Multiple sequence alignment - TraesCS5B01G415600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G415600 chr5B 100.000 3288 0 0 1 3288 589893273 589896560 0.000000e+00 6072.0
1 TraesCS5B01G415600 chr5B 87.155 1339 94 34 998 2290 589998351 589999657 0.000000e+00 1448.0
2 TraesCS5B01G415600 chr5B 86.701 970 85 21 1366 2294 589677262 589678228 0.000000e+00 1037.0
3 TraesCS5B01G415600 chr5B 82.920 363 57 5 112 471 693684476 693684836 4.090000e-84 322.0
4 TraesCS5B01G415600 chr5B 88.722 266 18 6 994 1259 589676844 589677097 6.850000e-82 315.0
5 TraesCS5B01G415600 chr5B 77.163 289 36 17 712 999 589676530 589676789 1.230000e-29 141.0
6 TraesCS5B01G415600 chr5D 89.727 2385 140 42 577 2940 481302546 481304846 0.000000e+00 2950.0
7 TraesCS5B01G415600 chr5D 84.230 1357 100 32 1000 2294 481183673 481184977 0.000000e+00 1216.0
8 TraesCS5B01G415600 chr5D 87.894 1016 72 21 1303 2290 481425928 481426920 0.000000e+00 1147.0
9 TraesCS5B01G415600 chr5D 90.909 275 15 5 999 1272 481425508 481425773 8.670000e-96 361.0
10 TraesCS5B01G415600 chr5D 89.680 281 19 3 2949 3229 481306300 481306570 1.880000e-92 350.0
11 TraesCS5B01G415600 chr5D 81.034 174 7 10 2459 2632 481185229 481185376 7.460000e-22 115.0
12 TraesCS5B01G415600 chr5D 82.500 120 12 7 2459 2574 481164471 481164585 2.700000e-16 97.1
13 TraesCS5B01G415600 chr5D 83.178 107 15 1 1 107 398126679 398126576 9.710000e-16 95.3
14 TraesCS5B01G415600 chr5A 89.454 1593 102 23 890 2455 600361372 600362925 0.000000e+00 1951.0
15 TraesCS5B01G415600 chr5A 85.773 1462 115 36 1000 2401 600236884 600238312 0.000000e+00 1461.0
16 TraesCS5B01G415600 chr5A 87.510 1297 92 26 1000 2290 600438333 600439565 0.000000e+00 1434.0
17 TraesCS5B01G415600 chr5A 87.037 324 38 2 2700 3023 600363243 600363562 2.410000e-96 363.0
18 TraesCS5B01G415600 chr5A 97.315 149 2 1 2503 2651 600362941 600363087 5.450000e-63 252.0
19 TraesCS5B01G415600 chr5A 87.413 143 9 6 2459 2599 600238440 600238575 4.390000e-34 156.0
20 TraesCS5B01G415600 chr5A 87.850 107 13 0 712 818 600236566 600236672 3.440000e-25 126.0
21 TraesCS5B01G415600 chr5A 77.005 187 23 15 605 773 600361162 600361346 4.520000e-14 89.8
22 TraesCS5B01G415600 chr4B 83.754 714 81 17 1007 1714 663942170 663941486 0.000000e+00 643.0
23 TraesCS5B01G415600 chr4D 85.177 452 52 5 1836 2276 506482766 506483213 1.800000e-122 449.0
24 TraesCS5B01G415600 chr4D 80.244 410 77 4 111 518 349904365 349903958 4.120000e-79 305.0
25 TraesCS5B01G415600 chr4D 82.036 334 59 1 114 446 488417519 488417852 1.930000e-72 283.0
26 TraesCS5B01G415600 chr4D 85.985 264 30 4 1004 1267 506470753 506471009 3.230000e-70 276.0
27 TraesCS5B01G415600 chr4D 85.864 191 12 5 1657 1838 506471048 506471232 4.330000e-44 189.0
28 TraesCS5B01G415600 chr1B 82.477 428 70 5 116 542 22399021 22398598 1.440000e-98 370.0
29 TraesCS5B01G415600 chr1B 81.755 433 74 5 111 542 22607132 22606704 1.120000e-94 357.0
30 TraesCS5B01G415600 chr2D 80.831 433 71 8 113 538 424653375 424653802 2.450000e-86 329.0
31 TraesCS5B01G415600 chr2D 80.392 408 75 3 116 522 61450676 61450273 4.120000e-79 305.0
32 TraesCS5B01G415600 chr3A 80.396 454 70 11 117 569 468613055 468612620 8.800000e-86 327.0
33 TraesCS5B01G415600 chr3B 78.589 397 75 8 175 568 805132571 805132182 1.510000e-63 254.0
34 TraesCS5B01G415600 chr3B 77.828 221 46 3 117 335 648899386 648899605 2.060000e-27 134.0
35 TraesCS5B01G415600 chr2A 81.731 104 16 3 1 102 765881395 765881293 2.100000e-12 84.2
36 TraesCS5B01G415600 chr2B 78.512 121 20 6 109 225 214590483 214590365 1.270000e-09 75.0
37 TraesCS5B01G415600 chr4A 100.000 28 0 0 4 31 589103369 589103342 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G415600 chr5B 589893273 589896560 3287 False 6072.000000 6072 100.000000 1 3288 1 chr5B.!!$F1 3287
1 TraesCS5B01G415600 chr5B 589998351 589999657 1306 False 1448.000000 1448 87.155000 998 2290 1 chr5B.!!$F2 1292
2 TraesCS5B01G415600 chr5B 589676530 589678228 1698 False 497.666667 1037 84.195333 712 2294 3 chr5B.!!$F4 1582
3 TraesCS5B01G415600 chr5D 481302546 481306570 4024 False 1650.000000 2950 89.703500 577 3229 2 chr5D.!!$F3 2652
4 TraesCS5B01G415600 chr5D 481425508 481426920 1412 False 754.000000 1147 89.401500 999 2290 2 chr5D.!!$F4 1291
5 TraesCS5B01G415600 chr5D 481183673 481185376 1703 False 665.500000 1216 82.632000 1000 2632 2 chr5D.!!$F2 1632
6 TraesCS5B01G415600 chr5A 600438333 600439565 1232 False 1434.000000 1434 87.510000 1000 2290 1 chr5A.!!$F1 1290
7 TraesCS5B01G415600 chr5A 600361162 600363562 2400 False 663.950000 1951 87.702750 605 3023 4 chr5A.!!$F3 2418
8 TraesCS5B01G415600 chr5A 600236566 600238575 2009 False 581.000000 1461 87.012000 712 2599 3 chr5A.!!$F2 1887
9 TraesCS5B01G415600 chr4B 663941486 663942170 684 True 643.000000 643 83.754000 1007 1714 1 chr4B.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.032678 CCTATAGGACCAGCGCACAG 59.967 60.0 14.11 0.0 37.39 3.66 F
164 165 0.036010 AGCGCACAGAGCATTAACCT 60.036 50.0 11.47 0.0 46.13 3.50 F
357 358 0.038159 GGATGGGGATAGAACGCGAG 60.038 60.0 15.93 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2401 0.100503 AAGTTGTTGCCGTTCACTGC 59.899 50.0 0.00 0.0 0.00 4.40 R
2135 2524 0.108329 AAGGTGACGGCCGTTGATAG 60.108 55.0 34.65 0.0 0.00 2.08 R
2297 2701 0.036858 GAGCCGAAGAGTTTCCTGCT 60.037 55.0 0.00 0.0 39.35 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.578020 CAGTATAACGAACGCCAGAAATAA 57.422 37.500 0.00 0.00 0.00 1.40
24 25 7.173863 CAGTATAACGAACGCCAGAAATAAT 57.826 36.000 0.00 0.00 0.00 1.28
25 26 8.289440 CAGTATAACGAACGCCAGAAATAATA 57.711 34.615 0.00 0.00 0.00 0.98
26 27 8.757789 CAGTATAACGAACGCCAGAAATAATAA 58.242 33.333 0.00 0.00 0.00 1.40
27 28 9.316730 AGTATAACGAACGCCAGAAATAATAAA 57.683 29.630 0.00 0.00 0.00 1.40
28 29 9.919348 GTATAACGAACGCCAGAAATAATAAAA 57.081 29.630 0.00 0.00 0.00 1.52
32 33 9.843334 AACGAACGCCAGAAATAATAAAAATAA 57.157 25.926 0.00 0.00 0.00 1.40
33 34 9.281075 ACGAACGCCAGAAATAATAAAAATAAC 57.719 29.630 0.00 0.00 0.00 1.89
34 35 9.279904 CGAACGCCAGAAATAATAAAAATAACA 57.720 29.630 0.00 0.00 0.00 2.41
47 48 5.385509 AAAAATAACATTCAGGTCCGTGG 57.614 39.130 0.00 0.00 0.00 4.94
48 49 3.992943 AATAACATTCAGGTCCGTGGA 57.007 42.857 0.00 0.00 0.00 4.02
49 50 2.754946 TAACATTCAGGTCCGTGGAC 57.245 50.000 10.65 10.65 43.87 4.02
57 58 2.976356 GTCCGTGGACCACCTACC 59.024 66.667 19.11 0.97 39.08 3.18
58 59 2.677524 TCCGTGGACCACCTACCG 60.678 66.667 19.11 6.75 37.04 4.02
59 60 2.677524 CCGTGGACCACCTACCGA 60.678 66.667 19.11 0.00 37.04 4.69
60 61 2.570181 CGTGGACCACCTACCGAC 59.430 66.667 19.11 0.00 37.04 4.79
61 62 2.570181 GTGGACCACCTACCGACG 59.430 66.667 14.16 0.00 37.04 5.12
62 63 1.973281 GTGGACCACCTACCGACGA 60.973 63.158 14.16 0.00 37.04 4.20
63 64 1.000521 TGGACCACCTACCGACGAT 60.001 57.895 0.00 0.00 37.04 3.73
64 65 0.612732 TGGACCACCTACCGACGATT 60.613 55.000 0.00 0.00 37.04 3.34
65 66 1.340893 TGGACCACCTACCGACGATTA 60.341 52.381 0.00 0.00 37.04 1.75
66 67 1.066152 GGACCACCTACCGACGATTAC 59.934 57.143 0.00 0.00 0.00 1.89
67 68 1.745087 GACCACCTACCGACGATTACA 59.255 52.381 0.00 0.00 0.00 2.41
68 69 2.164219 GACCACCTACCGACGATTACAA 59.836 50.000 0.00 0.00 0.00 2.41
69 70 2.165030 ACCACCTACCGACGATTACAAG 59.835 50.000 0.00 0.00 0.00 3.16
70 71 2.190981 CACCTACCGACGATTACAAGC 58.809 52.381 0.00 0.00 0.00 4.01
71 72 1.820519 ACCTACCGACGATTACAAGCA 59.179 47.619 0.00 0.00 0.00 3.91
72 73 2.190981 CCTACCGACGATTACAAGCAC 58.809 52.381 0.00 0.00 0.00 4.40
73 74 2.159282 CCTACCGACGATTACAAGCACT 60.159 50.000 0.00 0.00 0.00 4.40
74 75 1.710013 ACCGACGATTACAAGCACTG 58.290 50.000 0.00 0.00 0.00 3.66
75 76 0.999406 CCGACGATTACAAGCACTGG 59.001 55.000 0.00 0.00 0.00 4.00
76 77 0.999406 CGACGATTACAAGCACTGGG 59.001 55.000 0.00 0.00 0.00 4.45
77 78 1.369625 GACGATTACAAGCACTGGGG 58.630 55.000 0.00 0.00 0.00 4.96
78 79 0.676782 ACGATTACAAGCACTGGGGC 60.677 55.000 0.00 0.00 0.00 5.80
79 80 1.705337 CGATTACAAGCACTGGGGCG 61.705 60.000 0.00 0.00 39.27 6.13
80 81 0.392461 GATTACAAGCACTGGGGCGA 60.392 55.000 0.00 0.00 39.27 5.54
81 82 0.392998 ATTACAAGCACTGGGGCGAG 60.393 55.000 0.00 0.00 39.27 5.03
82 83 1.476845 TTACAAGCACTGGGGCGAGA 61.477 55.000 0.00 0.00 39.27 4.04
83 84 2.167398 TACAAGCACTGGGGCGAGAC 62.167 60.000 0.00 0.00 39.27 3.36
84 85 4.379243 AAGCACTGGGGCGAGACG 62.379 66.667 0.00 0.00 39.27 4.18
102 103 2.280389 CTGGCGCGCTACCATCAT 60.280 61.111 32.29 0.00 36.36 2.45
103 104 2.280119 TGGCGCGCTACCATCATC 60.280 61.111 32.29 11.34 30.29 2.92
104 105 2.280119 GGCGCGCTACCATCATCA 60.280 61.111 32.29 0.00 0.00 3.07
105 106 2.598632 GGCGCGCTACCATCATCAC 61.599 63.158 32.29 5.31 0.00 3.06
106 107 2.598632 GCGCGCTACCATCATCACC 61.599 63.158 26.67 0.00 0.00 4.02
107 108 1.227234 CGCGCTACCATCATCACCA 60.227 57.895 5.56 0.00 0.00 4.17
108 109 0.809636 CGCGCTACCATCATCACCAA 60.810 55.000 5.56 0.00 0.00 3.67
109 110 0.657840 GCGCTACCATCATCACCAAC 59.342 55.000 0.00 0.00 0.00 3.77
110 111 2.011548 GCGCTACCATCATCACCAACA 61.012 52.381 0.00 0.00 0.00 3.33
111 112 2.564771 CGCTACCATCATCACCAACAT 58.435 47.619 0.00 0.00 0.00 2.71
112 113 2.545526 CGCTACCATCATCACCAACATC 59.454 50.000 0.00 0.00 0.00 3.06
113 114 2.545526 GCTACCATCATCACCAACATCG 59.454 50.000 0.00 0.00 0.00 3.84
114 115 3.741075 GCTACCATCATCACCAACATCGA 60.741 47.826 0.00 0.00 0.00 3.59
115 116 2.910199 ACCATCATCACCAACATCGAG 58.090 47.619 0.00 0.00 0.00 4.04
116 117 2.501316 ACCATCATCACCAACATCGAGA 59.499 45.455 0.00 0.00 0.00 4.04
117 118 3.055167 ACCATCATCACCAACATCGAGAA 60.055 43.478 0.00 0.00 0.00 2.87
118 119 3.558829 CCATCATCACCAACATCGAGAAG 59.441 47.826 0.00 0.00 0.00 2.85
119 120 3.961480 TCATCACCAACATCGAGAAGT 57.039 42.857 0.00 0.00 0.00 3.01
120 121 4.271696 TCATCACCAACATCGAGAAGTT 57.728 40.909 0.00 0.00 0.00 2.66
121 122 3.996363 TCATCACCAACATCGAGAAGTTG 59.004 43.478 16.71 16.71 43.51 3.16
124 125 3.955429 CAACATCGAGAAGTTGGCG 57.045 52.632 16.15 0.00 40.97 5.69
125 126 1.148310 CAACATCGAGAAGTTGGCGT 58.852 50.000 16.15 0.00 40.97 5.68
126 127 1.136252 CAACATCGAGAAGTTGGCGTG 60.136 52.381 16.15 0.00 40.97 5.34
127 128 1.291877 ACATCGAGAAGTTGGCGTGC 61.292 55.000 0.00 0.00 0.00 5.34
128 129 1.016130 CATCGAGAAGTTGGCGTGCT 61.016 55.000 0.00 0.00 0.00 4.40
129 130 0.530744 ATCGAGAAGTTGGCGTGCTA 59.469 50.000 0.00 0.00 0.00 3.49
130 131 0.315886 TCGAGAAGTTGGCGTGCTAA 59.684 50.000 0.00 0.00 0.00 3.09
131 132 0.716108 CGAGAAGTTGGCGTGCTAAG 59.284 55.000 0.00 0.00 0.00 2.18
132 133 1.668919 CGAGAAGTTGGCGTGCTAAGA 60.669 52.381 0.00 0.00 0.00 2.10
133 134 1.727335 GAGAAGTTGGCGTGCTAAGAC 59.273 52.381 0.00 0.00 0.00 3.01
134 135 0.796927 GAAGTTGGCGTGCTAAGACC 59.203 55.000 0.00 0.00 0.00 3.85
135 136 0.605589 AAGTTGGCGTGCTAAGACCC 60.606 55.000 0.00 0.00 0.00 4.46
136 137 1.003718 GTTGGCGTGCTAAGACCCT 60.004 57.895 0.00 0.00 0.00 4.34
137 138 0.248289 GTTGGCGTGCTAAGACCCTA 59.752 55.000 0.00 0.00 0.00 3.53
138 139 1.134491 GTTGGCGTGCTAAGACCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
139 140 2.076207 TGGCGTGCTAAGACCCTATA 57.924 50.000 0.00 0.00 0.00 1.31
140 141 1.961394 TGGCGTGCTAAGACCCTATAG 59.039 52.381 0.00 0.00 0.00 1.31
141 142 1.272769 GGCGTGCTAAGACCCTATAGG 59.727 57.143 12.27 12.27 43.78 2.57
142 143 2.236766 GCGTGCTAAGACCCTATAGGA 58.763 52.381 21.07 0.00 39.89 2.94
143 144 2.030096 GCGTGCTAAGACCCTATAGGAC 60.030 54.545 21.07 13.25 39.89 3.85
144 145 2.557490 CGTGCTAAGACCCTATAGGACC 59.443 54.545 21.07 10.92 37.23 4.46
145 146 3.573695 GTGCTAAGACCCTATAGGACCA 58.426 50.000 21.07 4.80 39.89 4.02
146 147 3.574826 GTGCTAAGACCCTATAGGACCAG 59.425 52.174 21.07 13.31 39.89 4.00
147 148 2.563620 GCTAAGACCCTATAGGACCAGC 59.436 54.545 21.07 18.00 39.89 4.85
148 149 1.705873 AAGACCCTATAGGACCAGCG 58.294 55.000 21.07 4.64 39.89 5.18
149 150 0.828343 AGACCCTATAGGACCAGCGC 60.828 60.000 21.07 0.00 39.89 5.92
150 151 1.075525 ACCCTATAGGACCAGCGCA 60.076 57.895 21.07 0.00 39.89 6.09
151 152 1.367840 CCCTATAGGACCAGCGCAC 59.632 63.158 21.07 0.00 38.24 5.34
152 153 1.399744 CCCTATAGGACCAGCGCACA 61.400 60.000 21.07 0.00 38.24 4.57
153 154 0.032678 CCTATAGGACCAGCGCACAG 59.967 60.000 14.11 0.00 37.39 3.66
154 155 1.032794 CTATAGGACCAGCGCACAGA 58.967 55.000 11.47 0.00 0.00 3.41
155 156 1.000827 CTATAGGACCAGCGCACAGAG 60.001 57.143 11.47 0.00 0.00 3.35
156 157 2.303549 ATAGGACCAGCGCACAGAGC 62.304 60.000 11.47 0.00 40.87 4.09
157 158 4.687215 GGACCAGCGCACAGAGCA 62.687 66.667 11.47 0.00 46.13 4.26
158 159 2.435586 GACCAGCGCACAGAGCAT 60.436 61.111 11.47 0.00 46.13 3.79
159 160 2.033141 ACCAGCGCACAGAGCATT 59.967 55.556 11.47 0.00 46.13 3.56
160 161 0.740868 GACCAGCGCACAGAGCATTA 60.741 55.000 11.47 0.00 46.13 1.90
161 162 0.321564 ACCAGCGCACAGAGCATTAA 60.322 50.000 11.47 0.00 46.13 1.40
162 163 0.097674 CCAGCGCACAGAGCATTAAC 59.902 55.000 11.47 0.00 46.13 2.01
163 164 0.097674 CAGCGCACAGAGCATTAACC 59.902 55.000 11.47 0.00 46.13 2.85
164 165 0.036010 AGCGCACAGAGCATTAACCT 60.036 50.000 11.47 0.00 46.13 3.50
165 166 0.804989 GCGCACAGAGCATTAACCTT 59.195 50.000 0.30 0.00 46.13 3.50
166 167 1.200020 GCGCACAGAGCATTAACCTTT 59.800 47.619 0.30 0.00 46.13 3.11
167 168 2.418628 GCGCACAGAGCATTAACCTTTA 59.581 45.455 0.30 0.00 46.13 1.85
168 169 3.065371 GCGCACAGAGCATTAACCTTTAT 59.935 43.478 0.30 0.00 46.13 1.40
169 170 4.786609 GCGCACAGAGCATTAACCTTTATC 60.787 45.833 0.30 0.00 46.13 1.75
170 171 4.332543 CGCACAGAGCATTAACCTTTATCA 59.667 41.667 0.00 0.00 46.13 2.15
171 172 5.008019 CGCACAGAGCATTAACCTTTATCAT 59.992 40.000 0.00 0.00 46.13 2.45
172 173 6.458751 CGCACAGAGCATTAACCTTTATCATT 60.459 38.462 0.00 0.00 46.13 2.57
173 174 6.694411 GCACAGAGCATTAACCTTTATCATTG 59.306 38.462 0.00 0.00 44.79 2.82
174 175 7.415541 GCACAGAGCATTAACCTTTATCATTGA 60.416 37.037 0.00 0.00 44.79 2.57
175 176 8.461222 CACAGAGCATTAACCTTTATCATTGAA 58.539 33.333 0.00 0.00 0.00 2.69
176 177 8.680903 ACAGAGCATTAACCTTTATCATTGAAG 58.319 33.333 0.00 0.00 0.00 3.02
177 178 8.896744 CAGAGCATTAACCTTTATCATTGAAGA 58.103 33.333 0.00 0.00 0.00 2.87
178 179 9.466497 AGAGCATTAACCTTTATCATTGAAGAA 57.534 29.630 0.00 0.00 0.00 2.52
181 182 9.860898 GCATTAACCTTTATCATTGAAGAAAGT 57.139 29.630 16.89 7.60 0.00 2.66
184 185 7.745620 AACCTTTATCATTGAAGAAAGTCGT 57.254 32.000 16.89 9.90 0.00 4.34
185 186 8.842358 AACCTTTATCATTGAAGAAAGTCGTA 57.158 30.769 16.89 0.00 0.00 3.43
186 187 8.480643 ACCTTTATCATTGAAGAAAGTCGTAG 57.519 34.615 16.89 8.56 0.00 3.51
187 188 8.311836 ACCTTTATCATTGAAGAAAGTCGTAGA 58.688 33.333 16.89 0.00 0.00 2.59
188 189 9.319143 CCTTTATCATTGAAGAAAGTCGTAGAT 57.681 33.333 16.89 0.00 40.67 1.98
190 191 8.561932 TTATCATTGAAGAAAGTCGTAGATCG 57.438 34.615 0.00 0.00 40.67 3.69
191 192 5.340803 TCATTGAAGAAAGTCGTAGATCGG 58.659 41.667 0.00 0.00 40.67 4.18
192 193 5.124936 TCATTGAAGAAAGTCGTAGATCGGA 59.875 40.000 0.00 0.00 40.67 4.55
193 194 5.381174 TTGAAGAAAGTCGTAGATCGGAA 57.619 39.130 0.00 0.00 40.67 4.30
194 195 4.982999 TGAAGAAAGTCGTAGATCGGAAG 58.017 43.478 0.00 0.00 40.67 3.46
195 196 4.142447 TGAAGAAAGTCGTAGATCGGAAGG 60.142 45.833 0.00 0.00 40.67 3.46
196 197 3.618351 AGAAAGTCGTAGATCGGAAGGA 58.382 45.455 0.00 0.00 40.67 3.36
197 198 4.208746 AGAAAGTCGTAGATCGGAAGGAT 58.791 43.478 0.00 0.00 40.67 3.24
208 209 5.640189 GATCGGAAGGATCGAACCTATAA 57.360 43.478 15.40 1.80 42.02 0.98
209 210 6.022163 GATCGGAAGGATCGAACCTATAAA 57.978 41.667 15.40 2.17 42.02 1.40
210 211 5.192327 TCGGAAGGATCGAACCTATAAAC 57.808 43.478 15.40 4.76 39.62 2.01
211 212 4.646040 TCGGAAGGATCGAACCTATAAACA 59.354 41.667 15.40 0.00 39.62 2.83
212 213 4.743644 CGGAAGGATCGAACCTATAAACAC 59.256 45.833 15.40 0.24 39.62 3.32
213 214 5.055144 GGAAGGATCGAACCTATAAACACC 58.945 45.833 15.40 6.56 39.62 4.16
214 215 4.684484 AGGATCGAACCTATAAACACCC 57.316 45.455 13.33 0.00 38.65 4.61
215 216 4.035112 AGGATCGAACCTATAAACACCCA 58.965 43.478 13.33 0.00 38.65 4.51
216 217 4.472108 AGGATCGAACCTATAAACACCCAA 59.528 41.667 13.33 0.00 38.65 4.12
217 218 5.045432 AGGATCGAACCTATAAACACCCAAA 60.045 40.000 13.33 0.00 38.65 3.28
218 219 5.065602 GGATCGAACCTATAAACACCCAAAC 59.934 44.000 4.14 0.00 0.00 2.93
219 220 3.995705 TCGAACCTATAAACACCCAAACG 59.004 43.478 0.00 0.00 0.00 3.60
220 221 3.995705 CGAACCTATAAACACCCAAACGA 59.004 43.478 0.00 0.00 0.00 3.85
221 222 4.451774 CGAACCTATAAACACCCAAACGAA 59.548 41.667 0.00 0.00 0.00 3.85
222 223 5.390145 CGAACCTATAAACACCCAAACGAAG 60.390 44.000 0.00 0.00 0.00 3.79
223 224 5.231702 ACCTATAAACACCCAAACGAAGA 57.768 39.130 0.00 0.00 0.00 2.87
224 225 4.999311 ACCTATAAACACCCAAACGAAGAC 59.001 41.667 0.00 0.00 0.00 3.01
225 226 4.998672 CCTATAAACACCCAAACGAAGACA 59.001 41.667 0.00 0.00 0.00 3.41
226 227 5.470777 CCTATAAACACCCAAACGAAGACAA 59.529 40.000 0.00 0.00 0.00 3.18
227 228 6.150474 CCTATAAACACCCAAACGAAGACAAT 59.850 38.462 0.00 0.00 0.00 2.71
228 229 4.729227 AAACACCCAAACGAAGACAATT 57.271 36.364 0.00 0.00 0.00 2.32
229 230 3.708563 ACACCCAAACGAAGACAATTG 57.291 42.857 3.24 3.24 0.00 2.32
230 231 3.283751 ACACCCAAACGAAGACAATTGA 58.716 40.909 13.59 0.00 0.00 2.57
231 232 3.697045 ACACCCAAACGAAGACAATTGAA 59.303 39.130 13.59 0.00 0.00 2.69
232 233 4.202010 ACACCCAAACGAAGACAATTGAAG 60.202 41.667 13.59 0.97 0.00 3.02
233 234 4.036262 CACCCAAACGAAGACAATTGAAGA 59.964 41.667 13.59 0.00 0.00 2.87
234 235 4.642885 ACCCAAACGAAGACAATTGAAGAA 59.357 37.500 13.59 0.00 0.00 2.52
235 236 4.976116 CCCAAACGAAGACAATTGAAGAAC 59.024 41.667 13.59 0.00 0.00 3.01
236 237 5.449862 CCCAAACGAAGACAATTGAAGAACA 60.450 40.000 13.59 0.00 0.00 3.18
237 238 5.682862 CCAAACGAAGACAATTGAAGAACAG 59.317 40.000 13.59 0.00 0.00 3.16
238 239 6.458206 CCAAACGAAGACAATTGAAGAACAGA 60.458 38.462 13.59 0.00 0.00 3.41
239 240 6.867662 AACGAAGACAATTGAAGAACAGAT 57.132 33.333 13.59 0.00 0.00 2.90
240 241 6.867662 ACGAAGACAATTGAAGAACAGATT 57.132 33.333 13.59 0.00 0.00 2.40
241 242 6.892691 ACGAAGACAATTGAAGAACAGATTC 58.107 36.000 13.59 0.00 34.78 2.52
242 243 6.483307 ACGAAGACAATTGAAGAACAGATTCA 59.517 34.615 13.59 0.00 37.29 2.57
244 245 7.857389 CGAAGACAATTGAAGAACAGATTCAAA 59.143 33.333 13.59 0.00 46.52 2.69
245 246 9.688592 GAAGACAATTGAAGAACAGATTCAAAT 57.311 29.630 13.59 0.00 46.52 2.32
252 253 9.690913 ATTGAAGAACAGATTCAAATAGATCCA 57.309 29.630 5.33 0.00 46.52 3.41
253 254 8.498054 TGAAGAACAGATTCAAATAGATCCAC 57.502 34.615 0.00 0.00 37.29 4.02
254 255 7.554118 TGAAGAACAGATTCAAATAGATCCACC 59.446 37.037 0.00 0.00 37.29 4.61
255 256 6.051717 AGAACAGATTCAAATAGATCCACCG 58.948 40.000 0.00 0.00 37.29 4.94
256 257 5.614324 ACAGATTCAAATAGATCCACCGA 57.386 39.130 0.00 0.00 0.00 4.69
257 258 5.989477 ACAGATTCAAATAGATCCACCGAA 58.011 37.500 0.00 0.00 0.00 4.30
258 259 6.414732 ACAGATTCAAATAGATCCACCGAAA 58.585 36.000 0.00 0.00 0.00 3.46
259 260 6.884295 ACAGATTCAAATAGATCCACCGAAAA 59.116 34.615 0.00 0.00 0.00 2.29
260 261 7.148239 ACAGATTCAAATAGATCCACCGAAAAC 60.148 37.037 0.00 0.00 0.00 2.43
261 262 5.890424 TTCAAATAGATCCACCGAAAACC 57.110 39.130 0.00 0.00 0.00 3.27
262 263 4.912586 TCAAATAGATCCACCGAAAACCA 58.087 39.130 0.00 0.00 0.00 3.67
263 264 4.941263 TCAAATAGATCCACCGAAAACCAG 59.059 41.667 0.00 0.00 0.00 4.00
264 265 2.396590 TAGATCCACCGAAAACCAGC 57.603 50.000 0.00 0.00 0.00 4.85
265 266 0.400213 AGATCCACCGAAAACCAGCA 59.600 50.000 0.00 0.00 0.00 4.41
266 267 0.521735 GATCCACCGAAAACCAGCAC 59.478 55.000 0.00 0.00 0.00 4.40
267 268 0.893727 ATCCACCGAAAACCAGCACC 60.894 55.000 0.00 0.00 0.00 5.01
268 269 2.637025 CACCGAAAACCAGCACCG 59.363 61.111 0.00 0.00 0.00 4.94
269 270 1.890041 CACCGAAAACCAGCACCGA 60.890 57.895 0.00 0.00 0.00 4.69
270 271 1.890510 ACCGAAAACCAGCACCGAC 60.891 57.895 0.00 0.00 0.00 4.79
271 272 2.613506 CCGAAAACCAGCACCGACC 61.614 63.158 0.00 0.00 0.00 4.79
272 273 2.943653 GAAAACCAGCACCGACCG 59.056 61.111 0.00 0.00 0.00 4.79
273 274 1.595929 GAAAACCAGCACCGACCGA 60.596 57.895 0.00 0.00 0.00 4.69
274 275 1.153127 AAAACCAGCACCGACCGAA 60.153 52.632 0.00 0.00 0.00 4.30
275 276 0.536460 AAAACCAGCACCGACCGAAT 60.536 50.000 0.00 0.00 0.00 3.34
276 277 0.953960 AAACCAGCACCGACCGAATC 60.954 55.000 0.00 0.00 0.00 2.52
277 278 2.511600 CCAGCACCGACCGAATCC 60.512 66.667 0.00 0.00 0.00 3.01
278 279 2.579201 CAGCACCGACCGAATCCT 59.421 61.111 0.00 0.00 0.00 3.24
279 280 1.811266 CAGCACCGACCGAATCCTG 60.811 63.158 0.00 0.00 0.00 3.86
280 281 3.195698 GCACCGACCGAATCCTGC 61.196 66.667 0.00 0.00 0.00 4.85
281 282 2.885644 CACCGACCGAATCCTGCG 60.886 66.667 0.00 0.00 0.00 5.18
282 283 3.066190 ACCGACCGAATCCTGCGA 61.066 61.111 0.00 0.00 0.00 5.10
283 284 2.278857 CCGACCGAATCCTGCGAG 60.279 66.667 0.00 0.00 0.00 5.03
284 285 2.771639 CCGACCGAATCCTGCGAGA 61.772 63.158 0.00 0.00 0.00 4.04
285 286 1.360551 CGACCGAATCCTGCGAGAT 59.639 57.895 0.00 0.00 0.00 2.75
286 287 0.661780 CGACCGAATCCTGCGAGATC 60.662 60.000 0.00 0.00 0.00 2.75
287 288 0.319125 GACCGAATCCTGCGAGATCC 60.319 60.000 0.00 0.00 0.00 3.36
288 289 1.372251 CCGAATCCTGCGAGATCCG 60.372 63.158 0.00 0.00 42.21 4.18
289 290 1.654774 CGAATCCTGCGAGATCCGA 59.345 57.895 7.64 0.00 41.76 4.55
290 291 0.242286 CGAATCCTGCGAGATCCGAT 59.758 55.000 7.64 0.00 41.76 4.18
291 292 1.707632 GAATCCTGCGAGATCCGATG 58.292 55.000 7.64 0.30 41.76 3.84
292 293 0.319728 AATCCTGCGAGATCCGATGG 59.680 55.000 7.64 7.91 41.76 3.51
293 294 0.540597 ATCCTGCGAGATCCGATGGA 60.541 55.000 14.78 14.78 42.21 3.41
294 295 1.175347 TCCTGCGAGATCCGATGGAG 61.175 60.000 7.64 0.00 41.76 3.86
295 296 1.175347 CCTGCGAGATCCGATGGAGA 61.175 60.000 7.64 0.00 41.76 3.71
296 297 0.039617 CTGCGAGATCCGATGGAGAC 60.040 60.000 7.64 0.00 41.76 3.36
297 298 0.751643 TGCGAGATCCGATGGAGACA 60.752 55.000 7.64 0.00 41.76 3.41
298 299 0.318275 GCGAGATCCGATGGAGACAC 60.318 60.000 7.64 0.00 40.72 3.67
299 300 3.897175 GCGAGATCCGATGGAGACACG 62.897 61.905 7.64 7.72 40.72 4.49
309 310 2.430921 GAGACACGCCTCCACACG 60.431 66.667 0.00 0.00 0.00 4.49
310 311 3.208884 GAGACACGCCTCCACACGT 62.209 63.158 0.00 0.00 44.75 4.49
311 312 2.733593 GACACGCCTCCACACGTC 60.734 66.667 0.00 0.00 41.32 4.34
312 313 4.295119 ACACGCCTCCACACGTCC 62.295 66.667 0.00 0.00 41.32 4.79
313 314 3.991051 CACGCCTCCACACGTCCT 61.991 66.667 0.00 0.00 41.32 3.85
314 315 3.681835 ACGCCTCCACACGTCCTC 61.682 66.667 0.00 0.00 38.28 3.71
315 316 4.436998 CGCCTCCACACGTCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
316 317 4.436998 GCCTCCACACGTCCTCCG 62.437 72.222 0.00 0.00 44.03 4.63
317 318 2.675423 CCTCCACACGTCCTCCGA 60.675 66.667 0.00 0.00 40.70 4.55
318 319 2.567049 CTCCACACGTCCTCCGAC 59.433 66.667 0.00 0.00 40.70 4.79
326 327 2.708255 GTCCTCCGACGACGCTAG 59.292 66.667 0.64 1.46 38.29 3.42
327 328 1.812922 GTCCTCCGACGACGCTAGA 60.813 63.158 0.64 0.00 38.29 2.43
328 329 1.812922 TCCTCCGACGACGCTAGAC 60.813 63.158 0.64 0.00 38.29 2.59
338 339 2.655364 CGCTAGACGCACCATCGG 60.655 66.667 0.00 0.00 39.08 4.18
339 340 2.279517 GCTAGACGCACCATCGGG 60.280 66.667 0.00 0.00 38.92 5.14
340 341 2.782222 GCTAGACGCACCATCGGGA 61.782 63.158 0.00 0.00 38.92 5.14
341 342 2.041976 CTAGACGCACCATCGGGAT 58.958 57.895 0.00 0.00 38.05 3.85
342 343 0.319040 CTAGACGCACCATCGGGATG 60.319 60.000 1.62 1.62 38.05 3.51
352 353 2.770164 CATCGGGATGGGGATAGAAC 57.230 55.000 0.62 0.00 35.24 3.01
353 354 1.066858 CATCGGGATGGGGATAGAACG 60.067 57.143 0.62 0.00 35.24 3.95
354 355 1.004918 CGGGATGGGGATAGAACGC 60.005 63.158 0.00 0.00 0.00 4.84
355 356 1.004918 GGGATGGGGATAGAACGCG 60.005 63.158 3.53 3.53 0.00 6.01
356 357 1.469335 GGGATGGGGATAGAACGCGA 61.469 60.000 15.93 0.00 0.00 5.87
357 358 0.038159 GGATGGGGATAGAACGCGAG 60.038 60.000 15.93 0.00 0.00 5.03
358 359 0.959553 GATGGGGATAGAACGCGAGA 59.040 55.000 15.93 0.00 0.00 4.04
359 360 0.962489 ATGGGGATAGAACGCGAGAG 59.038 55.000 15.93 0.00 0.00 3.20
360 361 0.106868 TGGGGATAGAACGCGAGAGA 60.107 55.000 15.93 0.00 0.00 3.10
361 362 0.311477 GGGGATAGAACGCGAGAGAC 59.689 60.000 15.93 0.00 0.00 3.36
362 363 1.022735 GGGATAGAACGCGAGAGACA 58.977 55.000 15.93 0.00 0.00 3.41
363 364 1.609555 GGGATAGAACGCGAGAGACAT 59.390 52.381 15.93 0.00 0.00 3.06
364 365 2.034812 GGGATAGAACGCGAGAGACATT 59.965 50.000 15.93 0.00 0.00 2.71
365 366 3.252701 GGGATAGAACGCGAGAGACATTA 59.747 47.826 15.93 0.00 0.00 1.90
366 367 4.082679 GGGATAGAACGCGAGAGACATTAT 60.083 45.833 15.93 0.00 0.00 1.28
367 368 5.462405 GGATAGAACGCGAGAGACATTATT 58.538 41.667 15.93 0.00 0.00 1.40
368 369 5.569823 GGATAGAACGCGAGAGACATTATTC 59.430 44.000 15.93 1.22 0.00 1.75
369 370 3.707793 AGAACGCGAGAGACATTATTCC 58.292 45.455 15.93 0.00 0.00 3.01
370 371 3.381908 AGAACGCGAGAGACATTATTCCT 59.618 43.478 15.93 0.00 0.00 3.36
371 372 4.579340 AGAACGCGAGAGACATTATTCCTA 59.421 41.667 15.93 0.00 0.00 2.94
372 373 4.226113 ACGCGAGAGACATTATTCCTAC 57.774 45.455 15.93 0.00 0.00 3.18
373 374 3.884091 ACGCGAGAGACATTATTCCTACT 59.116 43.478 15.93 0.00 0.00 2.57
374 375 4.222886 CGCGAGAGACATTATTCCTACTG 58.777 47.826 0.00 0.00 0.00 2.74
375 376 4.023963 CGCGAGAGACATTATTCCTACTGA 60.024 45.833 0.00 0.00 0.00 3.41
376 377 5.457140 GCGAGAGACATTATTCCTACTGAG 58.543 45.833 0.00 0.00 0.00 3.35
377 378 5.563867 GCGAGAGACATTATTCCTACTGAGG 60.564 48.000 0.00 0.00 45.35 3.86
378 379 5.048364 CGAGAGACATTATTCCTACTGAGGG 60.048 48.000 0.00 0.00 43.94 4.30
379 380 5.151454 AGAGACATTATTCCTACTGAGGGG 58.849 45.833 0.00 0.00 43.94 4.79
380 381 3.648545 AGACATTATTCCTACTGAGGGGC 59.351 47.826 0.00 0.00 43.94 5.80
381 382 3.391296 GACATTATTCCTACTGAGGGGCA 59.609 47.826 0.00 0.00 43.94 5.36
382 383 3.983410 ACATTATTCCTACTGAGGGGCAT 59.017 43.478 0.00 0.00 43.94 4.40
383 384 4.042187 ACATTATTCCTACTGAGGGGCATC 59.958 45.833 0.00 0.00 43.94 3.91
384 385 1.439543 ATTCCTACTGAGGGGCATCC 58.560 55.000 0.00 0.00 43.94 3.51
395 396 4.424711 GGCATCCCTTCCGCCACA 62.425 66.667 0.00 0.00 45.52 4.17
396 397 3.134127 GCATCCCTTCCGCCACAC 61.134 66.667 0.00 0.00 0.00 3.82
397 398 2.350895 CATCCCTTCCGCCACACA 59.649 61.111 0.00 0.00 0.00 3.72
398 399 1.746615 CATCCCTTCCGCCACACAG 60.747 63.158 0.00 0.00 0.00 3.66
399 400 3.628646 ATCCCTTCCGCCACACAGC 62.629 63.158 0.00 0.00 0.00 4.40
407 408 4.912395 GCCACACAGCCCCAACCA 62.912 66.667 0.00 0.00 0.00 3.67
408 409 2.118076 CCACACAGCCCCAACCAT 59.882 61.111 0.00 0.00 0.00 3.55
409 410 2.277591 CCACACAGCCCCAACCATG 61.278 63.158 0.00 0.00 0.00 3.66
410 411 1.228521 CACACAGCCCCAACCATGA 60.229 57.895 0.00 0.00 0.00 3.07
411 412 0.612732 CACACAGCCCCAACCATGAT 60.613 55.000 0.00 0.00 0.00 2.45
412 413 0.612732 ACACAGCCCCAACCATGATG 60.613 55.000 0.00 0.00 0.00 3.07
413 414 1.683365 ACAGCCCCAACCATGATGC 60.683 57.895 0.00 0.00 0.00 3.91
414 415 1.380785 CAGCCCCAACCATGATGCT 60.381 57.895 0.00 0.00 34.74 3.79
415 416 0.106569 CAGCCCCAACCATGATGCTA 60.107 55.000 0.00 0.00 33.62 3.49
416 417 0.630673 AGCCCCAACCATGATGCTAA 59.369 50.000 0.00 0.00 33.31 3.09
417 418 1.006998 AGCCCCAACCATGATGCTAAA 59.993 47.619 0.00 0.00 33.31 1.85
418 419 1.136891 GCCCCAACCATGATGCTAAAC 59.863 52.381 0.00 0.00 0.00 2.01
419 420 1.756538 CCCCAACCATGATGCTAAACC 59.243 52.381 0.00 0.00 0.00 3.27
420 421 2.624029 CCCCAACCATGATGCTAAACCT 60.624 50.000 0.00 0.00 0.00 3.50
421 422 3.372566 CCCCAACCATGATGCTAAACCTA 60.373 47.826 0.00 0.00 0.00 3.08
422 423 4.277476 CCCAACCATGATGCTAAACCTAA 58.723 43.478 0.00 0.00 0.00 2.69
423 424 4.097892 CCCAACCATGATGCTAAACCTAAC 59.902 45.833 0.00 0.00 0.00 2.34
424 425 4.704540 CCAACCATGATGCTAAACCTAACA 59.295 41.667 0.00 0.00 0.00 2.41
425 426 5.184864 CCAACCATGATGCTAAACCTAACAA 59.815 40.000 0.00 0.00 0.00 2.83
426 427 6.324819 CAACCATGATGCTAAACCTAACAAG 58.675 40.000 0.00 0.00 0.00 3.16
427 428 5.815581 ACCATGATGCTAAACCTAACAAGA 58.184 37.500 0.00 0.00 0.00 3.02
428 429 6.245408 ACCATGATGCTAAACCTAACAAGAA 58.755 36.000 0.00 0.00 0.00 2.52
429 430 6.151144 ACCATGATGCTAAACCTAACAAGAAC 59.849 38.462 0.00 0.00 0.00 3.01
430 431 5.856126 TGATGCTAAACCTAACAAGAACG 57.144 39.130 0.00 0.00 0.00 3.95
431 432 5.543714 TGATGCTAAACCTAACAAGAACGA 58.456 37.500 0.00 0.00 0.00 3.85
432 433 5.637810 TGATGCTAAACCTAACAAGAACGAG 59.362 40.000 0.00 0.00 0.00 4.18
433 434 5.204409 TGCTAAACCTAACAAGAACGAGA 57.796 39.130 0.00 0.00 0.00 4.04
434 435 5.603596 TGCTAAACCTAACAAGAACGAGAA 58.396 37.500 0.00 0.00 0.00 2.87
435 436 6.050432 TGCTAAACCTAACAAGAACGAGAAA 58.950 36.000 0.00 0.00 0.00 2.52
436 437 6.202188 TGCTAAACCTAACAAGAACGAGAAAG 59.798 38.462 0.00 0.00 0.00 2.62
437 438 6.347483 GCTAAACCTAACAAGAACGAGAAAGG 60.347 42.308 0.00 0.00 0.00 3.11
438 439 4.004196 ACCTAACAAGAACGAGAAAGGG 57.996 45.455 0.00 0.00 0.00 3.95
439 440 3.244457 ACCTAACAAGAACGAGAAAGGGG 60.244 47.826 0.00 0.00 0.00 4.79
440 441 3.244457 CCTAACAAGAACGAGAAAGGGGT 60.244 47.826 0.00 0.00 0.00 4.95
441 442 2.545537 ACAAGAACGAGAAAGGGGTC 57.454 50.000 0.00 0.00 0.00 4.46
442 443 1.071857 ACAAGAACGAGAAAGGGGTCC 59.928 52.381 0.00 0.00 0.00 4.46
443 444 0.691332 AAGAACGAGAAAGGGGTCCC 59.309 55.000 0.00 0.00 0.00 4.46
455 456 4.554036 GGTCCCTCCCATCAGCGC 62.554 72.222 0.00 0.00 0.00 5.92
456 457 4.899239 GTCCCTCCCATCAGCGCG 62.899 72.222 0.00 0.00 0.00 6.86
474 475 4.828296 GGGCCGAGGTCCTCCGTA 62.828 72.222 13.54 0.00 36.84 4.02
475 476 3.525545 GGCCGAGGTCCTCCGTAC 61.526 72.222 13.54 0.27 39.05 3.67
476 477 3.525545 GCCGAGGTCCTCCGTACC 61.526 72.222 13.54 0.00 39.05 3.34
482 483 1.486211 AGGTCCTCCGTACCTTCATG 58.514 55.000 0.00 0.00 45.26 3.07
483 484 0.464452 GGTCCTCCGTACCTTCATGG 59.536 60.000 0.00 0.00 42.93 3.66
484 485 0.179081 GTCCTCCGTACCTTCATGGC 60.179 60.000 0.00 0.00 40.22 4.40
485 486 1.146263 CCTCCGTACCTTCATGGCC 59.854 63.158 0.00 0.00 40.22 5.36
486 487 1.338136 CCTCCGTACCTTCATGGCCT 61.338 60.000 3.32 0.00 40.22 5.19
487 488 1.410004 CTCCGTACCTTCATGGCCTA 58.590 55.000 3.32 0.00 40.22 3.93
488 489 1.760613 CTCCGTACCTTCATGGCCTAA 59.239 52.381 3.32 0.00 40.22 2.69
489 490 2.169769 CTCCGTACCTTCATGGCCTAAA 59.830 50.000 3.32 0.00 40.22 1.85
490 491 2.169769 TCCGTACCTTCATGGCCTAAAG 59.830 50.000 3.32 4.80 40.22 1.85
491 492 2.561569 CGTACCTTCATGGCCTAAAGG 58.438 52.381 22.30 22.30 44.23 3.11
501 502 3.655358 CCTAAAGGCCATCGGGGA 58.345 61.111 5.01 0.00 40.01 4.81
502 503 2.155065 CCTAAAGGCCATCGGGGAT 58.845 57.895 5.01 0.00 40.01 3.85
503 504 0.250901 CCTAAAGGCCATCGGGGATG 60.251 60.000 5.01 0.00 40.01 3.51
510 511 2.772191 CATCGGGGATGGGGTGGA 60.772 66.667 0.00 0.00 36.51 4.02
511 512 2.772622 ATCGGGGATGGGGTGGAC 60.773 66.667 0.00 0.00 0.00 4.02
538 539 4.899239 CAGCGCCGATGGGAGGAC 62.899 72.222 2.29 0.00 33.07 3.85
548 549 3.274823 TGGGAGGACCAGGAAAACT 57.725 52.632 0.00 0.00 46.80 2.66
549 550 1.529744 TGGGAGGACCAGGAAAACTT 58.470 50.000 0.00 0.00 46.80 2.66
550 551 1.144913 TGGGAGGACCAGGAAAACTTG 59.855 52.381 0.00 0.00 46.80 3.16
551 552 1.423921 GGGAGGACCAGGAAAACTTGA 59.576 52.381 0.00 0.00 39.85 3.02
552 553 2.553247 GGGAGGACCAGGAAAACTTGAG 60.553 54.545 0.00 0.00 39.85 3.02
553 554 2.372172 GGAGGACCAGGAAAACTTGAGA 59.628 50.000 0.00 0.00 35.97 3.27
554 555 3.009584 GGAGGACCAGGAAAACTTGAGAT 59.990 47.826 0.00 0.00 35.97 2.75
555 556 4.257731 GAGGACCAGGAAAACTTGAGATC 58.742 47.826 0.00 0.00 0.00 2.75
556 557 3.913163 AGGACCAGGAAAACTTGAGATCT 59.087 43.478 0.00 0.00 0.00 2.75
557 558 4.352298 AGGACCAGGAAAACTTGAGATCTT 59.648 41.667 0.00 0.00 0.00 2.40
558 559 5.073428 GGACCAGGAAAACTTGAGATCTTT 58.927 41.667 0.00 0.00 0.00 2.52
559 560 5.536538 GGACCAGGAAAACTTGAGATCTTTT 59.463 40.000 0.00 0.00 0.00 2.27
560 561 6.294231 GGACCAGGAAAACTTGAGATCTTTTC 60.294 42.308 0.00 2.41 34.48 2.29
561 562 6.368805 ACCAGGAAAACTTGAGATCTTTTCT 58.631 36.000 13.76 0.00 35.25 2.52
562 563 6.836007 ACCAGGAAAACTTGAGATCTTTTCTT 59.164 34.615 13.76 6.31 35.25 2.52
563 564 7.144000 CCAGGAAAACTTGAGATCTTTTCTTG 58.856 38.462 16.36 16.36 39.17 3.02
564 565 7.201857 CCAGGAAAACTTGAGATCTTTTCTTGT 60.202 37.037 19.42 4.47 38.42 3.16
565 566 8.840321 CAGGAAAACTTGAGATCTTTTCTTGTA 58.160 33.333 15.59 0.00 36.75 2.41
566 567 9.408648 AGGAAAACTTGAGATCTTTTCTTGTAA 57.591 29.630 13.76 0.00 35.25 2.41
774 794 1.160137 ATGAGACCAAGCAACTTCGC 58.840 50.000 0.00 0.00 0.00 4.70
778 798 4.404654 CCAAGCAACTTCGCCCGC 62.405 66.667 0.00 0.00 0.00 6.13
811 831 5.046950 CACCTCCTTAACTTCTTACAGAGCT 60.047 44.000 0.00 0.00 0.00 4.09
818 838 0.818296 TTCTTACAGAGCTCTCGCCC 59.182 55.000 14.96 0.00 36.60 6.13
819 839 1.064946 CTTACAGAGCTCTCGCCCG 59.935 63.158 14.96 4.70 36.60 6.13
820 840 2.945398 CTTACAGAGCTCTCGCCCGC 62.945 65.000 14.96 0.00 36.60 6.13
826 846 4.537433 GCTCTCGCCCGCCTCATT 62.537 66.667 0.00 0.00 0.00 2.57
827 847 2.187946 CTCTCGCCCGCCTCATTT 59.812 61.111 0.00 0.00 0.00 2.32
828 848 1.441729 CTCTCGCCCGCCTCATTTA 59.558 57.895 0.00 0.00 0.00 1.40
838 858 6.879993 TCGCCCGCCTCATTTATAAATTATAA 59.120 34.615 8.01 1.58 0.00 0.98
858 878 1.971695 CCCCCAACGCTTTCACCTC 60.972 63.158 0.00 0.00 0.00 3.85
876 898 5.964477 TCACCTCCATCTACTTAACTCCAAT 59.036 40.000 0.00 0.00 0.00 3.16
879 901 7.070074 CACCTCCATCTACTTAACTCCAATACT 59.930 40.741 0.00 0.00 0.00 2.12
882 904 8.474710 TCCATCTACTTAACTCCAATACTACC 57.525 38.462 0.00 0.00 0.00 3.18
883 905 8.063153 TCCATCTACTTAACTCCAATACTACCA 58.937 37.037 0.00 0.00 0.00 3.25
884 906 8.701895 CCATCTACTTAACTCCAATACTACCAA 58.298 37.037 0.00 0.00 0.00 3.67
885 907 9.751542 CATCTACTTAACTCCAATACTACCAAG 57.248 37.037 0.00 0.00 0.00 3.61
886 908 9.710818 ATCTACTTAACTCCAATACTACCAAGA 57.289 33.333 0.00 0.00 0.00 3.02
887 909 9.186837 TCTACTTAACTCCAATACTACCAAGAG 57.813 37.037 0.00 0.00 0.00 2.85
888 910 7.184067 ACTTAACTCCAATACTACCAAGAGG 57.816 40.000 0.00 0.00 42.21 3.69
961 994 6.912951 TCCATACAAGTATAGAACTAGGCC 57.087 41.667 0.00 0.00 37.50 5.19
971 1007 0.808060 GAACTAGGCCGAGAAGCAGC 60.808 60.000 20.86 0.00 0.00 5.25
972 1008 1.544825 AACTAGGCCGAGAAGCAGCA 61.545 55.000 20.86 0.00 0.00 4.41
973 1009 1.219124 CTAGGCCGAGAAGCAGCAA 59.781 57.895 7.14 0.00 0.00 3.91
974 1010 1.079127 TAGGCCGAGAAGCAGCAAC 60.079 57.895 0.00 0.00 0.00 4.17
975 1011 1.826340 TAGGCCGAGAAGCAGCAACA 61.826 55.000 0.00 0.00 0.00 3.33
976 1012 2.260869 GGCCGAGAAGCAGCAACAA 61.261 57.895 0.00 0.00 0.00 2.83
977 1013 1.081840 GCCGAGAAGCAGCAACAAC 60.082 57.895 0.00 0.00 0.00 3.32
1018 1115 3.210012 ATGGTGGCCAAGGCGAAGT 62.210 57.895 7.24 0.00 43.06 3.01
1097 1203 2.278857 CGCCGAAGACGATGAGGG 60.279 66.667 0.00 0.00 42.66 4.30
1368 1633 3.342377 TCATCCACCTGCAAATTACGA 57.658 42.857 0.00 0.00 0.00 3.43
1453 1721 1.754234 GAACAGCATCCGGCCCAAT 60.754 57.895 0.00 0.00 46.50 3.16
1583 1869 2.752640 TCTACTACCGCGGCAGCA 60.753 61.111 28.58 12.44 45.49 4.41
1631 1917 2.564553 GATGCACGAGTTCCGCCTCT 62.565 60.000 0.00 0.00 43.32 3.69
1994 2365 2.441532 CTTGCATCCCCCAGCAGG 60.442 66.667 0.00 0.00 42.39 4.85
2019 2399 2.092323 CCAGTACGTCAGTCAGATGGA 58.908 52.381 0.00 0.00 37.58 3.41
2070 2450 0.740737 GATACCATGCACAACCAGCC 59.259 55.000 0.00 0.00 0.00 4.85
2129 2518 2.581354 CGGAGGAGAAGCCACAGG 59.419 66.667 0.00 0.00 40.02 4.00
2132 2521 1.794714 GGAGGAGAAGCCACAGGATA 58.205 55.000 0.00 0.00 40.02 2.59
2135 2524 1.834263 AGGAGAAGCCACAGGATACAC 59.166 52.381 0.00 0.00 40.02 2.90
2150 2539 1.175654 TACACTATCAACGGCCGTCA 58.824 50.000 34.29 22.13 0.00 4.35
2237 2635 1.080839 GAGGAGATCGCGAGGATGC 60.081 63.158 16.66 8.21 34.82 3.91
2297 2701 4.135747 TCATACGGTTGATCAGCATTCA 57.864 40.909 11.93 0.00 0.00 2.57
2298 2702 4.122046 TCATACGGTTGATCAGCATTCAG 58.878 43.478 11.93 0.00 0.00 3.02
2299 2703 1.089920 ACGGTTGATCAGCATTCAGC 58.910 50.000 11.93 0.00 46.19 4.26
2423 2924 1.873591 GCTGCTTCGGAAACTGAAAGA 59.126 47.619 2.68 0.00 37.43 2.52
2431 2932 1.332686 GGAAACTGAAAGAAACGGCGT 59.667 47.619 6.77 6.77 37.43 5.68
2542 3054 1.267121 TCTACCTTCTGTGGTGCCTC 58.733 55.000 0.00 0.00 41.05 4.70
2604 3116 4.320456 CTGGCGGCTGAGTGTGGT 62.320 66.667 11.43 0.00 0.00 4.16
2632 3144 3.706373 GTCCGGGGAAGCAGCAGA 61.706 66.667 0.00 0.00 0.00 4.26
2798 3417 8.462016 CCTTGAAAACCTATATTTGAGGAACAG 58.538 37.037 0.00 0.00 37.53 3.16
2922 3541 7.450074 TGATTATATTCGGTCCAACTAGCAAT 58.550 34.615 0.00 0.00 0.00 3.56
2934 3553 2.716217 ACTAGCAATCCTGGAGCAAAC 58.284 47.619 10.18 0.00 0.00 2.93
2940 3559 1.568504 ATCCTGGAGCAAACGTAGGA 58.431 50.000 1.52 3.56 41.41 2.94
2954 5018 2.938086 TAGGAAGACAGCCGCGCAA 61.938 57.895 8.75 0.00 0.00 4.85
2955 5019 2.443260 TAGGAAGACAGCCGCGCAAA 62.443 55.000 8.75 0.00 0.00 3.68
2993 5057 4.814294 ATCGGAACTCGTGCCGCC 62.814 66.667 11.64 0.00 46.79 6.13
3042 5106 7.325821 TGAAAAACCGAAGAATTTCATGATTCG 59.674 33.333 17.44 17.44 40.22 3.34
3066 5130 2.268920 GAGCCATGGTCGGAAGCA 59.731 61.111 14.67 0.00 37.29 3.91
3109 5173 0.955428 GCATGTTCTGCCTCGTCCAA 60.955 55.000 0.00 0.00 45.66 3.53
3113 5177 0.249911 GTTCTGCCTCGTCCAAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
3114 5178 0.249868 TTCTGCCTCGTCCAAGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
3115 5179 2.280797 TGCCTCGTCCAAGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
3116 5180 3.414700 GCCTCGTCCAAGTGTGCG 61.415 66.667 0.00 0.00 0.00 5.34
3117 5181 2.029073 CCTCGTCCAAGTGTGCGT 59.971 61.111 0.00 0.00 0.00 5.24
3118 5182 2.310233 CCTCGTCCAAGTGTGCGTG 61.310 63.158 0.00 0.00 0.00 5.34
3119 5183 2.943345 CTCGTCCAAGTGTGCGTGC 61.943 63.158 0.00 0.00 0.00 5.34
3120 5184 4.354212 CGTCCAAGTGTGCGTGCG 62.354 66.667 0.00 0.00 0.00 5.34
3121 5185 3.269347 GTCCAAGTGTGCGTGCGT 61.269 61.111 0.00 0.00 0.00 5.24
3122 5186 2.964925 TCCAAGTGTGCGTGCGTC 60.965 61.111 0.00 0.00 0.00 5.19
3170 5234 1.534476 TACGGGTGCCCTTCTGTCA 60.534 57.895 5.64 0.00 0.00 3.58
3191 5255 1.132365 AGAGTCCCTTCTTCCCCTTGT 60.132 52.381 0.00 0.00 0.00 3.16
3192 5256 1.003696 GAGTCCCTTCTTCCCCTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
3241 5305 2.677228 CCCAAGGGTGGCACTAGG 59.323 66.667 18.45 13.37 44.46 3.02
3242 5306 2.044946 CCAAGGGTGGCACTAGGC 60.045 66.667 18.45 0.00 38.35 3.93
3252 5316 3.411517 CACTAGGCCCCTGGGGTG 61.412 72.222 31.95 18.46 46.51 4.61
3272 5336 4.436998 CCAGGACGGCCGTCTCAC 62.437 72.222 46.25 33.92 44.04 3.51
3273 5337 4.778415 CAGGACGGCCGTCTCACG 62.778 72.222 46.25 31.25 44.04 4.35
3283 5347 3.173240 GTCTCACGCGGACGAAGC 61.173 66.667 12.47 0.00 43.93 3.86
3284 5348 3.362797 TCTCACGCGGACGAAGCT 61.363 61.111 12.47 0.00 43.93 3.74
3285 5349 2.036571 TCTCACGCGGACGAAGCTA 61.037 57.895 12.47 0.00 43.93 3.32
3286 5350 1.868251 CTCACGCGGACGAAGCTAC 60.868 63.158 12.47 0.00 43.93 3.58
3287 5351 2.126618 CACGCGGACGAAGCTACA 60.127 61.111 12.47 0.00 43.93 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.578020 TTATTTCTGGCGTTCGTTATACTG 57.422 37.500 0.00 0.00 0.00 2.74
2 3 9.919348 TTTTATTATTTCTGGCGTTCGTTATAC 57.081 29.630 0.00 0.00 0.00 1.47
6 7 9.843334 TTATTTTTATTATTTCTGGCGTTCGTT 57.157 25.926 0.00 0.00 0.00 3.85
7 8 9.281075 GTTATTTTTATTATTTCTGGCGTTCGT 57.719 29.630 0.00 0.00 0.00 3.85
8 9 9.279904 TGTTATTTTTATTATTTCTGGCGTTCG 57.720 29.630 0.00 0.00 0.00 3.95
21 22 8.679100 CCACGGACCTGAATGTTATTTTTATTA 58.321 33.333 0.00 0.00 0.00 0.98
22 23 7.394923 TCCACGGACCTGAATGTTATTTTTATT 59.605 33.333 0.00 0.00 0.00 1.40
23 24 6.887545 TCCACGGACCTGAATGTTATTTTTAT 59.112 34.615 0.00 0.00 0.00 1.40
24 25 6.149807 GTCCACGGACCTGAATGTTATTTTTA 59.850 38.462 4.78 0.00 39.08 1.52
25 26 5.048294 GTCCACGGACCTGAATGTTATTTTT 60.048 40.000 4.78 0.00 39.08 1.94
26 27 4.457949 GTCCACGGACCTGAATGTTATTTT 59.542 41.667 4.78 0.00 39.08 1.82
27 28 4.007659 GTCCACGGACCTGAATGTTATTT 58.992 43.478 4.78 0.00 39.08 1.40
28 29 3.606687 GTCCACGGACCTGAATGTTATT 58.393 45.455 4.78 0.00 39.08 1.40
29 30 3.261981 GTCCACGGACCTGAATGTTAT 57.738 47.619 4.78 0.00 39.08 1.89
30 31 2.754946 GTCCACGGACCTGAATGTTA 57.245 50.000 4.78 0.00 39.08 2.41
31 32 3.625745 GTCCACGGACCTGAATGTT 57.374 52.632 4.78 0.00 39.08 2.71
40 41 2.976356 GGTAGGTGGTCCACGGAC 59.024 66.667 15.93 14.79 43.87 4.79
41 42 2.677524 CGGTAGGTGGTCCACGGA 60.678 66.667 15.93 3.12 34.83 4.69
42 43 2.677524 TCGGTAGGTGGTCCACGG 60.678 66.667 15.93 3.03 34.83 4.94
43 44 2.570181 GTCGGTAGGTGGTCCACG 59.430 66.667 15.93 4.19 34.83 4.94
44 45 1.318158 ATCGTCGGTAGGTGGTCCAC 61.318 60.000 14.13 14.13 35.89 4.02
45 46 0.612732 AATCGTCGGTAGGTGGTCCA 60.613 55.000 0.00 0.00 35.89 4.02
46 47 1.066152 GTAATCGTCGGTAGGTGGTCC 59.934 57.143 0.00 0.00 0.00 4.46
47 48 1.745087 TGTAATCGTCGGTAGGTGGTC 59.255 52.381 0.00 0.00 0.00 4.02
48 49 1.838112 TGTAATCGTCGGTAGGTGGT 58.162 50.000 0.00 0.00 0.00 4.16
49 50 2.805845 CTTGTAATCGTCGGTAGGTGG 58.194 52.381 0.00 0.00 0.00 4.61
50 51 2.190981 GCTTGTAATCGTCGGTAGGTG 58.809 52.381 0.00 0.00 0.00 4.00
51 52 1.820519 TGCTTGTAATCGTCGGTAGGT 59.179 47.619 0.00 0.00 0.00 3.08
52 53 2.159282 AGTGCTTGTAATCGTCGGTAGG 60.159 50.000 0.00 0.00 0.00 3.18
53 54 2.852413 CAGTGCTTGTAATCGTCGGTAG 59.148 50.000 0.00 0.00 0.00 3.18
54 55 2.416296 CCAGTGCTTGTAATCGTCGGTA 60.416 50.000 0.00 0.00 0.00 4.02
55 56 1.671850 CCAGTGCTTGTAATCGTCGGT 60.672 52.381 0.00 0.00 0.00 4.69
56 57 0.999406 CCAGTGCTTGTAATCGTCGG 59.001 55.000 0.00 0.00 0.00 4.79
57 58 0.999406 CCCAGTGCTTGTAATCGTCG 59.001 55.000 0.00 0.00 0.00 5.12
58 59 1.369625 CCCCAGTGCTTGTAATCGTC 58.630 55.000 0.00 0.00 0.00 4.20
59 60 0.676782 GCCCCAGTGCTTGTAATCGT 60.677 55.000 0.00 0.00 0.00 3.73
60 61 1.705337 CGCCCCAGTGCTTGTAATCG 61.705 60.000 0.00 0.00 0.00 3.34
61 62 0.392461 TCGCCCCAGTGCTTGTAATC 60.392 55.000 0.00 0.00 0.00 1.75
62 63 0.392998 CTCGCCCCAGTGCTTGTAAT 60.393 55.000 0.00 0.00 0.00 1.89
63 64 1.003839 CTCGCCCCAGTGCTTGTAA 60.004 57.895 0.00 0.00 0.00 2.41
64 65 1.911269 TCTCGCCCCAGTGCTTGTA 60.911 57.895 0.00 0.00 0.00 2.41
65 66 3.241530 TCTCGCCCCAGTGCTTGT 61.242 61.111 0.00 0.00 0.00 3.16
66 67 2.743928 GTCTCGCCCCAGTGCTTG 60.744 66.667 0.00 0.00 0.00 4.01
67 68 4.379243 CGTCTCGCCCCAGTGCTT 62.379 66.667 0.00 0.00 0.00 3.91
85 86 2.280389 ATGATGGTAGCGCGCCAG 60.280 61.111 30.33 0.00 39.65 4.85
86 87 2.280119 GATGATGGTAGCGCGCCA 60.280 61.111 30.33 24.61 40.68 5.69
87 88 2.280119 TGATGATGGTAGCGCGCC 60.280 61.111 30.33 13.91 0.00 6.53
88 89 2.598632 GGTGATGATGGTAGCGCGC 61.599 63.158 26.66 26.66 0.00 6.86
89 90 0.809636 TTGGTGATGATGGTAGCGCG 60.810 55.000 0.00 0.00 0.00 6.86
90 91 0.657840 GTTGGTGATGATGGTAGCGC 59.342 55.000 0.00 0.00 0.00 5.92
91 92 2.022764 TGTTGGTGATGATGGTAGCG 57.977 50.000 0.00 0.00 0.00 4.26
92 93 2.545526 CGATGTTGGTGATGATGGTAGC 59.454 50.000 0.00 0.00 0.00 3.58
93 94 4.053983 CTCGATGTTGGTGATGATGGTAG 58.946 47.826 0.00 0.00 0.00 3.18
94 95 3.704061 TCTCGATGTTGGTGATGATGGTA 59.296 43.478 0.00 0.00 0.00 3.25
95 96 2.501316 TCTCGATGTTGGTGATGATGGT 59.499 45.455 0.00 0.00 0.00 3.55
96 97 3.183793 TCTCGATGTTGGTGATGATGG 57.816 47.619 0.00 0.00 0.00 3.51
97 98 4.186926 ACTTCTCGATGTTGGTGATGATG 58.813 43.478 0.00 0.00 0.00 3.07
98 99 4.478206 ACTTCTCGATGTTGGTGATGAT 57.522 40.909 0.00 0.00 0.00 2.45
99 100 3.961480 ACTTCTCGATGTTGGTGATGA 57.039 42.857 0.00 0.00 0.00 2.92
100 101 4.332186 CAACTTCTCGATGTTGGTGATG 57.668 45.455 14.45 0.79 40.59 3.07
106 107 1.136252 CACGCCAACTTCTCGATGTTG 60.136 52.381 15.02 15.02 42.58 3.33
107 108 1.148310 CACGCCAACTTCTCGATGTT 58.852 50.000 0.00 0.00 0.00 2.71
108 109 1.291877 GCACGCCAACTTCTCGATGT 61.292 55.000 0.00 0.00 0.00 3.06
109 110 1.016130 AGCACGCCAACTTCTCGATG 61.016 55.000 0.00 0.00 0.00 3.84
110 111 0.530744 TAGCACGCCAACTTCTCGAT 59.469 50.000 0.00 0.00 0.00 3.59
111 112 0.315886 TTAGCACGCCAACTTCTCGA 59.684 50.000 0.00 0.00 0.00 4.04
112 113 0.716108 CTTAGCACGCCAACTTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
113 114 1.727335 GTCTTAGCACGCCAACTTCTC 59.273 52.381 0.00 0.00 0.00 2.87
114 115 1.608283 GGTCTTAGCACGCCAACTTCT 60.608 52.381 0.00 0.00 0.00 2.85
115 116 0.796927 GGTCTTAGCACGCCAACTTC 59.203 55.000 0.00 0.00 0.00 3.01
116 117 0.605589 GGGTCTTAGCACGCCAACTT 60.606 55.000 0.00 0.00 0.00 2.66
117 118 1.003718 GGGTCTTAGCACGCCAACT 60.004 57.895 0.00 0.00 0.00 3.16
118 119 0.248289 TAGGGTCTTAGCACGCCAAC 59.752 55.000 0.00 0.00 0.00 3.77
119 120 1.200519 ATAGGGTCTTAGCACGCCAA 58.799 50.000 0.00 0.00 0.00 4.52
120 121 1.961394 CTATAGGGTCTTAGCACGCCA 59.039 52.381 0.00 0.00 0.00 5.69
121 122 1.272769 CCTATAGGGTCTTAGCACGCC 59.727 57.143 11.33 0.00 0.00 5.68
122 123 2.030096 GTCCTATAGGGTCTTAGCACGC 60.030 54.545 18.97 0.00 36.25 5.34
123 124 2.557490 GGTCCTATAGGGTCTTAGCACG 59.443 54.545 18.97 0.00 36.25 5.34
124 125 3.573695 TGGTCCTATAGGGTCTTAGCAC 58.426 50.000 18.97 6.68 36.25 4.40
125 126 3.845860 CTGGTCCTATAGGGTCTTAGCA 58.154 50.000 18.97 13.03 36.25 3.49
126 127 2.563620 GCTGGTCCTATAGGGTCTTAGC 59.436 54.545 18.97 18.28 36.25 3.09
127 128 2.820787 CGCTGGTCCTATAGGGTCTTAG 59.179 54.545 18.97 13.93 36.25 2.18
128 129 2.872732 CGCTGGTCCTATAGGGTCTTA 58.127 52.381 18.97 0.00 36.25 2.10
129 130 1.705873 CGCTGGTCCTATAGGGTCTT 58.294 55.000 18.97 0.00 36.25 3.01
130 131 0.828343 GCGCTGGTCCTATAGGGTCT 60.828 60.000 18.97 0.00 36.25 3.85
131 132 1.113517 TGCGCTGGTCCTATAGGGTC 61.114 60.000 18.97 11.82 36.25 4.46
132 133 1.075525 TGCGCTGGTCCTATAGGGT 60.076 57.895 18.97 0.00 36.25 4.34
133 134 1.367840 GTGCGCTGGTCCTATAGGG 59.632 63.158 18.97 3.70 35.41 3.53
134 135 0.032678 CTGTGCGCTGGTCCTATAGG 59.967 60.000 13.07 13.07 0.00 2.57
135 136 1.000827 CTCTGTGCGCTGGTCCTATAG 60.001 57.143 9.73 0.00 0.00 1.31
136 137 1.032794 CTCTGTGCGCTGGTCCTATA 58.967 55.000 9.73 0.00 0.00 1.31
137 138 1.819229 CTCTGTGCGCTGGTCCTAT 59.181 57.895 9.73 0.00 0.00 2.57
138 139 3.006756 GCTCTGTGCGCTGGTCCTA 62.007 63.158 9.73 0.00 0.00 2.94
139 140 4.385405 GCTCTGTGCGCTGGTCCT 62.385 66.667 9.73 0.00 0.00 3.85
140 141 3.965539 ATGCTCTGTGCGCTGGTCC 62.966 63.158 9.73 0.00 46.63 4.46
141 142 0.740868 TAATGCTCTGTGCGCTGGTC 60.741 55.000 9.73 0.00 46.63 4.02
142 143 0.321564 TTAATGCTCTGTGCGCTGGT 60.322 50.000 9.73 0.00 46.63 4.00
143 144 0.097674 GTTAATGCTCTGTGCGCTGG 59.902 55.000 9.73 0.00 46.63 4.85
144 145 0.097674 GGTTAATGCTCTGTGCGCTG 59.902 55.000 9.73 0.00 46.63 5.18
145 146 0.036010 AGGTTAATGCTCTGTGCGCT 60.036 50.000 9.73 0.00 46.63 5.92
146 147 0.804989 AAGGTTAATGCTCTGTGCGC 59.195 50.000 0.00 0.00 46.63 6.09
147 148 4.332543 TGATAAAGGTTAATGCTCTGTGCG 59.667 41.667 0.00 0.00 46.63 5.34
148 149 5.818136 TGATAAAGGTTAATGCTCTGTGC 57.182 39.130 0.00 0.00 43.25 4.57
149 150 7.988737 TCAATGATAAAGGTTAATGCTCTGTG 58.011 34.615 0.00 0.00 0.00 3.66
150 151 8.579850 TTCAATGATAAAGGTTAATGCTCTGT 57.420 30.769 0.00 0.00 0.00 3.41
151 152 8.896744 TCTTCAATGATAAAGGTTAATGCTCTG 58.103 33.333 0.00 0.00 0.00 3.35
152 153 9.466497 TTCTTCAATGATAAAGGTTAATGCTCT 57.534 29.630 0.00 0.00 0.00 4.09
155 156 9.860898 ACTTTCTTCAATGATAAAGGTTAATGC 57.139 29.630 17.34 0.00 34.07 3.56
158 159 9.280174 ACGACTTTCTTCAATGATAAAGGTTAA 57.720 29.630 17.34 0.00 34.07 2.01
159 160 8.842358 ACGACTTTCTTCAATGATAAAGGTTA 57.158 30.769 17.34 0.00 34.07 2.85
160 161 7.745620 ACGACTTTCTTCAATGATAAAGGTT 57.254 32.000 17.34 3.76 34.07 3.50
161 162 8.311836 TCTACGACTTTCTTCAATGATAAAGGT 58.688 33.333 17.34 11.47 34.07 3.50
162 163 8.703604 TCTACGACTTTCTTCAATGATAAAGG 57.296 34.615 17.34 5.17 34.07 3.11
164 165 9.020813 CGATCTACGACTTTCTTCAATGATAAA 57.979 33.333 0.00 0.00 45.77 1.40
165 166 7.648112 CCGATCTACGACTTTCTTCAATGATAA 59.352 37.037 0.00 0.00 45.77 1.75
166 167 7.012989 TCCGATCTACGACTTTCTTCAATGATA 59.987 37.037 0.00 0.00 45.77 2.15
167 168 5.980116 CCGATCTACGACTTTCTTCAATGAT 59.020 40.000 0.00 0.00 45.77 2.45
168 169 5.124936 TCCGATCTACGACTTTCTTCAATGA 59.875 40.000 0.00 0.00 45.77 2.57
169 170 5.340803 TCCGATCTACGACTTTCTTCAATG 58.659 41.667 0.00 0.00 45.77 2.82
170 171 5.578005 TCCGATCTACGACTTTCTTCAAT 57.422 39.130 0.00 0.00 45.77 2.57
171 172 5.381174 TTCCGATCTACGACTTTCTTCAA 57.619 39.130 0.00 0.00 45.77 2.69
172 173 4.142447 CCTTCCGATCTACGACTTTCTTCA 60.142 45.833 0.00 0.00 45.77 3.02
173 174 4.096081 TCCTTCCGATCTACGACTTTCTTC 59.904 45.833 0.00 0.00 45.77 2.87
174 175 4.015084 TCCTTCCGATCTACGACTTTCTT 58.985 43.478 0.00 0.00 45.77 2.52
175 176 3.618351 TCCTTCCGATCTACGACTTTCT 58.382 45.455 0.00 0.00 45.77 2.52
176 177 4.538917 GATCCTTCCGATCTACGACTTTC 58.461 47.826 0.00 0.00 43.65 2.62
177 178 3.003482 CGATCCTTCCGATCTACGACTTT 59.997 47.826 0.00 0.00 44.66 2.66
178 179 2.548904 CGATCCTTCCGATCTACGACTT 59.451 50.000 0.00 0.00 44.66 3.01
179 180 2.144730 CGATCCTTCCGATCTACGACT 58.855 52.381 0.00 0.00 44.66 4.18
180 181 2.141517 TCGATCCTTCCGATCTACGAC 58.858 52.381 0.00 0.00 44.66 4.34
181 182 2.538512 TCGATCCTTCCGATCTACGA 57.461 50.000 0.00 0.00 44.66 3.43
182 183 2.350580 GGTTCGATCCTTCCGATCTACG 60.351 54.545 5.21 0.00 44.66 3.51
183 184 2.885894 AGGTTCGATCCTTCCGATCTAC 59.114 50.000 9.33 0.00 44.66 2.59
184 185 3.225177 AGGTTCGATCCTTCCGATCTA 57.775 47.619 9.33 0.00 44.66 1.98
185 186 2.074729 AGGTTCGATCCTTCCGATCT 57.925 50.000 9.33 0.00 44.66 2.75
186 187 5.640189 TTATAGGTTCGATCCTTCCGATC 57.360 43.478 19.85 0.00 43.58 3.69
187 188 5.303589 TGTTTATAGGTTCGATCCTTCCGAT 59.696 40.000 19.85 10.01 38.86 4.18
188 189 4.646040 TGTTTATAGGTTCGATCCTTCCGA 59.354 41.667 19.85 2.84 38.86 4.55
189 190 4.743644 GTGTTTATAGGTTCGATCCTTCCG 59.256 45.833 19.85 0.00 38.86 4.30
190 191 5.055144 GGTGTTTATAGGTTCGATCCTTCC 58.945 45.833 19.85 8.16 38.86 3.46
191 192 5.055144 GGGTGTTTATAGGTTCGATCCTTC 58.945 45.833 19.85 7.21 38.86 3.46
192 193 4.472108 TGGGTGTTTATAGGTTCGATCCTT 59.528 41.667 19.85 10.50 38.86 3.36
193 194 4.035112 TGGGTGTTTATAGGTTCGATCCT 58.965 43.478 18.74 18.74 41.20 3.24
194 195 4.411256 TGGGTGTTTATAGGTTCGATCC 57.589 45.455 4.21 4.21 0.00 3.36
195 196 5.220529 CGTTTGGGTGTTTATAGGTTCGATC 60.221 44.000 0.00 0.00 0.00 3.69
196 197 4.632688 CGTTTGGGTGTTTATAGGTTCGAT 59.367 41.667 0.00 0.00 0.00 3.59
197 198 3.995705 CGTTTGGGTGTTTATAGGTTCGA 59.004 43.478 0.00 0.00 0.00 3.71
198 199 3.995705 TCGTTTGGGTGTTTATAGGTTCG 59.004 43.478 0.00 0.00 0.00 3.95
199 200 5.702209 TCTTCGTTTGGGTGTTTATAGGTTC 59.298 40.000 0.00 0.00 0.00 3.62
200 201 5.471116 GTCTTCGTTTGGGTGTTTATAGGTT 59.529 40.000 0.00 0.00 0.00 3.50
201 202 4.999311 GTCTTCGTTTGGGTGTTTATAGGT 59.001 41.667 0.00 0.00 0.00 3.08
202 203 4.998672 TGTCTTCGTTTGGGTGTTTATAGG 59.001 41.667 0.00 0.00 0.00 2.57
203 204 6.548441 TTGTCTTCGTTTGGGTGTTTATAG 57.452 37.500 0.00 0.00 0.00 1.31
204 205 7.228906 TCAATTGTCTTCGTTTGGGTGTTTATA 59.771 33.333 5.13 0.00 0.00 0.98
205 206 6.039941 TCAATTGTCTTCGTTTGGGTGTTTAT 59.960 34.615 5.13 0.00 0.00 1.40
206 207 5.357314 TCAATTGTCTTCGTTTGGGTGTTTA 59.643 36.000 5.13 0.00 0.00 2.01
207 208 4.158764 TCAATTGTCTTCGTTTGGGTGTTT 59.841 37.500 5.13 0.00 0.00 2.83
208 209 3.697045 TCAATTGTCTTCGTTTGGGTGTT 59.303 39.130 5.13 0.00 0.00 3.32
209 210 3.283751 TCAATTGTCTTCGTTTGGGTGT 58.716 40.909 5.13 0.00 0.00 4.16
210 211 3.980646 TCAATTGTCTTCGTTTGGGTG 57.019 42.857 5.13 0.00 0.00 4.61
211 212 4.204012 TCTTCAATTGTCTTCGTTTGGGT 58.796 39.130 5.13 0.00 0.00 4.51
212 213 4.829064 TCTTCAATTGTCTTCGTTTGGG 57.171 40.909 5.13 0.00 0.00 4.12
213 214 5.577835 TGTTCTTCAATTGTCTTCGTTTGG 58.422 37.500 5.13 0.00 0.00 3.28
214 215 6.486248 TCTGTTCTTCAATTGTCTTCGTTTG 58.514 36.000 5.13 0.00 0.00 2.93
215 216 6.677781 TCTGTTCTTCAATTGTCTTCGTTT 57.322 33.333 5.13 0.00 0.00 3.60
216 217 6.867662 ATCTGTTCTTCAATTGTCTTCGTT 57.132 33.333 5.13 0.00 0.00 3.85
217 218 6.483307 TGAATCTGTTCTTCAATTGTCTTCGT 59.517 34.615 5.13 0.00 35.33 3.85
218 219 6.891624 TGAATCTGTTCTTCAATTGTCTTCG 58.108 36.000 5.13 0.00 35.33 3.79
219 220 9.688592 ATTTGAATCTGTTCTTCAATTGTCTTC 57.311 29.630 5.13 0.00 41.03 2.87
226 227 9.690913 TGGATCTATTTGAATCTGTTCTTCAAT 57.309 29.630 0.00 0.00 41.03 2.57
227 228 8.950210 GTGGATCTATTTGAATCTGTTCTTCAA 58.050 33.333 0.00 0.00 40.02 2.69
228 229 7.554118 GGTGGATCTATTTGAATCTGTTCTTCA 59.446 37.037 0.00 0.00 35.33 3.02
229 230 7.254590 CGGTGGATCTATTTGAATCTGTTCTTC 60.255 40.741 0.00 0.00 35.33 2.87
230 231 6.540189 CGGTGGATCTATTTGAATCTGTTCTT 59.460 38.462 0.00 0.00 35.33 2.52
231 232 6.051717 CGGTGGATCTATTTGAATCTGTTCT 58.948 40.000 0.00 0.00 35.33 3.01
232 233 6.049149 TCGGTGGATCTATTTGAATCTGTTC 58.951 40.000 0.00 0.00 34.85 3.18
233 234 5.989477 TCGGTGGATCTATTTGAATCTGTT 58.011 37.500 0.00 0.00 0.00 3.16
234 235 5.614324 TCGGTGGATCTATTTGAATCTGT 57.386 39.130 0.00 0.00 0.00 3.41
235 236 6.925610 TTTCGGTGGATCTATTTGAATCTG 57.074 37.500 0.00 0.00 0.00 2.90
236 237 6.318900 GGTTTTCGGTGGATCTATTTGAATCT 59.681 38.462 0.00 0.00 0.00 2.40
237 238 6.094881 TGGTTTTCGGTGGATCTATTTGAATC 59.905 38.462 0.00 0.00 0.00 2.52
238 239 5.949354 TGGTTTTCGGTGGATCTATTTGAAT 59.051 36.000 0.00 0.00 0.00 2.57
239 240 5.317808 TGGTTTTCGGTGGATCTATTTGAA 58.682 37.500 0.00 0.00 0.00 2.69
240 241 4.912586 TGGTTTTCGGTGGATCTATTTGA 58.087 39.130 0.00 0.00 0.00 2.69
241 242 4.438744 GCTGGTTTTCGGTGGATCTATTTG 60.439 45.833 0.00 0.00 0.00 2.32
242 243 3.694566 GCTGGTTTTCGGTGGATCTATTT 59.305 43.478 0.00 0.00 0.00 1.40
243 244 3.279434 GCTGGTTTTCGGTGGATCTATT 58.721 45.455 0.00 0.00 0.00 1.73
244 245 2.238646 TGCTGGTTTTCGGTGGATCTAT 59.761 45.455 0.00 0.00 0.00 1.98
245 246 1.626321 TGCTGGTTTTCGGTGGATCTA 59.374 47.619 0.00 0.00 0.00 1.98
246 247 0.400213 TGCTGGTTTTCGGTGGATCT 59.600 50.000 0.00 0.00 0.00 2.75
247 248 0.521735 GTGCTGGTTTTCGGTGGATC 59.478 55.000 0.00 0.00 0.00 3.36
248 249 0.893727 GGTGCTGGTTTTCGGTGGAT 60.894 55.000 0.00 0.00 0.00 3.41
249 250 1.527380 GGTGCTGGTTTTCGGTGGA 60.527 57.895 0.00 0.00 0.00 4.02
250 251 2.903547 CGGTGCTGGTTTTCGGTGG 61.904 63.158 0.00 0.00 0.00 4.61
251 252 1.890041 TCGGTGCTGGTTTTCGGTG 60.890 57.895 0.00 0.00 0.00 4.94
252 253 1.890510 GTCGGTGCTGGTTTTCGGT 60.891 57.895 0.00 0.00 0.00 4.69
253 254 2.613506 GGTCGGTGCTGGTTTTCGG 61.614 63.158 0.00 0.00 0.00 4.30
254 255 2.943653 GGTCGGTGCTGGTTTTCG 59.056 61.111 0.00 0.00 0.00 3.46
255 256 1.161563 TTCGGTCGGTGCTGGTTTTC 61.162 55.000 0.00 0.00 0.00 2.29
256 257 0.536460 ATTCGGTCGGTGCTGGTTTT 60.536 50.000 0.00 0.00 0.00 2.43
257 258 0.953960 GATTCGGTCGGTGCTGGTTT 60.954 55.000 0.00 0.00 0.00 3.27
258 259 1.375523 GATTCGGTCGGTGCTGGTT 60.376 57.895 0.00 0.00 0.00 3.67
259 260 2.264794 GATTCGGTCGGTGCTGGT 59.735 61.111 0.00 0.00 0.00 4.00
260 261 2.511600 GGATTCGGTCGGTGCTGG 60.512 66.667 0.00 0.00 0.00 4.85
261 262 1.811266 CAGGATTCGGTCGGTGCTG 60.811 63.158 4.61 4.61 0.00 4.41
262 263 2.579201 CAGGATTCGGTCGGTGCT 59.421 61.111 0.00 0.00 0.00 4.40
263 264 3.195698 GCAGGATTCGGTCGGTGC 61.196 66.667 0.00 0.00 32.42 5.01
264 265 2.885644 CGCAGGATTCGGTCGGTG 60.886 66.667 0.00 0.00 0.00 4.94
265 266 3.064987 CTCGCAGGATTCGGTCGGT 62.065 63.158 0.00 0.00 0.00 4.69
266 267 2.076622 ATCTCGCAGGATTCGGTCGG 62.077 60.000 0.00 0.00 0.00 4.79
267 268 0.661780 GATCTCGCAGGATTCGGTCG 60.662 60.000 0.00 0.00 0.00 4.79
268 269 0.319125 GGATCTCGCAGGATTCGGTC 60.319 60.000 0.00 0.00 0.00 4.79
269 270 1.742768 GGATCTCGCAGGATTCGGT 59.257 57.895 0.00 0.00 0.00 4.69
270 271 1.372251 CGGATCTCGCAGGATTCGG 60.372 63.158 8.26 0.00 40.05 4.30
271 272 0.242286 ATCGGATCTCGCAGGATTCG 59.758 55.000 9.50 9.50 43.74 3.34
272 273 1.671261 CCATCGGATCTCGCAGGATTC 60.671 57.143 0.00 0.00 39.05 2.52
273 274 0.319728 CCATCGGATCTCGCAGGATT 59.680 55.000 0.00 0.00 39.05 3.01
274 275 0.540597 TCCATCGGATCTCGCAGGAT 60.541 55.000 10.45 0.00 36.89 3.24
275 276 1.152756 TCCATCGGATCTCGCAGGA 60.153 57.895 10.45 10.45 38.52 3.86
276 277 1.175347 TCTCCATCGGATCTCGCAGG 61.175 60.000 0.00 0.91 39.05 4.85
277 278 0.039617 GTCTCCATCGGATCTCGCAG 60.040 60.000 0.00 0.00 39.05 5.18
278 279 0.751643 TGTCTCCATCGGATCTCGCA 60.752 55.000 0.00 0.00 39.05 5.10
279 280 0.318275 GTGTCTCCATCGGATCTCGC 60.318 60.000 0.00 0.00 39.05 5.03
280 281 0.040870 CGTGTCTCCATCGGATCTCG 60.041 60.000 0.00 0.00 40.90 4.04
281 282 0.318275 GCGTGTCTCCATCGGATCTC 60.318 60.000 0.00 0.00 0.00 2.75
282 283 1.736586 GCGTGTCTCCATCGGATCT 59.263 57.895 0.00 0.00 0.00 2.75
283 284 1.300233 GGCGTGTCTCCATCGGATC 60.300 63.158 0.00 0.00 0.00 3.36
284 285 1.739338 GAGGCGTGTCTCCATCGGAT 61.739 60.000 0.00 0.00 0.00 4.18
285 286 2.362503 AGGCGTGTCTCCATCGGA 60.363 61.111 0.00 0.00 0.00 4.55
286 287 2.105128 GAGGCGTGTCTCCATCGG 59.895 66.667 0.00 0.00 0.00 4.18
292 293 2.430921 CGTGTGGAGGCGTGTCTC 60.431 66.667 0.00 0.00 0.00 3.36
293 294 3.208884 GACGTGTGGAGGCGTGTCT 62.209 63.158 0.00 0.00 41.70 3.41
294 295 2.733593 GACGTGTGGAGGCGTGTC 60.734 66.667 0.00 0.00 41.70 3.67
295 296 4.295119 GGACGTGTGGAGGCGTGT 62.295 66.667 0.00 0.00 41.70 4.49
296 297 3.916392 GAGGACGTGTGGAGGCGTG 62.916 68.421 0.00 0.00 41.70 5.34
297 298 3.681835 GAGGACGTGTGGAGGCGT 61.682 66.667 0.00 0.00 44.50 5.68
298 299 4.436998 GGAGGACGTGTGGAGGCG 62.437 72.222 0.00 0.00 0.00 5.52
299 300 4.436998 CGGAGGACGTGTGGAGGC 62.437 72.222 0.00 0.00 37.93 4.70
300 301 2.675423 TCGGAGGACGTGTGGAGG 60.675 66.667 0.00 0.00 44.69 4.30
301 302 2.567049 GTCGGAGGACGTGTGGAG 59.433 66.667 0.00 0.00 44.69 3.86
309 310 1.812922 TCTAGCGTCGTCGGAGGAC 60.813 63.158 18.32 18.32 39.89 3.85
310 311 1.812922 GTCTAGCGTCGTCGGAGGA 60.813 63.158 3.90 0.00 37.56 3.71
311 312 2.708255 GTCTAGCGTCGTCGGAGG 59.292 66.667 3.90 0.00 37.56 4.30
312 313 2.320383 CGTCTAGCGTCGTCGGAG 59.680 66.667 3.90 0.00 37.56 4.63
313 314 3.857854 GCGTCTAGCGTCGTCGGA 61.858 66.667 3.90 0.00 43.66 4.55
323 324 0.319040 CATCCCGATGGTGCGTCTAG 60.319 60.000 0.00 0.00 35.24 2.43
324 325 1.739667 CATCCCGATGGTGCGTCTA 59.260 57.895 0.00 0.00 35.24 2.59
325 326 2.501128 CATCCCGATGGTGCGTCT 59.499 61.111 0.00 0.00 35.24 4.18
333 334 1.066858 CGTTCTATCCCCATCCCGATG 60.067 57.143 0.00 0.00 38.51 3.84
334 335 1.267121 CGTTCTATCCCCATCCCGAT 58.733 55.000 0.00 0.00 0.00 4.18
335 336 1.469335 GCGTTCTATCCCCATCCCGA 61.469 60.000 0.00 0.00 0.00 5.14
336 337 1.004918 GCGTTCTATCCCCATCCCG 60.005 63.158 0.00 0.00 0.00 5.14
337 338 1.004918 CGCGTTCTATCCCCATCCC 60.005 63.158 0.00 0.00 0.00 3.85
338 339 0.038159 CTCGCGTTCTATCCCCATCC 60.038 60.000 5.77 0.00 0.00 3.51
339 340 0.959553 TCTCGCGTTCTATCCCCATC 59.040 55.000 5.77 0.00 0.00 3.51
340 341 0.962489 CTCTCGCGTTCTATCCCCAT 59.038 55.000 5.77 0.00 0.00 4.00
341 342 0.106868 TCTCTCGCGTTCTATCCCCA 60.107 55.000 5.77 0.00 0.00 4.96
342 343 0.311477 GTCTCTCGCGTTCTATCCCC 59.689 60.000 5.77 0.00 0.00 4.81
343 344 1.022735 TGTCTCTCGCGTTCTATCCC 58.977 55.000 5.77 0.00 0.00 3.85
344 345 3.357166 AATGTCTCTCGCGTTCTATCC 57.643 47.619 5.77 0.00 0.00 2.59
345 346 5.569823 GGAATAATGTCTCTCGCGTTCTATC 59.430 44.000 5.77 0.00 0.00 2.08
346 347 5.241949 AGGAATAATGTCTCTCGCGTTCTAT 59.758 40.000 5.77 0.00 0.00 1.98
347 348 4.579340 AGGAATAATGTCTCTCGCGTTCTA 59.421 41.667 5.77 0.00 0.00 2.10
348 349 3.381908 AGGAATAATGTCTCTCGCGTTCT 59.618 43.478 5.77 0.00 0.00 3.01
349 350 3.707793 AGGAATAATGTCTCTCGCGTTC 58.292 45.455 5.77 0.00 0.00 3.95
350 351 3.802948 AGGAATAATGTCTCTCGCGTT 57.197 42.857 5.77 0.00 0.00 4.84
351 352 3.884091 AGTAGGAATAATGTCTCTCGCGT 59.116 43.478 5.77 0.00 0.00 6.01
352 353 4.023963 TCAGTAGGAATAATGTCTCTCGCG 60.024 45.833 0.00 0.00 0.00 5.87
353 354 5.440234 TCAGTAGGAATAATGTCTCTCGC 57.560 43.478 0.00 0.00 0.00 5.03
379 380 3.134127 GTGTGGCGGAAGGGATGC 61.134 66.667 0.00 0.00 0.00 3.91
380 381 1.746615 CTGTGTGGCGGAAGGGATG 60.747 63.158 0.00 0.00 0.00 3.51
381 382 2.671070 CTGTGTGGCGGAAGGGAT 59.329 61.111 0.00 0.00 0.00 3.85
382 383 4.329545 GCTGTGTGGCGGAAGGGA 62.330 66.667 0.00 0.00 0.00 4.20
390 391 4.912395 TGGTTGGGGCTGTGTGGC 62.912 66.667 0.00 0.00 40.96 5.01
391 392 2.118076 ATGGTTGGGGCTGTGTGG 59.882 61.111 0.00 0.00 0.00 4.17
392 393 0.612732 ATCATGGTTGGGGCTGTGTG 60.613 55.000 0.00 0.00 0.00 3.82
393 394 0.612732 CATCATGGTTGGGGCTGTGT 60.613 55.000 0.00 0.00 0.00 3.72
394 395 1.952102 GCATCATGGTTGGGGCTGTG 61.952 60.000 0.00 0.00 0.00 3.66
395 396 1.683365 GCATCATGGTTGGGGCTGT 60.683 57.895 0.00 0.00 0.00 4.40
396 397 0.106569 TAGCATCATGGTTGGGGCTG 60.107 55.000 0.00 0.00 35.33 4.85
397 398 0.630673 TTAGCATCATGGTTGGGGCT 59.369 50.000 0.00 0.00 36.82 5.19
398 399 1.136891 GTTTAGCATCATGGTTGGGGC 59.863 52.381 0.00 0.00 0.00 5.80
399 400 1.756538 GGTTTAGCATCATGGTTGGGG 59.243 52.381 0.00 0.00 0.00 4.96
400 401 2.738743 AGGTTTAGCATCATGGTTGGG 58.261 47.619 0.00 0.00 0.00 4.12
401 402 4.704540 TGTTAGGTTTAGCATCATGGTTGG 59.295 41.667 0.00 0.00 0.00 3.77
402 403 5.895636 TGTTAGGTTTAGCATCATGGTTG 57.104 39.130 0.00 0.00 0.00 3.77
403 404 6.245408 TCTTGTTAGGTTTAGCATCATGGTT 58.755 36.000 0.00 0.00 0.00 3.67
404 405 5.815581 TCTTGTTAGGTTTAGCATCATGGT 58.184 37.500 0.00 0.00 0.00 3.55
405 406 6.555315 GTTCTTGTTAGGTTTAGCATCATGG 58.445 40.000 0.00 0.00 0.00 3.66
406 407 6.092122 TCGTTCTTGTTAGGTTTAGCATCATG 59.908 38.462 0.00 0.00 0.00 3.07
407 408 6.170506 TCGTTCTTGTTAGGTTTAGCATCAT 58.829 36.000 0.00 0.00 0.00 2.45
408 409 5.543714 TCGTTCTTGTTAGGTTTAGCATCA 58.456 37.500 0.00 0.00 0.00 3.07
409 410 5.867716 TCTCGTTCTTGTTAGGTTTAGCATC 59.132 40.000 0.00 0.00 0.00 3.91
410 411 5.790593 TCTCGTTCTTGTTAGGTTTAGCAT 58.209 37.500 0.00 0.00 0.00 3.79
411 412 5.204409 TCTCGTTCTTGTTAGGTTTAGCA 57.796 39.130 0.00 0.00 0.00 3.49
412 413 6.347483 CCTTTCTCGTTCTTGTTAGGTTTAGC 60.347 42.308 0.00 0.00 0.00 3.09
413 414 6.147328 CCCTTTCTCGTTCTTGTTAGGTTTAG 59.853 42.308 0.00 0.00 0.00 1.85
414 415 5.993441 CCCTTTCTCGTTCTTGTTAGGTTTA 59.007 40.000 0.00 0.00 0.00 2.01
415 416 4.820173 CCCTTTCTCGTTCTTGTTAGGTTT 59.180 41.667 0.00 0.00 0.00 3.27
416 417 4.386711 CCCTTTCTCGTTCTTGTTAGGTT 58.613 43.478 0.00 0.00 0.00 3.50
417 418 3.244457 CCCCTTTCTCGTTCTTGTTAGGT 60.244 47.826 0.00 0.00 0.00 3.08
418 419 3.244457 ACCCCTTTCTCGTTCTTGTTAGG 60.244 47.826 0.00 0.00 0.00 2.69
419 420 3.995048 GACCCCTTTCTCGTTCTTGTTAG 59.005 47.826 0.00 0.00 0.00 2.34
420 421 3.244318 GGACCCCTTTCTCGTTCTTGTTA 60.244 47.826 0.00 0.00 0.00 2.41
421 422 2.486727 GGACCCCTTTCTCGTTCTTGTT 60.487 50.000 0.00 0.00 0.00 2.83
422 423 1.071857 GGACCCCTTTCTCGTTCTTGT 59.928 52.381 0.00 0.00 0.00 3.16
423 424 1.610886 GGGACCCCTTTCTCGTTCTTG 60.611 57.143 0.00 0.00 0.00 3.02
424 425 0.691332 GGGACCCCTTTCTCGTTCTT 59.309 55.000 0.00 0.00 0.00 2.52
425 426 0.178900 AGGGACCCCTTTCTCGTTCT 60.179 55.000 7.00 0.00 45.70 3.01
426 427 2.373921 AGGGACCCCTTTCTCGTTC 58.626 57.895 7.00 0.00 45.70 3.95
427 428 4.662617 AGGGACCCCTTTCTCGTT 57.337 55.556 7.00 0.00 45.70 3.85
438 439 4.554036 GCGCTGATGGGAGGGACC 62.554 72.222 0.00 0.00 38.08 4.46
439 440 4.899239 CGCGCTGATGGGAGGGAC 62.899 72.222 5.56 0.00 0.00 4.46
457 458 4.828296 TACGGAGGACCTCGGCCC 62.828 72.222 24.86 7.83 34.78 5.80
458 459 3.525545 GTACGGAGGACCTCGGCC 61.526 72.222 24.86 14.24 34.78 6.13
459 460 3.525545 GGTACGGAGGACCTCGGC 61.526 72.222 24.86 12.20 34.78 5.54
460 461 2.274760 AGGTACGGAGGACCTCGG 59.725 66.667 23.68 23.68 44.33 4.63
464 465 0.464452 CCATGAAGGTACGGAGGACC 59.536 60.000 0.00 0.00 37.22 4.46
465 466 0.179081 GCCATGAAGGTACGGAGGAC 60.179 60.000 0.00 0.00 40.61 3.85
466 467 1.335132 GGCCATGAAGGTACGGAGGA 61.335 60.000 0.00 0.00 40.61 3.71
467 468 1.146263 GGCCATGAAGGTACGGAGG 59.854 63.158 0.00 0.00 40.61 4.30
468 469 1.410004 TAGGCCATGAAGGTACGGAG 58.590 55.000 5.01 0.00 40.61 4.63
469 470 1.868713 TTAGGCCATGAAGGTACGGA 58.131 50.000 5.01 0.00 40.61 4.69
470 471 2.561569 CTTTAGGCCATGAAGGTACGG 58.438 52.381 5.01 0.00 40.61 4.02
471 472 2.561569 CCTTTAGGCCATGAAGGTACG 58.438 52.381 18.63 0.00 39.34 3.67
484 485 0.250901 CATCCCCGATGGCCTTTAGG 60.251 60.000 3.32 5.70 36.51 2.69
485 486 3.329300 CATCCCCGATGGCCTTTAG 57.671 57.895 3.32 0.00 36.51 1.85
493 494 2.772191 TCCACCCCATCCCCGATG 60.772 66.667 0.00 0.00 39.52 3.84
494 495 2.772622 GTCCACCCCATCCCCGAT 60.773 66.667 0.00 0.00 0.00 4.18
521 522 4.899239 GTCCTCCCATCGGCGCTG 62.899 72.222 10.86 10.86 0.00 5.18
524 525 4.227134 CTGGTCCTCCCATCGGCG 62.227 72.222 0.00 0.00 44.15 6.46
525 526 3.866582 CCTGGTCCTCCCATCGGC 61.867 72.222 0.00 0.00 44.15 5.54
526 527 1.271840 TTTCCTGGTCCTCCCATCGG 61.272 60.000 0.00 0.00 44.15 4.18
527 528 0.618458 TTTTCCTGGTCCTCCCATCG 59.382 55.000 0.00 0.00 44.15 3.84
528 529 1.636003 AGTTTTCCTGGTCCTCCCATC 59.364 52.381 0.00 0.00 44.15 3.51
529 530 1.760405 AGTTTTCCTGGTCCTCCCAT 58.240 50.000 0.00 0.00 44.15 4.00
530 531 1.144913 CAAGTTTTCCTGGTCCTCCCA 59.855 52.381 0.00 0.00 42.51 4.37
531 532 1.423921 TCAAGTTTTCCTGGTCCTCCC 59.576 52.381 0.00 0.00 0.00 4.30
532 533 2.372172 TCTCAAGTTTTCCTGGTCCTCC 59.628 50.000 0.00 0.00 0.00 4.30
533 534 3.771577 TCTCAAGTTTTCCTGGTCCTC 57.228 47.619 0.00 0.00 0.00 3.71
534 535 3.913163 AGATCTCAAGTTTTCCTGGTCCT 59.087 43.478 0.00 0.00 0.00 3.85
535 536 4.293662 AGATCTCAAGTTTTCCTGGTCC 57.706 45.455 0.00 0.00 0.00 4.46
536 537 6.488344 AGAAAAGATCTCAAGTTTTCCTGGTC 59.512 38.462 11.49 0.00 39.84 4.02
537 538 6.368805 AGAAAAGATCTCAAGTTTTCCTGGT 58.631 36.000 11.49 0.00 39.84 4.00
538 539 6.890979 AGAAAAGATCTCAAGTTTTCCTGG 57.109 37.500 11.49 0.00 39.84 4.45
539 540 7.710896 ACAAGAAAAGATCTCAAGTTTTCCTG 58.289 34.615 11.49 11.44 39.84 3.86
540 541 7.888250 ACAAGAAAAGATCTCAAGTTTTCCT 57.112 32.000 11.49 0.00 39.84 3.36
570 571 6.183360 GCAGCATAGTGATGGAAGAGATTTTT 60.183 38.462 0.00 0.00 33.75 1.94
571 572 5.298777 GCAGCATAGTGATGGAAGAGATTTT 59.701 40.000 0.00 0.00 33.75 1.82
572 573 4.820716 GCAGCATAGTGATGGAAGAGATTT 59.179 41.667 0.00 0.00 33.75 2.17
573 574 4.141551 TGCAGCATAGTGATGGAAGAGATT 60.142 41.667 0.00 0.00 29.38 2.40
574 575 3.390311 TGCAGCATAGTGATGGAAGAGAT 59.610 43.478 0.00 0.00 29.38 2.75
575 576 2.767960 TGCAGCATAGTGATGGAAGAGA 59.232 45.455 0.00 0.00 29.38 3.10
673 687 5.994250 TCTTGCTTACTGGCTATGAGAAAT 58.006 37.500 0.00 0.00 0.00 2.17
706 720 2.180131 CTTCTTCACAGCAGCACGCC 62.180 60.000 0.00 0.00 44.04 5.68
755 775 1.160137 GCGAAGTTGCTTGGTCTCAT 58.840 50.000 0.00 0.00 0.00 2.90
774 794 1.134098 AGGAGGTGACATAATTGCGGG 60.134 52.381 0.00 0.00 0.00 6.13
778 798 8.567285 AAGAAGTTAAGGAGGTGACATAATTG 57.433 34.615 0.00 0.00 0.00 2.32
811 831 1.334160 TATAAATGAGGCGGGCGAGA 58.666 50.000 0.00 0.00 0.00 4.04
818 838 8.630037 GGGGGATTATAATTTATAAATGAGGCG 58.370 37.037 11.42 0.00 34.59 5.52
819 839 9.487442 TGGGGGATTATAATTTATAAATGAGGC 57.513 33.333 11.42 0.71 34.59 4.70
823 843 9.581099 GCGTTGGGGGATTATAATTTATAAATG 57.419 33.333 11.42 2.69 34.59 2.32
824 844 9.541884 AGCGTTGGGGGATTATAATTTATAAAT 57.458 29.630 11.79 4.81 34.59 1.40
825 845 8.943594 AGCGTTGGGGGATTATAATTTATAAA 57.056 30.769 11.79 0.00 34.59 1.40
826 846 8.943594 AAGCGTTGGGGGATTATAATTTATAA 57.056 30.769 10.49 10.49 35.32 0.98
827 847 8.943594 AAAGCGTTGGGGGATTATAATTTATA 57.056 30.769 0.00 0.00 0.00 0.98
828 848 7.507616 TGAAAGCGTTGGGGGATTATAATTTAT 59.492 33.333 0.00 0.00 0.00 1.40
838 858 1.304134 GGTGAAAGCGTTGGGGGAT 60.304 57.895 0.00 0.00 0.00 3.85
847 867 2.969628 AGTAGATGGAGGTGAAAGCG 57.030 50.000 0.00 0.00 40.95 4.68
858 878 8.246430 TGGTAGTATTGGAGTTAAGTAGATGG 57.754 38.462 0.00 0.00 0.00 3.51
876 898 2.821437 AGCTCTTGCCTCTTGGTAGTA 58.179 47.619 0.00 0.00 40.80 1.82
879 901 1.279271 GGAAGCTCTTGCCTCTTGGTA 59.721 52.381 0.00 0.00 40.80 3.25
882 904 3.557228 ATAGGAAGCTCTTGCCTCTTG 57.443 47.619 0.00 0.00 40.80 3.02
883 905 7.676043 TGTATATATAGGAAGCTCTTGCCTCTT 59.324 37.037 0.00 0.00 40.80 2.85
884 906 7.185565 TGTATATATAGGAAGCTCTTGCCTCT 58.814 38.462 0.00 0.00 40.80 3.69
885 907 7.411486 TGTATATATAGGAAGCTCTTGCCTC 57.589 40.000 0.00 0.00 40.80 4.70
886 908 7.577807 CGTTGTATATATAGGAAGCTCTTGCCT 60.578 40.741 0.00 0.00 40.80 4.75
887 909 6.531948 CGTTGTATATATAGGAAGCTCTTGCC 59.468 42.308 0.00 0.00 40.80 4.52
888 910 6.035112 GCGTTGTATATATAGGAAGCTCTTGC 59.965 42.308 0.00 0.00 40.05 4.01
961 994 0.236711 CTGGTTGTTGCTGCTTCTCG 59.763 55.000 0.00 0.00 0.00 4.04
971 1007 1.843992 GTCTTGCTTGCTGGTTGTTG 58.156 50.000 0.00 0.00 0.00 3.33
972 1008 0.381801 CGTCTTGCTTGCTGGTTGTT 59.618 50.000 0.00 0.00 0.00 2.83
973 1009 0.748005 ACGTCTTGCTTGCTGGTTGT 60.748 50.000 0.00 0.00 0.00 3.32
974 1010 1.225855 TACGTCTTGCTTGCTGGTTG 58.774 50.000 0.00 0.00 0.00 3.77
975 1011 2.185004 ATACGTCTTGCTTGCTGGTT 57.815 45.000 0.00 0.00 0.00 3.67
976 1012 3.328382 TTATACGTCTTGCTTGCTGGT 57.672 42.857 0.00 0.00 0.00 4.00
977 1013 3.483574 CGTTTATACGTCTTGCTTGCTGG 60.484 47.826 0.00 0.00 42.72 4.85
1018 1115 1.675310 CCAACTCCATGGCGCTCAA 60.675 57.895 6.96 0.00 32.78 3.02
1092 1189 1.606601 CACGTCCTCCTCACCCTCA 60.607 63.158 0.00 0.00 0.00 3.86
1097 1203 2.048127 GCACCACGTCCTCCTCAC 60.048 66.667 0.00 0.00 0.00 3.51
1183 1295 0.104855 TCGATGCTGAGGGATTTCCG 59.895 55.000 0.00 0.00 41.52 4.30
1368 1633 2.357517 CAACCGTGCTCGCCTCTT 60.358 61.111 1.89 0.00 35.54 2.85
1387 1652 1.558233 AGTACCACTCTTTCTCCCCG 58.442 55.000 0.00 0.00 0.00 5.73
1465 1733 2.592308 GCCTTCCAGAAGCCGGAT 59.408 61.111 5.05 0.00 37.11 4.18
1583 1869 4.974721 CTTGGTGCCCTTGCCGGT 62.975 66.667 1.90 0.00 36.33 5.28
1994 2365 0.596577 TGACTGACGTACTGGTGCTC 59.403 55.000 0.00 0.00 0.00 4.26
2019 2399 2.109739 TTGTTGCCGTTCACTGCGT 61.110 52.632 0.00 0.00 0.00 5.24
2021 2401 0.100503 AAGTTGTTGCCGTTCACTGC 59.899 50.000 0.00 0.00 0.00 4.40
2023 2403 2.038387 AGAAGTTGTTGCCGTTCACT 57.962 45.000 0.00 0.00 0.00 3.41
2030 2410 2.814336 CCCTGTAGAAGAAGTTGTTGCC 59.186 50.000 0.00 0.00 0.00 4.52
2034 2414 5.091552 TGGTATCCCTGTAGAAGAAGTTGT 58.908 41.667 0.00 0.00 0.00 3.32
2070 2450 1.304052 TTCCATTGCCCCTGGAACG 60.304 57.895 7.44 0.00 45.56 3.95
2117 2506 4.342378 TGATAGTGTATCCTGTGGCTTCTC 59.658 45.833 0.00 0.00 34.26 2.87
2122 2511 3.123804 CGTTGATAGTGTATCCTGTGGC 58.876 50.000 0.00 0.00 34.26 5.01
2129 2518 2.223641 TGACGGCCGTTGATAGTGTATC 60.224 50.000 34.65 15.29 35.74 2.24
2132 2521 0.389426 GTGACGGCCGTTGATAGTGT 60.389 55.000 34.65 5.28 0.00 3.55
2135 2524 0.108329 AAGGTGACGGCCGTTGATAG 60.108 55.000 34.65 0.00 0.00 2.08
2150 2539 1.444933 TGGTCATTCTGGTGGAAGGT 58.555 50.000 0.00 0.00 37.08 3.50
2237 2635 2.786495 CCGGATCGGTGACCTCCAG 61.786 68.421 10.17 3.54 42.73 3.86
2294 2698 1.878102 GCCGAAGAGTTTCCTGCTGAA 60.878 52.381 0.00 0.00 0.00 3.02
2296 2700 0.321122 AGCCGAAGAGTTTCCTGCTG 60.321 55.000 0.00 0.00 36.87 4.41
2297 2701 0.036858 GAGCCGAAGAGTTTCCTGCT 60.037 55.000 0.00 0.00 39.35 4.24
2298 2702 1.021920 GGAGCCGAAGAGTTTCCTGC 61.022 60.000 0.00 0.00 0.00 4.85
2299 2703 0.737715 CGGAGCCGAAGAGTTTCCTG 60.738 60.000 2.00 0.00 42.83 3.86
2300 2704 1.186267 ACGGAGCCGAAGAGTTTCCT 61.186 55.000 16.83 0.00 42.83 3.36
2301 2705 0.529378 TACGGAGCCGAAGAGTTTCC 59.471 55.000 16.83 0.00 42.83 3.13
2302 2706 1.469423 CCTACGGAGCCGAAGAGTTTC 60.469 57.143 16.83 0.00 42.83 2.78
2423 2924 2.651137 CGTCGCTGTTACGCCGTTT 61.651 57.895 0.00 0.00 33.04 3.60
2431 2932 1.287815 CCAGACACCGTCGCTGTTA 59.712 57.895 0.00 0.00 37.67 2.41
2542 3054 2.017049 GACCCGATTCAACCAATCCAG 58.983 52.381 0.00 0.00 38.17 3.86
2632 3144 1.284198 AGATGAGCCCAGCAATGAAGT 59.716 47.619 0.00 0.00 0.00 3.01
2732 3351 9.120538 ACTTTGCTCTAACTAGAAAAACAATCA 57.879 29.630 0.00 0.00 0.00 2.57
2743 3362 9.930693 CCCCTTATTATACTTTGCTCTAACTAG 57.069 37.037 0.00 0.00 0.00 2.57
2775 3394 9.753674 ATTCTGTTCCTCAAATATAGGTTTTCA 57.246 29.630 0.00 0.00 35.48 2.69
2798 3417 7.808381 GTGCTTAACTCCCTAAAAACTCAATTC 59.192 37.037 0.00 0.00 0.00 2.17
2877 3496 6.940430 ATCATTTGGGGAAGATTTTCAAGT 57.060 33.333 0.00 0.00 34.90 3.16
2922 3541 1.275291 CTTCCTACGTTTGCTCCAGGA 59.725 52.381 0.00 0.00 33.59 3.86
2934 3553 2.579787 CGCGGCTGTCTTCCTACG 60.580 66.667 0.00 0.00 0.00 3.51
2940 3559 3.660111 GGTTTGCGCGGCTGTCTT 61.660 61.111 8.83 0.00 0.00 3.01
2954 5018 2.672996 GCATCGTGGCACAGGGTT 60.673 61.111 19.09 0.00 45.22 4.11
2955 5019 4.722700 GGCATCGTGGCACAGGGT 62.723 66.667 19.09 0.00 45.22 4.34
3008 5072 6.633500 ATTCTTCGGTTTTTCATTCACTGA 57.367 33.333 0.00 0.00 0.00 3.41
3023 5087 5.496387 CAGACGAATCATGAAATTCTTCGG 58.504 41.667 24.43 13.99 40.19 4.30
3042 5106 1.812922 CGACCATGGCTCTGCAGAC 60.813 63.158 13.74 9.94 0.00 3.51
3066 5130 0.246635 CCACACGAATCGTCTTCCCT 59.753 55.000 4.88 0.00 38.32 4.20
3100 5164 2.029073 ACGCACACTTGGACGAGG 59.971 61.111 0.00 0.00 0.00 4.63
3101 5165 2.943345 GCACGCACACTTGGACGAG 61.943 63.158 0.00 0.00 0.00 4.18
3103 5167 4.354212 CGCACGCACACTTGGACG 62.354 66.667 0.00 0.00 0.00 4.79
3114 5178 4.993945 CAACACGCAGACGCACGC 62.994 66.667 0.00 0.00 45.53 5.34
3115 5179 3.626244 ACAACACGCAGACGCACG 61.626 61.111 0.00 0.00 45.53 5.34
3116 5180 2.053116 CACAACACGCAGACGCAC 60.053 61.111 0.00 0.00 45.53 5.34
3117 5181 2.510464 ACACAACACGCAGACGCA 60.510 55.556 0.00 0.00 45.53 5.24
3118 5182 1.831389 ATGACACAACACGCAGACGC 61.831 55.000 0.00 0.00 45.53 5.19
3120 5184 0.161658 CGATGACACAACACGCAGAC 59.838 55.000 0.00 0.00 0.00 3.51
3121 5185 0.249280 ACGATGACACAACACGCAGA 60.249 50.000 0.00 0.00 0.00 4.26
3122 5186 0.111134 CACGATGACACAACACGCAG 60.111 55.000 0.00 0.00 0.00 5.18
3170 5234 1.988846 CAAGGGGAAGAAGGGACTCTT 59.011 52.381 0.00 0.00 38.49 2.85
3192 5256 4.715523 TGGGTAGCTTGCGGTGGC 62.716 66.667 0.00 0.00 40.52 5.01
3255 5319 4.436998 GTGAGACGGCCGTCCTGG 62.437 72.222 45.66 13.31 45.59 4.45
3256 5320 4.778415 CGTGAGACGGCCGTCCTG 62.778 72.222 45.66 31.28 45.59 3.86
3266 5330 2.249557 TAGCTTCGTCCGCGTGAGAC 62.250 60.000 4.92 4.47 39.49 3.36
3267 5331 2.036571 TAGCTTCGTCCGCGTGAGA 61.037 57.895 4.92 0.00 39.49 3.27
3268 5332 1.868251 GTAGCTTCGTCCGCGTGAG 60.868 63.158 4.92 0.00 39.49 3.51
3269 5333 2.177531 GTAGCTTCGTCCGCGTGA 59.822 61.111 4.92 0.00 39.49 4.35
3270 5334 2.126618 TGTAGCTTCGTCCGCGTG 60.127 61.111 4.92 0.00 39.49 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.