2.01
846 856 5.997384 TCTTTTCAGAGGGAGTACTAACC 57.003 43.478 7.80 7.80 0.00 2.85
847 857 4.461781 TCTTTTCAGAGGGAGTACTAACCG 59.538 45.833 9.71 0.00 0.00 4.44
857 867 1.076118 TACTAACCGCCATCCCCGA 60.076 57.895 0.00 0.00 0.00 5.14
865 875 2.372074 GCCATCCCCGACTAACCCA 61.372 63.158 0.00 0.00 0.00 4.51
866 876 1.917336 GCCATCCCCGACTAACCCAA 61.917 60.000 0.00 0.00 0.00 4.12
867 877 0.180406 CCATCCCCGACTAACCCAAG 59.820 60.000 0.00 0.00 0.00 3.61
868 878 1.200519 CATCCCCGACTAACCCAAGA 58.799 55.000 0.00 0.00 0.00 3.02
870 880 1.272807 TCCCCGACTAACCCAAGAAG 58.727 55.000 0.00 0.00 0.00 2.85
871 881 0.392595 CCCCGACTAACCCAAGAAGC 60.393 60.000 0.00 0.00 0.00 3.86
872 882 0.323629 CCCGACTAACCCAAGAAGCA 59.676 55.000 0.00 0.00 0.00 3.91
873 883 1.439679 CCGACTAACCCAAGAAGCAC 58.560 55.000 0.00 0.00 0.00 4.40
874 884 1.068474 CGACTAACCCAAGAAGCACG 58.932 55.000 0.00 0.00 0.00 5.34
875 885 0.796927 GACTAACCCAAGAAGCACGC 59.203 55.000 0.00 0.00 0.00 5.34
894 909 1.860399 GCGCGATGTGATAGAACGAGT 60.860 52.381 12.10 0.00 0.00 4.18
897 912 4.668431 GCGCGATGTGATAGAACGAGTATA 60.668 45.833 12.10 0.00 0.00 1.47
899 914 5.849604 CGCGATGTGATAGAACGAGTATAAA 59.150 40.000 0.00 0.00 0.00 1.40
901 916 7.460249 CGCGATGTGATAGAACGAGTATAAATG 60.460 40.741 0.00 0.00 0.00 2.32
930 952 8.617290 AAATAGTGAGGAATGTCGTTTTTACT 57.383 30.769 0.00 0.00 0.00 2.24
983 1008 7.231925 CCTACCCCATAAATGTAATTAACACCC 59.768 40.741 0.00 0.00 42.09 4.61
984 1009 5.595133 ACCCCATAAATGTAATTAACACCCG 59.405 40.000 0.00 0.00 42.09 5.28
985 1010 5.595133 CCCCATAAATGTAATTAACACCCGT 59.405 40.000 0.00 0.00 42.09 5.28
986 1011 6.771749 CCCCATAAATGTAATTAACACCCGTA 59.228 38.462 0.00 0.00 42.09 4.02
1020 1045 2.243221 CAGAATCACCCCCAAATCTCCT 59.757 50.000 0.00 0.00 0.00 3.69
1057 1082 1.599797 AAAACAGGAAGGGGACGCG 60.600 57.895 3.53 3.53 0.00 6.01
1061 1086 1.741770 CAGGAAGGGGACGCGAAAG 60.742 63.158 15.93 0.00 0.00 2.62
1101 1160 3.474570 GCACGGGAGCAGAGGGAT 61.475 66.667 0.00 0.00 0.00 3.85
1105 1164 3.174265 GGGAGCAGAGGGATGGGG 61.174 72.222 0.00 0.00 0.00 4.96
1106 1165 3.174265 GGAGCAGAGGGATGGGGG 61.174 72.222 0.00 0.00 0.00 5.40
1107 1166 3.883549 GAGCAGAGGGATGGGGGC 61.884 72.222 0.00 0.00 0.00 5.80
1312 1422 4.090057 GCTTCAACACTCGGCGCC 62.090 66.667 19.07 19.07 0.00 6.53
1437 1549 2.124693 CAGCTCGTCTCCTCCTCCC 61.125 68.421 0.00 0.00 0.00 4.30
1461 1576 0.397114 CCCCAGCCCCAAGGTATTTC 60.397 60.000 0.00 0.00 34.57 2.17
1575 1695 6.783759 GCGATTGGTTATTTTTGTTCGTTTTC 59.216 34.615 0.00 0.00 0.00 2.29
1663 1789 2.357034 GTTCCTGCGCGAAGGTCA 60.357 61.111 32.20 17.83 38.58 4.02
1722 1853 0.326264 AGCCGTTCAATCCTCTGCTT 59.674 50.000 0.00 0.00 0.00 3.91
1736 1867 0.170561 CTGCTTGGTTCTGATGCTGC 59.829 55.000 0.00 0.00 0.00 5.25
1780 1911 1.155424 TTTGTGCCGTCGGTGAAGAC 61.155 55.000 13.94 3.17 37.76 3.01
1892 2024 0.106967 GGTTCTCTGAATCTGGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
1930 2062 3.724508 TGCTAGTCTATTCTGAGCTGC 57.275 47.619 0.00 0.00 34.19 5.25
1949 2081 0.524862 CATCTTGCCACTTGAGTGCC 59.475 55.000 5.62 0.00 44.34 5.01
1962 2094 1.879380 TGAGTGCCGAATTTTGTCTGG 59.121 47.619 0.00 0.00 0.00 3.86
2037 2178 9.932699 GATTATGTCTTTATATGCATGATGAGC 57.067 33.333 10.16 0.00 0.00 4.26
2096 2237 1.135689 GCACTAACTGCACGGAATTGG 60.136 52.381 0.00 0.00 46.29 3.16
2124 2265 0.107017 ACTTGTGAGCTGGCTGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
2148 2289 5.221880 TCATTTGTTTGCTTGCACTGATAC 58.778 37.500 0.00 0.00 0.00 2.24
2154 2295 1.901833 TGCTTGCACTGATACAGGAGA 59.098 47.619 0.00 0.00 35.51 3.71
2155 2296 2.275318 GCTTGCACTGATACAGGAGAC 58.725 52.381 0.00 0.00 35.51 3.36
2158 2299 1.550524 TGCACTGATACAGGAGACCAC 59.449 52.381 0.00 0.00 35.51 4.16
2171 2312 5.127356 ACAGGAGACCACTGTATAAAGCTAC 59.873 44.000 0.00 0.00 46.62 3.58
2173 2314 5.361285 AGGAGACCACTGTATAAAGCTACTG 59.639 44.000 0.00 0.00 0.00 2.74
2174 2315 5.012328 AGACCACTGTATAAAGCTACTGC 57.988 43.478 0.00 0.00 40.05 4.40
2176 2317 5.046591 AGACCACTGTATAAAGCTACTGCAA 60.047 40.000 0.00 0.00 42.74 4.08
2183 2324 6.697395 TGTATAAAGCTACTGCAACTTCTGA 58.303 36.000 0.00 0.00 42.74 3.27
2187 2330 4.013267 AGCTACTGCAACTTCTGAATGT 57.987 40.909 0.00 0.00 42.74 2.71
2194 2337 6.441274 ACTGCAACTTCTGAATGTGTTTATG 58.559 36.000 0.00 0.00 0.00 1.90
2196 2339 6.437928 TGCAACTTCTGAATGTGTTTATGAC 58.562 36.000 0.00 0.00 0.00 3.06
2202 2345 6.223138 TCTGAATGTGTTTATGACGACAAC 57.777 37.500 0.00 0.00 0.00 3.32
2232 2377 5.266242 GTGGCTTGTTCTTTTATATCTGCG 58.734 41.667 0.00 0.00 0.00 5.18
2256 2401 6.363473 GTTGCTGTTTGTAGCTAACTGTTAG 58.637 40.000 20.54 20.54 44.01 2.34
2318 2463 3.759618 TGCTCATGCATGACTCATTCAAA 59.240 39.130 25.42 1.17 45.31 2.69
2326 2471 4.855388 GCATGACTCATTCAAATGACACAC 59.145 41.667 0.00 0.00 40.32 3.82
2362 2514 7.463431 TCCACATGTTAATTACCCCCATATAC 58.537 38.462 0.00 0.00 0.00 1.47
2366 2518 7.446013 ACATGTTAATTACCCCCATATACGTTG 59.554 37.037 0.00 0.00 0.00 4.10
2367 2519 6.897986 TGTTAATTACCCCCATATACGTTGT 58.102 36.000 0.00 0.00 0.00 3.32
2368 2520 6.766944 TGTTAATTACCCCCATATACGTTGTG 59.233 38.462 0.00 0.00 0.00 3.33
2369 2521 5.633655 AATTACCCCCATATACGTTGTGA 57.366 39.130 0.00 0.00 0.00 3.58
2370 2522 4.675976 TTACCCCCATATACGTTGTGAG 57.324 45.455 0.00 0.00 0.00 3.51
2371 2523 1.140252 ACCCCCATATACGTTGTGAGC 59.860 52.381 0.00 0.00 0.00 4.26
2372 2524 1.140052 CCCCCATATACGTTGTGAGCA 59.860 52.381 0.00 0.00 0.00 4.26
2373 2525 2.420827 CCCCCATATACGTTGTGAGCAA 60.421 50.000 0.00 0.00 0.00 3.91
2396 2548 3.872696 TCAGCAACAGACTGACTTTCAA 58.127 40.909 10.08 0.00 39.21 2.69
2397 2549 3.623060 TCAGCAACAGACTGACTTTCAAC 59.377 43.478 10.08 0.00 39.21 3.18
2398 2550 3.624861 CAGCAACAGACTGACTTTCAACT 59.375 43.478 10.08 0.00 37.32 3.16
2399 2551 3.624861 AGCAACAGACTGACTTTCAACTG 59.375 43.478 10.08 0.00 37.11 3.16
2402 2554 5.502544 GCAACAGACTGACTTTCAACTGTAC 60.503 44.000 10.08 0.00 40.47 2.90
2403 2555 4.694339 ACAGACTGACTTTCAACTGTACC 58.306 43.478 10.08 0.00 39.99 3.34
2419 2571 1.548719 GTACCAACAGGCCAATTTCCC 59.451 52.381 5.01 0.00 0.00 3.97
2421 2573 1.552799 CCAACAGGCCAATTTCCCCC 61.553 60.000 5.01 0.00 0.00 5.40
2429 2581 1.354031 GCCAATTTCCCCCAAAATGGT 59.646 47.619 3.69 0.00 44.33 3.55
2460 2612 4.824537 TGTCGGAAACTCCAAATGAAATCA 59.175 37.500 0.00 0.00 35.91 2.57
2462 2614 6.657117 TGTCGGAAACTCCAAATGAAATCATA 59.343 34.615 0.00 0.00 35.91 2.15
2467 2619 9.710900 GGAAACTCCAAATGAAATCATAAAAGT 57.289 29.630 0.00 0.00 36.28 2.66
2496 2648 1.806542 GCACGGATTCAGCTTTTCAGA 59.193 47.619 0.00 0.00 0.00 3.27
2497 2649 2.159599 GCACGGATTCAGCTTTTCAGAG 60.160 50.000 0.00 0.00 0.00 3.35
2500 2652 2.159599 CGGATTCAGCTTTTCAGAGTGC 60.160 50.000 0.00 0.00 0.00 4.40
2521 2673 3.425892 GCAACTCATTCAGCACTGCTAAG 60.426 47.826 2.39 0.00 36.40 2.18
2545 2697 5.754890 GTGCCTTGTCTGAAAACATGAATTT 59.245 36.000 0.00 0.00 0.00 1.82
2597 2749 2.465813 ACTCCTTCAGGGTCTCATCAG 58.534 52.381 0.00 0.00 36.25 2.90
2651 2803 1.339610 GACCTCGTGCTATCTGCTGAT 59.660 52.381 11.14 11.14 43.37 2.90
2792 2947 2.572191 ATGGTTGCGATGCATCAAAG 57.428 45.000 25.70 11.24 38.76 2.77
2836 2991 2.458951 CAAGAGCATAGACTCTGACGC 58.541 52.381 0.00 0.00 46.38 5.19
2864 3019 2.220953 TGAGCCTGTGGTCAACTGT 58.779 52.632 0.00 0.00 45.49 3.55
2953 3108 4.803452 TCCAAGTCTTCACCCTTTTCAAT 58.197 39.130 0.00 0.00 0.00 2.57
2974 3129 6.040729 TCAATTCCTTTGAAAGTGAATGCTGA 59.959 34.615 16.73 14.95 41.38 4.26
3003 3158 6.668283 ACATACTCCAGTTAACACTCAGGTAT 59.332 38.462 8.61 5.92 0.00 2.73
3006 3161 6.491383 ACTCCAGTTAACACTCAGGTATCTA 58.509 40.000 8.61 0.00 0.00 1.98
3031 3186 3.717707 TGGAAGAGTTGACAAACGAGAG 58.282 45.455 0.00 0.00 41.45 3.20
3038 3193 3.120792 GTTGACAAACGAGAGCTGTACA 58.879 45.455 0.00 0.00 31.40 2.90
3042 3197 2.069273 CAAACGAGAGCTGTACAAGGG 58.931 52.381 0.00 0.00 0.00 3.95
3047 3202 0.322008 AGAGCTGTACAAGGGCTTGC 60.322 55.000 9.24 1.54 44.03 4.01
3060 3215 1.405105 GGGCTTGCTCGCATAATTTGA 59.595 47.619 0.00 0.00 0.00 2.69
3067 3222 2.778386 GCTCGCATAATTTGAACGAAGC 59.222 45.455 0.00 0.00 31.60 3.86
3353 3508 6.959639 ACAACAAATAGTGGTTCAGATGTT 57.040 33.333 0.00 0.00 26.39 2.71
3395 3550 1.214175 TGGTTGAAGCCTCCAAGTTCA 59.786 47.619 0.00 0.00 0.00 3.18
3545 3700 4.045334 ACTCCTAAATGGTGGGATGGAAAA 59.955 41.667 0.00 0.00 37.07 2.29
3684 3839 3.010420 GGATCAGAAGGTTAGTTGGCAC 58.990 50.000 0.00 0.00 0.00 5.01
3764 3919 7.287061 TCTCAAAGGTTCAGTATTTTCTTCCA 58.713 34.615 0.00 0.00 0.00 3.53
3770 3925 8.477419 AGGTTCAGTATTTTCTTCCATTTCAA 57.523 30.769 0.00 0.00 0.00 2.69
3772 3927 9.541143 GGTTCAGTATTTTCTTCCATTTCAAAA 57.459 29.630 0.00 0.00 0.00 2.44
3781 3936 9.447157 TTTTCTTCCATTTCAAAACAAATCACT 57.553 25.926 0.00 0.00 0.00 3.41
3795 3950 5.189180 ACAAATCACTCTTTGATCTAGCCC 58.811 41.667 3.74 0.00 44.86 5.19
3800 3955 4.041567 TCACTCTTTGATCTAGCCCAACAA 59.958 41.667 0.00 0.00 0.00 2.83
3801 3956 4.946157 CACTCTTTGATCTAGCCCAACAAT 59.054 41.667 0.00 0.00 0.00 2.71
3824 3979 9.519905 CAATTTTTAAAATCTTTCGAGTGCATG 57.480 29.630 3.23 0.00 0.00 4.06
3855 4010 6.947733 TCCTTCTTTCAATGGTGTAATGTGAT 59.052 34.615 0.00 0.00 0.00 3.06
3928 4083 2.808919 TCAGGTGTAGAAGGTGAGGAG 58.191 52.381 0.00 0.00 0.00 3.69
3947 4102 3.552684 GGAGAGTGATACTGCTGCATCTC 60.553 52.174 15.33 15.33 32.94 2.75
3986 4141 5.375417 TGCTTTTACATGATGTCTTGGTG 57.625 39.130 0.00 0.00 0.00 4.17
3991 4146 0.448990 CATGATGTCTTGGTGTGCGG 59.551 55.000 0.00 0.00 0.00 5.69
4099 4254 5.242838 CCTCCAGTATGTAGCTTCTAGAAGG 59.757 48.000 29.22 12.89 38.80 3.46
4116 4271 0.686769 AGGGGCCGTTCTATCGACTT 60.687 55.000 0.00 0.00 0.00 3.01
4153 4308 5.596845 GAGTAATGCTCCTAGTTCCAAGAG 58.403 45.833 0.00 0.00 38.27 2.85
4236 4392 4.737353 GAACGTTATGTTCGGGTCTTTT 57.263 40.909 0.00 0.00 46.85 2.27
4241 4397 4.024725 CGTTATGTTCGGGTCTTTTTGTGA 60.025 41.667 0.00 0.00 0.00 3.58
4262 4418 8.475331 TGTGATACTTTCTTCTATTTCGTTCC 57.525 34.615 0.00 0.00 0.00 3.62
4292 4448 6.106673 TGCAGTTTTAGTTCCTGATACTAGC 58.893 40.000 0.00 0.00 30.36 3.42
4305 4461 6.668283 TCCTGATACTAGCTGTCTTACCTTTT 59.332 38.462 0.00 0.00 0.00 2.27
4306 4462 7.837689 TCCTGATACTAGCTGTCTTACCTTTTA 59.162 37.037 0.00 0.00 0.00 1.52
4307 4463 8.643324 CCTGATACTAGCTGTCTTACCTTTTAT 58.357 37.037 0.00 0.00 0.00 1.40
4329 4485 3.518634 TTTTTGCGAGAAAGTTGCCTT 57.481 38.095 0.00 0.00 34.08 4.35
4330 4486 4.640789 TTTTTGCGAGAAAGTTGCCTTA 57.359 36.364 0.00 0.00 34.08 2.69
4331 4487 3.619233 TTTGCGAGAAAGTTGCCTTAC 57.381 42.857 0.00 0.00 34.08 2.34
4332 4488 1.519408 TGCGAGAAAGTTGCCTTACC 58.481 50.000 0.00 0.00 34.08 2.85
4333 4489 1.071699 TGCGAGAAAGTTGCCTTACCT 59.928 47.619 0.00 0.00 34.08 3.08
4334 4490 2.152016 GCGAGAAAGTTGCCTTACCTT 58.848 47.619 0.00 0.00 0.00 3.50
4335 4491 2.552743 GCGAGAAAGTTGCCTTACCTTT 59.447 45.455 0.00 0.00 0.00 3.11
4365 4521 3.058016 ACGATTGCCACAACAGAGAAATG 60.058 43.478 0.00 0.00 0.00 2.32
4371 4527 5.748402 TGCCACAACAGAGAAATGATCTAT 58.252 37.500 0.00 0.00 38.96 1.98
4372 4528 6.182627 TGCCACAACAGAGAAATGATCTATT 58.817 36.000 0.00 0.00 38.96 1.73
4373 4529 6.317140 TGCCACAACAGAGAAATGATCTATTC 59.683 38.462 0.00 0.00 38.96 1.75
4374 4530 6.238593 GCCACAACAGAGAAATGATCTATTCC 60.239 42.308 7.24 1.55 38.96 3.01
4381 4537 9.703892 ACAGAGAAATGATCTATTCCTATTTCG 57.296 33.333 0.00 0.00 40.70 3.46
4414 4570 7.633772 GCAGAGAAATTATCACTCCTTCCTGTA 60.634 40.741 0.00 0.00 0.00 2.74
4422 4887 4.942944 TCACTCCTTCCTGTATACCTTGA 58.057 43.478 0.00 0.00 0.00 3.02
4454 4920 9.110617 GATGCGAATAAATCTGATGTATTGTTG 57.889 33.333 16.00 8.17 0.00 3.33
4502 4969 9.601217 TCCTTAAGCTATTGTAATCACTCTTTC 57.399 33.333 0.00 0.00 0.00 2.62
4514 4981 5.954296 ATCACTCTTTCATGGTGTCTTTG 57.046 39.130 0.00 0.00 33.30 2.77
4546 5013 6.012745 AGAATTTGCCTTTACATCCTTGTCT 58.987 36.000 0.00 0.00 37.28 3.41
4548 5015 5.705609 TTTGCCTTTACATCCTTGTCTTC 57.294 39.130 0.00 0.00 37.28 2.87
4560 5027 3.005472 TCCTTGTCTTCGACGAATTCTGT 59.995 43.478 11.30 3.32 34.95 3.41
4569 5036 3.991773 TCGACGAATTCTGTAGGTTTTGG 59.008 43.478 3.52 0.00 0.00 3.28
4607 5074 1.325476 AATGCTGCTTTGCTAGGCCC 61.325 55.000 0.00 0.00 0.00 5.80
4617 5084 3.771577 TTGCTAGGCCCTTCTATTAGC 57.228 47.619 10.23 10.23 37.75 3.09
4620 5087 3.716872 TGCTAGGCCCTTCTATTAGCTTT 59.283 43.478 16.27 0.00 38.02 3.51
4621 5088 4.068599 GCTAGGCCCTTCTATTAGCTTTG 58.931 47.826 9.95 0.00 35.15 2.77
4626 5093 4.100035 GGCCCTTCTATTAGCTTTGCATTT 59.900 41.667 0.00 0.00 0.00 2.32
4638 5114 3.665060 GCTTTGCATTTGGAACGCAATTC 60.665 43.478 8.12 0.00 44.49 2.17
4642 5118 5.070770 TGCATTTGGAACGCAATTCTATT 57.929 34.783 0.00 0.00 37.48 1.73
4650 5126 3.004752 ACGCAATTCTATTGCCTCCTT 57.995 42.857 16.27 0.00 42.10 3.36
4652 5128 2.684881 CGCAATTCTATTGCCTCCTTGT 59.315 45.455 16.27 0.00 42.10 3.16
4653 5129 3.242870 CGCAATTCTATTGCCTCCTTGTC 60.243 47.826 16.27 0.00 42.10 3.18
4659 5141 2.957402 ATTGCCTCCTTGTCAGACAA 57.043 45.000 15.39 15.39 36.54 3.18
4667 5149 2.023673 CCTTGTCAGACAACCTGCAAA 58.976 47.619 12.24 0.00 42.62 3.68
4729 5211 8.682710 TGATGAATATTTAAGCCAAACAGGTAC 58.317 33.333 0.00 0.00 40.61 3.34
4731 5213 8.276252 TGAATATTTAAGCCAAACAGGTACTC 57.724 34.615 0.00 0.00 40.61 2.59
4732 5214 7.338449 TGAATATTTAAGCCAAACAGGTACTCC 59.662 37.037 0.00 0.00 40.61 3.85
4733 5215 3.428413 TTAAGCCAAACAGGTACTCCC 57.572 47.619 0.00 0.00 40.61 4.30
4735 5217 0.984995 AGCCAAACAGGTACTCCCTC 59.015 55.000 0.00 0.00 43.86 4.30
4736 5218 0.035343 GCCAAACAGGTACTCCCTCC 60.035 60.000 0.00 0.00 43.86 4.30
4738 5220 0.974383 CAAACAGGTACTCCCTCCGT 59.026 55.000 0.00 0.00 43.86 4.69
4739 5221 1.067071 CAAACAGGTACTCCCTCCGTC 60.067 57.143 0.00 0.00 43.86 4.79
4740 5222 0.614134 AACAGGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 43.86 4.79
4741 5223 1.757340 CAGGTACTCCCTCCGTCCC 60.757 68.421 0.00 0.00 43.86 4.46
4742 5224 2.243888 AGGTACTCCCTCCGTCCCA 61.244 63.158 0.00 0.00 40.71 4.37
4743 5225 2.056815 GGTACTCCCTCCGTCCCAC 61.057 68.421 0.00 0.00 0.00 4.61
4744 5226 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
4745 5227 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
4746 5228 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
4747 5229 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
4748 5230 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
4749 5231 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
4750 5232 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
4751 5233 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
4752 5234 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4753 5235 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
4754 5236 4.775780 CCCTCCGTCCCACAATATAAGATA 59.224 45.833 0.00 0.00 0.00 1.98
4755 5237 5.105310 CCCTCCGTCCCACAATATAAGATAG 60.105 48.000 0.00 0.00 0.00 2.08
4756 5238 5.480772 CCTCCGTCCCACAATATAAGATAGT 59.519 44.000 0.00 0.00 0.00 2.12
4757 5239 6.014499 CCTCCGTCCCACAATATAAGATAGTT 60.014 42.308 0.00 0.00 0.00 2.24
4758 5240 7.369551 TCCGTCCCACAATATAAGATAGTTT 57.630 36.000 0.00 0.00 0.00 2.66
4759 5241 7.798071 TCCGTCCCACAATATAAGATAGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
4760 5242 8.269317 TCCGTCCCACAATATAAGATAGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
4761 5243 8.557029 CCGTCCCACAATATAAGATAGTTTTTC 58.443 37.037 0.00 0.00 0.00 2.29
4762 5244 9.104965 CGTCCCACAATATAAGATAGTTTTTCA 57.895 33.333 0.00 0.00 0.00 2.69
4765 5247 9.736023 CCCACAATATAAGATAGTTTTTCAAGC 57.264 33.333 0.00 0.00 0.00 4.01
4808 5290 9.973880 ATGATCTTATATTATGGGATGTAGGGA 57.026 33.333 0.00 0.00 0.00 4.20
4809 5291 9.439461 TGATCTTATATTATGGGATGTAGGGAG 57.561 37.037 0.00 0.00 0.00 4.30
4810 5292 9.440761 GATCTTATATTATGGGATGTAGGGAGT 57.559 37.037 0.00 0.00 0.00 3.85
4812 5294 9.937876 TCTTATATTATGGGATGTAGGGAGTAG 57.062 37.037 0.00 0.00 0.00 2.57
4813 5295 9.716556 CTTATATTATGGGATGTAGGGAGTAGT 57.283 37.037 0.00 0.00 0.00 2.73
4817 5299 7.607615 TTATGGGATGTAGGGAGTAGTTAAC 57.392 40.000 0.00 0.00 0.00 2.01
4818 5300 4.950361 TGGGATGTAGGGAGTAGTTAACA 58.050 43.478 8.61 0.00 0.00 2.41
4819 5301 5.535029 TGGGATGTAGGGAGTAGTTAACAT 58.465 41.667 8.61 0.00 0.00 2.71
4820 5302 5.365605 TGGGATGTAGGGAGTAGTTAACATG 59.634 44.000 8.61 0.00 0.00 3.21
4821 5303 5.601313 GGGATGTAGGGAGTAGTTAACATGA 59.399 44.000 8.61 0.00 0.00 3.07
4822 5304 6.099269 GGGATGTAGGGAGTAGTTAACATGAA 59.901 42.308 8.61 0.00 0.00 2.57
4823 5305 7.202102 GGGATGTAGGGAGTAGTTAACATGAAT 60.202 40.741 8.61 0.00 0.00 2.57
4865 5347 5.295292 CGATGTTTCCTGCCCATATGATATC 59.705 44.000 3.65 0.00 0.00 1.63
4866 5348 4.578871 TGTTTCCTGCCCATATGATATCG 58.421 43.478 3.65 0.00 0.00 2.92
4867 5349 4.041567 TGTTTCCTGCCCATATGATATCGT 59.958 41.667 3.65 2.37 0.00 3.73
4868 5350 5.247337 TGTTTCCTGCCCATATGATATCGTA 59.753 40.000 3.65 7.11 0.00 3.43
4869 5351 5.339008 TTCCTGCCCATATGATATCGTAC 57.661 43.478 6.80 0.00 0.00 3.67
4870 5352 3.380320 TCCTGCCCATATGATATCGTACG 59.620 47.826 9.53 9.53 0.00 3.67
4871 5353 3.130516 CCTGCCCATATGATATCGTACGT 59.869 47.826 16.05 5.39 0.00 3.57
4872 5354 4.104696 TGCCCATATGATATCGTACGTG 57.895 45.455 16.05 3.15 0.00 4.49
4877 5359 6.755141 GCCCATATGATATCGTACGTGTATTT 59.245 38.462 16.05 9.22 0.00 1.40
4913 5395 7.810658 AGTTTATAGACAACAGTTTCATGCTG 58.189 34.615 0.00 0.00 39.67 4.41
4949 5437 2.091665 CAGCCCCCATACATCCTTTTCT 60.092 50.000 0.00 0.00 0.00 2.52
5010 5498 8.344831 TGTTCTTGAGTTTGATAGTTTGACATG 58.655 33.333 0.00 0.00 0.00 3.21
5011 5499 8.345565 GTTCTTGAGTTTGATAGTTTGACATGT 58.654 33.333 0.00 0.00 0.00 3.21
5012 5500 9.554395 TTCTTGAGTTTGATAGTTTGACATGTA 57.446 29.630 0.00 0.00 0.00 2.29
5013 5501 9.554395 TCTTGAGTTTGATAGTTTGACATGTAA 57.446 29.630 0.00 0.00 0.00 2.41
5051 5540 3.405831 TCATGCTTCAAGTGAGTCAAGG 58.594 45.455 0.00 0.00 0.00 3.61
5087 5576 3.129988 GCATCAACCTGGGAGAAATTCAG 59.870 47.826 0.00 0.00 0.00 3.02
5091 5580 1.988107 ACCTGGGAGAAATTCAGCAGA 59.012 47.619 0.00 0.00 0.00 4.26
5113 5602 5.188555 AGAGTGCTGATAGAGTCAAATTGGA 59.811 40.000 0.00 0.00 36.14 3.53
5116 5605 4.225942 TGCTGATAGAGTCAAATTGGAGGT 59.774 41.667 0.00 0.00 36.14 3.85
5122 5612 2.746362 GAGTCAAATTGGAGGTCAGCAG 59.254 50.000 0.00 0.00 0.00 4.24
5127 5617 4.015084 CAAATTGGAGGTCAGCAGAAGAT 58.985 43.478 0.00 0.00 0.00 2.40
5128 5618 2.775911 TTGGAGGTCAGCAGAAGATG 57.224 50.000 0.00 0.00 0.00 2.90
5131 5621 1.552337 GGAGGTCAGCAGAAGATGTCA 59.448 52.381 0.00 0.00 31.77 3.58
5209 5699 9.579610 CATTTTTCGTTGGTAAATGACAAAATC 57.420 29.630 0.00 0.00 40.14 2.17
5210 5700 7.701809 TTTTCGTTGGTAAATGACAAAATCC 57.298 32.000 0.00 0.00 30.90 3.01
5237 5727 5.220265 CCAATCAAATGTTTAGATTGCGCAC 60.220 40.000 11.12 0.00 44.40 5.34
5258 5748 1.904144 CAACCAAAGATCATGCGCAG 58.096 50.000 18.32 8.46 0.00 5.18
5270 5760 2.161410 TCATGCGCAGTTTTGTATGACC 59.839 45.455 18.32 0.00 0.00 4.02
5271 5761 1.890876 TGCGCAGTTTTGTATGACCT 58.109 45.000 5.66 0.00 0.00 3.85
5279 5769 0.322098 TTTGTATGACCTGTGGGCGG 60.322 55.000 0.00 0.00 35.63 6.13
5280 5770 2.189521 GTATGACCTGTGGGCGGG 59.810 66.667 0.00 0.00 46.63 6.13
5281 5771 3.087253 TATGACCTGTGGGCGGGG 61.087 66.667 0.00 0.00 45.50 5.73
5312 5802 2.897969 GGGGTGATAAATCTAGGAGCGA 59.102 50.000 0.00 0.00 0.00 4.93
5317 5807 5.815740 GGTGATAAATCTAGGAGCGACAAAA 59.184 40.000 0.00 0.00 0.00 2.44
5326 5816 0.863119 GAGCGACAAAATGGATGCGC 60.863 55.000 0.00 0.00 40.80 6.09
5346 5836 4.202358 GCGCGTAGAACTGATTATTTTTGC 59.798 41.667 8.43 0.00 0.00 3.68
5351 5841 6.961554 CGTAGAACTGATTATTTTTGCTCACC 59.038 38.462 0.00 0.00 0.00 4.02
5363 5853 6.959639 TTTTTGCTCACCTAACTCTGAAAT 57.040 33.333 0.00 0.00 0.00 2.17
5381 5871 8.761575 TCTGAAATTGATAAGAAATTTGGTGC 57.238 30.769 0.00 0.00 37.35 5.01
5403 5893 5.230306 TGCGGAAAAACACTTTTACATTTCG 59.770 36.000 0.00 0.00 35.37 3.46
5411 5903 5.646606 ACACTTTTACATTTCGCTGTTTGT 58.353 33.333 0.00 0.00 0.00 2.83
5436 5928 5.589831 TCCTTGGTATATATGCTCCTGCTA 58.410 41.667 0.62 0.00 40.48 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.249657 CGCCTTCTGAGCTACCCATC 60.250 60.000 0.00 0.00 0.00 3.51
21 22 1.333619 CTCTCTCGCCTTCTGAGCTAC 59.666 57.143 0.00 0.00 33.41 3.58
25 26 1.468985 TTCCTCTCTCGCCTTCTGAG 58.531 55.000 0.00 0.00 34.72 3.35
27 28 2.232452 TCTTTTCCTCTCTCGCCTTCTG 59.768 50.000 0.00 0.00 0.00 3.02
34 35 2.630580 CCCCCTATCTTTTCCTCTCTCG 59.369 54.545 0.00 0.00 0.00 4.04
56 57 1.652947 TACCACTCAAAGACCCCCTC 58.347 55.000 0.00 0.00 0.00 4.30
66 67 4.139859 TCGTCCAACTTTTACCACTCAA 57.860 40.909 0.00 0.00 0.00 3.02
68 69 3.435671 CCATCGTCCAACTTTTACCACTC 59.564 47.826 0.00 0.00 0.00 3.51
180 182 1.825191 GTGATGGTGGGATGCGCAT 60.825 57.895 25.66 25.66 0.00 4.73
181 183 2.438254 GTGATGGTGGGATGCGCA 60.438 61.111 14.96 14.96 0.00 6.09
184 186 2.363306 TTATGGTGATGGTGGGATGC 57.637 50.000 0.00 0.00 0.00 3.91
185 187 4.217510 ACATTTATGGTGATGGTGGGATG 58.782 43.478 0.00 0.00 0.00 3.51
186 188 4.541250 ACATTTATGGTGATGGTGGGAT 57.459 40.909 0.00 0.00 0.00 3.85
187 189 4.724293 TCTACATTTATGGTGATGGTGGGA 59.276 41.667 0.00 0.00 0.00 4.37
188 190 5.047566 TCTACATTTATGGTGATGGTGGG 57.952 43.478 0.00 0.00 0.00 4.61
189 191 5.065914 CCTCTACATTTATGGTGATGGTGG 58.934 45.833 0.00 0.00 0.00 4.61
190 192 5.928976 TCCTCTACATTTATGGTGATGGTG 58.071 41.667 0.00 0.00 0.00 4.17
191 193 6.537355 CATCCTCTACATTTATGGTGATGGT 58.463 40.000 0.00 0.00 0.00 3.55
192 194 5.413833 GCATCCTCTACATTTATGGTGATGG 59.586 44.000 0.00 0.00 0.00 3.51
194 196 5.073554 TGGCATCCTCTACATTTATGGTGAT 59.926 40.000 0.00 0.00 0.00 3.06
202 211 6.904626 ACTCTATTTGGCATCCTCTACATTT 58.095 36.000 0.00 0.00 0.00 2.32
205 214 5.211973 AGACTCTATTTGGCATCCTCTACA 58.788 41.667 0.00 0.00 0.00 2.74
206 215 5.799827 AGACTCTATTTGGCATCCTCTAC 57.200 43.478 0.00 0.00 0.00 2.59
234 243 1.230324 GAGCCACAACTTCCACTCAC 58.770 55.000 0.00 0.00 0.00 3.51
254 263 4.503714 AATCGAAGTACCCATGACCAAT 57.496 40.909 0.00 0.00 0.00 3.16
256 265 3.262151 TGAAATCGAAGTACCCATGACCA 59.738 43.478 0.00 0.00 0.00 4.02
260 269 3.259064 ACGTGAAATCGAAGTACCCATG 58.741 45.455 0.00 0.00 34.70 3.66
261 270 3.604875 ACGTGAAATCGAAGTACCCAT 57.395 42.857 0.00 0.00 34.70 4.00
274 283 1.511318 CCCATGCGTCCAACGTGAAA 61.511 55.000 0.00 0.00 44.73 2.69
286 295 1.442526 CTAAGAGCTTGCCCCATGCG 61.443 60.000 0.00 0.00 45.60 4.73
289 298 0.257039 CACCTAAGAGCTTGCCCCAT 59.743 55.000 0.00 0.00 0.00 4.00
291 300 0.393132 GTCACCTAAGAGCTTGCCCC 60.393 60.000 0.00 0.00 0.00 5.80
303 312 1.195115 GAGCATGTCTGGGTCACCTA 58.805 55.000 0.00 0.00 37.76 3.08
304 313 0.837691 TGAGCATGTCTGGGTCACCT 60.838 55.000 0.00 0.00 37.81 4.00
310 319 0.322648 TGTGACTGAGCATGTCTGGG 59.677 55.000 0.00 0.00 35.63 4.45
316 325 3.242518 CAAGCAAATGTGACTGAGCATG 58.757 45.455 0.00 0.00 0.00 4.06
317 326 2.889045 ACAAGCAAATGTGACTGAGCAT 59.111 40.909 0.00 0.00 30.82 3.79
318 327 2.300433 ACAAGCAAATGTGACTGAGCA 58.700 42.857 0.00 0.00 30.82 4.26
362 371 1.153784 CATTGCATGCGTTGGACCC 60.154 57.895 14.09 0.00 0.00 4.46
380 389 1.809684 ACAAAGTTCTCCGGCTAAGC 58.190 50.000 0.00 0.00 0.00 3.09
429 438 7.333423 CGAGACTAGTTATGATGTTTTTCCCAA 59.667 37.037 0.00 0.00 0.00 4.12
445 455 1.893801 CTTCCACCCACGAGACTAGTT 59.106 52.381 0.00 0.00 0.00 2.24
448 458 1.254026 CACTTCCACCCACGAGACTA 58.746 55.000 0.00 0.00 0.00 2.59
460 470 1.215173 CAAGATATGCCCCCACTTCCA 59.785 52.381 0.00 0.00 0.00 3.53
514 524 2.082836 ATTACCAAACCACGCCCCCA 62.083 55.000 0.00 0.00 0.00 4.96
515 525 0.034283 TATTACCAAACCACGCCCCC 60.034 55.000 0.00 0.00 0.00 5.40
516 526 1.097232 GTATTACCAAACCACGCCCC 58.903 55.000 0.00 0.00 0.00 5.80
517 527 0.728542 CGTATTACCAAACCACGCCC 59.271 55.000 0.00 0.00 0.00 6.13
520 530 1.440708 TGGCGTATTACCAAACCACG 58.559 50.000 0.00 0.00 33.12 4.94
552 562 9.487790 GGTGAAAGAAATCATTTTATCCACAAA 57.512 29.630 0.00 0.00 29.02 2.83
553 563 8.869109 AGGTGAAAGAAATCATTTTATCCACAA 58.131 29.630 0.00 0.00 29.02 3.33
554 564 8.421249 AGGTGAAAGAAATCATTTTATCCACA 57.579 30.769 0.00 0.00 29.02 4.17
555 565 8.522830 TGAGGTGAAAGAAATCATTTTATCCAC 58.477 33.333 0.00 0.00 0.00 4.02
556 566 8.522830 GTGAGGTGAAAGAAATCATTTTATCCA 58.477 33.333 0.00 0.00 0.00 3.41
557 567 8.522830 TGTGAGGTGAAAGAAATCATTTTATCC 58.477 33.333 0.00 0.00 0.00 2.59
558 568 9.912634 TTGTGAGGTGAAAGAAATCATTTTATC 57.087 29.630 0.00 0.00 0.00 1.75
560 570 9.912634 GATTGTGAGGTGAAAGAAATCATTTTA 57.087 29.630 0.00 0.00 0.00 1.52
561 571 7.874528 GGATTGTGAGGTGAAAGAAATCATTTT 59.125 33.333 0.00 0.00 0.00 1.82
562 572 7.381323 GGATTGTGAGGTGAAAGAAATCATTT 58.619 34.615 0.00 0.00 0.00 2.32
563 573 6.071165 GGGATTGTGAGGTGAAAGAAATCATT 60.071 38.462 0.00 0.00 0.00 2.57
564 574 5.420104 GGGATTGTGAGGTGAAAGAAATCAT 59.580 40.000 0.00 0.00 0.00 2.45
565 575 4.766891 GGGATTGTGAGGTGAAAGAAATCA 59.233 41.667 0.00 0.00 0.00 2.57
566 576 4.766891 TGGGATTGTGAGGTGAAAGAAATC 59.233 41.667 0.00 0.00 0.00 2.17
567 577 4.739793 TGGGATTGTGAGGTGAAAGAAAT 58.260 39.130 0.00 0.00 0.00 2.17
568 578 4.177537 TGGGATTGTGAGGTGAAAGAAA 57.822 40.909 0.00 0.00 0.00 2.52
569 579 3.874383 TGGGATTGTGAGGTGAAAGAA 57.126 42.857 0.00 0.00 0.00 2.52
570 580 3.874383 TTGGGATTGTGAGGTGAAAGA 57.126 42.857 0.00 0.00 0.00 2.52
571 581 6.588719 TTATTTGGGATTGTGAGGTGAAAG 57.411 37.500 0.00 0.00 0.00 2.62
572 582 7.552050 AATTATTTGGGATTGTGAGGTGAAA 57.448 32.000 0.00 0.00 0.00 2.69
573 583 6.127758 CGAATTATTTGGGATTGTGAGGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
574 584 5.356751 CGAATTATTTGGGATTGTGAGGTGA 59.643 40.000 0.00 0.00 0.00 4.02
575 585 5.581605 CGAATTATTTGGGATTGTGAGGTG 58.418 41.667 0.00 0.00 0.00 4.00
576 586 4.097892 GCGAATTATTTGGGATTGTGAGGT 59.902 41.667 0.00 0.00 0.00 3.85
577 587 4.339247 AGCGAATTATTTGGGATTGTGAGG 59.661 41.667 0.00 0.00 0.00 3.86
578 588 5.505173 AGCGAATTATTTGGGATTGTGAG 57.495 39.130 0.00 0.00 0.00 3.51
579 589 5.913137 AAGCGAATTATTTGGGATTGTGA 57.087 34.783 0.00 0.00 0.00 3.58
580 590 6.039270 TCCTAAGCGAATTATTTGGGATTGTG 59.961 38.462 0.00 0.00 0.00 3.33
581 591 6.126409 TCCTAAGCGAATTATTTGGGATTGT 58.874 36.000 0.00 0.00 0.00 2.71
582 592 6.263168 ACTCCTAAGCGAATTATTTGGGATTG 59.737 38.462 0.00 0.00 32.10 2.67
583 593 6.365520 ACTCCTAAGCGAATTATTTGGGATT 58.634 36.000 0.00 0.00 32.10 3.01
584 594 5.941788 ACTCCTAAGCGAATTATTTGGGAT 58.058 37.500 0.00 0.00 32.10 3.85
585 595 5.104693 TGACTCCTAAGCGAATTATTTGGGA 60.105 40.000 0.00 2.58 31.70 4.37
586 596 5.123227 TGACTCCTAAGCGAATTATTTGGG 58.877 41.667 0.00 0.00 0.00 4.12
587 597 5.817816 ACTGACTCCTAAGCGAATTATTTGG 59.182 40.000 0.00 0.00 0.00 3.28
588 598 6.910536 ACTGACTCCTAAGCGAATTATTTG 57.089 37.500 0.00 0.00 0.00 2.32
589 599 7.553334 TGTACTGACTCCTAAGCGAATTATTT 58.447 34.615 0.00 0.00 0.00 1.40
590 600 7.108841 TGTACTGACTCCTAAGCGAATTATT 57.891 36.000 0.00 0.00 0.00 1.40
591 601 6.710597 TGTACTGACTCCTAAGCGAATTAT 57.289 37.500 0.00 0.00 0.00 1.28
592 602 6.710597 ATGTACTGACTCCTAAGCGAATTA 57.289 37.500 0.00 0.00 0.00 1.40
593 603 5.599999 ATGTACTGACTCCTAAGCGAATT 57.400 39.130 0.00 0.00 0.00 2.17
594 604 6.710597 TTATGTACTGACTCCTAAGCGAAT 57.289 37.500 0.00 0.00 0.00 3.34
595 605 6.376299 TCTTTATGTACTGACTCCTAAGCGAA 59.624 38.462 0.00 0.00 0.00 4.70
596 606 5.884232 TCTTTATGTACTGACTCCTAAGCGA 59.116 40.000 0.00 0.00 0.00 4.93
597 607 6.132791 TCTTTATGTACTGACTCCTAAGCG 57.867 41.667 0.00 0.00 0.00 4.68
598 608 8.950208 AAATCTTTATGTACTGACTCCTAAGC 57.050 34.615 0.00 0.00 0.00 3.09
615 625 9.921637 AACCGCAGAAATGAAATTAAATCTTTA 57.078 25.926 0.00 0.00 33.67 1.85
616 626 8.831715 AACCGCAGAAATGAAATTAAATCTTT 57.168 26.923 0.00 0.00 33.67 2.52
617 627 8.711457 CAAACCGCAGAAATGAAATTAAATCTT 58.289 29.630 0.00 0.00 33.67 2.40
618 628 7.872483 ACAAACCGCAGAAATGAAATTAAATCT 59.128 29.630 0.00 0.00 33.67 2.40
619 629 8.017587 ACAAACCGCAGAAATGAAATTAAATC 57.982 30.769 0.00 0.00 33.67 2.17
620 630 7.961325 ACAAACCGCAGAAATGAAATTAAAT 57.039 28.000 0.00 0.00 33.67 1.40
621 631 7.708752 AGAACAAACCGCAGAAATGAAATTAAA 59.291 29.630 0.00 0.00 33.67 1.52
622 632 7.206687 AGAACAAACCGCAGAAATGAAATTAA 58.793 30.769 0.00 0.00 33.67 1.40
623 633 6.744112 AGAACAAACCGCAGAAATGAAATTA 58.256 32.000 0.00 0.00 33.67 1.40
624 634 5.600696 AGAACAAACCGCAGAAATGAAATT 58.399 33.333 0.00 0.00 38.98 1.82
625 635 5.200368 AGAACAAACCGCAGAAATGAAAT 57.800 34.783 0.00 0.00 0.00 2.17
626 636 4.499019 GGAGAACAAACCGCAGAAATGAAA 60.499 41.667 0.00 0.00 0.00 2.69
627 637 3.004315 GGAGAACAAACCGCAGAAATGAA 59.996 43.478 0.00 0.00 0.00 2.57
628 638 2.552315 GGAGAACAAACCGCAGAAATGA 59.448 45.455 0.00 0.00 0.00 2.57
629 639 2.554032 AGGAGAACAAACCGCAGAAATG 59.446 45.455 0.00 0.00 0.00 2.32
630 640 2.814336 GAGGAGAACAAACCGCAGAAAT 59.186 45.455 0.00 0.00 0.00 2.17
631 641 2.158813 AGAGGAGAACAAACCGCAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
632 642 1.416401 AGAGGAGAACAAACCGCAGAA 59.584 47.619 0.00 0.00 0.00 3.02
633 643 1.048601 AGAGGAGAACAAACCGCAGA 58.951 50.000 0.00 0.00 0.00 4.26
634 644 1.801178 GAAGAGGAGAACAAACCGCAG 59.199 52.381 0.00 0.00 0.00 5.18
635 645 1.140052 TGAAGAGGAGAACAAACCGCA 59.860 47.619 0.00 0.00 0.00 5.69
636 646 1.531578 GTGAAGAGGAGAACAAACCGC 59.468 52.381 0.00 0.00 0.00 5.68
637 647 2.802816 CTGTGAAGAGGAGAACAAACCG 59.197 50.000 0.00 0.00 0.00 4.44
638 648 3.142174 CCTGTGAAGAGGAGAACAAACC 58.858 50.000 0.00 0.00 34.69 3.27
639 649 3.809905 ACCTGTGAAGAGGAGAACAAAC 58.190 45.455 0.00 0.00 36.51 2.93
640 650 4.503714 AACCTGTGAAGAGGAGAACAAA 57.496 40.909 0.00 0.00 36.51 2.83
641 651 4.899457 TCTAACCTGTGAAGAGGAGAACAA 59.101 41.667 0.00 0.00 36.51 2.83
642 652 4.281182 GTCTAACCTGTGAAGAGGAGAACA 59.719 45.833 0.00 0.00 36.51 3.18
643 653 4.281182 TGTCTAACCTGTGAAGAGGAGAAC 59.719 45.833 0.00 0.00 36.51 3.01
644 654 4.281182 GTGTCTAACCTGTGAAGAGGAGAA 59.719 45.833 0.00 0.00 36.51 2.87
645 655 3.827302 GTGTCTAACCTGTGAAGAGGAGA 59.173 47.826 0.00 0.00 36.51 3.71
646 656 3.056465 GGTGTCTAACCTGTGAAGAGGAG 60.056 52.174 0.00 0.00 46.55 3.69
647 657 2.897969 GGTGTCTAACCTGTGAAGAGGA 59.102 50.000 0.00 0.00 46.55 3.71
648 658 3.320673 GGTGTCTAACCTGTGAAGAGG 57.679 52.381 0.00 0.00 46.55 3.69
658 668 1.412387 GTCGTTGACGGTGTCTAACC 58.588 55.000 3.48 0.00 46.60 2.85
659 669 1.000938 AGGTCGTTGACGGTGTCTAAC 60.001 52.381 3.48 1.50 40.29 2.34
660 670 1.321474 AGGTCGTTGACGGTGTCTAA 58.679 50.000 3.48 0.00 40.29 2.10
661 671 2.183478 TAGGTCGTTGACGGTGTCTA 57.817 50.000 3.48 0.00 40.29 2.59
662 672 1.201647 CATAGGTCGTTGACGGTGTCT 59.798 52.381 3.48 0.12 40.29 3.41
686 696 2.502538 CCCACAAGGCAATTGGATTCAT 59.497 45.455 7.72 0.00 43.68 2.57
701 711 2.266372 CGACATACGCCCCCACAA 59.734 61.111 0.00 0.00 34.51 3.33
719 729 1.066573 AGAGAGTGATTCCGCACAAGG 60.067 52.381 0.00 0.00 41.19 3.61
723 733 2.094494 TCAAGAGAGAGTGATTCCGCAC 60.094 50.000 0.00 0.00 39.05 5.34
726 736 5.290643 GTCATTTCAAGAGAGAGTGATTCCG 59.709 44.000 0.00 0.00 0.00 4.30
730 740 5.752036 TGGTCATTTCAAGAGAGAGTGAT 57.248 39.130 0.00 0.00 0.00 3.06
731 741 5.483231 AGATGGTCATTTCAAGAGAGAGTGA 59.517 40.000 0.00 0.00 0.00 3.41
759 769 0.537143 TTTCTCTGCAATGCCCACGT 60.537 50.000 1.53 0.00 0.00 4.49
772 782 6.874134 TCTCGTAAATTTTGCTAGCTTTCTCT 59.126 34.615 17.23 0.00 0.00 3.10
793 803 5.857517 AGAGCGTTTAGTTCTAACTTTCTCG 59.142 40.000 0.00 3.59 38.71 4.04
829 839 1.684248 GGCGGTTAGTACTCCCTCTGA 60.684 57.143 0.00 0.00 0.00 3.27
841 851 1.111116 TAGTCGGGGATGGCGGTTAG 61.111 60.000 0.00 0.00 0.00 2.34
843 853 1.991167 TTAGTCGGGGATGGCGGTT 60.991 57.895 0.00 0.00 0.00 4.44
845 855 2.108362 GTTAGTCGGGGATGGCGG 59.892 66.667 0.00 0.00 0.00 6.13
846 856 2.108362 GGTTAGTCGGGGATGGCG 59.892 66.667 0.00 0.00 0.00 5.69
847 857 1.917336 TTGGGTTAGTCGGGGATGGC 61.917 60.000 0.00 0.00 0.00 4.40
857 867 0.949105 CGCGTGCTTCTTGGGTTAGT 60.949 55.000 0.00 0.00 0.00 2.24
865 875 2.738521 ACATCGCGCGTGCTTCTT 60.739 55.556 30.98 8.03 39.65 2.52
866 876 3.481903 CACATCGCGCGTGCTTCT 61.482 61.111 30.98 8.39 39.65 2.85
867 877 1.479420 TATCACATCGCGCGTGCTTC 61.479 55.000 30.98 0.00 39.65 3.86
868 878 1.482621 CTATCACATCGCGCGTGCTT 61.483 55.000 30.98 16.05 39.65 3.91
870 880 1.479420 TTCTATCACATCGCGCGTGC 61.479 55.000 30.98 11.84 34.27 5.34
871 881 0.227234 GTTCTATCACATCGCGCGTG 59.773 55.000 30.98 26.84 35.63 5.34
872 882 1.200474 CGTTCTATCACATCGCGCGT 61.200 55.000 30.98 14.63 0.00 6.01
873 883 0.928451 TCGTTCTATCACATCGCGCG 60.928 55.000 26.76 26.76 0.00 6.86
874 884 0.772926 CTCGTTCTATCACATCGCGC 59.227 55.000 0.00 0.00 0.00 6.86
875 885 2.106750 ACTCGTTCTATCACATCGCG 57.893 50.000 0.00 0.00 0.00 5.87
897 912 9.010029 ACGACATTCCTCACTATTTTTACATTT 57.990 29.630 0.00 0.00 0.00 2.32
899 914 8.561738 AACGACATTCCTCACTATTTTTACAT 57.438 30.769 0.00 0.00 0.00 2.29
901 916 9.673454 AAAAACGACATTCCTCACTATTTTTAC 57.327 29.630 0.00 0.00 0.00 2.01
937 959 7.231925 GGGTAGGATTTTGGTTGAAGACTTTTA 59.768 37.037 0.00 0.00 0.00 1.52
938 960 6.041637 GGGTAGGATTTTGGTTGAAGACTTTT 59.958 38.462 0.00 0.00 0.00 2.27
983 1008 6.405953 GGTGATTCTGGTGGGAGATATATACG 60.406 46.154 0.00 0.00 0.00 3.06
984 1009 6.127026 GGGTGATTCTGGTGGGAGATATATAC 60.127 46.154 0.00 0.00 0.00 1.47
985 1010 5.964477 GGGTGATTCTGGTGGGAGATATATA 59.036 44.000 0.00 0.00 0.00 0.86
986 1011 4.785376 GGGTGATTCTGGTGGGAGATATAT 59.215 45.833 0.00 0.00 0.00 0.86
992 1017 1.609783 GGGGTGATTCTGGTGGGAG 59.390 63.158 0.00 0.00 0.00 4.30
1020 1045 4.753516 TTTGAATGGAGCGATTCTAGGA 57.246 40.909 6.74 0.00 34.04 2.94
1057 1082 3.056536 GGGTCTTTTTGAGGATGCCTTTC 60.057 47.826 0.00 0.00 31.76 2.62
1061 1086 1.546029 GTGGGTCTTTTTGAGGATGCC 59.454 52.381 0.00 0.00 0.00 4.40
1139 1198 4.443266 AAGGCGGAGTCAGCGAGC 62.443 66.667 9.22 0.00 35.00 5.03
1205 1265 0.414629 TTTAAGGGGAGGAGGACGGA 59.585 55.000 0.00 0.00 0.00 4.69
1294 1404 3.044305 GCGCCGAGTGTTGAAGCT 61.044 61.111 0.00 0.00 0.00 3.74
1437 1549 4.101448 CTTGGGGCTGGGGACGAG 62.101 72.222 0.00 0.00 0.00 4.18
1461 1576 3.213402 GCGACGGGAGAGAGGGAG 61.213 72.222 0.00 0.00 0.00 4.30
1575 1695 1.811266 CAGCACGGACCGGAATCAG 60.811 63.158 20.00 0.00 0.00 2.90
1689 1820 1.187087 ACGGCTCGAGAAGGAGAAAT 58.813 50.000 18.75 0.00 36.08 2.17
1722 1853 1.317431 GCATGGCAGCATCAGAACCA 61.317 55.000 0.00 0.00 34.28 3.67
1736 1867 1.526575 AACACCAAAGGAGCGCATGG 61.527 55.000 11.47 12.21 38.91 3.66
1892 2024 1.396301 GCAAGGAAGCAGATCTGAACG 59.604 52.381 27.04 7.50 0.00 3.95
1949 2081 3.181530 CGTCACTAGCCAGACAAAATTCG 60.182 47.826 10.13 0.00 34.48 3.34
1962 2094 2.387309 ATGCACATGCGTCACTAGC 58.613 52.632 0.00 0.00 45.83 3.42
2037 2178 0.447801 GCTAACGCCACAACCATCAG 59.552 55.000 0.00 0.00 0.00 2.90
2089 2230 1.068055 CAAGTGCAGTGCTCCAATTCC 60.068 52.381 17.60 0.00 0.00 3.01
2090 2231 1.610522 ACAAGTGCAGTGCTCCAATTC 59.389 47.619 17.60 0.00 0.00 2.17
2093 2234 0.107263 TCACAAGTGCAGTGCTCCAA 60.107 50.000 17.60 0.00 36.93 3.53
2096 2237 0.883814 AGCTCACAAGTGCAGTGCTC 60.884 55.000 17.60 13.26 36.93 4.26
2124 2265 4.120792 TCAGTGCAAGCAAACAAATGAA 57.879 36.364 0.00 0.00 0.00 2.57
2148 2289 4.744795 AGCTTTATACAGTGGTCTCCTG 57.255 45.455 0.00 0.00 36.01 3.86
2154 2295 4.819105 TGCAGTAGCTTTATACAGTGGT 57.181 40.909 0.00 0.00 42.74 4.16
2155 2296 5.178797 AGTTGCAGTAGCTTTATACAGTGG 58.821 41.667 0.00 0.00 42.74 4.00
2158 2299 6.813649 TCAGAAGTTGCAGTAGCTTTATACAG 59.186 38.462 0.00 0.00 42.74 2.74
2161 2302 7.824289 ACATTCAGAAGTTGCAGTAGCTTTATA 59.176 33.333 0.00 0.00 42.74 0.98
2164 2305 4.823989 ACATTCAGAAGTTGCAGTAGCTTT 59.176 37.500 0.00 0.00 42.74 3.51
2171 2312 6.580041 GTCATAAACACATTCAGAAGTTGCAG 59.420 38.462 0.00 0.00 0.00 4.41
2173 2314 5.565259 CGTCATAAACACATTCAGAAGTTGC 59.435 40.000 0.00 0.00 0.00 4.17
2174 2315 6.792250 GTCGTCATAAACACATTCAGAAGTTG 59.208 38.462 0.00 0.00 0.00 3.16
2176 2317 5.989168 TGTCGTCATAAACACATTCAGAAGT 59.011 36.000 0.00 0.00 0.00 3.01
2183 2324 4.059511 TCGGTTGTCGTCATAAACACATT 58.940 39.130 0.00 0.00 40.32 2.71
2187 2330 2.918600 CGATCGGTTGTCGTCATAAACA 59.081 45.455 7.38 0.00 40.32 2.83
2202 2345 0.673644 AAGAACAAGCCACCGATCGG 60.674 55.000 32.20 32.20 42.03 4.18
2216 2359 5.869350 ACAGCAACGCAGATATAAAAGAAC 58.131 37.500 0.00 0.00 0.00 3.01
2232 2377 4.813296 ACAGTTAGCTACAAACAGCAAC 57.187 40.909 0.00 1.18 44.35 4.17
2256 2401 2.221169 TGAGTGACCAATGCACAAGAC 58.779 47.619 0.00 0.00 38.70 3.01
2318 2463 4.997395 GTGGAATTCACTACAGTGTGTCAT 59.003 41.667 5.88 0.00 45.76 3.06
2326 2471 9.988350 GTAATTAACATGTGGAATTCACTACAG 57.012 33.333 17.77 6.31 46.20 2.74
2366 2518 1.262683 GTCTGTTGCTGAGTTGCTCAC 59.737 52.381 0.00 0.00 35.39 3.51
2367 2519 1.139654 AGTCTGTTGCTGAGTTGCTCA 59.860 47.619 0.00 0.00 38.25 4.26
2368 2520 1.530293 CAGTCTGTTGCTGAGTTGCTC 59.470 52.381 0.00 0.00 36.12 4.26
2369 2521 1.139654 TCAGTCTGTTGCTGAGTTGCT 59.860 47.619 0.00 0.00 37.98 3.91
2370 2522 1.262683 GTCAGTCTGTTGCTGAGTTGC 59.737 52.381 0.00 0.00 42.80 4.17
2371 2523 2.831333 AGTCAGTCTGTTGCTGAGTTG 58.169 47.619 0.00 0.00 42.16 3.16
2372 2524 3.550437 AAGTCAGTCTGTTGCTGAGTT 57.450 42.857 8.94 8.94 46.09 3.01
2373 2525 3.118629 TGAAAGTCAGTCTGTTGCTGAGT 60.119 43.478 0.00 0.00 45.47 3.41
2398 2550 2.243810 GGAAATTGGCCTGTTGGTACA 58.756 47.619 3.32 0.00 35.27 2.90
2399 2551 1.548719 GGGAAATTGGCCTGTTGGTAC 59.451 52.381 3.32 0.00 35.27 3.34
2402 2554 1.552799 GGGGGAAATTGGCCTGTTGG 61.553 60.000 3.32 0.00 0.00 3.77
2403 2555 0.835543 TGGGGGAAATTGGCCTGTTG 60.836 55.000 3.32 0.00 0.00 3.33
2419 2571 0.033781 CAGTGCACCACCATTTTGGG 59.966 55.000 14.63 0.00 43.37 4.12
2421 2573 1.600164 CGACAGTGCACCACCATTTTG 60.600 52.381 14.63 4.99 34.49 2.44
2429 2581 0.531974 GAGTTTCCGACAGTGCACCA 60.532 55.000 14.63 0.00 0.00 4.17
2467 2619 0.250684 TGAATCCGTGCTTTCAGGCA 60.251 50.000 0.00 0.00 40.15 4.75
2479 2631 2.159599 GCACTCTGAAAAGCTGAATCCG 60.160 50.000 0.00 0.00 0.00 4.18
2490 2642 3.251729 GCTGAATGAGTTGCACTCTGAAA 59.748 43.478 14.60 0.00 45.27 2.69
2492 2644 2.224354 TGCTGAATGAGTTGCACTCTGA 60.224 45.455 14.60 0.00 45.27 3.27
2500 2652 3.750130 ACTTAGCAGTGCTGAATGAGTTG 59.250 43.478 27.97 8.12 40.10 3.16
2521 2673 3.988379 TCATGTTTTCAGACAAGGCAC 57.012 42.857 0.00 0.00 32.47 5.01
2545 2697 1.207089 CAGCCTTCGGTACTTCCATGA 59.793 52.381 0.00 0.00 35.57 3.07
2597 2749 3.430453 AGCATCTGGTAGATAGGAGCTC 58.570 50.000 4.71 4.71 32.12 4.09
2651 2803 6.821665 GTGAACAGACTAAAGGCATTGGTATA 59.178 38.462 0.00 0.00 32.16 1.47
2792 2947 2.353889 CACAGGTTCAGTATCATGCTGC 59.646 50.000 0.00 0.00 34.21 5.25
2836 2991 3.614092 ACCACAGGCTCATTATTCACAG 58.386 45.455 0.00 0.00 0.00 3.66
2859 3014 4.142038 GTGGTTAACTTGATCCCACAGTT 58.858 43.478 5.42 6.18 43.96 3.16
2864 3019 3.499563 CCAAGGTGGTTAACTTGATCCCA 60.500 47.826 5.42 0.00 45.22 4.37
2953 3108 5.132502 TCTCAGCATTCACTTTCAAAGGAA 58.867 37.500 1.31 3.06 0.00 3.36
2971 3126 8.001881 AGTGTTAACTGGAGTATGTATCTCAG 57.998 38.462 7.22 0.00 34.48 3.35
2974 3129 7.068839 CCTGAGTGTTAACTGGAGTATGTATCT 59.931 40.741 7.22 0.00 36.52 1.98
3003 3158 5.522460 CGTTTGTCAACTCTTCCAAGTTAGA 59.478 40.000 0.00 0.00 37.38 2.10
3006 3161 4.258543 TCGTTTGTCAACTCTTCCAAGTT 58.741 39.130 0.00 0.00 40.08 2.66
3031 3186 1.639298 CGAGCAAGCCCTTGTACAGC 61.639 60.000 9.53 0.00 42.31 4.40
3038 3193 1.767759 AATTATGCGAGCAAGCCCTT 58.232 45.000 0.57 0.00 36.02 3.95
3042 3197 2.527487 CGTTCAAATTATGCGAGCAAGC 59.473 45.455 0.57 0.00 37.71 4.01
3047 3202 4.033358 AGAGCTTCGTTCAAATTATGCGAG 59.967 41.667 0.00 0.00 33.09 5.03
3060 3215 3.674682 CGAGAGGAATTCAGAGCTTCGTT 60.675 47.826 7.93 0.00 0.00 3.85
3092 3247 3.319137 TCTCTGTACACTCCACAATGC 57.681 47.619 0.00 0.00 0.00 3.56
3267 3422 2.028748 CCTGGCATTTCTCCACAAAAGG 60.029 50.000 0.00 0.00 0.00 3.11
3353 3508 1.146774 TGGGACAAGCTTGGGAATTCA 59.853 47.619 29.18 15.14 31.92 2.57
3395 3550 5.344743 TTTCATCTCTGATCGCCTTACTT 57.655 39.130 0.00 0.00 0.00 2.24
3545 3700 2.380064 TTGTTGAGTTGGGAATGCCT 57.620 45.000 0.00 0.00 0.00 4.75
3635 3790 9.236006 GATCATGTAATGCATTATTCCTAGGTT 57.764 33.333 21.52 0.14 46.21 3.50
3684 3839 0.029433 TCTCCTCGAATGACATCGCG 59.971 55.000 0.00 0.00 42.44 5.87
3778 3933 3.942829 TGTTGGGCTAGATCAAAGAGTG 58.057 45.455 0.00 0.00 0.00 3.51
3779 3934 4.640771 TTGTTGGGCTAGATCAAAGAGT 57.359 40.909 0.00 0.00 0.00 3.24
3780 3935 6.521151 AAATTGTTGGGCTAGATCAAAGAG 57.479 37.500 0.00 0.00 0.00 2.85
3781 3936 6.916360 AAAATTGTTGGGCTAGATCAAAGA 57.084 33.333 0.00 0.00 0.00 2.52
3791 3946 7.713073 TCGAAAGATTTTAAAAATTGTTGGGCT 59.287 29.630 4.44 0.00 33.31 5.19
3795 3950 9.356929 GCACTCGAAAGATTTTAAAAATTGTTG 57.643 29.630 4.44 0.00 40.84 3.33
3800 3955 9.643693 ATCATGCACTCGAAAGATTTTAAAAAT 57.356 25.926 4.44 0.00 40.84 1.82
3801 3956 9.128107 GATCATGCACTCGAAAGATTTTAAAAA 57.872 29.630 4.44 0.00 40.84 1.94
3824 3979 6.521151 ACACCATTGAAAGAAGGAATGATC 57.479 37.500 0.00 0.00 30.03 2.92
3855 4010 5.728471 TCCTGCAAAAATCAAACAAGAACA 58.272 33.333 0.00 0.00 0.00 3.18
3928 4083 3.122297 GTGAGATGCAGCAGTATCACTC 58.878 50.000 21.68 13.87 39.09 3.51
3947 4102 0.443869 GCAGCAACACGTAGATGGTG 59.556 55.000 17.28 17.28 43.47 4.17
3986 4141 2.301577 AGCTTCATAACTCTCCGCAC 57.698 50.000 0.00 0.00 0.00 5.34
3991 4146 8.499403 AATTACTTGGAAGCTTCATAACTCTC 57.501 34.615 27.02 8.32 0.00 3.20
4138 4293 6.467677 TGTTGATTTCTCTTGGAACTAGGAG 58.532 40.000 0.00 0.00 33.13 3.69
4218 4373 4.024725 TCACAAAAAGACCCGAACATAACG 60.025 41.667 0.00 0.00 0.00 3.18
4227 4382 5.941948 AGAAAGTATCACAAAAAGACCCG 57.058 39.130 0.00 0.00 0.00 5.28
4228 4383 7.511959 AGAAGAAAGTATCACAAAAAGACCC 57.488 36.000 0.00 0.00 0.00 4.46
4236 4392 8.932791 GGAACGAAATAGAAGAAAGTATCACAA 58.067 33.333 0.00 0.00 0.00 3.33
4262 4418 7.798596 ATCAGGAACTAAAACTGCATATCAG 57.201 36.000 0.00 1.93 43.34 2.90
4328 4484 4.914312 CAATCGTGCTTACGAAAGGTAA 57.086 40.909 6.62 0.00 45.62 2.85
4347 4503 4.401022 AGATCATTTCTCTGTTGTGGCAA 58.599 39.130 0.00 0.00 0.00 4.52
4365 4521 6.868864 TGCTGCTTACGAAATAGGAATAGATC 59.131 38.462 0.00 0.00 0.00 2.75
4371 4527 4.159693 TCTCTGCTGCTTACGAAATAGGAA 59.840 41.667 0.00 0.00 0.00 3.36
4372 4528 3.699538 TCTCTGCTGCTTACGAAATAGGA 59.300 43.478 0.00 0.00 0.00 2.94
4373 4529 4.046938 TCTCTGCTGCTTACGAAATAGG 57.953 45.455 0.00 0.00 0.00 2.57
4374 4530 6.595772 ATTTCTCTGCTGCTTACGAAATAG 57.404 37.500 13.69 0.00 31.52 1.73
4381 4537 6.018343 GGAGTGATAATTTCTCTGCTGCTTAC 60.018 42.308 0.00 0.00 34.54 2.34
4427 4892 8.613060 ACAATACATCAGATTTATTCGCATCT 57.387 30.769 0.00 0.00 0.00 2.90
4472 4939 9.717942 GAGTGATTACAATAGCTTAAGGATGAT 57.282 33.333 4.29 0.00 0.00 2.45
4473 4940 8.928448 AGAGTGATTACAATAGCTTAAGGATGA 58.072 33.333 4.29 0.00 0.00 2.92
4474 4941 9.553064 AAGAGTGATTACAATAGCTTAAGGATG 57.447 33.333 4.29 0.00 0.00 3.51
4476 4943 9.601217 GAAAGAGTGATTACAATAGCTTAAGGA 57.399 33.333 4.29 0.00 0.00 3.36
4477 4944 9.383519 TGAAAGAGTGATTACAATAGCTTAAGG 57.616 33.333 4.29 0.00 0.00 2.69
4480 4947 9.330063 CCATGAAAGAGTGATTACAATAGCTTA 57.670 33.333 0.00 0.00 0.00 3.09
4481 4948 7.831193 ACCATGAAAGAGTGATTACAATAGCTT 59.169 33.333 0.00 0.00 0.00 3.74
4482 4949 7.281774 CACCATGAAAGAGTGATTACAATAGCT 59.718 37.037 0.00 0.00 33.21 3.32
4483 4950 7.066284 ACACCATGAAAGAGTGATTACAATAGC 59.934 37.037 6.11 0.00 35.47 2.97
4484 4951 8.498054 ACACCATGAAAGAGTGATTACAATAG 57.502 34.615 6.11 0.00 35.47 1.73
4485 4952 8.321353 AGACACCATGAAAGAGTGATTACAATA 58.679 33.333 6.11 0.00 35.47 1.90
4486 4953 7.170965 AGACACCATGAAAGAGTGATTACAAT 58.829 34.615 6.11 0.00 35.47 2.71
4487 4954 6.533730 AGACACCATGAAAGAGTGATTACAA 58.466 36.000 6.11 0.00 35.47 2.41
4488 4955 6.114187 AGACACCATGAAAGAGTGATTACA 57.886 37.500 6.11 0.00 35.47 2.41
4501 4968 3.625853 TGGTTGAACAAAGACACCATGA 58.374 40.909 0.00 0.00 0.00 3.07
4502 4969 3.631686 TCTGGTTGAACAAAGACACCATG 59.368 43.478 0.00 0.00 0.00 3.66
4514 4981 5.596845 TGTAAAGGCAAATTCTGGTTGAAC 58.403 37.500 0.00 0.00 37.52 3.18
4546 5013 4.449743 CCAAAACCTACAGAATTCGTCGAA 59.550 41.667 10.61 10.61 0.00 3.71
4548 5015 3.744426 ACCAAAACCTACAGAATTCGTCG 59.256 43.478 0.00 0.00 0.00 5.12
4560 5027 7.114095 ACTAGAAACAGTCAAACCAAAACCTA 58.886 34.615 0.00 0.00 0.00 3.08
4569 5036 5.239525 AGCATTGGACTAGAAACAGTCAAAC 59.760 40.000 0.00 0.00 45.64 2.93
4607 5074 6.470235 CGTTCCAAATGCAAAGCTAATAGAAG 59.530 38.462 0.00 0.00 0.00 2.85
4621 5088 4.259930 GCAATAGAATTGCGTTCCAAATGC 60.260 41.667 8.70 0.00 43.70 3.56
4626 5093 2.682856 GAGGCAATAGAATTGCGTTCCA 59.317 45.455 17.75 0.00 45.78 3.53
4638 5114 3.616956 TGTCTGACAAGGAGGCAATAG 57.383 47.619 8.27 0.00 32.28 1.73
4642 5118 0.108585 GGTTGTCTGACAAGGAGGCA 59.891 55.000 22.61 0.00 39.00 4.75
4650 5126 4.009675 GGATATTTGCAGGTTGTCTGACA 58.990 43.478 6.36 6.36 46.18 3.58
4652 5128 4.299586 TGGATATTTGCAGGTTGTCTGA 57.700 40.909 0.00 0.00 46.18 3.27
4653 5129 6.713903 AGATATGGATATTTGCAGGTTGTCTG 59.286 38.462 0.00 0.00 46.03 3.51
4667 5149 8.874744 ATAGTTGCAAAAGCAGATATGGATAT 57.125 30.769 0.00 0.00 0.00 1.63
4689 5171 4.715520 ATTCATCAGCGCGTTTGTATAG 57.284 40.909 8.43 0.00 0.00 1.31
4693 5175 4.355543 AAATATTCATCAGCGCGTTTGT 57.644 36.364 8.43 0.00 0.00 2.83
4698 5180 3.058983 TGGCTTAAATATTCATCAGCGCG 60.059 43.478 0.00 0.00 0.00 6.86
4729 5211 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4731 5213 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4732 5214 4.891992 ATCTTATATTGTGGGACGGAGG 57.108 45.455 0.00 0.00 0.00 4.30
4733 5215 6.591750 ACTATCTTATATTGTGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
4734 5216 6.989155 AACTATCTTATATTGTGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
4735 5217 8.446599 AAAAACTATCTTATATTGTGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
4736 5218 9.104965 TGAAAAACTATCTTATATTGTGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
4739 5221 9.736023 GCTTGAAAAACTATCTTATATTGTGGG 57.264 33.333 0.00 0.00 0.00 4.61
4782 5264 9.973880 TCCCTACATCCCATAATATAAGATCAT 57.026 33.333 0.00 0.00 0.00 2.45
4783 5265 9.439461 CTCCCTACATCCCATAATATAAGATCA 57.561 37.037 0.00 0.00 0.00 2.92
4784 5266 9.440761 ACTCCCTACATCCCATAATATAAGATC 57.559 37.037 0.00 0.00 0.00 2.75
4786 5268 9.937876 CTACTCCCTACATCCCATAATATAAGA 57.062 37.037 0.00 0.00 0.00 2.10
4787 5269 9.716556 ACTACTCCCTACATCCCATAATATAAG 57.283 37.037 0.00 0.00 0.00 1.73
4791 5273 9.317827 GTTAACTACTCCCTACATCCCATAATA 57.682 37.037 0.00 0.00 0.00 0.98
4792 5274 7.792736 TGTTAACTACTCCCTACATCCCATAAT 59.207 37.037 7.22 0.00 0.00 1.28
4793 5275 7.134162 TGTTAACTACTCCCTACATCCCATAA 58.866 38.462 7.22 0.00 0.00 1.90
4794 5276 6.685541 TGTTAACTACTCCCTACATCCCATA 58.314 40.000 7.22 0.00 0.00 2.74
4795 5277 5.535029 TGTTAACTACTCCCTACATCCCAT 58.465 41.667 7.22 0.00 0.00 4.00
4796 5278 4.950361 TGTTAACTACTCCCTACATCCCA 58.050 43.478 7.22 0.00 0.00 4.37
4797 5279 5.601313 TCATGTTAACTACTCCCTACATCCC 59.399 44.000 7.22 0.00 0.00 3.85
4798 5280 6.726490 TCATGTTAACTACTCCCTACATCC 57.274 41.667 7.22 0.00 0.00 3.51
4816 5298 8.509690 CGAGCCAGATCAAATATTTATTCATGT 58.490 33.333 0.00 0.00 0.00 3.21
4817 5299 8.724229 TCGAGCCAGATCAAATATTTATTCATG 58.276 33.333 0.00 0.00 0.00 3.07
4818 5300 8.853077 TCGAGCCAGATCAAATATTTATTCAT 57.147 30.769 0.00 0.00 0.00 2.57
4819 5301 8.724229 CATCGAGCCAGATCAAATATTTATTCA 58.276 33.333 0.00 0.00 0.00 2.57
4820 5302 8.725148 ACATCGAGCCAGATCAAATATTTATTC 58.275 33.333 0.00 1.31 0.00 1.75
4821 5303 8.627208 ACATCGAGCCAGATCAAATATTTATT 57.373 30.769 0.00 0.00 0.00 1.40
4822 5304 8.627208 AACATCGAGCCAGATCAAATATTTAT 57.373 30.769 0.00 0.00 0.00 1.40
4823 5305 8.450578 AAACATCGAGCCAGATCAAATATTTA 57.549 30.769 0.00 0.00 0.00 1.40
4828 5310 3.629398 GGAAACATCGAGCCAGATCAAAT 59.371 43.478 0.00 0.00 0.00 2.32
4834 5316 0.391661 GCAGGAAACATCGAGCCAGA 60.392 55.000 0.00 0.00 0.00 3.86
4865 5347 7.566709 ACTCCAAAAACTTAAATACACGTACG 58.433 34.615 15.01 15.01 0.00 3.67
4866 5348 9.720667 AAACTCCAAAAACTTAAATACACGTAC 57.279 29.630 0.00 0.00 0.00 3.67
4899 5381 2.957402 TCCTCCAGCATGAAACTGTT 57.043 45.000 0.00 0.00 39.69 3.16
4903 5385 2.087646 GGACTTCCTCCAGCATGAAAC 58.912 52.381 0.00 0.00 39.69 2.78
4913 5395 0.106967 GGCTGAATGGGACTTCCTCC 60.107 60.000 0.00 0.00 38.55 4.30
4949 5437 3.630312 GGTCACTGCCTTGAACAGTTAAA 59.370 43.478 0.00 0.00 46.01 1.52
4961 5449 1.699634 TCTTTGCTTAGGTCACTGCCT 59.300 47.619 0.00 0.00 42.43 4.75
5010 5498 8.821894 AGCATGAGACGAGAGAATAAAATTTAC 58.178 33.333 0.00 0.00 0.00 2.01
5011 5499 8.948631 AGCATGAGACGAGAGAATAAAATTTA 57.051 30.769 0.00 0.00 0.00 1.40
5012 5500 7.856145 AGCATGAGACGAGAGAATAAAATTT 57.144 32.000 0.00 0.00 0.00 1.82
5013 5501 7.550551 TGAAGCATGAGACGAGAGAATAAAATT 59.449 33.333 0.00 0.00 0.00 1.82
5014 5502 7.044181 TGAAGCATGAGACGAGAGAATAAAAT 58.956 34.615 0.00 0.00 0.00 1.82
5015 5503 6.398095 TGAAGCATGAGACGAGAGAATAAAA 58.602 36.000 0.00 0.00 0.00 1.52
5016 5504 5.965922 TGAAGCATGAGACGAGAGAATAAA 58.034 37.500 0.00 0.00 0.00 1.40
5017 5505 5.582689 TGAAGCATGAGACGAGAGAATAA 57.417 39.130 0.00 0.00 0.00 1.40
5019 5507 4.081752 ACTTGAAGCATGAGACGAGAGAAT 60.082 41.667 0.00 0.00 0.00 2.40
5022 5510 2.922387 CACTTGAAGCATGAGACGAGAG 59.078 50.000 0.00 0.00 0.00 3.20
5023 5511 2.558359 TCACTTGAAGCATGAGACGAGA 59.442 45.455 0.00 0.00 0.00 4.04
5024 5512 2.922387 CTCACTTGAAGCATGAGACGAG 59.078 50.000 6.92 0.00 42.07 4.18
5027 5515 3.657634 TGACTCACTTGAAGCATGAGAC 58.342 45.455 16.72 12.09 42.07 3.36
5051 5540 6.032094 CAGGTTGATGCTGTATTTCAATGTC 58.968 40.000 0.00 0.00 32.48 3.06
5060 5549 2.481441 TCTCCCAGGTTGATGCTGTAT 58.519 47.619 0.00 0.00 0.00 2.29
5087 5576 3.516981 TTGACTCTATCAGCACTCTGC 57.483 47.619 0.00 0.00 45.46 4.26
5091 5580 5.426504 CTCCAATTTGACTCTATCAGCACT 58.573 41.667 0.00 0.00 38.99 4.40
5113 5602 2.836372 TCATGACATCTTCTGCTGACCT 59.164 45.455 0.00 0.00 0.00 3.85
5116 5605 5.941647 TCATTTTCATGACATCTTCTGCTGA 59.058 36.000 0.00 0.00 34.22 4.26
5178 5668 8.568794 TGTCATTTACCAACGAAAAATGTATCA 58.431 29.630 0.00 3.89 40.10 2.15
5179 5669 8.958175 TGTCATTTACCAACGAAAAATGTATC 57.042 30.769 0.00 1.99 40.10 2.24
5191 5681 5.221541 TGGGTGGATTTTGTCATTTACCAAC 60.222 40.000 0.00 0.00 33.53 3.77
5193 5683 4.483950 TGGGTGGATTTTGTCATTTACCA 58.516 39.130 0.00 0.00 0.00 3.25
5209 5699 5.581874 GCAATCTAAACATTTGATTGGGTGG 59.418 40.000 20.59 0.00 44.05 4.61
5210 5700 5.289193 CGCAATCTAAACATTTGATTGGGTG 59.711 40.000 23.06 8.67 46.51 4.61
5240 5730 1.538047 ACTGCGCATGATCTTTGGTT 58.462 45.000 12.24 0.00 0.00 3.67
5242 5732 2.642139 AAACTGCGCATGATCTTTGG 57.358 45.000 12.24 0.00 0.00 3.28
5244 5734 3.648339 ACAAAACTGCGCATGATCTTT 57.352 38.095 12.24 3.49 0.00 2.52
5258 5748 1.199097 CGCCCACAGGTCATACAAAAC 59.801 52.381 0.00 0.00 34.57 2.43
5284 5774 2.708593 GATTTATCACCCCCGCCCCC 62.709 65.000 0.00 0.00 0.00 5.40
5285 5775 1.228459 GATTTATCACCCCCGCCCC 60.228 63.158 0.00 0.00 0.00 5.80
5286 5776 1.003233 CTAGATTTATCACCCCCGCCC 59.997 57.143 0.00 0.00 0.00 6.13
5287 5777 1.003233 CCTAGATTTATCACCCCCGCC 59.997 57.143 0.00 0.00 0.00 6.13
5288 5778 1.975680 TCCTAGATTTATCACCCCCGC 59.024 52.381 0.00 0.00 0.00 6.13
5289 5779 2.028020 GCTCCTAGATTTATCACCCCCG 60.028 54.545 0.00 0.00 0.00 5.73
5290 5780 2.028020 CGCTCCTAGATTTATCACCCCC 60.028 54.545 0.00 0.00 0.00 5.40
5295 5785 6.483307 CCATTTTGTCGCTCCTAGATTTATCA 59.517 38.462 0.00 0.00 0.00 2.15
5299 5789 4.843728 TCCATTTTGTCGCTCCTAGATTT 58.156 39.130 0.00 0.00 0.00 2.17
5312 5802 1.732941 TCTACGCGCATCCATTTTGT 58.267 45.000 5.73 0.00 0.00 2.83
5317 5807 0.459899 TCAGTTCTACGCGCATCCAT 59.540 50.000 5.73 0.00 0.00 3.41
5326 5816 6.961554 GGTGAGCAAAAATAATCAGTTCTACG 59.038 38.462 0.00 0.00 0.00 3.51
5346 5836 9.658799 TTCTTATCAATTTCAGAGTTAGGTGAG 57.341 33.333 0.00 0.00 0.00 3.51
5363 5853 5.713792 TTCCGCACCAAATTTCTTATCAA 57.286 34.783 0.00 0.00 0.00 2.57
5375 5865 3.320673 AAAAGTGTTTTTCCGCACCAA 57.679 38.095 0.00 0.00 36.35 3.67
5381 5871 5.457473 AGCGAAATGTAAAAGTGTTTTTCCG 59.543 36.000 0.00 0.00 37.64 4.30
5403 5893 6.918022 GCATATATACCAAGGAAACAAACAGC 59.082 38.462 0.00 0.00 0.00 4.40
5411 5903 5.310594 AGCAGGAGCATATATACCAAGGAAA 59.689 40.000 0.00 0.00 45.49 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.