Multiple sequence alignment - TraesCS5B01G413600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G413600 chr5B 100.000 4391 0 0 1 4391 588514145 588509755 0.000000e+00 8109.0
1 TraesCS5B01G413600 chr5A 94.831 3366 112 22 442 3770 598864791 598861451 0.000000e+00 5195.0
2 TraesCS5B01G413600 chr5A 92.356 641 41 5 3754 4391 598860848 598860213 0.000000e+00 905.0
3 TraesCS5B01G413600 chr5D 90.016 3696 221 55 207 3823 480364878 480361252 0.000000e+00 4645.0
4 TraesCS5B01G413600 chr5D 86.667 300 28 6 4103 4391 480361248 480360950 5.480000e-84 322.0
5 TraesCS5B01G413600 chr5D 96.970 33 0 1 3714 3745 311746470 311746502 2.000000e-03 54.7
6 TraesCS5B01G413600 chr6A 76.968 343 37 17 442 773 29402069 29401758 1.630000e-34 158.0
7 TraesCS5B01G413600 chr7B 78.397 287 28 14 490 773 116070940 116070685 5.880000e-34 156.0
8 TraesCS5B01G413600 chr6B 77.700 287 30 13 490 773 720150977 720151232 1.270000e-30 145.0
9 TraesCS5B01G413600 chr4D 77.622 286 30 12 490 772 435252533 435252279 4.580000e-30 143.0
10 TraesCS5B01G413600 chr4D 88.679 106 9 2 490 592 361189402 361189297 4.610000e-25 126.0
11 TraesCS5B01G413600 chr3D 82.716 162 17 6 442 592 23497952 23497791 2.760000e-27 134.0
12 TraesCS5B01G413600 chr3B 77.003 287 32 15 490 773 711740306 711740561 2.760000e-27 134.0
13 TraesCS5B01G413600 chr7A 76.655 287 33 13 490 773 440950648 440950393 1.280000e-25 128.0
14 TraesCS5B01G413600 chr2B 82.099 162 18 5 442 592 169268900 169269061 1.280000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G413600 chr5B 588509755 588514145 4390 True 8109.0 8109 100.0000 1 4391 1 chr5B.!!$R1 4390
1 TraesCS5B01G413600 chr5A 598860213 598864791 4578 True 3050.0 5195 93.5935 442 4391 2 chr5A.!!$R1 3949
2 TraesCS5B01G413600 chr5D 480360950 480364878 3928 True 2483.5 4645 88.3415 207 4391 2 chr5D.!!$R1 4184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.110823 GTACGCAACGTGCCTTCAAG 60.111 55.000 2.35 0.0 41.12 3.02 F
108 109 0.179215 CGCAACGTGCCTTCAAGATC 60.179 55.000 0.00 0.0 41.12 2.75 F
261 262 0.179250 CGCGTTCCACATTTCGACTG 60.179 55.000 0.00 0.0 0.00 3.51 F
629 660 0.740737 CGGTGAAGGCAATCCAATCC 59.259 55.000 0.00 0.0 33.74 3.01 F
1306 1391 1.077805 TCGGCCTACTCCAAGTCCA 59.922 57.895 0.00 0.0 0.00 4.02 F
2634 2719 0.110486 GCTTTGTGGACCAAGGGAGA 59.890 55.000 0.00 0.0 33.75 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1994 0.250684 TGCTTTCCGATGCTCACCAA 60.251 50.000 0.00 0.0 0.00 3.67 R
2184 2269 2.025981 ACCATTCTGCTCATAGCCAACA 60.026 45.455 0.00 0.0 41.51 3.33 R
2313 2398 0.037326 TCTGCTTGCCGTAGTCAAGG 60.037 55.000 5.10 0.0 44.43 3.61 R
2430 2515 0.328258 CCCGATCAAACACCCTCCTT 59.672 55.000 0.00 0.0 0.00 3.36 R
2964 3049 1.971357 GTCTCTTTCCTCACACCTCCA 59.029 52.381 0.00 0.0 0.00 3.86 R
3547 3647 0.320050 GGCAAAATTCAGCCGGGAAA 59.680 50.000 2.18 0.0 41.70 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.157738 GGATATCACATCCCAAGCAGC 58.842 52.381 4.83 0.00 32.09 5.25
25 26 2.487805 GGATATCACATCCCAAGCAGCA 60.488 50.000 4.83 0.00 32.09 4.41
26 27 2.804986 TATCACATCCCAAGCAGCAA 57.195 45.000 0.00 0.00 0.00 3.91
27 28 1.471119 ATCACATCCCAAGCAGCAAG 58.529 50.000 0.00 0.00 0.00 4.01
28 29 1.214589 CACATCCCAAGCAGCAAGC 59.785 57.895 0.00 0.00 46.19 4.01
40 41 2.569059 GCAGCAAGCAATCCTATGAGA 58.431 47.619 0.00 0.00 44.79 3.27
41 42 2.290093 GCAGCAAGCAATCCTATGAGAC 59.710 50.000 0.00 0.00 44.79 3.36
42 43 3.538591 CAGCAAGCAATCCTATGAGACA 58.461 45.455 0.00 0.00 0.00 3.41
43 44 4.135306 CAGCAAGCAATCCTATGAGACAT 58.865 43.478 0.00 0.00 0.00 3.06
44 45 4.579340 CAGCAAGCAATCCTATGAGACATT 59.421 41.667 0.00 0.00 0.00 2.71
45 46 4.820716 AGCAAGCAATCCTATGAGACATTC 59.179 41.667 0.00 0.00 0.00 2.67
46 47 4.319333 GCAAGCAATCCTATGAGACATTCG 60.319 45.833 0.00 0.00 0.00 3.34
47 48 4.679373 AGCAATCCTATGAGACATTCGT 57.321 40.909 0.00 0.00 0.00 3.85
48 49 4.626042 AGCAATCCTATGAGACATTCGTC 58.374 43.478 0.00 0.00 42.95 4.20
76 77 9.875691 ATTTAATTCTAGAAAAGCAATCAACCC 57.124 29.630 9.71 0.00 0.00 4.11
77 78 8.650143 TTAATTCTAGAAAAGCAATCAACCCT 57.350 30.769 9.71 0.00 0.00 4.34
78 79 6.765915 ATTCTAGAAAAGCAATCAACCCTC 57.234 37.500 9.71 0.00 0.00 4.30
79 80 4.589908 TCTAGAAAAGCAATCAACCCTCC 58.410 43.478 0.00 0.00 0.00 4.30
80 81 3.243359 AGAAAAGCAATCAACCCTCCA 57.757 42.857 0.00 0.00 0.00 3.86
81 82 3.782992 AGAAAAGCAATCAACCCTCCAT 58.217 40.909 0.00 0.00 0.00 3.41
82 83 4.162651 AGAAAAGCAATCAACCCTCCATT 58.837 39.130 0.00 0.00 0.00 3.16
83 84 4.594491 AGAAAAGCAATCAACCCTCCATTT 59.406 37.500 0.00 0.00 0.00 2.32
84 85 4.541973 AAAGCAATCAACCCTCCATTTC 57.458 40.909 0.00 0.00 0.00 2.17
85 86 3.463048 AGCAATCAACCCTCCATTTCT 57.537 42.857 0.00 0.00 0.00 2.52
86 87 3.094572 AGCAATCAACCCTCCATTTCTG 58.905 45.455 0.00 0.00 0.00 3.02
87 88 2.827921 GCAATCAACCCTCCATTTCTGT 59.172 45.455 0.00 0.00 0.00 3.41
88 89 4.016444 GCAATCAACCCTCCATTTCTGTA 58.984 43.478 0.00 0.00 0.00 2.74
89 90 4.142381 GCAATCAACCCTCCATTTCTGTAC 60.142 45.833 0.00 0.00 0.00 2.90
90 91 3.328382 TCAACCCTCCATTTCTGTACG 57.672 47.619 0.00 0.00 0.00 3.67
91 92 1.737793 CAACCCTCCATTTCTGTACGC 59.262 52.381 0.00 0.00 0.00 4.42
92 93 0.981183 ACCCTCCATTTCTGTACGCA 59.019 50.000 0.00 0.00 0.00 5.24
93 94 1.349688 ACCCTCCATTTCTGTACGCAA 59.650 47.619 0.00 0.00 0.00 4.85
94 95 1.737793 CCCTCCATTTCTGTACGCAAC 59.262 52.381 0.00 0.00 0.00 4.17
95 96 1.393539 CCTCCATTTCTGTACGCAACG 59.606 52.381 0.00 0.00 0.00 4.10
96 97 2.066262 CTCCATTTCTGTACGCAACGT 58.934 47.619 0.00 0.00 44.35 3.99
97 98 1.795872 TCCATTTCTGTACGCAACGTG 59.204 47.619 2.35 0.00 41.39 4.49
98 99 1.591248 CATTTCTGTACGCAACGTGC 58.409 50.000 2.35 1.70 41.39 5.34
99 100 0.515564 ATTTCTGTACGCAACGTGCC 59.484 50.000 2.35 0.00 41.42 5.01
100 101 0.531090 TTTCTGTACGCAACGTGCCT 60.531 50.000 2.35 0.00 41.42 4.75
101 102 0.531090 TTCTGTACGCAACGTGCCTT 60.531 50.000 2.35 0.00 41.42 4.35
102 103 0.942410 TCTGTACGCAACGTGCCTTC 60.942 55.000 2.35 0.00 41.42 3.46
103 104 1.218875 CTGTACGCAACGTGCCTTCA 61.219 55.000 2.35 0.00 41.42 3.02
104 105 0.810426 TGTACGCAACGTGCCTTCAA 60.810 50.000 2.35 0.00 41.42 2.69
105 106 0.110823 GTACGCAACGTGCCTTCAAG 60.111 55.000 2.35 0.00 41.12 3.02
106 107 0.249531 TACGCAACGTGCCTTCAAGA 60.250 50.000 2.35 0.00 41.12 3.02
107 108 0.884704 ACGCAACGTGCCTTCAAGAT 60.885 50.000 0.00 0.00 41.12 2.40
108 109 0.179215 CGCAACGTGCCTTCAAGATC 60.179 55.000 0.00 0.00 41.12 2.75
109 110 0.874390 GCAACGTGCCTTCAAGATCA 59.126 50.000 0.00 0.00 37.42 2.92
110 111 1.470098 GCAACGTGCCTTCAAGATCAT 59.530 47.619 0.00 0.00 37.42 2.45
111 112 2.677836 GCAACGTGCCTTCAAGATCATA 59.322 45.455 0.00 0.00 37.42 2.15
112 113 3.485877 GCAACGTGCCTTCAAGATCATAC 60.486 47.826 0.00 0.00 37.42 2.39
113 114 3.895232 ACGTGCCTTCAAGATCATACT 57.105 42.857 0.00 0.00 0.00 2.12
114 115 3.786635 ACGTGCCTTCAAGATCATACTC 58.213 45.455 0.00 0.00 0.00 2.59
115 116 3.449018 ACGTGCCTTCAAGATCATACTCT 59.551 43.478 0.00 0.00 0.00 3.24
116 117 3.801050 CGTGCCTTCAAGATCATACTCTG 59.199 47.826 0.00 0.00 0.00 3.35
117 118 4.440663 CGTGCCTTCAAGATCATACTCTGA 60.441 45.833 0.00 0.00 38.53 3.27
118 119 5.423015 GTGCCTTCAAGATCATACTCTGAA 58.577 41.667 0.00 0.00 37.44 3.02
119 120 6.054295 GTGCCTTCAAGATCATACTCTGAAT 58.946 40.000 0.00 0.00 37.44 2.57
120 121 6.202570 GTGCCTTCAAGATCATACTCTGAATC 59.797 42.308 0.00 0.00 37.44 2.52
121 122 6.099413 TGCCTTCAAGATCATACTCTGAATCT 59.901 38.462 0.00 0.00 37.44 2.40
122 123 6.646240 GCCTTCAAGATCATACTCTGAATCTC 59.354 42.308 0.00 0.00 37.44 2.75
123 124 7.153985 CCTTCAAGATCATACTCTGAATCTCC 58.846 42.308 0.00 0.00 37.44 3.71
124 125 7.201983 CCTTCAAGATCATACTCTGAATCTCCA 60.202 40.741 0.00 0.00 37.44 3.86
125 126 7.048629 TCAAGATCATACTCTGAATCTCCAC 57.951 40.000 0.00 0.00 37.44 4.02
126 127 6.838090 TCAAGATCATACTCTGAATCTCCACT 59.162 38.462 0.00 0.00 37.44 4.00
127 128 6.653526 AGATCATACTCTGAATCTCCACTG 57.346 41.667 0.00 0.00 37.44 3.66
128 129 6.372104 AGATCATACTCTGAATCTCCACTGA 58.628 40.000 0.00 0.00 37.44 3.41
129 130 6.491062 AGATCATACTCTGAATCTCCACTGAG 59.509 42.308 0.00 0.00 37.44 3.35
130 131 6.372104 ATCATACTCTGAATCTCCACTGAGA 58.628 40.000 0.00 0.00 42.89 3.27
139 140 3.304911 TCTCCACTGAGATGTAGGGAG 57.695 52.381 0.00 0.00 42.73 4.30
140 141 2.583101 TCTCCACTGAGATGTAGGGAGT 59.417 50.000 0.00 0.00 42.73 3.85
141 142 3.786450 TCTCCACTGAGATGTAGGGAGTA 59.214 47.826 0.00 0.00 42.73 2.59
142 143 4.417183 TCTCCACTGAGATGTAGGGAGTAT 59.583 45.833 0.00 0.00 42.73 2.12
143 144 5.611408 TCTCCACTGAGATGTAGGGAGTATA 59.389 44.000 0.00 0.00 42.73 1.47
144 145 6.102762 TCTCCACTGAGATGTAGGGAGTATAA 59.897 42.308 0.00 0.00 42.73 0.98
145 146 6.864421 TCCACTGAGATGTAGGGAGTATAAT 58.136 40.000 0.00 0.00 0.00 1.28
146 147 7.996788 TCCACTGAGATGTAGGGAGTATAATA 58.003 38.462 0.00 0.00 0.00 0.98
147 148 8.624670 TCCACTGAGATGTAGGGAGTATAATAT 58.375 37.037 0.00 0.00 0.00 1.28
148 149 8.690884 CCACTGAGATGTAGGGAGTATAATATG 58.309 40.741 0.00 0.00 0.00 1.78
149 150 9.467796 CACTGAGATGTAGGGAGTATAATATGA 57.532 37.037 0.00 0.00 0.00 2.15
154 155 9.790297 AGATGTAGGGAGTATAATATGAATGGT 57.210 33.333 0.00 0.00 0.00 3.55
156 157 8.966155 TGTAGGGAGTATAATATGAATGGTCA 57.034 34.615 0.00 0.00 38.41 4.02
157 158 9.387397 TGTAGGGAGTATAATATGAATGGTCAA 57.613 33.333 0.00 0.00 37.30 3.18
168 169 7.722949 ATATGAATGGTCAAATTGACTTGGT 57.277 32.000 23.30 8.57 46.19 3.67
169 170 8.821686 ATATGAATGGTCAAATTGACTTGGTA 57.178 30.769 23.30 9.90 46.19 3.25
170 171 6.573664 TGAATGGTCAAATTGACTTGGTAG 57.426 37.500 23.30 0.00 46.19 3.18
171 172 6.303054 TGAATGGTCAAATTGACTTGGTAGA 58.697 36.000 23.30 2.26 46.19 2.59
172 173 6.947733 TGAATGGTCAAATTGACTTGGTAGAT 59.052 34.615 23.30 4.29 46.19 1.98
173 174 7.121168 TGAATGGTCAAATTGACTTGGTAGATC 59.879 37.037 23.30 11.94 46.19 2.75
174 175 4.935205 TGGTCAAATTGACTTGGTAGATCG 59.065 41.667 23.30 0.00 46.19 3.69
175 176 4.935808 GGTCAAATTGACTTGGTAGATCGT 59.064 41.667 23.30 0.00 46.19 3.73
176 177 5.411669 GGTCAAATTGACTTGGTAGATCGTT 59.588 40.000 23.30 0.00 46.19 3.85
177 178 6.072673 GGTCAAATTGACTTGGTAGATCGTTT 60.073 38.462 23.30 0.00 46.19 3.60
178 179 7.118680 GGTCAAATTGACTTGGTAGATCGTTTA 59.881 37.037 23.30 0.00 46.19 2.01
179 180 8.665685 GTCAAATTGACTTGGTAGATCGTTTAT 58.334 33.333 18.03 0.00 43.73 1.40
180 181 8.664798 TCAAATTGACTTGGTAGATCGTTTATG 58.335 33.333 0.00 0.00 0.00 1.90
181 182 7.553881 AATTGACTTGGTAGATCGTTTATGG 57.446 36.000 0.00 0.00 0.00 2.74
182 183 5.670792 TGACTTGGTAGATCGTTTATGGT 57.329 39.130 0.00 0.00 0.00 3.55
183 184 6.778834 TGACTTGGTAGATCGTTTATGGTA 57.221 37.500 0.00 0.00 0.00 3.25
184 185 6.802608 TGACTTGGTAGATCGTTTATGGTAG 58.197 40.000 0.00 0.00 0.00 3.18
185 186 5.598769 ACTTGGTAGATCGTTTATGGTAGC 58.401 41.667 0.00 0.00 0.00 3.58
186 187 5.128171 ACTTGGTAGATCGTTTATGGTAGCA 59.872 40.000 0.00 0.00 0.00 3.49
187 188 5.601583 TGGTAGATCGTTTATGGTAGCAA 57.398 39.130 0.00 0.00 0.00 3.91
188 189 5.353938 TGGTAGATCGTTTATGGTAGCAAC 58.646 41.667 0.00 0.00 0.00 4.17
189 190 5.128171 TGGTAGATCGTTTATGGTAGCAACT 59.872 40.000 0.00 0.00 0.00 3.16
190 191 6.321945 TGGTAGATCGTTTATGGTAGCAACTA 59.678 38.462 0.00 0.00 0.00 2.24
191 192 7.014905 TGGTAGATCGTTTATGGTAGCAACTAT 59.985 37.037 0.00 0.00 0.00 2.12
192 193 7.541437 GGTAGATCGTTTATGGTAGCAACTATC 59.459 40.741 0.00 0.39 0.00 2.08
193 194 7.291411 AGATCGTTTATGGTAGCAACTATCT 57.709 36.000 0.00 2.78 31.48 1.98
194 195 7.727181 AGATCGTTTATGGTAGCAACTATCTT 58.273 34.615 0.00 0.00 32.04 2.40
195 196 7.653713 AGATCGTTTATGGTAGCAACTATCTTG 59.346 37.037 0.00 0.00 32.04 3.02
196 197 6.636705 TCGTTTATGGTAGCAACTATCTTGT 58.363 36.000 0.00 0.00 0.00 3.16
197 198 6.755141 TCGTTTATGGTAGCAACTATCTTGTC 59.245 38.462 0.00 0.00 0.00 3.18
198 199 6.533723 CGTTTATGGTAGCAACTATCTTGTCA 59.466 38.462 0.00 0.00 0.00 3.58
199 200 7.464178 CGTTTATGGTAGCAACTATCTTGTCAC 60.464 40.741 0.00 0.00 0.00 3.67
200 201 3.845178 TGGTAGCAACTATCTTGTCACG 58.155 45.455 0.00 0.00 0.00 4.35
201 202 3.508402 TGGTAGCAACTATCTTGTCACGA 59.492 43.478 0.00 0.00 0.00 4.35
202 203 4.021807 TGGTAGCAACTATCTTGTCACGAA 60.022 41.667 0.00 0.00 0.00 3.85
203 204 5.109903 GGTAGCAACTATCTTGTCACGAAT 58.890 41.667 0.00 0.00 0.00 3.34
204 205 5.005779 GGTAGCAACTATCTTGTCACGAATG 59.994 44.000 0.00 0.00 0.00 2.67
205 206 4.569943 AGCAACTATCTTGTCACGAATGT 58.430 39.130 0.00 0.00 0.00 2.71
226 227 2.074729 AATCTAGCTAGCCGGACTGT 57.925 50.000 16.35 0.00 0.00 3.55
227 228 2.953284 ATCTAGCTAGCCGGACTGTA 57.047 50.000 16.35 0.00 0.00 2.74
228 229 1.964552 TCTAGCTAGCCGGACTGTAC 58.035 55.000 16.35 0.00 0.00 2.90
235 236 2.505557 CCGGACTGTACGAACCGC 60.506 66.667 15.21 0.00 43.37 5.68
257 258 2.202298 GCCGCGTTCCACATTTCG 60.202 61.111 4.92 0.00 0.00 3.46
261 262 0.179250 CGCGTTCCACATTTCGACTG 60.179 55.000 0.00 0.00 0.00 3.51
262 263 1.144969 GCGTTCCACATTTCGACTGA 58.855 50.000 1.35 0.00 0.00 3.41
264 265 2.411547 GCGTTCCACATTTCGACTGAAG 60.412 50.000 1.35 0.00 35.06 3.02
265 266 2.800544 CGTTCCACATTTCGACTGAAGT 59.199 45.455 1.35 0.00 35.06 3.01
266 267 3.985279 CGTTCCACATTTCGACTGAAGTA 59.015 43.478 1.35 0.00 35.06 2.24
267 268 4.090066 CGTTCCACATTTCGACTGAAGTAG 59.910 45.833 1.35 0.00 35.06 2.57
268 269 4.866508 TCCACATTTCGACTGAAGTAGT 57.133 40.909 1.35 0.00 44.02 2.73
269 270 5.970317 TCCACATTTCGACTGAAGTAGTA 57.030 39.130 1.35 0.00 40.53 1.82
270 271 5.950883 TCCACATTTCGACTGAAGTAGTAG 58.049 41.667 1.35 0.00 40.53 2.57
271 272 5.103000 CCACATTTCGACTGAAGTAGTAGG 58.897 45.833 1.35 0.00 40.53 3.18
274 275 6.308282 CACATTTCGACTGAAGTAGTAGGAAC 59.692 42.308 1.35 0.00 40.53 3.62
277 278 3.009916 TCGACTGAAGTAGTAGGAACCCT 59.990 47.826 0.00 0.00 40.53 4.34
297 298 4.820716 CCCTCAATGATTCTGGCTTCTAAG 59.179 45.833 0.00 0.00 0.00 2.18
299 300 6.297582 CCTCAATGATTCTGGCTTCTAAGAT 58.702 40.000 0.00 0.00 0.00 2.40
309 310 2.509964 GGCTTCTAAGATTGGAAGGGGA 59.490 50.000 17.17 0.00 43.47 4.81
312 313 4.723309 CTTCTAAGATTGGAAGGGGATGG 58.277 47.826 10.01 0.00 40.72 3.51
314 315 4.903149 TCTAAGATTGGAAGGGGATGGTA 58.097 43.478 0.00 0.00 0.00 3.25
319 320 2.461739 GGAAGGGGATGGTAGGGGC 61.462 68.421 0.00 0.00 0.00 5.80
321 322 1.007445 AAGGGGATGGTAGGGGCAT 59.993 57.895 0.00 0.00 0.00 4.40
323 324 1.774217 GGGGATGGTAGGGGCATGA 60.774 63.158 0.00 0.00 0.00 3.07
342 343 1.965930 GTGCATGACACGCCTGGAA 60.966 57.895 0.00 0.00 40.07 3.53
343 344 1.965930 TGCATGACACGCCTGGAAC 60.966 57.895 0.00 0.00 0.00 3.62
344 345 1.965930 GCATGACACGCCTGGAACA 60.966 57.895 0.00 0.00 0.00 3.18
345 346 1.514678 GCATGACACGCCTGGAACAA 61.515 55.000 0.00 0.00 38.70 2.83
352 353 1.039856 ACGCCTGGAACAAAGCAATT 58.960 45.000 0.00 0.00 38.70 2.32
354 355 2.030274 ACGCCTGGAACAAAGCAATTAC 60.030 45.455 0.00 0.00 38.70 1.89
367 368 9.566432 AACAAAGCAATTACCATTGGAAATTAA 57.434 25.926 10.37 0.00 40.36 1.40
369 370 8.997323 CAAAGCAATTACCATTGGAAATTAACA 58.003 29.630 10.37 0.00 40.36 2.41
370 371 8.546597 AAGCAATTACCATTGGAAATTAACAC 57.453 30.769 10.37 0.00 40.36 3.32
371 372 7.906327 AGCAATTACCATTGGAAATTAACACT 58.094 30.769 10.37 0.00 40.36 3.55
372 373 7.818930 AGCAATTACCATTGGAAATTAACACTG 59.181 33.333 10.37 0.00 40.36 3.66
378 399 2.802719 TGGAAATTAACACTGCCTCCC 58.197 47.619 0.00 0.00 0.00 4.30
392 413 3.289211 TCCCAGTCCCAGCCCCTA 61.289 66.667 0.00 0.00 0.00 3.53
398 419 1.694696 CAGTCCCAGCCCCTACTAATC 59.305 57.143 0.00 0.00 0.00 1.75
401 422 1.578703 TCCCAGCCCCTACTAATCTGA 59.421 52.381 0.00 0.00 0.00 3.27
402 423 2.022428 TCCCAGCCCCTACTAATCTGAA 60.022 50.000 0.00 0.00 0.00 3.02
403 424 2.982488 CCCAGCCCCTACTAATCTGAAT 59.018 50.000 0.00 0.00 0.00 2.57
404 425 4.140543 TCCCAGCCCCTACTAATCTGAATA 60.141 45.833 0.00 0.00 0.00 1.75
405 426 4.785376 CCCAGCCCCTACTAATCTGAATAT 59.215 45.833 0.00 0.00 0.00 1.28
406 427 5.104735 CCCAGCCCCTACTAATCTGAATATC 60.105 48.000 0.00 0.00 0.00 1.63
407 428 5.723887 CCAGCCCCTACTAATCTGAATATCT 59.276 44.000 0.00 0.00 0.00 1.98
408 429 6.351711 CCAGCCCCTACTAATCTGAATATCTG 60.352 46.154 0.00 0.00 0.00 2.90
409 430 6.438741 CAGCCCCTACTAATCTGAATATCTGA 59.561 42.308 0.00 0.00 0.00 3.27
410 431 7.125507 CAGCCCCTACTAATCTGAATATCTGAT 59.874 40.741 0.00 0.00 36.76 2.90
424 445 9.090103 CTGAATATCTGATAACTTGGTACCCTA 57.910 37.037 10.07 0.00 0.00 3.53
425 446 8.867097 TGAATATCTGATAACTTGGTACCCTAC 58.133 37.037 10.07 0.00 0.00 3.18
426 447 9.091220 GAATATCTGATAACTTGGTACCCTACT 57.909 37.037 10.07 0.00 0.00 2.57
427 448 6.980416 ATCTGATAACTTGGTACCCTACTC 57.020 41.667 10.07 0.00 0.00 2.59
431 452 5.301045 TGATAACTTGGTACCCTACTCATCG 59.699 44.000 10.07 0.00 0.00 3.84
435 456 3.104519 TGGTACCCTACTCATCGGAAA 57.895 47.619 10.07 0.00 0.00 3.13
436 457 3.443052 TGGTACCCTACTCATCGGAAAA 58.557 45.455 10.07 0.00 0.00 2.29
437 458 3.449737 TGGTACCCTACTCATCGGAAAAG 59.550 47.826 10.07 0.00 0.00 2.27
438 459 2.693267 ACCCTACTCATCGGAAAAGC 57.307 50.000 0.00 0.00 0.00 3.51
439 460 2.188817 ACCCTACTCATCGGAAAAGCT 58.811 47.619 0.00 0.00 0.00 3.74
440 461 2.093447 ACCCTACTCATCGGAAAAGCTG 60.093 50.000 0.00 0.00 0.00 4.24
580 607 3.913573 GCACCGTATCTGCACGCG 61.914 66.667 3.53 3.53 40.59 6.01
596 627 1.796796 GCGCCCAAATCAGTCAGTC 59.203 57.895 0.00 0.00 0.00 3.51
623 654 3.486263 CCGTCGGTGAAGGCAATC 58.514 61.111 2.08 0.00 0.00 2.67
624 655 2.106683 CCGTCGGTGAAGGCAATCC 61.107 63.158 2.08 0.00 0.00 3.01
625 656 1.375396 CGTCGGTGAAGGCAATCCA 60.375 57.895 0.00 0.00 33.74 3.41
626 657 0.953471 CGTCGGTGAAGGCAATCCAA 60.953 55.000 0.00 0.00 33.74 3.53
627 658 1.463674 GTCGGTGAAGGCAATCCAAT 58.536 50.000 0.00 0.00 33.74 3.16
628 659 1.401905 GTCGGTGAAGGCAATCCAATC 59.598 52.381 0.00 0.00 33.74 2.67
629 660 0.740737 CGGTGAAGGCAATCCAATCC 59.259 55.000 0.00 0.00 33.74 3.01
630 661 1.851304 GGTGAAGGCAATCCAATCCA 58.149 50.000 0.00 0.00 33.74 3.41
631 662 2.178580 GGTGAAGGCAATCCAATCCAA 58.821 47.619 0.00 0.00 33.74 3.53
632 663 2.767960 GGTGAAGGCAATCCAATCCAAT 59.232 45.455 0.00 0.00 33.74 3.16
656 687 4.897076 CCAATCCAATCAATCAATGGAGGA 59.103 41.667 0.00 0.00 45.82 3.71
658 689 6.126997 CCAATCCAATCAATCAATGGAGGAAA 60.127 38.462 0.00 0.00 45.82 3.13
659 690 7.332557 CAATCCAATCAATCAATGGAGGAAAA 58.667 34.615 0.00 0.00 45.82 2.29
662 693 6.070653 TCCAATCAATCAATGGAGGAAAAAGG 60.071 38.462 0.00 0.00 38.30 3.11
663 694 5.945144 ATCAATCAATGGAGGAAAAAGGG 57.055 39.130 0.00 0.00 0.00 3.95
679 712 3.547513 GGAACCCGAGGGATCCGG 61.548 72.222 19.73 3.55 45.21 5.14
688 721 4.509412 GGGATCCGGGGAGGGGAA 62.509 72.222 5.45 0.00 41.52 3.97
689 722 2.849646 GGATCCGGGGAGGGGAAG 60.850 72.222 0.00 0.00 41.52 3.46
690 723 2.040779 GATCCGGGGAGGGGAAGT 60.041 66.667 0.00 0.00 41.52 3.01
691 724 1.693103 GATCCGGGGAGGGGAAGTT 60.693 63.158 0.00 0.00 41.52 2.66
692 725 1.230182 ATCCGGGGAGGGGAAGTTT 60.230 57.895 0.00 0.00 41.52 2.66
694 727 2.535331 CCGGGGAGGGGAAGTTTGT 61.535 63.158 0.00 0.00 35.97 2.83
896 939 2.734079 GAGAGCGACAAGAGGACAAAAG 59.266 50.000 0.00 0.00 0.00 2.27
1291 1376 2.811317 GGAACTCGCTGCTGTCGG 60.811 66.667 0.00 2.64 0.00 4.79
1297 1382 4.135153 CGCTGCTGTCGGCCTACT 62.135 66.667 9.09 0.00 41.54 2.57
1305 1390 1.255667 TGTCGGCCTACTCCAAGTCC 61.256 60.000 9.09 0.00 0.00 3.85
1306 1391 1.077805 TCGGCCTACTCCAAGTCCA 59.922 57.895 0.00 0.00 0.00 4.02
1542 1627 2.357517 AAGGTGCACTCCTTCGCG 60.358 61.111 17.98 0.00 43.44 5.87
1653 1738 1.377202 GTTTGAGAGGATGCCGGCA 60.377 57.895 34.80 34.80 0.00 5.69
1761 1846 2.408022 GACCGGACCATCGTCTCG 59.592 66.667 9.46 0.00 39.15 4.04
1950 2035 4.577693 CAGGTGCATGCATACATCTTAAGT 59.422 41.667 25.64 0.00 32.87 2.24
1956 2041 3.990092 TGCATACATCTTAAGTAGCGGG 58.010 45.455 1.63 0.00 0.00 6.13
2184 2269 4.547859 GCCTGGACTGCGATGATT 57.452 55.556 0.00 0.00 0.00 2.57
2187 2272 1.742761 CCTGGACTGCGATGATTGTT 58.257 50.000 0.00 0.00 0.00 2.83
2271 2356 1.610886 GGACCAGACCCAAACAGCTAC 60.611 57.143 0.00 0.00 0.00 3.58
2298 2383 1.502231 CTGCTGTTCTTAGCGTGTGT 58.498 50.000 0.00 0.00 46.61 3.72
2452 2537 0.613777 GAGGGTGTTTGATCGGGTCT 59.386 55.000 0.00 0.00 0.00 3.85
2490 2575 2.540515 GTGACATGGACGTCGATGATT 58.459 47.619 37.08 21.75 38.84 2.57
2554 2639 1.952990 TGTTTGAAGAAATGCTCCGCA 59.047 42.857 0.00 0.00 44.86 5.69
2634 2719 0.110486 GCTTTGTGGACCAAGGGAGA 59.890 55.000 0.00 0.00 33.75 3.71
2964 3049 1.341156 CCTGGAAGCGGAGGAAGGAT 61.341 60.000 0.00 0.00 0.00 3.24
3423 3516 0.625849 TCCCAAGGAAGGAGGAATGC 59.374 55.000 0.00 0.00 0.00 3.56
3470 3570 2.124942 GCTCCAGAAGAAGGGGCG 60.125 66.667 0.00 0.00 43.86 6.13
3524 3624 1.714794 GGTATTCCAGATGGATCGCG 58.285 55.000 0.00 0.00 44.98 5.87
3547 3647 3.978193 TCGCCTGGCCCAAATGGT 61.978 61.111 14.12 0.00 36.04 3.55
3619 3719 6.492007 TTGAAATCTCTGCTTGATGACTTC 57.508 37.500 0.00 0.00 0.00 3.01
3646 3746 9.114952 CATAGCGGACAAATAGATATCTCTAGA 57.885 37.037 8.95 0.00 37.41 2.43
3693 3793 2.877043 CCAAAATGCAGGGATGCTAC 57.123 50.000 1.53 0.00 35.49 3.58
3695 3795 2.159198 CCAAAATGCAGGGATGCTACAC 60.159 50.000 1.53 0.00 35.49 2.90
3702 3802 2.394708 CAGGGATGCTACACGAATACG 58.605 52.381 0.00 0.00 45.75 3.06
3812 4531 1.425831 TGATTTCCCCTTTCCGGACAA 59.574 47.619 1.83 0.78 33.16 3.18
3820 4539 1.873591 CCTTTCCGGACAACTTCTGTG 59.126 52.381 1.83 0.00 38.84 3.66
3840 4559 2.301346 GAAGGGCAGACACATAATGGG 58.699 52.381 0.00 0.00 0.00 4.00
3845 4564 1.340991 GCAGACACATAATGGGTGGGT 60.341 52.381 0.00 0.00 40.54 4.51
3846 4565 2.883888 GCAGACACATAATGGGTGGGTT 60.884 50.000 0.00 0.00 40.54 4.11
3847 4566 3.623703 GCAGACACATAATGGGTGGGTTA 60.624 47.826 0.00 0.00 40.54 2.85
3854 4573 8.616799 ACACATAATGGGTGGGTTATTAATTT 57.383 30.769 0.00 0.00 40.54 1.82
3883 4602 9.559732 CATGAAACCTTCAATACTATCCATACA 57.440 33.333 0.00 0.00 43.95 2.29
3912 4631 5.136105 ACAAGATGCTCTTCTTTCCAAAGT 58.864 37.500 0.00 0.00 33.78 2.66
3918 4637 7.667219 AGATGCTCTTCTTTCCAAAGTTGATTA 59.333 33.333 0.00 0.00 37.31 1.75
3931 4650 7.035612 CCAAAGTTGATTATGAAAAGGCCTAC 58.964 38.462 5.16 0.95 0.00 3.18
3932 4651 7.309744 CCAAAGTTGATTATGAAAAGGCCTACA 60.310 37.037 5.16 7.77 0.00 2.74
3934 4653 7.158099 AGTTGATTATGAAAAGGCCTACAAC 57.842 36.000 5.16 11.22 35.62 3.32
3939 4658 7.870445 TGATTATGAAAAGGCCTACAACAAAAC 59.130 33.333 5.16 0.00 0.00 2.43
3941 4660 5.606348 TGAAAAGGCCTACAACAAAACAT 57.394 34.783 5.16 0.00 0.00 2.71
3943 4662 6.508777 TGAAAAGGCCTACAACAAAACATAC 58.491 36.000 5.16 0.00 0.00 2.39
3944 4663 5.462530 AAAGGCCTACAACAAAACATACC 57.537 39.130 5.16 0.00 0.00 2.73
3946 4665 4.079253 AGGCCTACAACAAAACATACCTG 58.921 43.478 1.29 0.00 0.00 4.00
3959 4678 7.117812 ACAAAACATACCTGAGATTAGTGTTCG 59.882 37.037 0.00 0.00 0.00 3.95
3965 4684 5.952033 ACCTGAGATTAGTGTTCGTTAGTC 58.048 41.667 0.00 0.00 0.00 2.59
4004 4723 6.820656 AGAGACATAGGCTTTGTTCATGTAAG 59.179 38.462 11.91 0.00 30.25 2.34
4055 4775 2.683867 TCCTTTTGTAAACACACCACCG 59.316 45.455 0.00 0.00 0.00 4.94
4059 4779 0.540454 TGTAAACACACCACCGACCA 59.460 50.000 0.00 0.00 0.00 4.02
4092 4812 4.513692 TGTTTTAACACAGGACAGGAATCG 59.486 41.667 0.00 0.00 33.17 3.34
4145 4865 1.696884 TGCCTGTCCTGTGTCATAACA 59.303 47.619 0.00 0.00 0.00 2.41
4283 5012 5.222048 GGTGGATTGGTAATAGGCCATTAGA 60.222 44.000 5.01 0.00 35.71 2.10
4290 5019 5.073008 TGGTAATAGGCCATTAGAGCAATCA 59.927 40.000 5.01 0.00 29.54 2.57
4299 5028 5.942236 GCCATTAGAGCAATCATATCCTCAA 59.058 40.000 0.00 0.00 0.00 3.02
4300 5029 6.432162 GCCATTAGAGCAATCATATCCTCAAA 59.568 38.462 0.00 0.00 0.00 2.69
4362 5091 1.003118 TGTTCTGAAGAATGGACGGGG 59.997 52.381 0.00 0.00 36.33 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.157738 GCTGCTTGGGATGTGATATCC 58.842 52.381 0.00 0.00 37.47 2.59
5 6 2.854963 TGCTGCTTGGGATGTGATATC 58.145 47.619 0.00 0.00 0.00 1.63
6 7 3.220110 CTTGCTGCTTGGGATGTGATAT 58.780 45.455 0.00 0.00 0.00 1.63
7 8 2.646930 CTTGCTGCTTGGGATGTGATA 58.353 47.619 0.00 0.00 0.00 2.15
8 9 1.471119 CTTGCTGCTTGGGATGTGAT 58.529 50.000 0.00 0.00 0.00 3.06
9 10 1.246056 GCTTGCTGCTTGGGATGTGA 61.246 55.000 0.00 0.00 38.95 3.58
10 11 1.214589 GCTTGCTGCTTGGGATGTG 59.785 57.895 0.00 0.00 38.95 3.21
11 12 0.828762 TTGCTTGCTGCTTGGGATGT 60.829 50.000 0.00 0.00 43.37 3.06
12 13 0.535335 ATTGCTTGCTGCTTGGGATG 59.465 50.000 0.00 0.00 43.37 3.51
13 14 0.822164 GATTGCTTGCTGCTTGGGAT 59.178 50.000 0.00 0.00 43.37 3.85
14 15 1.252904 GGATTGCTTGCTGCTTGGGA 61.253 55.000 0.00 0.00 43.37 4.37
15 16 1.217244 GGATTGCTTGCTGCTTGGG 59.783 57.895 0.00 0.00 43.37 4.12
16 17 1.466856 TAGGATTGCTTGCTGCTTGG 58.533 50.000 0.00 0.00 43.37 3.61
17 18 2.686405 TCATAGGATTGCTTGCTGCTTG 59.314 45.455 0.00 0.00 43.37 4.01
18 19 2.950309 CTCATAGGATTGCTTGCTGCTT 59.050 45.455 0.00 0.00 43.37 3.91
19 20 2.172082 TCTCATAGGATTGCTTGCTGCT 59.828 45.455 0.00 0.00 43.37 4.24
20 21 2.290093 GTCTCATAGGATTGCTTGCTGC 59.710 50.000 0.00 0.00 43.25 5.25
21 22 3.538591 TGTCTCATAGGATTGCTTGCTG 58.461 45.455 0.00 0.00 0.00 4.41
22 23 3.920231 TGTCTCATAGGATTGCTTGCT 57.080 42.857 0.00 0.00 0.00 3.91
23 24 4.319333 CGAATGTCTCATAGGATTGCTTGC 60.319 45.833 0.00 0.00 0.00 4.01
24 25 4.813161 ACGAATGTCTCATAGGATTGCTTG 59.187 41.667 0.00 0.00 0.00 4.01
25 26 5.028549 ACGAATGTCTCATAGGATTGCTT 57.971 39.130 0.00 0.00 0.00 3.91
26 27 4.626042 GACGAATGTCTCATAGGATTGCT 58.374 43.478 0.00 0.00 42.08 3.91
27 28 4.981389 GACGAATGTCTCATAGGATTGC 57.019 45.455 0.00 0.00 42.08 3.56
50 51 9.875691 GGGTTGATTGCTTTTCTAGAATTAAAT 57.124 29.630 5.89 4.69 0.00 1.40
51 52 9.088987 AGGGTTGATTGCTTTTCTAGAATTAAA 57.911 29.630 5.89 0.00 0.00 1.52
52 53 8.650143 AGGGTTGATTGCTTTTCTAGAATTAA 57.350 30.769 5.89 0.00 0.00 1.40
53 54 7.339466 GGAGGGTTGATTGCTTTTCTAGAATTA 59.661 37.037 5.89 0.00 0.00 1.40
54 55 6.153510 GGAGGGTTGATTGCTTTTCTAGAATT 59.846 38.462 5.89 0.00 0.00 2.17
55 56 5.654209 GGAGGGTTGATTGCTTTTCTAGAAT 59.346 40.000 5.89 0.00 0.00 2.40
56 57 5.010282 GGAGGGTTGATTGCTTTTCTAGAA 58.990 41.667 0.00 0.00 0.00 2.10
57 58 4.042809 TGGAGGGTTGATTGCTTTTCTAGA 59.957 41.667 0.00 0.00 0.00 2.43
58 59 4.335416 TGGAGGGTTGATTGCTTTTCTAG 58.665 43.478 0.00 0.00 0.00 2.43
59 60 4.380843 TGGAGGGTTGATTGCTTTTCTA 57.619 40.909 0.00 0.00 0.00 2.10
60 61 3.243359 TGGAGGGTTGATTGCTTTTCT 57.757 42.857 0.00 0.00 0.00 2.52
61 62 4.541973 AATGGAGGGTTGATTGCTTTTC 57.458 40.909 0.00 0.00 0.00 2.29
62 63 4.594491 AGAAATGGAGGGTTGATTGCTTTT 59.406 37.500 0.00 0.00 0.00 2.27
63 64 4.020839 CAGAAATGGAGGGTTGATTGCTTT 60.021 41.667 0.00 0.00 0.00 3.51
64 65 3.512724 CAGAAATGGAGGGTTGATTGCTT 59.487 43.478 0.00 0.00 0.00 3.91
65 66 3.094572 CAGAAATGGAGGGTTGATTGCT 58.905 45.455 0.00 0.00 0.00 3.91
66 67 2.827921 ACAGAAATGGAGGGTTGATTGC 59.172 45.455 0.00 0.00 0.00 3.56
67 68 4.094887 CGTACAGAAATGGAGGGTTGATTG 59.905 45.833 0.00 0.00 0.00 2.67
68 69 4.261801 CGTACAGAAATGGAGGGTTGATT 58.738 43.478 0.00 0.00 0.00 2.57
69 70 3.873910 CGTACAGAAATGGAGGGTTGAT 58.126 45.455 0.00 0.00 0.00 2.57
70 71 2.614481 GCGTACAGAAATGGAGGGTTGA 60.614 50.000 0.00 0.00 0.00 3.18
71 72 1.737793 GCGTACAGAAATGGAGGGTTG 59.262 52.381 0.00 0.00 0.00 3.77
72 73 1.349688 TGCGTACAGAAATGGAGGGTT 59.650 47.619 0.00 0.00 0.00 4.11
73 74 0.981183 TGCGTACAGAAATGGAGGGT 59.019 50.000 0.00 0.00 0.00 4.34
74 75 1.737793 GTTGCGTACAGAAATGGAGGG 59.262 52.381 0.00 0.00 0.00 4.30
75 76 1.393539 CGTTGCGTACAGAAATGGAGG 59.606 52.381 0.00 0.00 0.00 4.30
76 77 2.066262 ACGTTGCGTACAGAAATGGAG 58.934 47.619 0.00 0.00 38.73 3.86
77 78 1.795872 CACGTTGCGTACAGAAATGGA 59.204 47.619 0.00 0.00 38.32 3.41
78 79 1.724654 GCACGTTGCGTACAGAAATGG 60.725 52.381 0.00 0.00 38.32 3.16
79 80 1.591248 GCACGTTGCGTACAGAAATG 58.409 50.000 0.00 0.00 38.32 2.32
80 81 0.515564 GGCACGTTGCGTACAGAAAT 59.484 50.000 0.00 0.00 46.21 2.17
81 82 0.531090 AGGCACGTTGCGTACAGAAA 60.531 50.000 3.87 0.00 46.21 2.52
82 83 0.531090 AAGGCACGTTGCGTACAGAA 60.531 50.000 5.79 0.00 46.21 3.02
83 84 0.942410 GAAGGCACGTTGCGTACAGA 60.942 55.000 5.79 0.00 46.21 3.41
84 85 1.218875 TGAAGGCACGTTGCGTACAG 61.219 55.000 5.79 0.00 46.21 2.74
85 86 0.810426 TTGAAGGCACGTTGCGTACA 60.810 50.000 5.79 2.96 46.21 2.90
86 87 0.110823 CTTGAAGGCACGTTGCGTAC 60.111 55.000 5.79 0.00 46.21 3.67
87 88 0.249531 TCTTGAAGGCACGTTGCGTA 60.250 50.000 5.79 0.00 46.21 4.42
88 89 0.884704 ATCTTGAAGGCACGTTGCGT 60.885 50.000 0.00 0.00 46.21 5.24
89 90 0.179215 GATCTTGAAGGCACGTTGCG 60.179 55.000 0.00 0.00 46.21 4.85
90 91 0.874390 TGATCTTGAAGGCACGTTGC 59.126 50.000 0.00 0.00 44.08 4.17
91 92 3.935203 AGTATGATCTTGAAGGCACGTTG 59.065 43.478 0.00 0.00 0.00 4.10
92 93 4.081420 AGAGTATGATCTTGAAGGCACGTT 60.081 41.667 0.00 0.00 0.00 3.99
93 94 3.449018 AGAGTATGATCTTGAAGGCACGT 59.551 43.478 0.00 0.00 0.00 4.49
94 95 3.801050 CAGAGTATGATCTTGAAGGCACG 59.199 47.826 0.00 0.00 0.00 5.34
95 96 5.016051 TCAGAGTATGATCTTGAAGGCAC 57.984 43.478 0.00 0.00 31.12 5.01
96 97 5.682234 TTCAGAGTATGATCTTGAAGGCA 57.318 39.130 0.00 0.00 37.89 4.75
97 98 6.523840 AGATTCAGAGTATGATCTTGAAGGC 58.476 40.000 0.00 0.00 37.89 4.35
98 99 7.153985 GGAGATTCAGAGTATGATCTTGAAGG 58.846 42.308 0.00 0.00 37.89 3.46
99 100 7.652909 GTGGAGATTCAGAGTATGATCTTGAAG 59.347 40.741 0.00 0.00 37.89 3.02
100 101 7.344093 AGTGGAGATTCAGAGTATGATCTTGAA 59.656 37.037 0.00 0.00 37.89 2.69
101 102 6.838090 AGTGGAGATTCAGAGTATGATCTTGA 59.162 38.462 0.00 0.00 37.89 3.02
102 103 6.924612 CAGTGGAGATTCAGAGTATGATCTTG 59.075 42.308 0.00 0.00 37.89 3.02
103 104 6.838090 TCAGTGGAGATTCAGAGTATGATCTT 59.162 38.462 0.00 0.00 37.89 2.40
104 105 6.372104 TCAGTGGAGATTCAGAGTATGATCT 58.628 40.000 0.00 0.00 37.89 2.75
105 106 6.489700 TCTCAGTGGAGATTCAGAGTATGATC 59.510 42.308 0.00 0.00 45.12 2.92
106 107 6.372104 TCTCAGTGGAGATTCAGAGTATGAT 58.628 40.000 0.00 0.00 45.12 2.45
107 108 5.760131 TCTCAGTGGAGATTCAGAGTATGA 58.240 41.667 0.00 0.00 45.12 2.15
120 121 3.025322 ACTCCCTACATCTCAGTGGAG 57.975 52.381 0.00 0.00 43.93 3.86
121 122 4.816048 ATACTCCCTACATCTCAGTGGA 57.184 45.455 0.00 0.00 0.00 4.02
122 123 8.690884 CATATTATACTCCCTACATCTCAGTGG 58.309 40.741 0.00 0.00 0.00 4.00
123 124 9.467796 TCATATTATACTCCCTACATCTCAGTG 57.532 37.037 0.00 0.00 0.00 3.66
128 129 9.790297 ACCATTCATATTATACTCCCTACATCT 57.210 33.333 0.00 0.00 0.00 2.90
130 131 9.560860 TGACCATTCATATTATACTCCCTACAT 57.439 33.333 0.00 0.00 0.00 2.29
131 132 8.966155 TGACCATTCATATTATACTCCCTACA 57.034 34.615 0.00 0.00 0.00 2.74
154 155 8.664798 CATAAACGATCTACCAAGTCAATTTGA 58.335 33.333 0.00 0.00 0.00 2.69
155 156 7.910162 CCATAAACGATCTACCAAGTCAATTTG 59.090 37.037 0.00 0.00 0.00 2.32
156 157 7.610305 ACCATAAACGATCTACCAAGTCAATTT 59.390 33.333 0.00 0.00 0.00 1.82
157 158 7.110155 ACCATAAACGATCTACCAAGTCAATT 58.890 34.615 0.00 0.00 0.00 2.32
158 159 6.650120 ACCATAAACGATCTACCAAGTCAAT 58.350 36.000 0.00 0.00 0.00 2.57
159 160 6.045072 ACCATAAACGATCTACCAAGTCAA 57.955 37.500 0.00 0.00 0.00 3.18
160 161 5.670792 ACCATAAACGATCTACCAAGTCA 57.329 39.130 0.00 0.00 0.00 3.41
161 162 5.690857 GCTACCATAAACGATCTACCAAGTC 59.309 44.000 0.00 0.00 0.00 3.01
162 163 5.128171 TGCTACCATAAACGATCTACCAAGT 59.872 40.000 0.00 0.00 0.00 3.16
163 164 5.597806 TGCTACCATAAACGATCTACCAAG 58.402 41.667 0.00 0.00 0.00 3.61
164 165 5.601583 TGCTACCATAAACGATCTACCAA 57.398 39.130 0.00 0.00 0.00 3.67
165 166 5.128171 AGTTGCTACCATAAACGATCTACCA 59.872 40.000 0.00 0.00 0.00 3.25
166 167 5.598769 AGTTGCTACCATAAACGATCTACC 58.401 41.667 0.00 0.00 0.00 3.18
167 168 8.298140 AGATAGTTGCTACCATAAACGATCTAC 58.702 37.037 8.13 0.00 41.48 2.59
168 169 8.405418 AGATAGTTGCTACCATAAACGATCTA 57.595 34.615 8.13 0.00 41.48 1.98
169 170 7.291411 AGATAGTTGCTACCATAAACGATCT 57.709 36.000 5.05 5.05 39.74 2.75
170 171 7.438459 ACAAGATAGTTGCTACCATAAACGATC 59.562 37.037 0.00 0.00 36.66 3.69
171 172 7.272978 ACAAGATAGTTGCTACCATAAACGAT 58.727 34.615 0.00 0.00 0.00 3.73
172 173 6.636705 ACAAGATAGTTGCTACCATAAACGA 58.363 36.000 0.00 0.00 0.00 3.85
173 174 6.533723 TGACAAGATAGTTGCTACCATAAACG 59.466 38.462 0.00 0.00 0.00 3.60
174 175 7.464178 CGTGACAAGATAGTTGCTACCATAAAC 60.464 40.741 0.00 0.00 0.00 2.01
175 176 6.533723 CGTGACAAGATAGTTGCTACCATAAA 59.466 38.462 0.00 0.00 0.00 1.40
176 177 6.040247 CGTGACAAGATAGTTGCTACCATAA 58.960 40.000 0.00 0.00 0.00 1.90
177 178 5.358725 TCGTGACAAGATAGTTGCTACCATA 59.641 40.000 0.00 0.00 0.00 2.74
178 179 4.159693 TCGTGACAAGATAGTTGCTACCAT 59.840 41.667 0.00 0.00 0.00 3.55
179 180 3.508402 TCGTGACAAGATAGTTGCTACCA 59.492 43.478 0.00 0.00 0.00 3.25
180 181 4.106029 TCGTGACAAGATAGTTGCTACC 57.894 45.455 0.00 0.00 0.00 3.18
181 182 5.577164 ACATTCGTGACAAGATAGTTGCTAC 59.423 40.000 0.00 0.00 0.00 3.58
182 183 5.720202 ACATTCGTGACAAGATAGTTGCTA 58.280 37.500 0.00 0.00 0.00 3.49
183 184 4.569943 ACATTCGTGACAAGATAGTTGCT 58.430 39.130 0.00 0.00 0.00 3.91
184 185 4.928661 ACATTCGTGACAAGATAGTTGC 57.071 40.909 0.00 0.00 0.00 4.17
185 186 8.873830 AGATTTACATTCGTGACAAGATAGTTG 58.126 33.333 0.00 0.00 0.00 3.16
187 188 9.737427 CTAGATTTACATTCGTGACAAGATAGT 57.263 33.333 0.00 0.00 0.00 2.12
188 189 8.695284 GCTAGATTTACATTCGTGACAAGATAG 58.305 37.037 0.00 0.00 0.00 2.08
189 190 8.414003 AGCTAGATTTACATTCGTGACAAGATA 58.586 33.333 0.00 0.00 0.00 1.98
190 191 7.268586 AGCTAGATTTACATTCGTGACAAGAT 58.731 34.615 0.00 0.00 0.00 2.40
191 192 6.631016 AGCTAGATTTACATTCGTGACAAGA 58.369 36.000 0.00 0.00 0.00 3.02
192 193 6.893958 AGCTAGATTTACATTCGTGACAAG 57.106 37.500 0.00 0.00 0.00 3.16
193 194 6.475727 GCTAGCTAGATTTACATTCGTGACAA 59.524 38.462 25.15 0.00 0.00 3.18
194 195 5.977725 GCTAGCTAGATTTACATTCGTGACA 59.022 40.000 25.15 0.00 0.00 3.58
195 196 5.402867 GGCTAGCTAGATTTACATTCGTGAC 59.597 44.000 25.15 0.30 0.00 3.67
196 197 5.529791 GGCTAGCTAGATTTACATTCGTGA 58.470 41.667 25.15 0.00 0.00 4.35
197 198 4.383052 CGGCTAGCTAGATTTACATTCGTG 59.617 45.833 25.15 0.00 0.00 4.35
198 199 4.547532 CGGCTAGCTAGATTTACATTCGT 58.452 43.478 25.15 0.00 0.00 3.85
199 200 3.921021 CCGGCTAGCTAGATTTACATTCG 59.079 47.826 25.15 11.47 0.00 3.34
200 201 4.924462 GTCCGGCTAGCTAGATTTACATTC 59.076 45.833 25.15 2.87 0.00 2.67
201 202 4.589374 AGTCCGGCTAGCTAGATTTACATT 59.411 41.667 25.15 0.00 0.00 2.71
202 203 4.021894 CAGTCCGGCTAGCTAGATTTACAT 60.022 45.833 25.15 1.10 0.00 2.29
203 204 3.318275 CAGTCCGGCTAGCTAGATTTACA 59.682 47.826 25.15 0.00 0.00 2.41
204 205 3.318557 ACAGTCCGGCTAGCTAGATTTAC 59.681 47.826 25.15 15.12 0.00 2.01
205 206 3.563223 ACAGTCCGGCTAGCTAGATTTA 58.437 45.455 25.15 3.64 0.00 1.40
212 213 0.679002 TTCGTACAGTCCGGCTAGCT 60.679 55.000 15.72 0.00 0.00 3.32
241 242 1.131826 GTCGAAATGTGGAACGCGG 59.868 57.895 12.47 0.00 45.01 6.46
242 243 0.179250 CAGTCGAAATGTGGAACGCG 60.179 55.000 3.53 3.53 45.01 6.01
243 244 1.144969 TCAGTCGAAATGTGGAACGC 58.855 50.000 0.00 0.00 42.39 4.84
244 245 2.800544 ACTTCAGTCGAAATGTGGAACG 59.199 45.455 0.00 0.00 42.39 3.95
249 250 5.950883 TCCTACTACTTCAGTCGAAATGTG 58.049 41.667 0.00 0.00 38.80 3.21
257 258 4.342359 TGAGGGTTCCTACTACTTCAGTC 58.658 47.826 0.00 0.00 38.80 3.51
261 262 5.934402 TCATTGAGGGTTCCTACTACTTC 57.066 43.478 0.00 0.00 31.76 3.01
262 263 6.674419 AGAATCATTGAGGGTTCCTACTACTT 59.326 38.462 0.00 0.00 31.76 2.24
264 265 6.284459 CAGAATCATTGAGGGTTCCTACTAC 58.716 44.000 0.00 0.00 31.76 2.73
265 266 5.366768 CCAGAATCATTGAGGGTTCCTACTA 59.633 44.000 0.00 0.00 31.76 1.82
266 267 4.164988 CCAGAATCATTGAGGGTTCCTACT 59.835 45.833 0.00 0.00 31.76 2.57
267 268 4.455606 CCAGAATCATTGAGGGTTCCTAC 58.544 47.826 0.00 0.00 31.76 3.18
268 269 3.117888 GCCAGAATCATTGAGGGTTCCTA 60.118 47.826 0.00 0.00 31.76 2.94
269 270 2.357569 GCCAGAATCATTGAGGGTTCCT 60.358 50.000 0.00 0.00 36.03 3.36
270 271 2.027385 GCCAGAATCATTGAGGGTTCC 58.973 52.381 0.00 0.00 0.00 3.62
271 272 3.010200 AGCCAGAATCATTGAGGGTTC 57.990 47.619 0.00 0.00 0.00 3.62
274 275 3.294038 AGAAGCCAGAATCATTGAGGG 57.706 47.619 0.00 0.00 0.00 4.30
277 278 6.544931 CCAATCTTAGAAGCCAGAATCATTGA 59.455 38.462 0.00 0.00 0.00 2.57
297 298 1.425448 CCCTACCATCCCCTTCCAATC 59.575 57.143 0.00 0.00 0.00 2.67
299 300 0.626277 CCCCTACCATCCCCTTCCAA 60.626 60.000 0.00 0.00 0.00 3.53
309 310 1.533711 GCACTCATGCCCCTACCAT 59.466 57.895 0.00 0.00 46.97 3.55
321 322 1.668793 CAGGCGTGTCATGCACTCA 60.669 57.895 18.54 0.00 45.57 3.41
323 324 2.359107 CCAGGCGTGTCATGCACT 60.359 61.111 18.54 10.22 45.57 4.40
329 330 1.444119 GCTTTGTTCCAGGCGTGTCA 61.444 55.000 5.57 0.00 0.00 3.58
335 336 2.298729 TGGTAATTGCTTTGTTCCAGGC 59.701 45.455 0.00 0.00 0.00 4.85
336 337 4.806640 ATGGTAATTGCTTTGTTCCAGG 57.193 40.909 0.00 0.00 0.00 4.45
338 339 4.590647 TCCAATGGTAATTGCTTTGTTCCA 59.409 37.500 0.00 0.00 41.66 3.53
342 343 8.998377 GTTAATTTCCAATGGTAATTGCTTTGT 58.002 29.630 21.98 2.04 41.66 2.83
343 344 8.997323 TGTTAATTTCCAATGGTAATTGCTTTG 58.003 29.630 21.98 0.00 41.66 2.77
344 345 8.998377 GTGTTAATTTCCAATGGTAATTGCTTT 58.002 29.630 21.98 3.98 41.66 3.51
345 346 8.374743 AGTGTTAATTTCCAATGGTAATTGCTT 58.625 29.630 21.98 4.29 41.66 3.91
352 353 5.329399 AGGCAGTGTTAATTTCCAATGGTA 58.671 37.500 0.00 0.00 0.00 3.25
354 355 4.381932 GGAGGCAGTGTTAATTTCCAATGG 60.382 45.833 0.00 0.00 0.00 3.16
367 368 2.930562 GGGACTGGGAGGCAGTGT 60.931 66.667 0.00 0.00 32.33 3.55
369 370 2.608988 CTGGGACTGGGAGGCAGT 60.609 66.667 0.00 0.00 35.30 4.40
370 371 4.106925 GCTGGGACTGGGAGGCAG 62.107 72.222 0.00 0.00 0.00 4.85
378 399 1.694696 GATTAGTAGGGGCTGGGACTG 59.305 57.143 0.00 0.00 0.00 3.51
424 445 1.002430 TGCTCAGCTTTTCCGATGAGT 59.998 47.619 0.00 0.00 46.27 3.41
426 447 1.270785 TGTGCTCAGCTTTTCCGATGA 60.271 47.619 0.00 0.00 0.00 2.92
427 448 1.159285 TGTGCTCAGCTTTTCCGATG 58.841 50.000 0.00 0.00 0.00 3.84
431 452 3.572584 CAAGAATGTGCTCAGCTTTTCC 58.427 45.455 0.00 0.00 0.00 3.13
435 456 1.540267 CTGCAAGAATGTGCTCAGCTT 59.460 47.619 0.00 0.00 45.17 3.74
436 457 1.166129 CTGCAAGAATGTGCTCAGCT 58.834 50.000 0.00 0.00 45.17 4.24
437 458 0.170561 CCTGCAAGAATGTGCTCAGC 59.829 55.000 0.00 0.00 45.17 4.26
438 459 0.170561 GCCTGCAAGAATGTGCTCAG 59.829 55.000 0.00 0.00 45.17 3.35
439 460 0.537828 TGCCTGCAAGAATGTGCTCA 60.538 50.000 0.00 0.00 45.17 4.26
440 461 0.815734 ATGCCTGCAAGAATGTGCTC 59.184 50.000 0.00 0.00 45.17 4.26
580 607 0.681243 GGGGACTGACTGATTTGGGC 60.681 60.000 0.00 0.00 0.00 5.36
618 649 3.388676 TGGATTGGATTGGATTGGATTGC 59.611 43.478 0.00 0.00 0.00 3.56
619 650 5.617528 TTGGATTGGATTGGATTGGATTG 57.382 39.130 0.00 0.00 0.00 2.67
620 651 5.906495 TGATTGGATTGGATTGGATTGGATT 59.094 36.000 0.00 0.00 0.00 3.01
621 652 5.469579 TGATTGGATTGGATTGGATTGGAT 58.530 37.500 0.00 0.00 0.00 3.41
622 653 4.881361 TGATTGGATTGGATTGGATTGGA 58.119 39.130 0.00 0.00 0.00 3.53
623 654 5.617528 TTGATTGGATTGGATTGGATTGG 57.382 39.130 0.00 0.00 0.00 3.16
624 655 6.822442 TGATTGATTGGATTGGATTGGATTG 58.178 36.000 0.00 0.00 0.00 2.67
625 656 7.440505 TTGATTGATTGGATTGGATTGGATT 57.559 32.000 0.00 0.00 0.00 3.01
626 657 7.450074 CATTGATTGATTGGATTGGATTGGAT 58.550 34.615 0.00 0.00 0.00 3.41
627 658 6.183361 CCATTGATTGATTGGATTGGATTGGA 60.183 38.462 0.00 0.00 31.94 3.53
628 659 5.995282 CCATTGATTGATTGGATTGGATTGG 59.005 40.000 0.00 0.00 31.94 3.16
629 660 6.822442 TCCATTGATTGATTGGATTGGATTG 58.178 36.000 0.00 0.00 34.65 2.67
630 661 6.042781 CCTCCATTGATTGATTGGATTGGATT 59.957 38.462 0.00 0.00 38.79 3.01
631 662 5.542635 CCTCCATTGATTGATTGGATTGGAT 59.457 40.000 0.00 0.00 38.79 3.41
632 663 4.897076 CCTCCATTGATTGATTGGATTGGA 59.103 41.667 0.00 0.00 38.79 3.53
656 687 1.005569 GATCCCTCGGGTTCCCTTTTT 59.994 52.381 6.31 0.00 36.47 1.94
658 689 1.279749 GGATCCCTCGGGTTCCCTTT 61.280 60.000 17.84 0.00 44.47 3.11
659 690 1.693103 GGATCCCTCGGGTTCCCTT 60.693 63.158 17.84 0.00 44.47 3.95
662 693 3.547513 CCGGATCCCTCGGGTTCC 61.548 72.222 18.42 18.42 45.92 3.62
673 706 1.279749 AAACTTCCCCTCCCCGGATC 61.280 60.000 0.73 0.00 33.16 3.36
675 708 2.208932 AAACTTCCCCTCCCCGGA 59.791 61.111 0.73 0.00 33.16 5.14
679 712 0.178961 AAGCACAAACTTCCCCTCCC 60.179 55.000 0.00 0.00 0.00 4.30
896 939 0.951040 AACTGCTAGCTCGCCAACAC 60.951 55.000 17.23 0.00 0.00 3.32
954 997 0.892063 GCCCACCGGATTAGCAAAAA 59.108 50.000 9.46 0.00 0.00 1.94
984 1027 0.373716 GCATGTCGCGGGAAAGTTAG 59.626 55.000 6.13 0.00 0.00 2.34
1272 1357 2.375766 CGACAGCAGCGAGTTCCAC 61.376 63.158 0.00 0.00 0.00 4.02
1291 1376 1.222113 GGCTGGACTTGGAGTAGGC 59.778 63.158 0.00 0.00 0.00 3.93
1297 1382 4.020617 CAGGCGGCTGGACTTGGA 62.021 66.667 30.03 0.00 0.00 3.53
1526 1611 4.379243 CCGCGAAGGAGTGCACCT 62.379 66.667 14.63 0.51 45.00 4.00
1542 1627 4.785453 CCCAGGCCGAGCTTGACC 62.785 72.222 1.22 0.00 37.87 4.02
1653 1738 4.406173 CAGCTCGACACGCTCCGT 62.406 66.667 0.00 0.00 42.36 4.69
1761 1846 2.726691 CGTGATGACCGCGTTCCAC 61.727 63.158 4.92 4.07 43.27 4.02
1840 1925 1.402968 CGGCACCATGGAAGAAGAATG 59.597 52.381 21.47 4.35 0.00 2.67
1909 1994 0.250684 TGCTTTCCGATGCTCACCAA 60.251 50.000 0.00 0.00 0.00 3.67
2184 2269 2.025981 ACCATTCTGCTCATAGCCAACA 60.026 45.455 0.00 0.00 41.51 3.33
2187 2272 3.199727 TGTAACCATTCTGCTCATAGCCA 59.800 43.478 0.00 0.00 41.51 4.75
2313 2398 0.037326 TCTGCTTGCCGTAGTCAAGG 60.037 55.000 5.10 0.00 44.43 3.61
2340 2425 1.022735 GCAGTGATCTGATGGCCTTG 58.977 55.000 3.32 0.00 43.76 3.61
2385 2470 0.459411 CGTACATGGTGACGATGGCA 60.459 55.000 12.16 0.00 41.60 4.92
2430 2515 0.328258 CCCGATCAAACACCCTCCTT 59.672 55.000 0.00 0.00 0.00 3.36
2490 2575 3.626996 ATGCTGCGCCAAGGCTACA 62.627 57.895 4.18 6.52 39.32 2.74
2530 2615 2.560105 GGAGCATTTCTTCAAACAGGCT 59.440 45.455 0.00 0.00 32.35 4.58
2634 2719 3.801698 CTGCATCTGCTGGTAGTACATT 58.198 45.455 2.06 0.00 42.66 2.71
2964 3049 1.971357 GTCTCTTTCCTCACACCTCCA 59.029 52.381 0.00 0.00 0.00 3.86
3423 3516 4.935702 TCTGCAAGAATGAACCAACAAAG 58.064 39.130 0.00 0.00 42.31 2.77
3470 3570 5.290493 TGACATGTATGAACCATAGACCC 57.710 43.478 0.00 0.00 0.00 4.46
3524 3624 3.842925 TTGGGCCAGGCGACTTGTC 62.843 63.158 6.23 0.00 40.21 3.18
3547 3647 0.320050 GGCAAAATTCAGCCGGGAAA 59.680 50.000 2.18 0.00 41.70 3.13
3569 3669 4.734854 CCACTTGACGAGTTCACAATTTTG 59.265 41.667 0.00 0.00 36.10 2.44
3577 3677 3.138304 CAAATCCCACTTGACGAGTTCA 58.862 45.455 0.00 0.00 36.10 3.18
3619 3719 7.106439 AGAGATATCTATTTGTCCGCTATGG 57.894 40.000 4.89 0.00 40.09 2.74
3665 3765 2.181975 CCTGCATTTTGGGATCAAGGT 58.818 47.619 0.00 0.00 33.98 3.50
3693 3793 8.455598 AATGGGTTTAAATTTTCGTATTCGTG 57.544 30.769 0.00 0.00 38.33 4.35
3695 3795 8.917655 ACAAATGGGTTTAAATTTTCGTATTCG 58.082 29.630 0.00 0.00 38.55 3.34
3702 3802 8.147704 TGAGGAGACAAATGGGTTTAAATTTTC 58.852 33.333 0.00 0.00 0.00 2.29
3746 3846 5.755861 GCCTATTCATGAGAACCTCTGTAAC 59.244 44.000 0.00 0.00 36.39 2.50
3791 4510 1.638589 TGTCCGGAAAGGGGAAATCAT 59.361 47.619 5.23 0.00 41.52 2.45
3812 4531 1.131638 TGTCTGCCCTTCACAGAAGT 58.868 50.000 6.08 0.00 45.32 3.01
3820 4539 2.301346 CCCATTATGTGTCTGCCCTTC 58.699 52.381 0.00 0.00 0.00 3.46
3873 4592 8.218338 AGCATCTTGTTTTCTTGTATGGATAG 57.782 34.615 0.00 0.00 0.00 2.08
3912 4631 7.531857 TTGTTGTAGGCCTTTTCATAATCAA 57.468 32.000 12.58 8.92 0.00 2.57
3918 4637 5.606348 TGTTTTGTTGTAGGCCTTTTCAT 57.394 34.783 12.58 0.00 0.00 2.57
3931 4650 8.099364 ACACTAATCTCAGGTATGTTTTGTTG 57.901 34.615 0.00 0.00 0.00 3.33
3932 4651 8.691661 AACACTAATCTCAGGTATGTTTTGTT 57.308 30.769 0.00 0.00 0.00 2.83
3934 4653 7.117812 ACGAACACTAATCTCAGGTATGTTTTG 59.882 37.037 0.00 0.00 0.00 2.44
3939 4658 7.481642 ACTAACGAACACTAATCTCAGGTATG 58.518 38.462 0.00 0.00 0.00 2.39
3941 4660 6.883217 AGACTAACGAACACTAATCTCAGGTA 59.117 38.462 0.00 0.00 0.00 3.08
3943 4662 6.197364 AGACTAACGAACACTAATCTCAGG 57.803 41.667 0.00 0.00 0.00 3.86
3944 4663 6.127980 TGGAGACTAACGAACACTAATCTCAG 60.128 42.308 0.00 0.00 34.35 3.35
3946 4665 6.093771 TCTGGAGACTAACGAACACTAATCTC 59.906 42.308 0.00 0.00 0.00 2.75
3959 4678 7.036829 GTCTCTAAATGGTTCTGGAGACTAAC 58.963 42.308 11.96 0.00 43.35 2.34
3965 4684 6.520272 CCTATGTCTCTAAATGGTTCTGGAG 58.480 44.000 0.00 0.00 0.00 3.86
4004 4723 4.339814 TGGTTTGGGTGTACAAAATCTCAC 59.660 41.667 0.00 0.00 41.53 3.51
4145 4865 3.589288 AGAACTAGGAATCACCAGGCTTT 59.411 43.478 0.00 0.00 42.04 3.51
4220 4941 3.389329 TGTGTTTTTGCCATTACCCACAT 59.611 39.130 0.00 0.00 0.00 3.21
4237 4958 4.202346 CCAATCTTCCCAAAACCATGTGTT 60.202 41.667 0.00 0.00 39.43 3.32
4283 5012 8.105197 TGCTATACATTTGAGGATATGATTGCT 58.895 33.333 0.00 0.00 0.00 3.91
4328 5057 3.286353 TCAGAACATCTGCAACACCAAA 58.714 40.909 2.48 0.00 43.95 3.28
4362 5091 8.135529 ACACAAGGTTCTTCTAAATTTAACAGC 58.864 33.333 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.