Multiple sequence alignment - TraesCS5B01G414000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G414000 chr5B 100.000 5252 0 0 1 5252 588649723 588644472 0.000000e+00 9699.0
1 TraesCS5B01G414000 chr5B 92.061 781 46 8 4478 5243 588619254 588618475 0.000000e+00 1085.0
2 TraesCS5B01G414000 chr5B 94.048 168 6 4 2213 2378 588647326 588647161 8.730000e-63 252.0
3 TraesCS5B01G414000 chr5B 94.048 168 6 4 2398 2563 588647511 588647346 8.730000e-63 252.0
4 TraesCS5B01G414000 chr5B 81.675 191 14 11 2213 2396 543565830 543566006 7.090000e-29 139.0
5 TraesCS5B01G414000 chr5D 90.416 1993 158 17 3275 5246 480463397 480461417 0.000000e+00 2591.0
6 TraesCS5B01G414000 chr5D 94.093 1439 48 5 773 2195 480466219 480464802 0.000000e+00 2152.0
7 TraesCS5B01G414000 chr5D 94.131 426 20 5 2802 3224 480463987 480463564 1.230000e-180 643.0
8 TraesCS5B01G414000 chr5D 84.652 417 36 13 1 391 480469130 480468716 1.770000e-104 390.0
9 TraesCS5B01G414000 chr5D 84.127 378 25 14 393 753 480466567 480466208 3.030000e-87 333.0
10 TraesCS5B01G414000 chr5D 80.625 160 24 5 4417 4569 6979666 6979507 3.320000e-22 117.0
11 TraesCS5B01G414000 chr5D 92.537 67 4 1 2212 2278 234820703 234820768 1.560000e-15 95.3
12 TraesCS5B01G414000 chr5D 78.205 156 12 13 2212 2366 384741136 384741002 4.360000e-11 80.5
13 TraesCS5B01G414000 chr5A 89.463 1974 185 15 3288 5243 599206283 599204315 0.000000e+00 2471.0
14 TraesCS5B01G414000 chr5A 94.475 1448 53 14 773 2199 599208782 599207341 0.000000e+00 2206.0
15 TraesCS5B01G414000 chr5A 87.948 697 54 12 2587 3270 599207025 599206346 0.000000e+00 795.0
16 TraesCS5B01G414000 chr5A 87.234 188 10 9 411 586 599209082 599208897 8.920000e-48 202.0
17 TraesCS5B01G414000 chr5A 76.620 355 69 10 1729 2076 693641900 693641553 3.230000e-42 183.0
18 TraesCS5B01G414000 chr5A 82.297 209 18 8 223 413 599209418 599209211 4.210000e-36 163.0
19 TraesCS5B01G414000 chr5A 87.705 122 6 3 641 753 599208892 599208771 3.300000e-27 134.0
20 TraesCS5B01G414000 chr2A 79.167 888 145 31 1343 2196 569902394 569903275 3.530000e-161 579.0
21 TraesCS5B01G414000 chr2A 84.034 119 10 3 2282 2396 693205822 693205935 7.190000e-19 106.0
22 TraesCS5B01G414000 chr2A 88.235 68 4 1 2333 2396 40496802 40496869 1.570000e-10 78.7
23 TraesCS5B01G414000 chr2D 81.799 478 82 4 1721 2196 420312070 420311596 3.810000e-106 396.0
24 TraesCS5B01G414000 chr2D 89.091 220 24 0 1343 1562 420312494 420312275 1.860000e-69 274.0
25 TraesCS5B01G414000 chr2D 84.884 172 11 6 2391 2560 90774428 90774270 5.440000e-35 159.0
26 TraesCS5B01G414000 chr2D 83.069 189 13 8 2396 2582 471147586 471147757 2.530000e-33 154.0
27 TraesCS5B01G414000 chr2D 92.537 67 4 1 2212 2278 106123305 106123370 1.560000e-15 95.3
28 TraesCS5B01G414000 chr2D 97.222 36 1 0 4516 4551 48390652 48390617 1.580000e-05 62.1
29 TraesCS5B01G414000 chr2B 81.186 489 86 5 1710 2196 492795867 492795383 6.380000e-104 388.0
30 TraesCS5B01G414000 chr4D 75.495 404 83 11 1729 2124 508271437 508271042 3.230000e-42 183.0
31 TraesCS5B01G414000 chr1D 76.901 342 62 15 1666 2000 299584588 299584257 1.500000e-40 178.0
32 TraesCS5B01G414000 chr7B 86.905 168 7 10 2396 2560 633239262 633239107 1.940000e-39 174.0
33 TraesCS5B01G414000 chr7B 86.145 166 8 8 2396 2560 538819776 538819625 1.170000e-36 165.0
34 TraesCS5B01G414000 chr7B 79.221 154 24 8 1385 1534 369416916 369416767 3.350000e-17 100.0
35 TraesCS5B01G414000 chr4B 76.380 326 68 9 1665 1984 656821702 656822024 3.250000e-37 167.0
36 TraesCS5B01G414000 chr4B 84.127 189 11 9 2396 2582 399468915 399469086 1.170000e-36 165.0
37 TraesCS5B01G414000 chr4B 83.422 187 12 7 2213 2394 415901195 415901367 7.040000e-34 156.0
38 TraesCS5B01G414000 chr3D 86.145 166 9 5 2396 2560 453280404 453280556 3.250000e-37 167.0
39 TraesCS5B01G414000 chr6B 85.629 167 10 7 2396 2560 116821126 116820972 4.210000e-36 163.0
40 TraesCS5B01G414000 chr1A 85.799 169 7 8 2394 2560 589956629 589956782 4.210000e-36 163.0
41 TraesCS5B01G414000 chr6A 80.423 189 17 11 2213 2396 64322370 64322543 5.520000e-25 126.0
42 TraesCS5B01G414000 chr7A 80.541 185 14 8 2213 2392 575406896 575407063 7.140000e-24 122.0
43 TraesCS5B01G414000 chr7A 77.419 186 26 11 2213 2394 120998850 120999023 4.330000e-16 97.1
44 TraesCS5B01G414000 chr3A 77.457 173 32 5 4402 4569 661057728 661057558 4.330000e-16 97.1
45 TraesCS5B01G414000 chr6D 92.424 66 5 0 2213 2278 383744289 383744224 1.560000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G414000 chr5B 588644472 588649723 5251 True 3401.000000 9699 96.0320 1 5252 3 chr5B.!!$R2 5251
1 TraesCS5B01G414000 chr5B 588618475 588619254 779 True 1085.000000 1085 92.0610 4478 5243 1 chr5B.!!$R1 765
2 TraesCS5B01G414000 chr5D 480461417 480469130 7713 True 1221.800000 2591 89.4838 1 5246 5 chr5D.!!$R3 5245
3 TraesCS5B01G414000 chr5A 599204315 599209418 5103 True 995.166667 2471 88.1870 223 5243 6 chr5A.!!$R2 5020
4 TraesCS5B01G414000 chr2A 569902394 569903275 881 False 579.000000 579 79.1670 1343 2196 1 chr2A.!!$F2 853
5 TraesCS5B01G414000 chr2D 420311596 420312494 898 True 335.000000 396 85.4450 1343 2196 2 chr2D.!!$R3 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 3116 0.621862 GGGGTCTCCAATCCCTGACT 60.622 60.0 0.00 0.0 43.00 3.41 F
2165 4561 0.037447 TCAATGGATTCCACACGGCA 59.963 50.0 7.76 0.0 35.80 5.69 F
2268 4963 0.963962 TGTCACGTCTAACCTCCCAC 59.036 55.0 0.00 0.0 0.00 4.61 F
3360 6763 0.183492 GATCCCAATGCAGGTGCCTA 59.817 55.0 0.00 0.0 41.18 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2584 5279 0.818938 TCGCCGGCATCTAGTTAACA 59.181 50.0 28.98 0.00 0.00 2.41 R
3024 6298 0.457853 ACGAACGGTGATGATCCACG 60.458 55.0 4.65 4.65 37.91 4.94 R
4233 7636 0.106708 CCTACACATCCATCCCCACG 59.893 60.0 0.00 0.00 0.00 4.94 R
4885 8333 0.106519 GCCAGGTTAGCCATGATGGT 60.107 55.0 13.84 2.65 40.46 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.402981 AACTATGAAAAGGGGGATTACAGT 57.597 37.500 0.00 0.00 0.00 3.55
25 26 6.402981 ACTATGAAAAGGGGGATTACAGTT 57.597 37.500 0.00 0.00 0.00 3.16
26 27 6.424032 ACTATGAAAAGGGGGATTACAGTTC 58.576 40.000 0.00 0.00 0.00 3.01
27 28 4.042271 TGAAAAGGGGGATTACAGTTCC 57.958 45.455 0.00 0.00 0.00 3.62
30 31 4.759793 AAAGGGGGATTACAGTTCCTTT 57.240 40.909 0.00 0.00 39.08 3.11
31 32 4.759793 AAGGGGGATTACAGTTCCTTTT 57.240 40.909 0.00 0.00 31.30 2.27
32 33 5.871324 AAGGGGGATTACAGTTCCTTTTA 57.129 39.130 0.00 0.00 31.30 1.52
66 67 3.644884 ACTCTAATGCCCTATCGTTCG 57.355 47.619 0.00 0.00 0.00 3.95
76 77 3.454375 CCCTATCGTTCGTGCAAGTTAT 58.546 45.455 0.00 0.00 0.00 1.89
80 81 1.001068 TCGTTCGTGCAAGTTATCCCA 59.999 47.619 0.00 0.00 0.00 4.37
86 87 2.159531 CGTGCAAGTTATCCCATGTGTG 60.160 50.000 0.00 0.00 0.00 3.82
88 89 3.505680 GTGCAAGTTATCCCATGTGTGAA 59.494 43.478 0.00 0.00 0.00 3.18
92 93 5.336690 GCAAGTTATCCCATGTGTGAAATGT 60.337 40.000 0.00 0.00 0.00 2.71
107 108 1.089920 AATGTTGTGAGCCGCTCATC 58.910 50.000 25.41 18.27 42.73 2.92
134 135 6.399564 GCCATAAACACATGCGTTTCTAAAAC 60.400 38.462 14.80 0.00 39.70 2.43
135 136 6.183359 CCATAAACACATGCGTTTCTAAAACG 60.183 38.462 14.80 17.91 45.56 3.60
142 143 2.419324 TGCGTTTCTAAAACGTTGGTGT 59.581 40.909 21.60 0.00 44.69 4.16
143 144 2.779471 GCGTTTCTAAAACGTTGGTGTG 59.221 45.455 21.60 0.00 44.69 3.82
177 178 7.172019 AGCCACAAAATTTCAGAATTGTTGATC 59.828 33.333 12.92 0.00 35.69 2.92
214 215 4.220693 TGATGTTACTGTCCATCAAGGG 57.779 45.455 16.26 0.00 43.21 3.95
220 221 1.076024 ACTGTCCATCAAGGGTGCAAT 59.924 47.619 0.00 0.00 38.24 3.56
221 222 2.308570 ACTGTCCATCAAGGGTGCAATA 59.691 45.455 0.00 0.00 38.24 1.90
269 273 8.958043 CAAGTTTTTCGAGAAACAAAATAGAGG 58.042 33.333 27.31 7.36 40.98 3.69
284 289 8.540388 ACAAAATAGAGGAGAAAGTACTATGCA 58.460 33.333 0.00 0.00 0.00 3.96
286 291 4.640789 AGAGGAGAAAGTACTATGCACG 57.359 45.455 0.00 0.00 0.00 5.34
287 292 3.381908 AGAGGAGAAAGTACTATGCACGG 59.618 47.826 0.00 0.00 0.00 4.94
288 293 3.362706 AGGAGAAAGTACTATGCACGGA 58.637 45.455 0.00 0.00 0.00 4.69
291 296 4.352887 GAGAAAGTACTATGCACGGAGTC 58.647 47.826 0.00 0.00 41.61 3.36
292 297 2.846039 AAGTACTATGCACGGAGTCG 57.154 50.000 0.00 0.00 41.61 4.18
295 313 2.055310 TACTATGCACGGAGTCGCGG 62.055 60.000 6.13 0.00 41.61 6.46
310 328 0.941463 CGCGGGTAATGCTAGAGCTG 60.941 60.000 0.00 0.00 42.66 4.24
315 333 1.762957 GGTAATGCTAGAGCTGTGGGA 59.237 52.381 2.72 0.00 42.66 4.37
328 346 2.558359 GCTGTGGGAGCTTTGTTATGTT 59.442 45.455 0.00 0.00 45.21 2.71
331 349 5.278758 GCTGTGGGAGCTTTGTTATGTTTTA 60.279 40.000 0.00 0.00 45.21 1.52
333 351 6.508777 TGTGGGAGCTTTGTTATGTTTTAAC 58.491 36.000 0.00 0.00 0.00 2.01
334 352 5.627780 GTGGGAGCTTTGTTATGTTTTAACG 59.372 40.000 0.00 0.00 0.00 3.18
336 354 5.048573 GGGAGCTTTGTTATGTTTTAACGGA 60.049 40.000 0.00 0.00 0.00 4.69
339 357 7.597369 GGAGCTTTGTTATGTTTTAACGGAATT 59.403 33.333 0.00 0.00 0.00 2.17
340 358 9.615295 GAGCTTTGTTATGTTTTAACGGAATTA 57.385 29.630 0.00 0.00 0.00 1.40
349 375 7.052142 TGTTTTAACGGAATTAACATGGGTT 57.948 32.000 0.00 0.00 41.06 4.11
370 396 1.852965 AGTAGGATTGGTGATTGGGGG 59.147 52.381 0.00 0.00 0.00 5.40
491 2801 0.839946 AGGCGGTAGGCAATCTTCAT 59.160 50.000 0.00 0.00 46.16 2.57
561 2882 5.958372 CGGAATATGCTTATAGTACGAGTCG 59.042 44.000 11.85 11.85 0.00 4.18
587 2908 1.407618 CCACACGGAGGATGATTACGA 59.592 52.381 0.00 0.00 0.00 3.43
588 2909 2.159156 CCACACGGAGGATGATTACGAA 60.159 50.000 0.00 0.00 0.00 3.85
589 2910 3.517602 CACACGGAGGATGATTACGAAA 58.482 45.455 0.00 0.00 0.00 3.46
590 2911 4.119862 CACACGGAGGATGATTACGAAAT 58.880 43.478 0.00 0.00 0.00 2.17
591 2912 4.025730 CACACGGAGGATGATTACGAAATG 60.026 45.833 0.00 0.00 0.00 2.32
592 2913 3.494626 CACGGAGGATGATTACGAAATGG 59.505 47.826 0.00 0.00 0.00 3.16
593 2914 3.386726 ACGGAGGATGATTACGAAATGGA 59.613 43.478 0.00 0.00 0.00 3.41
594 2915 4.141801 ACGGAGGATGATTACGAAATGGAA 60.142 41.667 0.00 0.00 0.00 3.53
595 2916 4.814234 CGGAGGATGATTACGAAATGGAAA 59.186 41.667 0.00 0.00 0.00 3.13
608 2929 2.385013 ATGGAAAAATTGCGGCCTTC 57.615 45.000 0.00 0.00 0.00 3.46
740 3070 3.513225 GCGTGGCCAGCATACATT 58.487 55.556 5.11 0.00 34.19 2.71
753 3083 2.435805 GCATACATTCTCCAGTCCCTGA 59.564 50.000 0.00 0.00 32.44 3.86
755 3085 2.030027 ACATTCTCCAGTCCCTGACA 57.970 50.000 0.00 0.00 34.60 3.58
756 3086 2.555664 ACATTCTCCAGTCCCTGACAT 58.444 47.619 0.00 0.00 34.60 3.06
757 3087 3.724478 ACATTCTCCAGTCCCTGACATA 58.276 45.455 0.00 0.00 34.60 2.29
758 3088 4.302067 ACATTCTCCAGTCCCTGACATAT 58.698 43.478 0.00 0.00 34.60 1.78
759 3089 5.467738 ACATTCTCCAGTCCCTGACATATA 58.532 41.667 0.00 0.00 34.60 0.86
760 3090 6.087456 ACATTCTCCAGTCCCTGACATATAT 58.913 40.000 0.00 0.00 34.60 0.86
761 3091 7.248976 ACATTCTCCAGTCCCTGACATATATA 58.751 38.462 0.00 0.00 34.60 0.86
762 3092 7.903481 ACATTCTCCAGTCCCTGACATATATAT 59.097 37.037 0.00 0.00 34.60 0.86
763 3093 8.766476 CATTCTCCAGTCCCTGACATATATATT 58.234 37.037 0.00 0.00 34.60 1.28
764 3094 8.742125 TTCTCCAGTCCCTGACATATATATTT 57.258 34.615 0.00 0.00 34.60 1.40
765 3095 8.742125 TCTCCAGTCCCTGACATATATATTTT 57.258 34.615 0.00 0.00 34.60 1.82
766 3096 9.837681 TCTCCAGTCCCTGACATATATATTTTA 57.162 33.333 0.00 0.00 34.60 1.52
768 3098 9.046846 TCCAGTCCCTGACATATATATTTTAGG 57.953 37.037 11.17 11.17 34.60 2.69
769 3099 8.267894 CCAGTCCCTGACATATATATTTTAGGG 58.732 40.741 23.79 23.79 43.94 3.53
770 3100 8.267894 CAGTCCCTGACATATATATTTTAGGGG 58.732 40.741 26.84 18.26 43.03 4.79
771 3101 7.967747 AGTCCCTGACATATATATTTTAGGGGT 59.032 37.037 26.84 17.35 43.03 4.95
772 3102 8.265764 GTCCCTGACATATATATTTTAGGGGTC 58.734 40.741 26.84 19.70 43.03 4.46
773 3103 8.191110 TCCCTGACATATATATTTTAGGGGTCT 58.809 37.037 26.84 0.00 43.03 3.85
774 3104 8.487028 CCCTGACATATATATTTTAGGGGTCTC 58.513 40.741 22.73 0.00 39.92 3.36
775 3105 8.487028 CCTGACATATATATTTTAGGGGTCTCC 58.513 40.741 10.52 0.00 0.00 3.71
776 3106 8.982471 TGACATATATATTTTAGGGGTCTCCA 57.018 34.615 0.00 0.00 38.24 3.86
777 3107 9.400208 TGACATATATATTTTAGGGGTCTCCAA 57.600 33.333 0.00 0.00 38.24 3.53
780 3110 9.853177 CATATATATTTTAGGGGTCTCCAATCC 57.147 37.037 0.00 0.00 38.24 3.01
781 3111 3.973472 ATTTTAGGGGTCTCCAATCCC 57.027 47.619 0.00 0.00 42.73 3.85
784 3114 4.500125 GGGGTCTCCAATCCCTGA 57.500 61.111 0.00 0.00 43.00 3.86
785 3115 1.915983 GGGGTCTCCAATCCCTGAC 59.084 63.158 0.00 0.00 43.00 3.51
786 3116 0.621862 GGGGTCTCCAATCCCTGACT 60.622 60.000 0.00 0.00 43.00 3.41
1041 3387 1.721664 CGGACATGCTTGCATGAGGG 61.722 60.000 33.52 20.26 36.48 4.30
1097 3443 0.042188 CTCACGGTTCTGTGCAAACG 60.042 55.000 6.87 0.00 42.43 3.60
1167 3513 3.039588 GTCGACTTCCGCGGCAAA 61.040 61.111 23.51 10.08 38.37 3.68
1229 3575 6.776603 GCCGGACTTATCCTAGGTATGTATAT 59.223 42.308 5.05 0.00 43.73 0.86
1467 3818 1.210931 CAACTTCATGGGCACGCTG 59.789 57.895 0.00 0.00 0.00 5.18
1535 3886 4.835927 GTACCTCACCATCGCCTG 57.164 61.111 0.00 0.00 0.00 4.85
2165 4561 0.037447 TCAATGGATTCCACACGGCA 59.963 50.000 7.76 0.00 35.80 5.69
2210 4905 5.278660 GCTCAGGTATATTTGGATGCCTTTG 60.279 44.000 0.00 0.00 39.67 2.77
2211 4906 6.012337 TCAGGTATATTTGGATGCCTTTGA 57.988 37.500 0.00 0.00 39.67 2.69
2214 4909 5.829924 AGGTATATTTGGATGCCTTTGACAG 59.170 40.000 0.00 0.00 38.66 3.51
2215 4910 5.594317 GGTATATTTGGATGCCTTTGACAGT 59.406 40.000 0.00 0.00 0.00 3.55
2216 4911 6.096846 GGTATATTTGGATGCCTTTGACAGTT 59.903 38.462 0.00 0.00 0.00 3.16
2217 4912 4.961438 ATTTGGATGCCTTTGACAGTTT 57.039 36.364 0.00 0.00 0.00 2.66
2218 4913 3.731652 TTGGATGCCTTTGACAGTTTG 57.268 42.857 0.00 0.00 0.00 2.93
2219 4914 2.665165 TGGATGCCTTTGACAGTTTGT 58.335 42.857 0.00 0.00 0.00 2.83
2234 4929 7.266939 GACAGTTTGTCTAATTCACGTCTAG 57.733 40.000 2.08 0.00 43.73 2.43
2235 4930 6.978338 ACAGTTTGTCTAATTCACGTCTAGA 58.022 36.000 0.00 0.00 0.00 2.43
2236 4931 7.603651 ACAGTTTGTCTAATTCACGTCTAGAT 58.396 34.615 0.00 0.00 0.00 1.98
2237 4932 7.542477 ACAGTTTGTCTAATTCACGTCTAGATG 59.458 37.037 10.54 10.54 0.00 2.90
2238 4933 7.542477 CAGTTTGTCTAATTCACGTCTAGATGT 59.458 37.037 11.99 11.99 0.00 3.06
2239 4934 8.088981 AGTTTGTCTAATTCACGTCTAGATGTT 58.911 33.333 15.12 3.67 0.00 2.71
2240 4935 8.709646 GTTTGTCTAATTCACGTCTAGATGTTT 58.290 33.333 15.12 9.87 0.00 2.83
2241 4936 8.827177 TTGTCTAATTCACGTCTAGATGTTTT 57.173 30.769 15.12 11.28 0.00 2.43
2242 4937 8.827177 TGTCTAATTCACGTCTAGATGTTTTT 57.173 30.769 15.12 10.96 0.00 1.94
2264 4959 7.647907 TTTTAAAGATGTCACGTCTAACCTC 57.352 36.000 0.00 0.00 0.00 3.85
2265 4960 3.870633 AAGATGTCACGTCTAACCTCC 57.129 47.619 0.00 0.00 0.00 4.30
2266 4961 2.100989 AGATGTCACGTCTAACCTCCC 58.899 52.381 0.00 0.00 0.00 4.30
2267 4962 1.822990 GATGTCACGTCTAACCTCCCA 59.177 52.381 0.00 0.00 0.00 4.37
2268 4963 0.963962 TGTCACGTCTAACCTCCCAC 59.036 55.000 0.00 0.00 0.00 4.61
2269 4964 0.963962 GTCACGTCTAACCTCCCACA 59.036 55.000 0.00 0.00 0.00 4.17
2270 4965 1.342174 GTCACGTCTAACCTCCCACAA 59.658 52.381 0.00 0.00 0.00 3.33
2271 4966 2.040939 TCACGTCTAACCTCCCACAAA 58.959 47.619 0.00 0.00 0.00 2.83
2272 4967 2.635915 TCACGTCTAACCTCCCACAAAT 59.364 45.455 0.00 0.00 0.00 2.32
2273 4968 2.742053 CACGTCTAACCTCCCACAAATG 59.258 50.000 0.00 0.00 0.00 2.32
2274 4969 2.370849 ACGTCTAACCTCCCACAAATGT 59.629 45.455 0.00 0.00 0.00 2.71
2275 4970 3.579586 ACGTCTAACCTCCCACAAATGTA 59.420 43.478 0.00 0.00 0.00 2.29
2276 4971 4.224370 ACGTCTAACCTCCCACAAATGTAT 59.776 41.667 0.00 0.00 0.00 2.29
2277 4972 5.422970 ACGTCTAACCTCCCACAAATGTATA 59.577 40.000 0.00 0.00 0.00 1.47
2278 4973 6.099269 ACGTCTAACCTCCCACAAATGTATAT 59.901 38.462 0.00 0.00 0.00 0.86
2279 4974 6.645415 CGTCTAACCTCCCACAAATGTATATC 59.355 42.308 0.00 0.00 0.00 1.63
2280 4975 6.935208 GTCTAACCTCCCACAAATGTATATCC 59.065 42.308 0.00 0.00 0.00 2.59
2281 4976 5.725551 AACCTCCCACAAATGTATATCCA 57.274 39.130 0.00 0.00 0.00 3.41
2282 4977 5.725551 ACCTCCCACAAATGTATATCCAA 57.274 39.130 0.00 0.00 0.00 3.53
2283 4978 6.279813 ACCTCCCACAAATGTATATCCAAT 57.720 37.500 0.00 0.00 0.00 3.16
2284 4979 7.401060 ACCTCCCACAAATGTATATCCAATA 57.599 36.000 0.00 0.00 0.00 1.90
2285 4980 8.000171 ACCTCCCACAAATGTATATCCAATAT 58.000 34.615 0.00 0.00 0.00 1.28
2286 4981 9.122954 ACCTCCCACAAATGTATATCCAATATA 57.877 33.333 0.00 0.00 0.00 0.86
2343 5038 7.556733 AAAAATAGACCGTACAACAAACAGA 57.443 32.000 0.00 0.00 0.00 3.41
2344 5039 6.780706 AAATAGACCGTACAACAAACAGAG 57.219 37.500 0.00 0.00 0.00 3.35
2345 5040 3.814005 AGACCGTACAACAAACAGAGT 57.186 42.857 0.00 0.00 0.00 3.24
2346 5041 3.454375 AGACCGTACAACAAACAGAGTG 58.546 45.455 0.00 0.00 0.00 3.51
2347 5042 2.542595 GACCGTACAACAAACAGAGTGG 59.457 50.000 0.00 0.00 0.00 4.00
2348 5043 2.168936 ACCGTACAACAAACAGAGTGGA 59.831 45.455 0.00 0.00 0.00 4.02
2349 5044 2.542595 CCGTACAACAAACAGAGTGGAC 59.457 50.000 0.00 0.00 0.00 4.02
2350 5045 3.191669 CGTACAACAAACAGAGTGGACA 58.808 45.455 0.00 0.00 0.00 4.02
2351 5046 3.807622 CGTACAACAAACAGAGTGGACAT 59.192 43.478 0.00 0.00 0.00 3.06
2352 5047 4.084537 CGTACAACAAACAGAGTGGACATC 60.085 45.833 0.00 0.00 0.00 3.06
2353 5048 3.884895 ACAACAAACAGAGTGGACATCA 58.115 40.909 0.00 0.00 0.00 3.07
2354 5049 3.879295 ACAACAAACAGAGTGGACATCAG 59.121 43.478 0.00 0.00 0.00 2.90
2355 5050 2.498167 ACAAACAGAGTGGACATCAGC 58.502 47.619 0.00 0.00 0.00 4.26
2356 5051 2.105477 ACAAACAGAGTGGACATCAGCT 59.895 45.455 0.00 0.00 0.00 4.24
2357 5052 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
2358 5053 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
2359 5054 4.623932 AACAGAGTGGACATCAGCTTAA 57.376 40.909 0.00 0.00 0.00 1.85
2360 5055 4.623932 ACAGAGTGGACATCAGCTTAAA 57.376 40.909 0.00 0.00 0.00 1.52
2361 5056 5.171339 ACAGAGTGGACATCAGCTTAAAT 57.829 39.130 0.00 0.00 0.00 1.40
2362 5057 4.940046 ACAGAGTGGACATCAGCTTAAATG 59.060 41.667 0.00 0.00 0.00 2.32
2363 5058 4.940046 CAGAGTGGACATCAGCTTAAATGT 59.060 41.667 5.97 5.97 38.78 2.71
2364 5059 4.940046 AGAGTGGACATCAGCTTAAATGTG 59.060 41.667 10.12 0.00 36.28 3.21
2365 5060 4.910195 AGTGGACATCAGCTTAAATGTGA 58.090 39.130 10.12 0.00 36.28 3.58
2366 5061 4.697352 AGTGGACATCAGCTTAAATGTGAC 59.303 41.667 10.12 7.28 36.28 3.67
2367 5062 4.455533 GTGGACATCAGCTTAAATGTGACA 59.544 41.667 10.12 7.03 36.28 3.58
2368 5063 5.124457 GTGGACATCAGCTTAAATGTGACAT 59.876 40.000 10.12 0.00 36.28 3.06
2369 5064 6.316140 GTGGACATCAGCTTAAATGTGACATA 59.684 38.462 10.12 0.00 36.28 2.29
2370 5065 6.883756 TGGACATCAGCTTAAATGTGACATAA 59.116 34.615 10.12 0.00 36.28 1.90
2371 5066 7.148255 TGGACATCAGCTTAAATGTGACATAAC 60.148 37.037 10.12 0.00 36.28 1.89
2372 5067 7.066284 GGACATCAGCTTAAATGTGACATAACT 59.934 37.037 10.12 0.00 36.28 2.24
2373 5068 9.098355 GACATCAGCTTAAATGTGACATAACTA 57.902 33.333 10.12 0.00 36.28 2.24
2374 5069 9.618890 ACATCAGCTTAAATGTGACATAACTAT 57.381 29.630 0.00 0.00 34.88 2.12
2375 5070 9.874215 CATCAGCTTAAATGTGACATAACTATG 57.126 33.333 0.00 0.00 39.55 2.23
2376 5071 9.836864 ATCAGCTTAAATGTGACATAACTATGA 57.163 29.630 0.00 0.41 37.15 2.15
2377 5072 9.836864 TCAGCTTAAATGTGACATAACTATGAT 57.163 29.630 0.00 0.00 37.15 2.45
2387 5082 9.136323 TGTGACATAACTATGATCTAGATGTGT 57.864 33.333 10.74 0.00 37.15 3.72
2388 5083 9.619316 GTGACATAACTATGATCTAGATGTGTC 57.381 37.037 10.74 19.56 37.15 3.67
2389 5084 8.797438 TGACATAACTATGATCTAGATGTGTCC 58.203 37.037 10.74 0.00 37.15 4.02
2390 5085 8.948401 ACATAACTATGATCTAGATGTGTCCT 57.052 34.615 10.74 0.00 37.15 3.85
2394 5089 8.630054 AACTATGATCTAGATGTGTCCTAGAC 57.370 38.462 10.74 0.00 43.57 2.59
2395 5090 7.750655 ACTATGATCTAGATGTGTCCTAGACA 58.249 38.462 10.74 0.00 43.57 3.41
2396 5091 8.390143 ACTATGATCTAGATGTGTCCTAGACAT 58.610 37.037 10.74 5.79 44.63 3.06
2397 5092 7.701539 ATGATCTAGATGTGTCCTAGACATC 57.298 40.000 10.74 12.84 46.85 3.06
2404 5099 4.955811 TGTGTCCTAGACATCAGTTTGT 57.044 40.909 0.05 0.00 44.63 2.83
2405 5100 4.883083 TGTGTCCTAGACATCAGTTTGTC 58.117 43.478 0.05 0.00 44.63 3.18
2417 5112 8.261492 GACATCAGTTTGTCTAATTCACATCT 57.739 34.615 0.00 0.00 42.22 2.90
2418 5113 9.371136 GACATCAGTTTGTCTAATTCACATCTA 57.629 33.333 0.00 0.00 42.22 1.98
2419 5114 9.376075 ACATCAGTTTGTCTAATTCACATCTAG 57.624 33.333 0.00 0.00 0.00 2.43
2420 5115 9.591792 CATCAGTTTGTCTAATTCACATCTAGA 57.408 33.333 0.00 0.00 0.00 2.43
2422 5117 9.591792 TCAGTTTGTCTAATTCACATCTAGATG 57.408 33.333 27.63 27.63 44.15 2.90
2450 5145 7.849804 TTTAAAGATGTCACATCTAAGCTCC 57.150 36.000 20.94 0.00 0.00 4.70
2451 5146 4.414337 AAGATGTCACATCTAAGCTCCC 57.586 45.455 20.94 0.00 0.00 4.30
2452 5147 3.378512 AGATGTCACATCTAAGCTCCCA 58.621 45.455 19.29 0.00 0.00 4.37
2453 5148 3.133721 AGATGTCACATCTAAGCTCCCAC 59.866 47.826 19.29 0.00 0.00 4.61
2454 5149 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
2455 5150 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
2456 5151 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
2457 5152 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
2458 5153 4.095483 GTCACATCTAAGCTCCCACAAATG 59.905 45.833 0.00 0.00 0.00 2.32
2459 5154 4.012374 CACATCTAAGCTCCCACAAATGT 58.988 43.478 0.00 0.00 0.00 2.71
2460 5155 5.045942 TCACATCTAAGCTCCCACAAATGTA 60.046 40.000 0.00 0.00 0.00 2.29
2461 5156 5.824624 CACATCTAAGCTCCCACAAATGTAT 59.175 40.000 0.00 0.00 0.00 2.29
2462 5157 6.992123 CACATCTAAGCTCCCACAAATGTATA 59.008 38.462 0.00 0.00 0.00 1.47
2463 5158 7.663081 CACATCTAAGCTCCCACAAATGTATAT 59.337 37.037 0.00 0.00 0.00 0.86
2464 5159 7.880195 ACATCTAAGCTCCCACAAATGTATATC 59.120 37.037 0.00 0.00 0.00 1.63
2465 5160 6.769512 TCTAAGCTCCCACAAATGTATATCC 58.230 40.000 0.00 0.00 0.00 2.59
2466 5161 5.387113 AAGCTCCCACAAATGTATATCCA 57.613 39.130 0.00 0.00 0.00 3.41
2467 5162 5.387113 AGCTCCCACAAATGTATATCCAA 57.613 39.130 0.00 0.00 0.00 3.53
2468 5163 5.957132 AGCTCCCACAAATGTATATCCAAT 58.043 37.500 0.00 0.00 0.00 3.16
2469 5164 7.090319 AGCTCCCACAAATGTATATCCAATA 57.910 36.000 0.00 0.00 0.00 1.90
2470 5165 7.702785 AGCTCCCACAAATGTATATCCAATAT 58.297 34.615 0.00 0.00 0.00 1.28
2471 5166 8.835734 AGCTCCCACAAATGTATATCCAATATA 58.164 33.333 0.00 0.00 0.00 0.86
2472 5167 9.632638 GCTCCCACAAATGTATATCCAATATAT 57.367 33.333 0.00 0.00 30.98 0.86
2528 5223 5.934935 AAAATAGACCGTACCACAAACAG 57.065 39.130 0.00 0.00 0.00 3.16
2529 5224 4.877378 AATAGACCGTACCACAAACAGA 57.123 40.909 0.00 0.00 0.00 3.41
2530 5225 2.814280 AGACCGTACCACAAACAGAG 57.186 50.000 0.00 0.00 0.00 3.35
2531 5226 2.037144 AGACCGTACCACAAACAGAGT 58.963 47.619 0.00 0.00 0.00 3.24
2532 5227 2.132762 GACCGTACCACAAACAGAGTG 58.867 52.381 0.00 0.00 36.76 3.51
2541 5236 2.225019 CACAAACAGAGTGGACATCAGC 59.775 50.000 0.00 0.00 33.43 4.26
2542 5237 2.105477 ACAAACAGAGTGGACATCAGCT 59.895 45.455 0.00 0.00 0.00 4.24
2543 5238 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
2544 5239 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
2545 5240 3.883830 ACAGAGTGGACATCAGCTTAG 57.116 47.619 0.00 0.00 0.00 2.18
2546 5241 3.435275 ACAGAGTGGACATCAGCTTAGA 58.565 45.455 0.00 0.00 0.00 2.10
2547 5242 4.029520 ACAGAGTGGACATCAGCTTAGAT 58.970 43.478 0.00 0.00 0.00 1.98
2560 5255 8.518151 CATCAGCTTAGATGTGACATAACTAG 57.482 38.462 0.00 0.00 40.35 2.57
2561 5256 7.881775 TCAGCTTAGATGTGACATAACTAGA 57.118 36.000 0.00 0.00 0.00 2.43
2562 5257 8.470657 TCAGCTTAGATGTGACATAACTAGAT 57.529 34.615 0.00 0.00 0.00 1.98
2563 5258 8.355913 TCAGCTTAGATGTGACATAACTAGATG 58.644 37.037 0.00 3.51 0.00 2.90
2564 5259 8.140628 CAGCTTAGATGTGACATAACTAGATGT 58.859 37.037 0.00 0.00 42.82 3.06
2565 5260 8.140628 AGCTTAGATGTGACATAACTAGATGTG 58.859 37.037 0.00 0.00 40.18 3.21
2566 5261 7.923344 GCTTAGATGTGACATAACTAGATGTGT 59.077 37.037 0.00 1.95 40.18 3.72
2567 5262 9.809096 CTTAGATGTGACATAACTAGATGTGTT 57.191 33.333 0.00 0.00 40.18 3.32
2568 5263 9.803315 TTAGATGTGACATAACTAGATGTGTTC 57.197 33.333 0.00 0.00 40.18 3.18
2569 5264 8.072321 AGATGTGACATAACTAGATGTGTTCT 57.928 34.615 0.00 0.90 40.18 3.01
2570 5265 9.190317 AGATGTGACATAACTAGATGTGTTCTA 57.810 33.333 0.00 0.00 40.18 2.10
2582 5277 6.412362 AGATGTGTTCTAGACAGACACTTT 57.588 37.500 21.14 12.24 39.39 2.66
2583 5278 6.219473 AGATGTGTTCTAGACAGACACTTTG 58.781 40.000 21.14 0.00 39.39 2.77
2584 5279 5.339008 TGTGTTCTAGACAGACACTTTGT 57.661 39.130 21.14 0.00 39.39 2.83
2585 5280 5.109210 TGTGTTCTAGACAGACACTTTGTG 58.891 41.667 21.14 0.00 39.39 3.33
2604 5299 1.411246 TGTTAACTAGATGCCGGCGAT 59.589 47.619 23.90 16.46 0.00 4.58
2641 5338 6.913170 AGTTTCATGCATTAATGAAGTTCGT 58.087 32.000 19.73 0.00 44.96 3.85
2642 5339 7.370383 AGTTTCATGCATTAATGAAGTTCGTT 58.630 30.769 19.73 14.55 44.96 3.85
2643 5340 7.538678 AGTTTCATGCATTAATGAAGTTCGTTC 59.461 33.333 19.73 0.93 44.96 3.95
2767 5467 9.500785 TTTGGATATATGCATGAGATACGAAAA 57.499 29.630 10.16 0.00 0.00 2.29
2784 5484 8.718047 ATACGAAAATTTTCTGTTACCGAAAC 57.282 30.769 24.53 0.00 38.67 2.78
2788 5488 7.219344 CGAAAATTTTCTGTTACCGAAACTGTT 59.781 33.333 24.53 0.00 38.99 3.16
2792 5492 6.981762 TTTCTGTTACCGAAACTGTTAACA 57.018 33.333 8.28 8.28 38.99 2.41
2800 5500 3.182972 CCGAAACTGTTAACACTACCACG 59.817 47.826 3.59 6.25 0.00 4.94
2807 6071 3.556775 TGTTAACACTACCACGCAAGAAC 59.443 43.478 3.59 0.00 43.62 3.01
2921 6195 8.376203 GCTGTTCGTATTATAATATCACTGCTG 58.624 37.037 21.21 11.94 0.00 4.41
2924 6198 8.861101 GTTCGTATTATAATATCACTGCTGGAC 58.139 37.037 8.40 0.00 0.00 4.02
3002 6276 5.009010 GGTGTTTTGGATATCAGCCACATAG 59.991 44.000 4.83 0.00 34.56 2.23
3033 6307 3.541632 GTTAACATGGACCGTGGATCAT 58.458 45.455 18.07 1.76 0.00 2.45
3133 6407 1.385743 GTGTTATGTCTGTGTCGACGC 59.614 52.381 22.00 22.00 36.71 5.19
3145 6419 2.279120 CGACGCTGAGATGGAGGC 60.279 66.667 0.00 0.00 0.00 4.70
3166 6440 2.231235 CGCCAGGGAAGCTAACAAAAAT 59.769 45.455 0.00 0.00 0.00 1.82
3265 6541 7.402071 TGGTAGATGGGTTTAAGATAGACTGTT 59.598 37.037 0.00 0.00 0.00 3.16
3298 6700 7.312657 AGCAATGCCATTCTTATATACGATG 57.687 36.000 0.00 0.00 0.00 3.84
3314 6717 4.712122 ACGATGTTTGTCCAAGTTTTGT 57.288 36.364 0.00 0.00 0.00 2.83
3347 6750 5.479724 TGCATGATTAACTTTTGTGATCCCA 59.520 36.000 0.00 0.00 0.00 4.37
3360 6763 0.183492 GATCCCAATGCAGGTGCCTA 59.817 55.000 0.00 0.00 41.18 3.93
3375 6778 1.362406 GCCTAGACAAAGCCGCAGTC 61.362 60.000 0.00 0.00 0.00 3.51
3381 6784 0.537143 ACAAAGCCGCAGTCATGGAA 60.537 50.000 0.00 0.00 0.00 3.53
3383 6786 1.244019 AAAGCCGCAGTCATGGAACC 61.244 55.000 0.00 0.00 0.00 3.62
3466 6869 1.280457 GGAGGAGGTGAAGATGGTGT 58.720 55.000 0.00 0.00 0.00 4.16
3475 6878 3.632145 GGTGAAGATGGTGTTGAACTTGT 59.368 43.478 0.00 0.00 0.00 3.16
3639 7042 1.680735 CTCTCCATCCTCCTCTTCACG 59.319 57.143 0.00 0.00 0.00 4.35
3760 7163 4.386951 CCGTGGCCATGGTCGTGA 62.387 66.667 32.79 0.00 32.81 4.35
3761 7164 2.815211 CGTGGCCATGGTCGTGAG 60.815 66.667 17.90 0.00 0.00 3.51
3958 7361 1.025113 GGGGCTCTTTCTGGTTACGC 61.025 60.000 0.00 0.00 0.00 4.42
4122 7525 1.333308 CTTGTGTTCGTGGTGATTGCA 59.667 47.619 0.00 0.00 0.00 4.08
4190 7593 0.906775 GGGGAGGACAACGATACCAA 59.093 55.000 0.00 0.00 0.00 3.67
4223 7626 0.249155 GACGACGTCCTTGTGGTCAA 60.249 55.000 17.25 0.00 44.17 3.18
4259 7662 2.505819 GGATGGATGTGTAGGGAGTGTT 59.494 50.000 0.00 0.00 0.00 3.32
4303 7706 9.836864 ATATGAATAGCAGATTGAGTGTAAACA 57.163 29.630 0.00 0.00 0.00 2.83
4342 7750 1.337118 GTGGAACCAGCCCATCAAAA 58.663 50.000 0.00 0.00 35.91 2.44
4350 7758 3.647590 ACCAGCCCATCAAAATTCAAGTT 59.352 39.130 0.00 0.00 0.00 2.66
4352 7760 5.306678 ACCAGCCCATCAAAATTCAAGTTTA 59.693 36.000 0.00 0.00 0.00 2.01
4353 7761 5.639082 CCAGCCCATCAAAATTCAAGTTTAC 59.361 40.000 0.00 0.00 0.00 2.01
4392 7800 9.103861 GGGTGTTCACATTTTTCTGAATTTTAA 57.896 29.630 5.32 0.00 0.00 1.52
4407 7815 9.567848 TCTGAATTTTAATTTAGACATTTCGGC 57.432 29.630 5.80 0.00 36.48 5.54
4418 7826 1.606668 ACATTTCGGCGATGTGTGTTT 59.393 42.857 21.65 2.90 36.43 2.83
4421 7829 2.157834 TTCGGCGATGTGTGTTTAGT 57.842 45.000 11.76 0.00 0.00 2.24
4436 7844 4.636206 GTGTTTAGTGGGAGATGATGTTCC 59.364 45.833 0.00 0.00 0.00 3.62
4446 7854 1.261619 GATGATGTTCCCGTCGATTGC 59.738 52.381 0.00 0.00 0.00 3.56
4457 7865 0.874390 GTCGATTGCAAAGTGCCTCA 59.126 50.000 1.71 0.00 44.23 3.86
4469 7877 1.212935 AGTGCCTCAGGTGACTTTGTT 59.787 47.619 0.00 0.00 40.21 2.83
4544 7952 2.210116 GCGTGTGTATGTTCATAGGGG 58.790 52.381 0.00 0.00 0.00 4.79
4573 8006 1.666023 CGTGTGTATGTGAGCGTCTGT 60.666 52.381 0.00 0.00 0.00 3.41
4582 8015 0.601558 TGAGCGTCTGTCCTTGTACC 59.398 55.000 0.00 0.00 0.00 3.34
4591 8024 3.640029 TCTGTCCTTGTACCGTCTTTCTT 59.360 43.478 0.00 0.00 0.00 2.52
4800 8248 4.197107 GAACGAAAACAGTTCACAGAGG 57.803 45.455 4.45 0.00 45.21 3.69
4801 8249 2.561569 ACGAAAACAGTTCACAGAGGG 58.438 47.619 0.00 0.00 0.00 4.30
4823 8271 3.858503 GCAAATGAAACACAGGAAGAGGC 60.859 47.826 0.00 0.00 0.00 4.70
4865 8313 3.118811 TCAACAAGCCCAAAACCAGAAAG 60.119 43.478 0.00 0.00 0.00 2.62
4885 8333 2.910319 AGTGACACATAGGGGTTAGCAA 59.090 45.455 8.59 0.00 0.00 3.91
4959 8411 1.763770 CCAAGGTCCTGAAGCCAGT 59.236 57.895 0.00 0.00 38.74 4.00
4997 8449 3.181475 GGACATGTGATCCATCGTACAGT 60.181 47.826 1.15 0.00 36.15 3.55
5156 8608 4.191544 CACATAATGTGGTGTGTCCCTAG 58.808 47.826 0.00 0.00 44.27 3.02
5157 8609 4.081142 CACATAATGTGGTGTGTCCCTAGA 60.081 45.833 0.00 0.00 44.27 2.43
5162 8614 1.306226 GGTGTGTCCCTAGAGGCCT 60.306 63.158 3.86 3.86 34.51 5.19
5176 8628 4.360643 GCCTGGCCATCAATTCCA 57.639 55.556 5.51 0.00 0.00 3.53
5177 8629 2.594342 GCCTGGCCATCAATTCCAA 58.406 52.632 5.51 0.00 0.00 3.53
5246 8698 3.445096 AGCAACTCCACAAGAATTATGCC 59.555 43.478 0.00 0.00 31.91 4.40
5247 8699 3.731867 GCAACTCCACAAGAATTATGCCG 60.732 47.826 0.00 0.00 0.00 5.69
5248 8700 3.627395 ACTCCACAAGAATTATGCCGA 57.373 42.857 0.00 0.00 0.00 5.54
5249 8701 3.950397 ACTCCACAAGAATTATGCCGAA 58.050 40.909 0.00 0.00 0.00 4.30
5250 8702 4.331968 ACTCCACAAGAATTATGCCGAAA 58.668 39.130 0.00 0.00 0.00 3.46
5251 8703 4.156008 ACTCCACAAGAATTATGCCGAAAC 59.844 41.667 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.120538 GGGCATTAGAGTTCTCATTTTTATGTA 57.879 33.333 2.64 0.00 0.00 2.29
32 33 7.836183 AGGGCATTAGAGTTCTCATTTTTATGT 59.164 33.333 2.64 0.00 0.00 2.29
66 67 3.081061 TCACACATGGGATAACTTGCAC 58.919 45.455 0.00 0.00 0.00 4.57
76 77 3.560105 TCACAACATTTCACACATGGGA 58.440 40.909 0.00 0.00 0.00 4.37
80 81 2.030893 CGGCTCACAACATTTCACACAT 60.031 45.455 0.00 0.00 0.00 3.21
86 87 0.874390 TGAGCGGCTCACAACATTTC 59.126 50.000 27.76 0.00 35.39 2.17
88 89 1.089920 GATGAGCGGCTCACAACATT 58.910 50.000 32.96 17.45 43.63 2.71
107 108 0.170116 AACGCATGTGTTTATGGCCG 59.830 50.000 18.77 0.00 0.00 6.13
111 112 6.358558 ACGTTTTAGAAACGCATGTGTTTATG 59.641 34.615 31.77 23.87 46.58 1.90
112 113 6.432107 ACGTTTTAGAAACGCATGTGTTTAT 58.568 32.000 31.45 30.00 46.58 1.40
134 135 1.127951 GGCTTCGAATACACACCAACG 59.872 52.381 0.00 0.00 0.00 4.10
135 136 2.095919 GTGGCTTCGAATACACACCAAC 60.096 50.000 20.81 6.15 34.16 3.77
142 143 6.016693 TCTGAAATTTTGTGGCTTCGAATACA 60.017 34.615 0.00 2.03 0.00 2.29
143 144 6.378582 TCTGAAATTTTGTGGCTTCGAATAC 58.621 36.000 0.00 0.00 0.00 1.89
194 195 3.941483 CACCCTTGATGGACAGTAACATC 59.059 47.826 9.72 9.72 42.86 3.06
205 206 4.644234 TGTATTGTATTGCACCCTTGATGG 59.356 41.667 0.00 0.00 0.00 3.51
214 215 3.352648 ACCTGGGTGTATTGTATTGCAC 58.647 45.455 0.00 0.00 0.00 4.57
220 221 5.484644 TGTAGCTAAACCTGGGTGTATTGTA 59.515 40.000 0.00 0.00 0.00 2.41
221 222 4.287585 TGTAGCTAAACCTGGGTGTATTGT 59.712 41.667 0.00 0.00 0.00 2.71
266 270 3.380637 TCCGTGCATAGTACTTTCTCCTC 59.619 47.826 0.00 0.00 0.00 3.71
269 273 4.352887 GACTCCGTGCATAGTACTTTCTC 58.647 47.826 0.00 0.00 0.00 2.87
284 289 2.493030 CATTACCCGCGACTCCGT 59.507 61.111 8.23 0.00 38.24 4.69
286 291 0.318784 CTAGCATTACCCGCGACTCC 60.319 60.000 8.23 0.00 0.00 3.85
287 292 0.666913 TCTAGCATTACCCGCGACTC 59.333 55.000 8.23 0.00 0.00 3.36
288 293 0.669077 CTCTAGCATTACCCGCGACT 59.331 55.000 8.23 0.00 0.00 4.18
290 295 1.107538 AGCTCTAGCATTACCCGCGA 61.108 55.000 8.23 0.00 45.16 5.87
291 296 0.941463 CAGCTCTAGCATTACCCGCG 60.941 60.000 0.00 0.00 45.16 6.46
292 297 0.105039 ACAGCTCTAGCATTACCCGC 59.895 55.000 4.54 0.00 45.16 6.13
295 313 1.762957 TCCCACAGCTCTAGCATTACC 59.237 52.381 4.54 0.00 45.16 2.85
310 328 5.627780 CGTTAAAACATAACAAAGCTCCCAC 59.372 40.000 0.00 0.00 0.00 4.61
315 333 9.968870 TTAATTCCGTTAAAACATAACAAAGCT 57.031 25.926 0.00 0.00 29.52 3.74
328 346 7.999450 ACTAACCCATGTTAATTCCGTTAAA 57.001 32.000 0.00 0.00 36.54 1.52
331 349 6.070078 TCCTACTAACCCATGTTAATTCCGTT 60.070 38.462 0.00 0.00 36.54 4.44
333 351 5.920903 TCCTACTAACCCATGTTAATTCCG 58.079 41.667 0.00 0.00 36.54 4.30
334 352 7.230712 CCAATCCTACTAACCCATGTTAATTCC 59.769 40.741 0.00 0.00 36.54 3.01
336 354 7.559897 CACCAATCCTACTAACCCATGTTAATT 59.440 37.037 0.00 0.00 36.54 1.40
339 357 5.727279 TCACCAATCCTACTAACCCATGTTA 59.273 40.000 0.00 0.00 35.87 2.41
340 358 4.538490 TCACCAATCCTACTAACCCATGTT 59.462 41.667 0.00 0.00 38.52 2.71
349 375 3.053077 CCCCCAATCACCAATCCTACTA 58.947 50.000 0.00 0.00 0.00 1.82
370 396 1.702491 CTACTTTTAGCCGGTGCGCC 61.702 60.000 6.11 6.11 44.33 6.53
371 397 1.702491 CCTACTTTTAGCCGGTGCGC 61.702 60.000 1.90 0.00 44.33 6.09
397 2570 5.071115 ACTTGAGTTTTACTCTCTGGCTCTT 59.929 40.000 8.18 0.00 45.27 2.85
561 2882 4.543590 ATCATCCTCCGTGTGGATTATC 57.456 45.455 5.17 0.00 45.33 1.75
577 2898 7.329582 CGCAATTTTTCCATTTCGTAATCATC 58.670 34.615 0.00 0.00 0.00 2.92
579 2900 5.574830 CCGCAATTTTTCCATTTCGTAATCA 59.425 36.000 0.00 0.00 0.00 2.57
581 2902 4.328712 GCCGCAATTTTTCCATTTCGTAAT 59.671 37.500 0.00 0.00 0.00 1.89
587 2908 2.857186 AGGCCGCAATTTTTCCATTT 57.143 40.000 0.00 0.00 0.00 2.32
588 2909 2.698803 GAAGGCCGCAATTTTTCCATT 58.301 42.857 0.00 0.00 0.00 3.16
589 2910 1.404047 CGAAGGCCGCAATTTTTCCAT 60.404 47.619 0.00 0.00 0.00 3.41
590 2911 0.038709 CGAAGGCCGCAATTTTTCCA 60.039 50.000 0.00 0.00 0.00 3.53
591 2912 0.735978 CCGAAGGCCGCAATTTTTCC 60.736 55.000 0.00 0.00 46.14 3.13
592 2913 2.736890 CCGAAGGCCGCAATTTTTC 58.263 52.632 0.00 0.00 46.14 2.29
593 2914 4.985845 CCGAAGGCCGCAATTTTT 57.014 50.000 0.00 0.00 46.14 1.94
670 2991 4.639171 GCCGGTTGCGTGGTTTGG 62.639 66.667 1.90 0.00 0.00 3.28
692 3021 3.116300 CGAACGGACAAGTAGATGATGG 58.884 50.000 0.00 0.00 0.00 3.51
755 3085 9.015146 GGGATTGGAGACCCCTAAAATATATAT 57.985 37.037 0.00 0.00 40.19 0.86
756 3086 8.401955 GGGATTGGAGACCCCTAAAATATATA 57.598 38.462 0.00 0.00 40.19 0.86
757 3087 7.285340 GGGATTGGAGACCCCTAAAATATAT 57.715 40.000 0.00 0.00 40.19 0.86
758 3088 6.713731 GGGATTGGAGACCCCTAAAATATA 57.286 41.667 0.00 0.00 40.19 0.86
759 3089 5.600669 GGGATTGGAGACCCCTAAAATAT 57.399 43.478 0.00 0.00 40.19 1.28
761 3091 3.973472 GGGATTGGAGACCCCTAAAAT 57.027 47.619 0.00 0.00 40.19 1.82
767 3097 0.621862 AGTCAGGGATTGGAGACCCC 60.622 60.000 0.00 0.00 46.64 4.95
768 3098 0.543749 CAGTCAGGGATTGGAGACCC 59.456 60.000 0.00 0.00 45.88 4.46
769 3099 0.107459 GCAGTCAGGGATTGGAGACC 60.107 60.000 0.00 0.00 0.00 3.85
770 3100 0.908198 AGCAGTCAGGGATTGGAGAC 59.092 55.000 0.00 0.00 0.00 3.36
771 3101 1.198713 GAGCAGTCAGGGATTGGAGA 58.801 55.000 0.00 0.00 0.00 3.71
772 3102 0.907486 TGAGCAGTCAGGGATTGGAG 59.093 55.000 0.00 0.00 0.00 3.86
773 3103 0.615331 GTGAGCAGTCAGGGATTGGA 59.385 55.000 0.00 0.00 31.53 3.53
774 3104 0.617413 AGTGAGCAGTCAGGGATTGG 59.383 55.000 0.00 0.00 31.53 3.16
775 3105 1.735386 CAGTGAGCAGTCAGGGATTG 58.265 55.000 0.00 0.00 31.53 2.67
776 3106 0.035630 GCAGTGAGCAGTCAGGGATT 60.036 55.000 0.00 0.00 44.79 3.01
777 3107 1.601171 GCAGTGAGCAGTCAGGGAT 59.399 57.895 0.00 0.00 44.79 3.85
778 3108 3.063526 GCAGTGAGCAGTCAGGGA 58.936 61.111 0.00 0.00 44.79 4.20
836 3166 6.209986 TCTGGATTAACTTCCGTTTCTGTCTA 59.790 38.462 0.00 0.00 38.74 2.59
837 3167 5.011738 TCTGGATTAACTTCCGTTTCTGTCT 59.988 40.000 0.00 0.00 38.74 3.41
838 3168 5.235516 TCTGGATTAACTTCCGTTTCTGTC 58.764 41.667 0.00 0.00 38.74 3.51
839 3169 5.223449 TCTGGATTAACTTCCGTTTCTGT 57.777 39.130 0.00 0.00 38.74 3.41
881 3212 0.533978 TCGTGGTTGTGGTGGATGTG 60.534 55.000 0.00 0.00 0.00 3.21
1041 3387 6.345250 GCAATCGCATGCAGTTAATTAATCAC 60.345 38.462 19.57 0.00 45.70 3.06
1167 3513 0.768622 TCTTGGATTTGTCCACCGGT 59.231 50.000 0.00 0.00 39.90 5.28
1371 3722 0.467384 CCAGGTTCATCGAGATGCCT 59.533 55.000 8.14 7.21 38.65 4.75
1467 3818 1.726533 CGACGAGGGCTAGGAGGTTC 61.727 65.000 0.00 0.00 0.00 3.62
2135 4531 2.960957 ATCCATTGAGCTCGTCGGCG 62.961 60.000 1.15 1.15 37.29 6.46
2165 4561 1.004745 CTGTCAGTATGGGCCACCTTT 59.995 52.381 9.28 0.00 37.76 3.11
2196 4592 4.101430 ACAAACTGTCAAAGGCATCCAAAT 59.899 37.500 0.00 0.00 0.00 2.32
2211 4906 6.978338 TCTAGACGTGAATTAGACAAACTGT 58.022 36.000 0.00 0.00 0.00 3.55
2214 4909 7.813852 ACATCTAGACGTGAATTAGACAAAC 57.186 36.000 0.00 0.00 0.00 2.93
2215 4910 8.827177 AAACATCTAGACGTGAATTAGACAAA 57.173 30.769 0.00 0.00 0.00 2.83
2216 4911 8.827177 AAAACATCTAGACGTGAATTAGACAA 57.173 30.769 0.00 0.00 0.00 3.18
2217 4912 8.827177 AAAAACATCTAGACGTGAATTAGACA 57.173 30.769 0.00 0.00 0.00 3.41
2239 4934 7.172019 GGAGGTTAGACGTGACATCTTTAAAAA 59.828 37.037 0.00 0.00 0.00 1.94
2240 4935 6.647895 GGAGGTTAGACGTGACATCTTTAAAA 59.352 38.462 0.00 0.00 0.00 1.52
2241 4936 6.161381 GGAGGTTAGACGTGACATCTTTAAA 58.839 40.000 0.00 0.00 0.00 1.52
2242 4937 5.337009 GGGAGGTTAGACGTGACATCTTTAA 60.337 44.000 0.00 0.00 0.00 1.52
2243 4938 4.159135 GGGAGGTTAGACGTGACATCTTTA 59.841 45.833 0.00 0.00 0.00 1.85
2244 4939 3.056035 GGGAGGTTAGACGTGACATCTTT 60.056 47.826 0.00 0.00 0.00 2.52
2245 4940 2.496470 GGGAGGTTAGACGTGACATCTT 59.504 50.000 0.00 0.00 0.00 2.40
2246 4941 2.100989 GGGAGGTTAGACGTGACATCT 58.899 52.381 0.00 0.00 0.00 2.90
2247 4942 1.822990 TGGGAGGTTAGACGTGACATC 59.177 52.381 0.00 0.00 0.00 3.06
2248 4943 1.549170 GTGGGAGGTTAGACGTGACAT 59.451 52.381 0.00 0.00 0.00 3.06
2249 4944 0.963962 GTGGGAGGTTAGACGTGACA 59.036 55.000 0.00 0.00 0.00 3.58
2250 4945 0.963962 TGTGGGAGGTTAGACGTGAC 59.036 55.000 0.00 0.00 0.00 3.67
2251 4946 1.707106 TTGTGGGAGGTTAGACGTGA 58.293 50.000 0.00 0.00 0.00 4.35
2252 4947 2.536761 TTTGTGGGAGGTTAGACGTG 57.463 50.000 0.00 0.00 0.00 4.49
2253 4948 2.370849 ACATTTGTGGGAGGTTAGACGT 59.629 45.455 0.00 0.00 0.00 4.34
2254 4949 3.053831 ACATTTGTGGGAGGTTAGACG 57.946 47.619 0.00 0.00 0.00 4.18
2255 4950 6.935208 GGATATACATTTGTGGGAGGTTAGAC 59.065 42.308 0.00 0.00 0.00 2.59
2256 4951 6.617784 TGGATATACATTTGTGGGAGGTTAGA 59.382 38.462 0.00 0.00 0.00 2.10
2257 4952 6.837312 TGGATATACATTTGTGGGAGGTTAG 58.163 40.000 0.00 0.00 0.00 2.34
2258 4953 6.833346 TGGATATACATTTGTGGGAGGTTA 57.167 37.500 0.00 0.00 0.00 2.85
2259 4954 5.725551 TGGATATACATTTGTGGGAGGTT 57.274 39.130 0.00 0.00 0.00 3.50
2260 4955 5.725551 TTGGATATACATTTGTGGGAGGT 57.274 39.130 0.00 0.00 0.00 3.85
2319 5014 7.281549 ACTCTGTTTGTTGTACGGTCTATTTTT 59.718 33.333 0.00 0.00 0.00 1.94
2320 5015 6.764560 ACTCTGTTTGTTGTACGGTCTATTTT 59.235 34.615 0.00 0.00 0.00 1.82
2321 5016 6.202188 CACTCTGTTTGTTGTACGGTCTATTT 59.798 38.462 0.00 0.00 0.00 1.40
2322 5017 5.694910 CACTCTGTTTGTTGTACGGTCTATT 59.305 40.000 0.00 0.00 0.00 1.73
2323 5018 5.227908 CACTCTGTTTGTTGTACGGTCTAT 58.772 41.667 0.00 0.00 0.00 1.98
2324 5019 4.500205 CCACTCTGTTTGTTGTACGGTCTA 60.500 45.833 0.00 0.00 0.00 2.59
2325 5020 3.454375 CACTCTGTTTGTTGTACGGTCT 58.546 45.455 0.00 0.00 0.00 3.85
2326 5021 2.542595 CCACTCTGTTTGTTGTACGGTC 59.457 50.000 0.00 0.00 0.00 4.79
2327 5022 2.168936 TCCACTCTGTTTGTTGTACGGT 59.831 45.455 0.00 0.00 0.00 4.83
2328 5023 2.542595 GTCCACTCTGTTTGTTGTACGG 59.457 50.000 0.00 0.00 0.00 4.02
2329 5024 3.191669 TGTCCACTCTGTTTGTTGTACG 58.808 45.455 0.00 0.00 0.00 3.67
2330 5025 4.814234 TGATGTCCACTCTGTTTGTTGTAC 59.186 41.667 0.00 0.00 0.00 2.90
2331 5026 5.029807 TGATGTCCACTCTGTTTGTTGTA 57.970 39.130 0.00 0.00 0.00 2.41
2332 5027 3.879295 CTGATGTCCACTCTGTTTGTTGT 59.121 43.478 0.00 0.00 0.00 3.32
2333 5028 3.304257 GCTGATGTCCACTCTGTTTGTTG 60.304 47.826 0.00 0.00 0.00 3.33
2334 5029 2.880890 GCTGATGTCCACTCTGTTTGTT 59.119 45.455 0.00 0.00 0.00 2.83
2335 5030 2.105477 AGCTGATGTCCACTCTGTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
2336 5031 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
2337 5032 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
2338 5033 4.623932 TTAAGCTGATGTCCACTCTGTT 57.376 40.909 0.00 0.00 0.00 3.16
2339 5034 4.623932 TTTAAGCTGATGTCCACTCTGT 57.376 40.909 0.00 0.00 0.00 3.41
2340 5035 4.940046 ACATTTAAGCTGATGTCCACTCTG 59.060 41.667 5.15 0.00 31.07 3.35
2341 5036 4.940046 CACATTTAAGCTGATGTCCACTCT 59.060 41.667 7.45 0.00 34.42 3.24
2342 5037 4.937620 TCACATTTAAGCTGATGTCCACTC 59.062 41.667 7.45 0.00 34.42 3.51
2343 5038 4.697352 GTCACATTTAAGCTGATGTCCACT 59.303 41.667 7.45 0.00 34.42 4.00
2344 5039 4.455533 TGTCACATTTAAGCTGATGTCCAC 59.544 41.667 7.45 8.03 34.42 4.02
2345 5040 4.650734 TGTCACATTTAAGCTGATGTCCA 58.349 39.130 7.45 5.68 34.42 4.02
2346 5041 5.824904 ATGTCACATTTAAGCTGATGTCC 57.175 39.130 7.45 3.72 34.42 4.02
2347 5042 7.978982 AGTTATGTCACATTTAAGCTGATGTC 58.021 34.615 0.00 0.75 34.42 3.06
2348 5043 7.928307 AGTTATGTCACATTTAAGCTGATGT 57.072 32.000 0.00 5.15 36.97 3.06
2349 5044 9.874215 CATAGTTATGTCACATTTAAGCTGATG 57.126 33.333 0.00 0.00 0.00 3.07
2350 5045 9.836864 TCATAGTTATGTCACATTTAAGCTGAT 57.163 29.630 0.00 0.00 35.26 2.90
2351 5046 9.836864 ATCATAGTTATGTCACATTTAAGCTGA 57.163 29.630 0.00 0.00 35.26 4.26
2361 5056 9.136323 ACACATCTAGATCATAGTTATGTCACA 57.864 33.333 1.03 0.00 35.26 3.58
2362 5057 9.619316 GACACATCTAGATCATAGTTATGTCAC 57.381 37.037 1.03 0.00 35.26 3.67
2363 5058 8.797438 GGACACATCTAGATCATAGTTATGTCA 58.203 37.037 1.03 0.00 34.61 3.58
2364 5059 9.019656 AGGACACATCTAGATCATAGTTATGTC 57.980 37.037 1.03 6.77 35.26 3.06
2365 5060 8.948401 AGGACACATCTAGATCATAGTTATGT 57.052 34.615 1.03 0.00 35.26 2.29
2368 5063 9.727859 GTCTAGGACACATCTAGATCATAGTTA 57.272 37.037 1.03 0.00 43.25 2.24
2369 5064 8.221251 TGTCTAGGACACATCTAGATCATAGTT 58.779 37.037 1.03 0.00 43.25 2.24
2370 5065 7.750655 TGTCTAGGACACATCTAGATCATAGT 58.249 38.462 1.03 0.00 43.25 2.12
2371 5066 8.806429 ATGTCTAGGACACATCTAGATCATAG 57.194 38.462 1.03 4.45 45.65 2.23
2372 5067 8.800370 GATGTCTAGGACACATCTAGATCATA 57.200 38.462 13.27 0.00 45.65 2.15
2373 5068 7.701539 GATGTCTAGGACACATCTAGATCAT 57.298 40.000 13.27 0.00 45.65 2.45
2381 5076 5.482908 ACAAACTGATGTCTAGGACACATC 58.517 41.667 13.54 13.54 45.65 3.06
2382 5077 5.482908 GACAAACTGATGTCTAGGACACAT 58.517 41.667 2.34 0.00 45.65 3.21
2383 5078 4.883083 GACAAACTGATGTCTAGGACACA 58.117 43.478 2.34 3.44 45.65 3.72
2393 5088 9.376075 CTAGATGTGAATTAGACAAACTGATGT 57.624 33.333 0.00 0.00 35.90 3.06
2394 5089 9.591792 TCTAGATGTGAATTAGACAAACTGATG 57.408 33.333 0.00 0.00 0.00 3.07
2396 5091 9.591792 CATCTAGATGTGAATTAGACAAACTGA 57.408 33.333 22.42 0.00 34.23 3.41
2424 5119 8.730680 GGAGCTTAGATGTGACATCTTTAAAAA 58.269 33.333 30.49 17.95 0.00 1.94
2425 5120 7.336931 GGGAGCTTAGATGTGACATCTTTAAAA 59.663 37.037 30.49 18.29 0.00 1.52
2426 5121 6.823689 GGGAGCTTAGATGTGACATCTTTAAA 59.176 38.462 30.49 18.61 0.00 1.52
2427 5122 6.070251 TGGGAGCTTAGATGTGACATCTTTAA 60.070 38.462 30.49 19.26 0.00 1.52
2428 5123 5.425217 TGGGAGCTTAGATGTGACATCTTTA 59.575 40.000 30.49 18.53 0.00 1.85
2429 5124 4.225942 TGGGAGCTTAGATGTGACATCTTT 59.774 41.667 30.49 15.32 0.00 2.52
2430 5125 3.776969 TGGGAGCTTAGATGTGACATCTT 59.223 43.478 30.49 14.69 0.00 2.40
2431 5126 3.133721 GTGGGAGCTTAGATGTGACATCT 59.866 47.826 28.69 28.69 0.00 2.90
2432 5127 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
2433 5128 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
2434 5129 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
2435 5130 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
2436 5131 4.263462 ACATTTGTGGGAGCTTAGATGTGA 60.263 41.667 0.00 0.00 0.00 3.58
2437 5132 4.012374 ACATTTGTGGGAGCTTAGATGTG 58.988 43.478 0.00 0.00 0.00 3.21
2438 5133 4.307032 ACATTTGTGGGAGCTTAGATGT 57.693 40.909 0.00 0.00 0.00 3.06
2439 5134 7.335422 GGATATACATTTGTGGGAGCTTAGATG 59.665 40.741 0.00 0.00 0.00 2.90
2440 5135 7.017551 TGGATATACATTTGTGGGAGCTTAGAT 59.982 37.037 0.00 0.00 0.00 1.98
2441 5136 6.328934 TGGATATACATTTGTGGGAGCTTAGA 59.671 38.462 0.00 0.00 0.00 2.10
2442 5137 6.533730 TGGATATACATTTGTGGGAGCTTAG 58.466 40.000 0.00 0.00 0.00 2.18
2443 5138 6.508030 TGGATATACATTTGTGGGAGCTTA 57.492 37.500 0.00 0.00 0.00 3.09
2444 5139 5.387113 TGGATATACATTTGTGGGAGCTT 57.613 39.130 0.00 0.00 0.00 3.74
2445 5140 5.387113 TTGGATATACATTTGTGGGAGCT 57.613 39.130 0.00 0.00 0.00 4.09
2446 5141 7.944729 ATATTGGATATACATTTGTGGGAGC 57.055 36.000 0.00 0.00 0.00 4.70
2505 5200 6.056884 TCTGTTTGTGGTACGGTCTATTTTT 58.943 36.000 0.00 0.00 0.00 1.94
2506 5201 5.613329 TCTGTTTGTGGTACGGTCTATTTT 58.387 37.500 0.00 0.00 0.00 1.82
2507 5202 5.217978 TCTGTTTGTGGTACGGTCTATTT 57.782 39.130 0.00 0.00 0.00 1.40
2508 5203 4.282703 ACTCTGTTTGTGGTACGGTCTATT 59.717 41.667 0.00 0.00 0.00 1.73
2509 5204 3.830755 ACTCTGTTTGTGGTACGGTCTAT 59.169 43.478 0.00 0.00 0.00 1.98
2510 5205 3.005050 CACTCTGTTTGTGGTACGGTCTA 59.995 47.826 0.00 0.00 0.00 2.59
2511 5206 2.037144 ACTCTGTTTGTGGTACGGTCT 58.963 47.619 0.00 0.00 0.00 3.85
2512 5207 2.132762 CACTCTGTTTGTGGTACGGTC 58.867 52.381 0.00 0.00 0.00 4.79
2513 5208 2.234300 CACTCTGTTTGTGGTACGGT 57.766 50.000 0.00 0.00 0.00 4.83
2520 5215 2.225019 GCTGATGTCCACTCTGTTTGTG 59.775 50.000 0.00 0.00 35.39 3.33
2521 5216 2.105477 AGCTGATGTCCACTCTGTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
2522 5217 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
2523 5218 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
2524 5219 3.834813 TCTAAGCTGATGTCCACTCTGTT 59.165 43.478 0.00 0.00 0.00 3.16
2525 5220 3.435275 TCTAAGCTGATGTCCACTCTGT 58.565 45.455 0.00 0.00 0.00 3.41
2526 5221 4.370049 CATCTAAGCTGATGTCCACTCTG 58.630 47.826 5.99 0.00 39.05 3.35
2527 5222 4.669206 CATCTAAGCTGATGTCCACTCT 57.331 45.455 5.99 0.00 39.05 3.24
2535 5230 8.355913 TCTAGTTATGTCACATCTAAGCTGATG 58.644 37.037 11.48 11.48 46.61 3.07
2536 5231 8.470657 TCTAGTTATGTCACATCTAAGCTGAT 57.529 34.615 0.00 0.00 0.00 2.90
2537 5232 7.881775 TCTAGTTATGTCACATCTAAGCTGA 57.118 36.000 0.00 0.00 0.00 4.26
2538 5233 8.140628 ACATCTAGTTATGTCACATCTAAGCTG 58.859 37.037 0.00 0.00 35.08 4.24
2539 5234 8.140628 CACATCTAGTTATGTCACATCTAAGCT 58.859 37.037 0.00 0.00 38.01 3.74
2540 5235 7.923344 ACACATCTAGTTATGTCACATCTAAGC 59.077 37.037 0.00 0.00 38.01 3.09
2541 5236 9.809096 AACACATCTAGTTATGTCACATCTAAG 57.191 33.333 0.00 0.00 38.01 2.18
2542 5237 9.803315 GAACACATCTAGTTATGTCACATCTAA 57.197 33.333 0.00 0.00 38.01 2.10
2543 5238 9.190317 AGAACACATCTAGTTATGTCACATCTA 57.810 33.333 0.00 0.00 38.01 1.98
2544 5239 8.072321 AGAACACATCTAGTTATGTCACATCT 57.928 34.615 0.00 0.00 38.01 2.90
2558 5253 7.014326 ACAAAGTGTCTGTCTAGAACACATCTA 59.986 37.037 22.19 0.00 39.71 1.98
2559 5254 6.183360 ACAAAGTGTCTGTCTAGAACACATCT 60.183 38.462 22.19 8.51 42.48 2.90
2560 5255 5.986135 ACAAAGTGTCTGTCTAGAACACATC 59.014 40.000 22.19 8.97 37.39 3.06
2561 5256 5.755375 CACAAAGTGTCTGTCTAGAACACAT 59.245 40.000 22.19 11.91 37.39 3.21
2562 5257 5.109210 CACAAAGTGTCTGTCTAGAACACA 58.891 41.667 22.19 10.98 37.39 3.72
2563 5258 5.109903 ACACAAAGTGTCTGTCTAGAACAC 58.890 41.667 15.47 15.47 43.92 3.32
2564 5259 5.339008 ACACAAAGTGTCTGTCTAGAACA 57.661 39.130 0.00 0.00 43.92 3.18
2565 5260 7.491696 AGTTAACACAAAGTGTCTGTCTAGAAC 59.508 37.037 8.61 0.00 46.79 3.01
2566 5261 7.553334 AGTTAACACAAAGTGTCTGTCTAGAA 58.447 34.615 8.61 0.00 46.79 2.10
2567 5262 7.108841 AGTTAACACAAAGTGTCTGTCTAGA 57.891 36.000 8.61 0.00 46.79 2.43
2568 5263 8.350722 TCTAGTTAACACAAAGTGTCTGTCTAG 58.649 37.037 8.61 12.01 46.79 2.43
2569 5264 8.229253 TCTAGTTAACACAAAGTGTCTGTCTA 57.771 34.615 8.61 4.45 46.79 2.59
2570 5265 7.108841 TCTAGTTAACACAAAGTGTCTGTCT 57.891 36.000 8.61 3.63 46.79 3.41
2571 5266 7.569591 GCATCTAGTTAACACAAAGTGTCTGTC 60.570 40.741 8.61 0.00 46.79 3.51
2572 5267 6.202954 GCATCTAGTTAACACAAAGTGTCTGT 59.797 38.462 8.61 0.00 46.79 3.41
2573 5268 6.347725 GGCATCTAGTTAACACAAAGTGTCTG 60.348 42.308 8.61 0.20 46.79 3.51
2574 5269 5.701290 GGCATCTAGTTAACACAAAGTGTCT 59.299 40.000 8.61 0.00 46.79 3.41
2575 5270 5.389516 CGGCATCTAGTTAACACAAAGTGTC 60.390 44.000 8.61 0.00 46.79 3.67
2577 5272 4.142902 CCGGCATCTAGTTAACACAAAGTG 60.143 45.833 8.61 0.00 39.75 3.16
2578 5273 4.000988 CCGGCATCTAGTTAACACAAAGT 58.999 43.478 8.61 0.00 0.00 2.66
2579 5274 3.181510 GCCGGCATCTAGTTAACACAAAG 60.182 47.826 24.80 0.00 0.00 2.77
2580 5275 2.745281 GCCGGCATCTAGTTAACACAAA 59.255 45.455 24.80 0.00 0.00 2.83
2581 5276 2.352388 GCCGGCATCTAGTTAACACAA 58.648 47.619 24.80 0.00 0.00 3.33
2582 5277 1.737696 CGCCGGCATCTAGTTAACACA 60.738 52.381 28.98 0.00 0.00 3.72
2583 5278 0.928229 CGCCGGCATCTAGTTAACAC 59.072 55.000 28.98 0.00 0.00 3.32
2584 5279 0.818938 TCGCCGGCATCTAGTTAACA 59.181 50.000 28.98 0.00 0.00 2.41
2585 5280 2.150397 ATCGCCGGCATCTAGTTAAC 57.850 50.000 28.98 0.00 0.00 2.01
2763 5463 7.980742 ACAGTTTCGGTAACAGAAAATTTTC 57.019 32.000 21.00 21.00 39.51 2.29
2767 5467 7.911727 GTGTTAACAGTTTCGGTAACAGAAAAT 59.088 33.333 8.98 0.00 39.51 1.82
2784 5484 3.386486 TCTTGCGTGGTAGTGTTAACAG 58.614 45.455 8.98 0.00 0.00 3.16
2788 5488 3.455990 TGTTCTTGCGTGGTAGTGTTA 57.544 42.857 0.00 0.00 0.00 2.41
2792 5492 4.394920 CCATTATTGTTCTTGCGTGGTAGT 59.605 41.667 0.00 0.00 0.00 2.73
2800 5500 4.441913 CCCATCCACCATTATTGTTCTTGC 60.442 45.833 0.00 0.00 0.00 4.01
2804 5504 2.365293 GGCCCATCCACCATTATTGTTC 59.635 50.000 0.00 0.00 34.01 3.18
2807 6071 2.085118 TGGCCCATCCACCATTATTG 57.915 50.000 0.00 0.00 40.72 1.90
2836 6100 7.052873 AGTAGCACATCTTATCAGCATCTTTT 58.947 34.615 0.00 0.00 0.00 2.27
2921 6195 3.005367 ATGATGGAAACAACAAACGGTCC 59.995 43.478 0.00 0.00 46.79 4.46
2924 6198 4.235939 TGATGATGGAAACAACAAACGG 57.764 40.909 0.00 0.00 46.79 4.44
2959 6233 8.480643 AAACACCATTTTGTTTATTTCGAACA 57.519 26.923 0.00 0.00 45.77 3.18
3024 6298 0.457853 ACGAACGGTGATGATCCACG 60.458 55.000 4.65 4.65 37.91 4.94
3133 6407 2.108566 CTGGCGCCTCCATCTCAG 59.891 66.667 29.70 10.15 45.50 3.35
3145 6419 1.243902 TTTTGTTAGCTTCCCTGGCG 58.756 50.000 0.00 0.00 34.52 5.69
3166 6440 2.168458 TCCATGTCCCCGAGTTATCA 57.832 50.000 0.00 0.00 0.00 2.15
3232 6506 7.696992 TCTTAAACCCATCTACCATGTTTTC 57.303 36.000 0.00 0.00 32.02 2.29
3241 6515 9.668497 AAAACAGTCTATCTTAAACCCATCTAC 57.332 33.333 0.00 0.00 0.00 2.59
3270 6546 7.607607 TCGTATATAAGAATGGCATTGCTTGAT 59.392 33.333 19.07 17.14 0.00 2.57
3271 6547 6.934083 TCGTATATAAGAATGGCATTGCTTGA 59.066 34.615 19.07 12.43 0.00 3.02
3272 6548 7.132694 TCGTATATAAGAATGGCATTGCTTG 57.867 36.000 19.07 7.80 0.00 4.01
3273 6549 7.391554 ACATCGTATATAAGAATGGCATTGCTT 59.608 33.333 19.07 20.12 0.00 3.91
3274 6550 6.881065 ACATCGTATATAAGAATGGCATTGCT 59.119 34.615 19.07 11.46 0.00 3.91
3275 6551 7.076842 ACATCGTATATAAGAATGGCATTGC 57.923 36.000 19.07 9.31 0.00 3.56
3276 6552 9.333497 CAAACATCGTATATAAGAATGGCATTG 57.667 33.333 19.07 1.20 0.00 2.82
3277 6553 9.066892 ACAAACATCGTATATAAGAATGGCATT 57.933 29.630 13.54 13.54 0.00 3.56
3278 6554 8.621532 ACAAACATCGTATATAAGAATGGCAT 57.378 30.769 2.38 0.00 0.00 4.40
3280 6556 7.172532 TGGACAAACATCGTATATAAGAATGGC 59.827 37.037 2.38 2.87 0.00 4.40
3298 6700 9.323963 CACATTTTAAACAAAACTTGGACAAAC 57.676 29.630 0.00 0.00 34.12 2.93
3347 6750 2.440409 CTTTGTCTAGGCACCTGCATT 58.560 47.619 0.00 0.00 44.36 3.56
3360 6763 0.957395 CCATGACTGCGGCTTTGTCT 60.957 55.000 17.04 5.70 0.00 3.41
3375 6778 3.143675 CAGGTCGACTGGTTCCATG 57.856 57.895 16.46 0.00 43.70 3.66
3466 6869 4.072131 GACCAGATAGGCAACAAGTTCAA 58.928 43.478 0.00 0.00 43.14 2.69
3475 6878 0.911769 CAGGTGGACCAGATAGGCAA 59.088 55.000 0.00 0.00 43.14 4.52
3732 7135 3.723348 GCCACGGTTGCGAAGACC 61.723 66.667 0.00 0.00 0.00 3.85
3760 7163 4.785512 CTTCTCGACCAGCGCGCT 62.786 66.667 31.32 31.32 40.61 5.92
3761 7164 4.778415 TCTTCTCGACCAGCGCGC 62.778 66.667 26.66 26.66 40.61 6.86
3870 7273 4.071875 TGCCCCACGTACGCGAAT 62.072 61.111 15.93 0.00 42.00 3.34
3958 7361 0.995024 AGGAAGAACCCCATGGACAG 59.005 55.000 15.22 3.88 40.05 3.51
4122 7525 1.374252 CTTGTACTCGTGCCGCCTT 60.374 57.895 0.00 0.00 0.00 4.35
4190 7593 1.204941 CGTCGTCCATCTCCTTTTCCT 59.795 52.381 0.00 0.00 0.00 3.36
4223 7626 0.253044 CATCCCCACGGTGTTCTCAT 59.747 55.000 7.45 0.00 0.00 2.90
4233 7636 0.106708 CCTACACATCCATCCCCACG 59.893 60.000 0.00 0.00 0.00 4.94
4289 7692 9.817809 TCTAACCATCTATGTTTACACTCAATC 57.182 33.333 0.00 0.00 0.00 2.67
4350 7758 2.708861 ACACCCATGTCAAGTCTGGTAA 59.291 45.455 0.00 0.00 31.55 2.85
4352 7760 1.140312 ACACCCATGTCAAGTCTGGT 58.860 50.000 0.00 0.00 31.55 4.00
4353 7761 2.154462 GAACACCCATGTCAAGTCTGG 58.846 52.381 0.00 0.00 38.45 3.86
4392 7800 3.938963 ACACATCGCCGAAATGTCTAAAT 59.061 39.130 0.00 0.00 35.19 1.40
4398 7806 1.234821 AACACACATCGCCGAAATGT 58.765 45.000 0.00 0.00 37.85 2.71
4403 7811 1.424403 CACTAAACACACATCGCCGA 58.576 50.000 0.00 0.00 0.00 5.54
4407 7815 3.313012 TCTCCCACTAAACACACATCG 57.687 47.619 0.00 0.00 0.00 3.84
4436 7844 4.440214 GCACTTTGCAATCGACGG 57.560 55.556 0.00 0.00 44.26 4.79
4446 7854 1.972872 AAGTCACCTGAGGCACTTTG 58.027 50.000 9.96 0.00 41.55 2.77
4457 7865 5.941788 ACCTTGAGATTAACAAAGTCACCT 58.058 37.500 0.00 0.00 0.00 4.00
4512 7920 1.295101 CACACGCACATCCTACCCA 59.705 57.895 0.00 0.00 0.00 4.51
4520 7928 3.871006 CCTATGAACATACACACGCACAT 59.129 43.478 0.00 0.00 0.00 3.21
4522 7930 2.607635 CCCTATGAACATACACACGCAC 59.392 50.000 0.00 0.00 0.00 5.34
4544 7952 4.201589 GCTCACATACACACGTACATTCAC 60.202 45.833 0.00 0.00 0.00 3.18
4598 8035 7.481642 TGTTTTACAACAACGGATACATTTGT 58.518 30.769 0.00 0.00 42.63 2.83
4627 8064 3.084039 GTCATCATTGCCTCCTGTCAAA 58.916 45.455 0.00 0.00 0.00 2.69
4800 8248 3.305608 CCTCTTCCTGTGTTTCATTTGCC 60.306 47.826 0.00 0.00 0.00 4.52
4801 8249 3.858503 GCCTCTTCCTGTGTTTCATTTGC 60.859 47.826 0.00 0.00 0.00 3.68
4865 8313 3.007635 GTTGCTAACCCCTATGTGTCAC 58.992 50.000 0.00 0.00 0.00 3.67
4885 8333 0.106519 GCCAGGTTAGCCATGATGGT 60.107 55.000 13.84 2.65 40.46 3.55
4899 8347 0.107312 CCACCATCTTCAGAGCCAGG 60.107 60.000 0.00 0.00 0.00 4.45
4959 8411 5.928264 CACATGTCCATTAATGCTCTATCGA 59.072 40.000 10.11 0.00 0.00 3.59
4988 8440 0.822164 AGGCCGCTTAACTGTACGAT 59.178 50.000 0.00 0.00 0.00 3.73
4989 8441 0.171903 GAGGCCGCTTAACTGTACGA 59.828 55.000 0.00 0.00 0.00 3.43
4990 8442 0.804933 GGAGGCCGCTTAACTGTACG 60.805 60.000 6.40 0.00 0.00 3.67
4993 8445 0.109723 TTTGGAGGCCGCTTAACTGT 59.890 50.000 6.40 0.00 0.00 3.55
4997 8449 0.960364 CAGCTTTGGAGGCCGCTTAA 60.960 55.000 6.40 0.00 0.00 1.85
5162 8614 3.261390 CCTCTTTTTGGAATTGATGGCCA 59.739 43.478 8.56 8.56 0.00 5.36
5176 8628 3.138468 ACCTGCTTACCTGACCTCTTTTT 59.862 43.478 0.00 0.00 0.00 1.94
5177 8629 2.711547 ACCTGCTTACCTGACCTCTTTT 59.288 45.455 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.