Multiple sequence alignment - TraesCS5B01G413300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G413300 chr5B 100.000 5364 0 0 1 5364 588401489 588396126 0.000000e+00 9906
1 TraesCS5B01G413300 chr5D 93.233 1788 86 23 3589 5364 480346067 480344303 0.000000e+00 2599
2 TraesCS5B01G413300 chr5D 92.317 1614 73 26 1927 3507 480347661 480346066 0.000000e+00 2246
3 TraesCS5B01G413300 chr5D 90.612 1406 77 30 219 1613 480349040 480347679 0.000000e+00 1814
4 TraesCS5B01G413300 chr5D 93.939 99 6 0 3493 3591 376305305 376305403 3.350000e-32 150
5 TraesCS5B01G413300 chr5A 92.127 1791 105 25 3589 5364 598818501 598816732 0.000000e+00 2494
6 TraesCS5B01G413300 chr5A 93.304 1374 65 17 2150 3507 598819862 598818500 0.000000e+00 2002
7 TraesCS5B01G413300 chr5A 90.039 1024 59 14 542 1559 598822632 598821646 0.000000e+00 1286
8 TraesCS5B01G413300 chr5A 87.347 245 11 11 1927 2159 598821426 598821190 4.120000e-66 263
9 TraesCS5B01G413300 chr5A 82.918 281 22 8 6 261 598822955 598822676 4.180000e-56 230
10 TraesCS5B01G413300 chr5A 84.314 204 13 6 1553 1752 598821610 598821422 1.190000e-41 182
11 TraesCS5B01G413300 chr1A 97.464 276 7 0 1284 1559 45842268 45842543 6.290000e-129 472
12 TraesCS5B01G413300 chr1A 88.889 198 10 6 459 654 45841539 45841726 3.230000e-57 233
13 TraesCS5B01G413300 chr1A 94.845 97 5 0 3500 3596 584994028 584993932 9.310000e-33 152
14 TraesCS5B01G413300 chr1A 98.413 63 1 0 1193 1255 45841841 45841903 1.580000e-20 111
15 TraesCS5B01G413300 chr3A 96.386 249 8 1 1193 1440 158185611 158185363 5.000000e-110 409
16 TraesCS5B01G413300 chr3A 89.825 285 16 7 459 743 158197691 158197420 2.380000e-93 353
17 TraesCS5B01G413300 chr3A 95.789 95 3 1 3505 3598 160673030 160672936 9.310000e-33 152
18 TraesCS5B01G413300 chr3A 94.444 90 5 0 1009 1098 158185749 158185660 7.240000e-29 139
19 TraesCS5B01G413300 chr3B 94.949 99 3 2 3506 3602 107157958 107158056 2.590000e-33 154
20 TraesCS5B01G413300 chr7B 94.845 97 3 2 3506 3601 476201126 476201221 3.350000e-32 150
21 TraesCS5B01G413300 chr6D 94.000 100 4 2 3505 3602 255817378 255817279 3.350000e-32 150
22 TraesCS5B01G413300 chr4D 93.939 99 5 1 3505 3602 371601212 371601310 1.200000e-31 148
23 TraesCS5B01G413300 chr2B 88.889 126 6 7 3491 3613 7641722 7641602 1.200000e-31 148
24 TraesCS5B01G413300 chr4A 88.095 126 12 3 3499 3622 684920491 684920367 4.330000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G413300 chr5B 588396126 588401489 5363 True 9906.000000 9906 100.0000 1 5364 1 chr5B.!!$R1 5363
1 TraesCS5B01G413300 chr5D 480344303 480349040 4737 True 2219.666667 2599 92.0540 219 5364 3 chr5D.!!$R1 5145
2 TraesCS5B01G413300 chr5A 598816732 598822955 6223 True 1076.166667 2494 88.3415 6 5364 6 chr5A.!!$R1 5358
3 TraesCS5B01G413300 chr1A 45841539 45842543 1004 False 272.000000 472 94.9220 459 1559 3 chr1A.!!$F1 1100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 538 1.153823 GGTCGCACGCTCATACACT 60.154 57.895 0.00 0.0 0.00 3.55 F
1646 2074 0.248843 TGCATGCATCGTACACAGGA 59.751 50.000 18.46 0.0 0.00 3.86 F
1749 2177 0.249911 GGTCTGGTTCGTGCTTCAGT 60.250 55.000 0.00 0.0 0.00 3.41 F
3003 4790 1.065251 GCAAGAGCAAAGCTATCCAGC 59.935 52.381 0.00 0.0 44.04 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 2320 1.138568 TCCCGTTACAGTTGGGGAAA 58.861 50.0 3.97 0.0 45.53 3.13 R
3571 5363 0.107017 CTACTCCCTCCGTCCCGTAA 60.107 60.0 0.00 0.0 0.00 3.18 R
3576 5368 0.831307 AAATGCTACTCCCTCCGTCC 59.169 55.0 0.00 0.0 0.00 4.79 R
4929 6731 0.183492 TGTTTGCCTCCAGTCTTGCT 59.817 50.0 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.869429 AGTGATTCCATTTGTTTCAGAAATGTC 59.131 33.333 0.00 0.00 38.58 3.06
70 72 8.243961 TCATTATTCCAGAAAAGTGGTTTCAA 57.756 30.769 2.00 0.00 46.98 2.69
73 75 8.754991 TTATTCCAGAAAAGTGGTTTCAACTA 57.245 30.769 2.00 0.00 46.98 2.24
74 76 7.839680 ATTCCAGAAAAGTGGTTTCAACTAT 57.160 32.000 2.00 0.00 46.98 2.12
75 77 7.654022 TTCCAGAAAAGTGGTTTCAACTATT 57.346 32.000 2.00 0.00 46.98 1.73
76 78 7.654022 TCCAGAAAAGTGGTTTCAACTATTT 57.346 32.000 2.00 0.00 46.98 1.40
77 79 8.073467 TCCAGAAAAGTGGTTTCAACTATTTT 57.927 30.769 2.00 0.00 46.98 1.82
79 81 9.463443 CCAGAAAAGTGGTTTCAACTATTTTAG 57.537 33.333 2.00 0.00 46.98 1.85
113 139 8.892723 TCAATATTTCAGAAATATCGCAGTGTT 58.107 29.630 23.20 8.10 41.86 3.32
121 147 9.737427 TCAGAAATATCGCAGTGTTTTTAAAAA 57.263 25.926 9.31 9.31 0.00 1.94
122 148 9.993881 CAGAAATATCGCAGTGTTTTTAAAAAG 57.006 29.630 13.58 3.74 0.00 2.27
169 195 3.498082 ACGTTGCTTCAAACAAGTGAAC 58.502 40.909 0.00 0.00 33.92 3.18
170 196 3.057876 ACGTTGCTTCAAACAAGTGAACA 60.058 39.130 0.00 0.00 33.92 3.18
176 202 4.414852 CTTCAAACAAGTGAACACACCTG 58.585 43.478 7.68 0.00 33.92 4.00
177 203 3.417101 TCAAACAAGTGAACACACCTGT 58.583 40.909 7.68 0.00 39.78 4.00
178 204 3.438781 TCAAACAAGTGAACACACCTGTC 59.561 43.478 7.68 0.00 37.96 3.51
192 218 3.517901 ACACCTGTCCCGAGATATTTCAA 59.482 43.478 0.00 0.00 0.00 2.69
261 287 8.450578 ACCATTTCAGCGAGAATTCATTATTA 57.549 30.769 8.44 0.00 35.83 0.98
262 288 9.071276 ACCATTTCAGCGAGAATTCATTATTAT 57.929 29.630 8.44 0.00 35.83 1.28
263 289 9.903682 CCATTTCAGCGAGAATTCATTATTATT 57.096 29.630 8.44 0.00 35.83 1.40
294 325 7.004555 AGTGGTCACAACTATTTCAGACATA 57.995 36.000 3.82 0.00 0.00 2.29
326 358 7.861176 TTTTTCGGAAAGGTTCATTATTTCG 57.139 32.000 3.09 0.00 34.47 3.46
379 411 8.591312 CACTTCGTTATTCACAAAATTGTTGTT 58.409 29.630 0.00 0.00 39.91 2.83
398 430 7.572759 TGTTGTTTCGACTTCATTATCTCAAC 58.427 34.615 0.00 0.00 0.00 3.18
402 434 8.616942 TGTTTCGACTTCATTATCTCAACAAAA 58.383 29.630 0.00 0.00 0.00 2.44
405 437 8.018677 TCGACTTCATTATCTCAACAAAACTC 57.981 34.615 0.00 0.00 0.00 3.01
406 438 7.655732 TCGACTTCATTATCTCAACAAAACTCA 59.344 33.333 0.00 0.00 0.00 3.41
501 533 4.377708 TGCTGGTCGCACGCTCAT 62.378 61.111 0.00 0.00 45.47 2.90
502 534 2.202743 GCTGGTCGCACGCTCATA 60.203 61.111 0.00 0.00 38.92 2.15
503 535 2.517450 GCTGGTCGCACGCTCATAC 61.517 63.158 0.00 0.00 38.92 2.39
504 536 1.153842 CTGGTCGCACGCTCATACA 60.154 57.895 0.00 0.00 0.00 2.29
505 537 1.413767 CTGGTCGCACGCTCATACAC 61.414 60.000 0.00 0.00 0.00 2.90
506 538 1.153823 GGTCGCACGCTCATACACT 60.154 57.895 0.00 0.00 0.00 3.55
507 539 1.413767 GGTCGCACGCTCATACACTG 61.414 60.000 0.00 0.00 0.00 3.66
525 557 4.081030 CACTCGCGCCACAGCTTG 62.081 66.667 0.00 0.00 36.60 4.01
552 584 3.469970 TCCTCGGTGGCGATGCAT 61.470 61.111 0.00 0.00 35.26 3.96
554 586 1.227527 CCTCGGTGGCGATGCATAA 60.228 57.895 0.00 0.00 0.00 1.90
679 711 3.056465 GCTCCACTCGCCTAGCTATTAAT 60.056 47.826 0.00 0.00 32.18 1.40
817 853 2.337170 CACCGTACGCAGGTCACA 59.663 61.111 10.49 0.00 40.59 3.58
818 854 1.733041 CACCGTACGCAGGTCACAG 60.733 63.158 10.49 0.00 40.59 3.66
1143 1186 3.362262 TCGTCCAACGAGGGTGAG 58.638 61.111 0.00 0.00 46.73 3.51
1144 1187 2.261671 CGTCCAACGAGGGTGAGG 59.738 66.667 0.00 0.00 46.05 3.86
1145 1188 2.663196 GTCCAACGAGGGTGAGGG 59.337 66.667 0.00 0.00 38.24 4.30
1146 1189 2.203182 TCCAACGAGGGTGAGGGT 59.797 61.111 0.00 0.00 38.24 4.34
1176 1222 4.166011 GGCGTCAATGGCGAGCAC 62.166 66.667 12.84 0.00 0.00 4.40
1586 2013 3.550561 TCGTGAAAATGTGTTGCGAATC 58.449 40.909 0.00 0.00 0.00 2.52
1595 2023 7.721286 AAATGTGTTGCGAATCCAAATTTTA 57.279 28.000 0.00 0.00 0.00 1.52
1620 2048 6.545504 AATGCATCTTCGTATTACATGGAC 57.454 37.500 0.00 0.00 0.00 4.02
1624 2052 4.316205 TCTTCGTATTACATGGACGCAT 57.684 40.909 0.00 0.00 36.54 4.73
1645 2073 0.654160 CTGCATGCATCGTACACAGG 59.346 55.000 22.97 0.79 0.00 4.00
1646 2074 0.248843 TGCATGCATCGTACACAGGA 59.751 50.000 18.46 0.00 0.00 3.86
1648 2076 1.528586 GCATGCATCGTACACAGGATC 59.471 52.381 14.21 0.00 0.00 3.36
1649 2077 2.825205 CATGCATCGTACACAGGATCA 58.175 47.619 0.00 0.00 0.00 2.92
1650 2078 3.396560 CATGCATCGTACACAGGATCAT 58.603 45.455 0.00 0.00 0.00 2.45
1651 2079 2.825205 TGCATCGTACACAGGATCATG 58.175 47.619 5.68 5.68 0.00 3.07
1652 2080 1.528586 GCATCGTACACAGGATCATGC 59.471 52.381 7.40 0.05 0.00 4.06
1653 2081 1.788886 CATCGTACACAGGATCATGCG 59.211 52.381 7.40 0.00 0.00 4.73
1654 2082 0.815095 TCGTACACAGGATCATGCGT 59.185 50.000 7.40 6.78 0.00 5.24
1655 2083 1.203758 TCGTACACAGGATCATGCGTT 59.796 47.619 6.32 0.00 0.00 4.84
1656 2084 1.588404 CGTACACAGGATCATGCGTTC 59.412 52.381 6.32 0.78 0.00 3.95
1657 2085 2.735444 CGTACACAGGATCATGCGTTCT 60.735 50.000 6.32 0.00 0.00 3.01
1658 2086 1.730501 ACACAGGATCATGCGTTCTG 58.269 50.000 7.40 0.10 0.00 3.02
1659 2087 0.376152 CACAGGATCATGCGTTCTGC 59.624 55.000 7.40 0.00 46.70 4.26
1683 2111 7.008447 TGCGTACTTGTTTGTTTTACAATTGAC 59.992 33.333 13.59 0.00 38.00 3.18
1685 2113 9.705471 CGTACTTGTTTGTTTTACAATTGACTA 57.295 29.630 13.59 0.00 38.00 2.59
1747 2175 1.300620 CGGTCTGGTTCGTGCTTCA 60.301 57.895 0.00 0.00 0.00 3.02
1748 2176 1.284982 CGGTCTGGTTCGTGCTTCAG 61.285 60.000 0.00 0.00 0.00 3.02
1749 2177 0.249911 GGTCTGGTTCGTGCTTCAGT 60.250 55.000 0.00 0.00 0.00 3.41
1750 2178 1.583054 GTCTGGTTCGTGCTTCAGTT 58.417 50.000 0.00 0.00 0.00 3.16
1751 2179 1.940613 GTCTGGTTCGTGCTTCAGTTT 59.059 47.619 0.00 0.00 0.00 2.66
1752 2180 2.354821 GTCTGGTTCGTGCTTCAGTTTT 59.645 45.455 0.00 0.00 0.00 2.43
1753 2181 3.013921 TCTGGTTCGTGCTTCAGTTTTT 58.986 40.909 0.00 0.00 0.00 1.94
1754 2182 3.108144 CTGGTTCGTGCTTCAGTTTTTG 58.892 45.455 0.00 0.00 0.00 2.44
1755 2183 1.852280 GGTTCGTGCTTCAGTTTTTGC 59.148 47.619 0.00 0.00 0.00 3.68
1756 2184 2.479560 GGTTCGTGCTTCAGTTTTTGCT 60.480 45.455 0.00 0.00 0.00 3.91
1757 2185 3.179048 GTTCGTGCTTCAGTTTTTGCTT 58.821 40.909 0.00 0.00 0.00 3.91
1758 2186 3.065019 TCGTGCTTCAGTTTTTGCTTC 57.935 42.857 0.00 0.00 0.00 3.86
1759 2187 2.119457 CGTGCTTCAGTTTTTGCTTCC 58.881 47.619 0.00 0.00 0.00 3.46
1760 2188 2.473816 GTGCTTCAGTTTTTGCTTCCC 58.526 47.619 0.00 0.00 0.00 3.97
1761 2189 2.106566 TGCTTCAGTTTTTGCTTCCCA 58.893 42.857 0.00 0.00 0.00 4.37
1762 2190 2.101249 TGCTTCAGTTTTTGCTTCCCAG 59.899 45.455 0.00 0.00 0.00 4.45
1775 2203 4.298744 GCTTCCCAGCACTGATAAATTC 57.701 45.455 0.00 0.00 46.49 2.17
1776 2204 3.067320 GCTTCCCAGCACTGATAAATTCC 59.933 47.826 0.00 0.00 46.49 3.01
1777 2205 4.530875 CTTCCCAGCACTGATAAATTCCT 58.469 43.478 0.00 0.00 0.00 3.36
1778 2206 4.591321 TCCCAGCACTGATAAATTCCTT 57.409 40.909 0.00 0.00 0.00 3.36
1779 2207 4.934356 TCCCAGCACTGATAAATTCCTTT 58.066 39.130 0.00 0.00 0.00 3.11
1780 2208 4.706476 TCCCAGCACTGATAAATTCCTTTG 59.294 41.667 0.00 0.00 0.00 2.77
1781 2209 4.706476 CCCAGCACTGATAAATTCCTTTGA 59.294 41.667 0.00 0.00 0.00 2.69
1782 2210 5.361857 CCCAGCACTGATAAATTCCTTTGAT 59.638 40.000 0.00 0.00 0.00 2.57
1783 2211 6.127253 CCCAGCACTGATAAATTCCTTTGATT 60.127 38.462 0.00 0.00 0.00 2.57
1784 2212 7.325694 CCAGCACTGATAAATTCCTTTGATTT 58.674 34.615 0.00 0.00 0.00 2.17
1785 2213 7.820872 CCAGCACTGATAAATTCCTTTGATTTT 59.179 33.333 0.00 0.00 0.00 1.82
1786 2214 9.211485 CAGCACTGATAAATTCCTTTGATTTTT 57.789 29.630 0.00 0.00 0.00 1.94
1813 2241 7.639945 AGTGAGAGAAAAACTGTTTATTTCCG 58.360 34.615 6.16 0.00 34.39 4.30
1814 2242 7.282450 AGTGAGAGAAAAACTGTTTATTTCCGT 59.718 33.333 6.16 0.00 34.39 4.69
1815 2243 7.586664 GTGAGAGAAAAACTGTTTATTTCCGTC 59.413 37.037 6.16 7.73 34.39 4.79
1816 2244 7.281324 TGAGAGAAAAACTGTTTATTTCCGTCA 59.719 33.333 6.16 9.81 34.39 4.35
1817 2245 7.415229 AGAGAAAAACTGTTTATTTCCGTCAC 58.585 34.615 6.16 0.00 34.39 3.67
1818 2246 7.066525 AGAGAAAAACTGTTTATTTCCGTCACA 59.933 33.333 6.16 0.00 34.39 3.58
1819 2247 7.712797 AGAAAAACTGTTTATTTCCGTCACAT 58.287 30.769 6.16 0.00 34.39 3.21
1820 2248 7.860872 AGAAAAACTGTTTATTTCCGTCACATC 59.139 33.333 6.16 0.00 34.39 3.06
1821 2249 4.921470 ACTGTTTATTTCCGTCACATCG 57.079 40.909 0.00 0.00 0.00 3.84
1822 2250 4.562082 ACTGTTTATTTCCGTCACATCGA 58.438 39.130 0.00 0.00 0.00 3.59
1823 2251 4.992319 ACTGTTTATTTCCGTCACATCGAA 59.008 37.500 0.00 0.00 0.00 3.71
1824 2252 5.107220 ACTGTTTATTTCCGTCACATCGAAC 60.107 40.000 0.00 0.00 0.00 3.95
1825 2253 4.992319 TGTTTATTTCCGTCACATCGAACT 59.008 37.500 0.00 0.00 0.00 3.01
1826 2254 5.119588 TGTTTATTTCCGTCACATCGAACTC 59.880 40.000 0.00 0.00 0.00 3.01
1827 2255 2.804697 TTTCCGTCACATCGAACTCA 57.195 45.000 0.00 0.00 0.00 3.41
1828 2256 2.804697 TTCCGTCACATCGAACTCAA 57.195 45.000 0.00 0.00 0.00 3.02
1829 2257 2.060326 TCCGTCACATCGAACTCAAC 57.940 50.000 0.00 0.00 0.00 3.18
1830 2258 1.611977 TCCGTCACATCGAACTCAACT 59.388 47.619 0.00 0.00 0.00 3.16
1831 2259 1.986378 CCGTCACATCGAACTCAACTC 59.014 52.381 0.00 0.00 0.00 3.01
1832 2260 2.607038 CCGTCACATCGAACTCAACTCA 60.607 50.000 0.00 0.00 0.00 3.41
1833 2261 3.049912 CGTCACATCGAACTCAACTCAA 58.950 45.455 0.00 0.00 0.00 3.02
1834 2262 3.675225 CGTCACATCGAACTCAACTCAAT 59.325 43.478 0.00 0.00 0.00 2.57
1835 2263 4.150627 CGTCACATCGAACTCAACTCAATT 59.849 41.667 0.00 0.00 0.00 2.32
1836 2264 5.333339 CGTCACATCGAACTCAACTCAATTT 60.333 40.000 0.00 0.00 0.00 1.82
1837 2265 6.430451 GTCACATCGAACTCAACTCAATTTT 58.570 36.000 0.00 0.00 0.00 1.82
1838 2266 6.912591 GTCACATCGAACTCAACTCAATTTTT 59.087 34.615 0.00 0.00 0.00 1.94
1862 2290 6.408858 TTTAGAGAACTAGCTTTCATTGCG 57.591 37.500 0.00 0.00 35.28 4.85
1863 2291 4.193826 AGAGAACTAGCTTTCATTGCGA 57.806 40.909 0.00 0.00 35.28 5.10
1864 2292 4.569943 AGAGAACTAGCTTTCATTGCGAA 58.430 39.130 0.00 0.00 35.28 4.70
1865 2293 4.390297 AGAGAACTAGCTTTCATTGCGAAC 59.610 41.667 0.00 0.00 31.73 3.95
1866 2294 3.123621 AGAACTAGCTTTCATTGCGAACG 59.876 43.478 0.00 0.00 31.73 3.95
1867 2295 2.683968 ACTAGCTTTCATTGCGAACGA 58.316 42.857 0.00 0.00 31.73 3.85
1868 2296 3.064207 ACTAGCTTTCATTGCGAACGAA 58.936 40.909 0.00 0.00 31.73 3.85
1869 2297 3.496884 ACTAGCTTTCATTGCGAACGAAA 59.503 39.130 0.00 0.00 31.73 3.46
1870 2298 3.559238 AGCTTTCATTGCGAACGAAAT 57.441 38.095 0.00 0.00 31.73 2.17
1871 2299 3.900941 AGCTTTCATTGCGAACGAAATT 58.099 36.364 0.00 0.00 31.73 1.82
1872 2300 4.298332 AGCTTTCATTGCGAACGAAATTT 58.702 34.783 0.00 0.00 31.73 1.82
1873 2301 4.148696 AGCTTTCATTGCGAACGAAATTTG 59.851 37.500 0.00 0.00 31.73 2.32
1874 2302 4.367716 TTTCATTGCGAACGAAATTTGC 57.632 36.364 0.00 0.00 46.69 3.68
1875 2303 3.281341 TCATTGCGAACGAAATTTGCT 57.719 38.095 0.00 0.00 46.65 3.91
1876 2304 3.637432 TCATTGCGAACGAAATTTGCTT 58.363 36.364 0.00 0.00 46.65 3.91
1877 2305 4.047822 TCATTGCGAACGAAATTTGCTTT 58.952 34.783 0.00 0.00 46.65 3.51
1878 2306 3.832643 TTGCGAACGAAATTTGCTTTG 57.167 38.095 0.00 0.00 46.65 2.77
1879 2307 2.123342 TGCGAACGAAATTTGCTTTGG 58.877 42.857 0.00 0.00 46.65 3.28
1880 2308 2.124122 GCGAACGAAATTTGCTTTGGT 58.876 42.857 0.00 0.00 43.57 3.67
1881 2309 2.538037 GCGAACGAAATTTGCTTTGGTT 59.462 40.909 0.00 0.00 45.10 3.67
1882 2310 3.000825 GCGAACGAAATTTGCTTTGGTTT 59.999 39.130 0.00 0.00 43.27 3.27
1883 2311 4.207429 GCGAACGAAATTTGCTTTGGTTTA 59.793 37.500 0.00 0.00 43.27 2.01
1884 2312 5.609483 GCGAACGAAATTTGCTTTGGTTTAG 60.609 40.000 0.00 0.44 43.27 1.85
1885 2313 5.683743 CGAACGAAATTTGCTTTGGTTTAGA 59.316 36.000 0.00 0.00 43.27 2.10
1886 2314 6.344702 CGAACGAAATTTGCTTTGGTTTAGAC 60.345 38.462 0.00 0.00 43.27 2.59
1887 2315 4.973663 ACGAAATTTGCTTTGGTTTAGACG 59.026 37.500 0.00 0.00 32.53 4.18
1888 2316 5.209240 CGAAATTTGCTTTGGTTTAGACGA 58.791 37.500 0.00 0.00 0.00 4.20
1889 2317 5.339611 CGAAATTTGCTTTGGTTTAGACGAG 59.660 40.000 0.00 0.00 0.00 4.18
1890 2318 5.767816 AATTTGCTTTGGTTTAGACGAGT 57.232 34.783 0.00 0.00 0.00 4.18
1891 2319 5.767816 ATTTGCTTTGGTTTAGACGAGTT 57.232 34.783 0.00 0.00 0.00 3.01
1892 2320 5.570234 TTTGCTTTGGTTTAGACGAGTTT 57.430 34.783 0.00 0.00 0.00 2.66
1893 2321 5.570234 TTGCTTTGGTTTAGACGAGTTTT 57.430 34.783 0.00 0.00 0.00 2.43
1894 2322 5.570234 TGCTTTGGTTTAGACGAGTTTTT 57.430 34.783 0.00 0.00 0.00 1.94
1895 2323 5.575019 TGCTTTGGTTTAGACGAGTTTTTC 58.425 37.500 0.00 0.00 0.00 2.29
1896 2324 4.974275 GCTTTGGTTTAGACGAGTTTTTCC 59.026 41.667 0.00 0.00 0.00 3.13
1897 2325 5.503662 TTTGGTTTAGACGAGTTTTTCCC 57.496 39.130 0.00 0.00 0.00 3.97
1898 2326 3.479489 TGGTTTAGACGAGTTTTTCCCC 58.521 45.455 0.00 0.00 0.00 4.81
1899 2327 3.117963 TGGTTTAGACGAGTTTTTCCCCA 60.118 43.478 0.00 0.00 0.00 4.96
1900 2328 3.884693 GGTTTAGACGAGTTTTTCCCCAA 59.115 43.478 0.00 0.00 0.00 4.12
1901 2329 4.261322 GGTTTAGACGAGTTTTTCCCCAAC 60.261 45.833 0.00 0.00 0.00 3.77
1902 2330 4.426736 TTAGACGAGTTTTTCCCCAACT 57.573 40.909 0.00 0.00 37.18 3.16
1903 2331 2.572290 AGACGAGTTTTTCCCCAACTG 58.428 47.619 0.00 0.00 34.49 3.16
1904 2332 2.092592 AGACGAGTTTTTCCCCAACTGT 60.093 45.455 0.00 0.00 34.49 3.55
1905 2333 3.135167 AGACGAGTTTTTCCCCAACTGTA 59.865 43.478 0.00 0.00 34.49 2.74
1906 2334 3.878699 GACGAGTTTTTCCCCAACTGTAA 59.121 43.478 0.00 0.00 34.49 2.41
1907 2335 3.628942 ACGAGTTTTTCCCCAACTGTAAC 59.371 43.478 0.00 0.00 34.49 2.50
1908 2336 3.303526 CGAGTTTTTCCCCAACTGTAACG 60.304 47.826 0.00 0.00 34.49 3.18
1909 2337 2.953648 AGTTTTTCCCCAACTGTAACGG 59.046 45.455 0.00 0.00 33.04 4.44
1910 2338 1.984066 TTTTCCCCAACTGTAACGGG 58.016 50.000 3.48 3.48 39.92 5.28
1911 2339 1.138568 TTTCCCCAACTGTAACGGGA 58.861 50.000 10.56 8.08 43.21 5.14
1912 2340 1.364269 TTCCCCAACTGTAACGGGAT 58.636 50.000 10.56 0.00 44.11 3.85
1913 2341 2.250921 TCCCCAACTGTAACGGGATA 57.749 50.000 10.56 0.00 43.21 2.59
1914 2342 2.766736 TCCCCAACTGTAACGGGATAT 58.233 47.619 10.56 0.00 43.21 1.63
1915 2343 3.116959 TCCCCAACTGTAACGGGATATT 58.883 45.455 10.56 0.00 43.21 1.28
1916 2344 3.524380 TCCCCAACTGTAACGGGATATTT 59.476 43.478 10.56 0.00 43.21 1.40
1917 2345 4.018233 TCCCCAACTGTAACGGGATATTTT 60.018 41.667 10.56 0.00 43.21 1.82
1918 2346 4.097286 CCCCAACTGTAACGGGATATTTTG 59.903 45.833 10.56 0.00 43.21 2.44
1919 2347 4.703093 CCCAACTGTAACGGGATATTTTGT 59.297 41.667 4.29 0.00 43.21 2.83
1920 2348 5.184287 CCCAACTGTAACGGGATATTTTGTT 59.816 40.000 4.29 0.00 43.21 2.83
1921 2349 6.294843 CCCAACTGTAACGGGATATTTTGTTT 60.295 38.462 4.29 0.00 43.21 2.83
1922 2350 6.804783 CCAACTGTAACGGGATATTTTGTTTC 59.195 38.462 0.00 0.00 0.00 2.78
1923 2351 7.364200 CAACTGTAACGGGATATTTTGTTTCA 58.636 34.615 0.00 0.00 0.00 2.69
1924 2352 7.513371 ACTGTAACGGGATATTTTGTTTCAA 57.487 32.000 0.00 0.00 0.00 2.69
1925 2353 8.117813 ACTGTAACGGGATATTTTGTTTCAAT 57.882 30.769 0.00 0.00 0.00 2.57
1962 2390 9.013229 TGATGACTAAATAGTTGCTTTGAATGT 57.987 29.630 0.00 0.00 36.50 2.71
1966 2394 9.262472 GACTAAATAGTTGCTTTGAATGTAACG 57.738 33.333 6.43 0.00 36.50 3.18
1967 2395 8.234546 ACTAAATAGTTGCTTTGAATGTAACGG 58.765 33.333 6.43 0.00 35.66 4.44
1968 2396 3.915437 AGTTGCTTTGAATGTAACGGG 57.085 42.857 6.43 0.00 35.66 5.28
1971 2399 5.250200 AGTTGCTTTGAATGTAACGGGATA 58.750 37.500 6.43 0.00 35.66 2.59
1972 2400 5.885912 AGTTGCTTTGAATGTAACGGGATAT 59.114 36.000 6.43 0.00 35.66 1.63
1973 2401 6.377146 AGTTGCTTTGAATGTAACGGGATATT 59.623 34.615 6.43 0.00 35.66 1.28
1976 2404 7.032580 TGCTTTGAATGTAACGGGATATTTTG 58.967 34.615 0.00 0.00 0.00 2.44
1977 2405 7.033185 GCTTTGAATGTAACGGGATATTTTGT 58.967 34.615 0.00 0.00 0.00 2.83
1978 2406 7.544217 GCTTTGAATGTAACGGGATATTTTGTT 59.456 33.333 0.00 0.00 0.00 2.83
1983 2411 9.581099 GAATGTAACGGGATATTTTGTTTCAAT 57.419 29.630 0.00 0.00 0.00 2.57
2054 2488 8.116136 GTGTGTGTTTCCAAAGATTTTGAAATC 58.884 33.333 8.11 8.11 43.96 2.17
2064 2498 7.922278 CCAAAGATTTTGAAATCACTTCTGTCA 59.078 33.333 16.34 0.00 45.59 3.58
2090 2524 3.179048 GGCAATTAGTTTTCATCGTGGC 58.821 45.455 0.00 0.00 0.00 5.01
2123 2558 7.012704 ACACTATGGTATCTGCAAGCTTAAATG 59.987 37.037 0.00 0.00 0.00 2.32
2184 3956 9.013229 ACAATGCAGTAGATAATTTTCAGTTCA 57.987 29.630 0.00 0.00 0.00 3.18
2227 3999 6.325919 TGGCAAACTGAAAATAGTACCAAG 57.674 37.500 0.00 0.00 30.17 3.61
2306 4078 5.243730 ACATATGCCAGCAAAAACAGTAGTT 59.756 36.000 1.58 0.00 40.40 2.24
2436 4209 9.793252 AGTTGTGAATGATTTACAGCATATTTC 57.207 29.630 16.62 0.00 0.00 2.17
2438 4211 8.291191 TGTGAATGATTTACAGCATATTTCCA 57.709 30.769 0.00 0.00 0.00 3.53
2451 4224 9.064706 ACAGCATATTTCCAAGATTCTATGAAG 57.935 33.333 0.00 0.00 0.00 3.02
2452 4225 9.064706 CAGCATATTTCCAAGATTCTATGAAGT 57.935 33.333 0.00 0.00 0.00 3.01
2589 4364 4.214119 TCACAAGAACATCAGCTAAGCAAC 59.786 41.667 0.00 0.00 0.00 4.17
2599 4374 1.337110 GCTAAGCAACGCGGCAAAAG 61.337 55.000 12.47 5.25 35.83 2.27
2605 4380 2.094752 AGCAACGCGGCAAAAGAAATAT 60.095 40.909 12.47 0.00 35.83 1.28
2617 4392 8.755018 CGGCAAAAGAAATATAGGCAAAAATAG 58.245 33.333 0.00 0.00 0.00 1.73
2638 4413 5.541098 AGCATTTAACTAAACGGTAGTGC 57.459 39.130 2.19 2.01 0.00 4.40
2673 4448 8.698973 TCATAATACCCAAACTGACTTGAAAA 57.301 30.769 0.00 0.00 0.00 2.29
2674 4449 9.308000 TCATAATACCCAAACTGACTTGAAAAT 57.692 29.630 0.00 0.00 0.00 1.82
2680 4455 6.150474 ACCCAAACTGACTTGAAAATATACGG 59.850 38.462 0.00 0.00 0.00 4.02
2684 4459 9.672086 CAAACTGACTTGAAAATATACGGAAAA 57.328 29.630 0.00 0.00 0.00 2.29
2685 4460 9.893305 AAACTGACTTGAAAATATACGGAAAAG 57.107 29.630 0.00 0.00 0.00 2.27
2686 4461 8.617290 ACTGACTTGAAAATATACGGAAAAGT 57.383 30.769 0.00 0.00 0.00 2.66
2687 4462 9.715121 ACTGACTTGAAAATATACGGAAAAGTA 57.285 29.630 0.00 0.00 0.00 2.24
2775 4562 3.214328 CCACCCTATATGTGGCAGAAAC 58.786 50.000 8.24 0.00 46.13 2.78
2806 4593 6.760770 GTGGATCACTTTTGGAAAACAATCAA 59.239 34.615 0.00 0.00 39.21 2.57
2809 4596 6.601741 TCACTTTTGGAAAACAATCAATGC 57.398 33.333 0.00 0.00 39.21 3.56
2827 4614 7.433708 TCAATGCGAAAGAAAAACTCTGATA 57.566 32.000 0.00 0.00 33.37 2.15
2897 4684 3.771577 AAAACAAGGTCCACGAGAGAT 57.228 42.857 0.00 0.00 0.00 2.75
2898 4685 2.751166 AACAAGGTCCACGAGAGATG 57.249 50.000 0.00 0.00 0.00 2.90
2913 4700 4.807834 CGAGAGATGTTATCACTGTGCATT 59.192 41.667 2.12 0.00 30.16 3.56
2919 4706 7.105588 AGATGTTATCACTGTGCATTTAGACA 58.894 34.615 2.12 1.88 0.00 3.41
2920 4707 6.480524 TGTTATCACTGTGCATTTAGACAC 57.519 37.500 2.12 0.00 37.31 3.67
3003 4790 1.065251 GCAAGAGCAAAGCTATCCAGC 59.935 52.381 0.00 0.00 44.04 4.85
3016 4803 4.897509 CTATCCAGCAATGTAGGGATGA 57.102 45.455 11.00 0.00 40.27 2.92
3034 4822 6.897413 AGGGATGAAAATTTAGTACAGGCAAT 59.103 34.615 0.00 0.00 0.00 3.56
3035 4823 7.068716 AGGGATGAAAATTTAGTACAGGCAATC 59.931 37.037 0.00 0.00 0.00 2.67
3380 5172 7.956420 TTACCGAAATTCGCTATGTATTCAT 57.044 32.000 10.24 0.00 38.82 2.57
3507 5299 6.994992 GTAGAGCTGCACAATTAAACTCTAC 58.005 40.000 10.48 10.48 44.38 2.59
3508 5300 5.799213 AGAGCTGCACAATTAAACTCTACT 58.201 37.500 1.02 0.00 31.52 2.57
3509 5301 5.872070 AGAGCTGCACAATTAAACTCTACTC 59.128 40.000 1.02 0.00 31.52 2.59
3510 5302 4.938226 AGCTGCACAATTAAACTCTACTCC 59.062 41.667 1.02 0.00 0.00 3.85
3511 5303 4.095036 GCTGCACAATTAAACTCTACTCCC 59.905 45.833 0.00 0.00 0.00 4.30
3512 5304 5.491982 CTGCACAATTAAACTCTACTCCCT 58.508 41.667 0.00 0.00 0.00 4.20
3513 5305 5.488341 TGCACAATTAAACTCTACTCCCTC 58.512 41.667 0.00 0.00 0.00 4.30
3514 5306 4.876679 GCACAATTAAACTCTACTCCCTCC 59.123 45.833 0.00 0.00 0.00 4.30
3515 5307 5.570844 GCACAATTAAACTCTACTCCCTCCA 60.571 44.000 0.00 0.00 0.00 3.86
3516 5308 6.653989 CACAATTAAACTCTACTCCCTCCAT 58.346 40.000 0.00 0.00 0.00 3.41
3517 5309 6.763610 CACAATTAAACTCTACTCCCTCCATC 59.236 42.308 0.00 0.00 0.00 3.51
3518 5310 6.126739 ACAATTAAACTCTACTCCCTCCATCC 60.127 42.308 0.00 0.00 0.00 3.51
3519 5311 2.480642 AACTCTACTCCCTCCATCCC 57.519 55.000 0.00 0.00 0.00 3.85
3520 5312 1.319947 ACTCTACTCCCTCCATCCCA 58.680 55.000 0.00 0.00 0.00 4.37
3521 5313 1.869648 ACTCTACTCCCTCCATCCCAT 59.130 52.381 0.00 0.00 0.00 4.00
3522 5314 3.072086 ACTCTACTCCCTCCATCCCATA 58.928 50.000 0.00 0.00 0.00 2.74
3523 5315 3.471306 ACTCTACTCCCTCCATCCCATAA 59.529 47.826 0.00 0.00 0.00 1.90
3524 5316 4.110426 ACTCTACTCCCTCCATCCCATAAT 59.890 45.833 0.00 0.00 0.00 1.28
3525 5317 5.318889 ACTCTACTCCCTCCATCCCATAATA 59.681 44.000 0.00 0.00 0.00 0.98
3526 5318 6.009388 ACTCTACTCCCTCCATCCCATAATAT 60.009 42.308 0.00 0.00 0.00 1.28
3527 5319 7.188454 ACTCTACTCCCTCCATCCCATAATATA 59.812 40.741 0.00 0.00 0.00 0.86
3528 5320 7.961940 TCTACTCCCTCCATCCCATAATATAA 58.038 38.462 0.00 0.00 0.00 0.98
3529 5321 8.068110 TCTACTCCCTCCATCCCATAATATAAG 58.932 40.741 0.00 0.00 0.00 1.73
3530 5322 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
3531 5323 7.263901 ACTCCCTCCATCCCATAATATAAGAA 58.736 38.462 0.00 0.00 0.00 2.52
3532 5324 7.182930 ACTCCCTCCATCCCATAATATAAGAAC 59.817 40.741 0.00 0.00 0.00 3.01
3533 5325 6.156256 TCCCTCCATCCCATAATATAAGAACG 59.844 42.308 0.00 0.00 0.00 3.95
3534 5326 6.070194 CCCTCCATCCCATAATATAAGAACGT 60.070 42.308 0.00 0.00 0.00 3.99
3535 5327 7.394816 CCTCCATCCCATAATATAAGAACGTT 58.605 38.462 0.00 0.00 0.00 3.99
3536 5328 7.883311 CCTCCATCCCATAATATAAGAACGTTT 59.117 37.037 0.46 0.00 0.00 3.60
3537 5329 9.284968 CTCCATCCCATAATATAAGAACGTTTT 57.715 33.333 0.46 0.00 0.00 2.43
3538 5330 9.635404 TCCATCCCATAATATAAGAACGTTTTT 57.365 29.630 9.22 9.22 0.00 1.94
3539 5331 9.677567 CCATCCCATAATATAAGAACGTTTTTG 57.322 33.333 13.87 0.00 0.00 2.44
3542 5334 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3543 5335 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3550 5342 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
3551 5343 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
3552 5344 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
3565 5357 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
3566 5358 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
3567 5359 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
3568 5360 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
3569 5361 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3570 5362 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3571 5363 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3576 5368 8.437742 AGTGTCAAAAACGTTCTTATATTACGG 58.562 33.333 0.00 0.00 39.45 4.02
3577 5369 7.689400 GTGTCAAAAACGTTCTTATATTACGGG 59.311 37.037 0.00 0.00 39.45 5.28
3578 5370 7.601886 TGTCAAAAACGTTCTTATATTACGGGA 59.398 33.333 0.00 0.00 39.45 5.14
3579 5371 7.899841 GTCAAAAACGTTCTTATATTACGGGAC 59.100 37.037 0.00 0.00 39.45 4.46
3654 5448 4.036734 TGCACAAACCTGATGAAGAAACTC 59.963 41.667 0.00 0.00 0.00 3.01
3670 5464 4.712337 AGAAACTCGGGAGATATGTTCACT 59.288 41.667 2.08 0.00 38.80 3.41
3695 5489 7.675962 TGTACAACACACTTTTACTTTGACT 57.324 32.000 0.00 0.00 30.04 3.41
3716 5510 7.741785 TGACTAAATAAAGGACTGACTTGGAA 58.258 34.615 0.00 0.00 0.00 3.53
3882 5676 3.947910 AAAACTCACCATGATGGCAAG 57.052 42.857 12.25 11.52 42.67 4.01
3904 5698 2.265367 TCATTGACTAGGGTTCCTGCA 58.735 47.619 0.00 0.00 34.61 4.41
3940 5734 2.637382 TGACTGGATGACCAAGCTACAA 59.363 45.455 0.00 0.00 46.32 2.41
4351 6145 3.325425 CCTCTGCTTCTCCAGATGATCAT 59.675 47.826 8.25 8.25 40.77 2.45
4352 6146 4.202377 CCTCTGCTTCTCCAGATGATCATT 60.202 45.833 10.14 0.00 40.77 2.57
4371 6165 9.120538 TGATCATTCCACTTTATAAGGCTTTAC 57.879 33.333 4.45 0.00 0.00 2.01
4403 6197 6.917477 TGGATCGCTGTTTGAAATAATTATGC 59.083 34.615 0.00 0.00 0.00 3.14
4404 6198 6.363357 GGATCGCTGTTTGAAATAATTATGCC 59.637 38.462 0.00 0.00 0.00 4.40
4410 6204 7.436376 GCTGTTTGAAATAATTATGCCTCTTCC 59.564 37.037 0.00 0.00 0.00 3.46
4434 6228 6.039159 CCTTTTCCTCTGATTATTTGGAGAGC 59.961 42.308 0.00 0.00 32.17 4.09
4470 6264 7.227873 TCAAACCCAGATGTGACTTTGTATAA 58.772 34.615 10.18 0.00 0.00 0.98
4471 6265 7.888021 TCAAACCCAGATGTGACTTTGTATAAT 59.112 33.333 10.18 0.00 0.00 1.28
4508 6302 9.195411 TGATATTTTTCACTGACAAGATTTTGC 57.805 29.630 0.00 0.00 37.85 3.68
4518 6312 6.375455 ACTGACAAGATTTTGCGGATTATCTT 59.625 34.615 7.82 7.82 37.72 2.40
4552 6346 3.119531 TGCACTTTATCAAGGATTTGCCG 60.120 43.478 0.00 0.00 43.43 5.69
4553 6347 3.734902 GCACTTTATCAAGGATTTGCCGG 60.735 47.826 0.00 0.00 43.43 6.13
4554 6348 3.443681 CACTTTATCAAGGATTTGCCGGT 59.556 43.478 1.90 0.00 43.43 5.28
4556 6350 4.157840 ACTTTATCAAGGATTTGCCGGTTC 59.842 41.667 1.90 0.00 43.43 3.62
4557 6351 2.514458 ATCAAGGATTTGCCGGTTCT 57.486 45.000 1.90 0.00 43.43 3.01
4559 6353 2.159382 TCAAGGATTTGCCGGTTCTTC 58.841 47.619 1.90 0.00 43.43 2.87
4560 6354 1.885887 CAAGGATTTGCCGGTTCTTCA 59.114 47.619 1.90 0.00 43.43 3.02
4561 6355 2.493278 CAAGGATTTGCCGGTTCTTCAT 59.507 45.455 1.90 0.00 43.43 2.57
4563 6357 2.091541 GGATTTGCCGGTTCTTCATCA 58.908 47.619 1.90 0.00 0.00 3.07
4571 6366 7.397892 TTGCCGGTTCTTCATCAATTTATAA 57.602 32.000 1.90 0.00 0.00 0.98
4598 6393 4.508461 TCCAAGCAATCACAGTTCATTG 57.492 40.909 0.00 0.00 33.77 2.82
4655 6455 2.290641 TGGTACACAAAGCGATGGGAAT 60.291 45.455 0.80 0.00 0.00 3.01
4663 6463 3.627395 AAGCGATGGGAATCACACTAA 57.373 42.857 0.00 0.00 0.00 2.24
4746 6547 8.443160 CACAAGAGATAGAAAGCATTAAACGAA 58.557 33.333 0.00 0.00 0.00 3.85
4777 6579 8.647143 AAAACACAACAGATAGAAAACATTGG 57.353 30.769 0.00 0.00 0.00 3.16
4785 6587 7.918076 ACAGATAGAAAACATTGGAGGAAGTA 58.082 34.615 0.00 0.00 0.00 2.24
4794 6596 9.747898 AAAACATTGGAGGAAGTAACATATACA 57.252 29.630 0.00 0.00 0.00 2.29
4795 6597 8.732746 AACATTGGAGGAAGTAACATATACAC 57.267 34.615 0.00 0.00 0.00 2.90
4797 6599 7.987458 ACATTGGAGGAAGTAACATATACACTG 59.013 37.037 0.00 0.00 0.00 3.66
4798 6600 7.727578 TTGGAGGAAGTAACATATACACTGA 57.272 36.000 0.00 0.00 0.00 3.41
4799 6601 7.914427 TGGAGGAAGTAACATATACACTGAT 57.086 36.000 0.00 0.00 0.00 2.90
4800 6602 7.726216 TGGAGGAAGTAACATATACACTGATG 58.274 38.462 0.00 0.00 0.00 3.07
4804 6606 8.424918 AGGAAGTAACATATACACTGATGGAAG 58.575 37.037 0.00 0.00 0.00 3.46
4805 6607 8.421784 GGAAGTAACATATACACTGATGGAAGA 58.578 37.037 0.00 0.00 0.00 2.87
4806 6608 9.817809 GAAGTAACATATACACTGATGGAAGAA 57.182 33.333 0.00 0.00 0.00 2.52
4807 6609 9.823647 AAGTAACATATACACTGATGGAAGAAG 57.176 33.333 0.00 0.00 0.00 2.85
4808 6610 7.928706 AGTAACATATACACTGATGGAAGAAGC 59.071 37.037 0.00 0.00 0.00 3.86
4809 6611 6.491714 ACATATACACTGATGGAAGAAGCT 57.508 37.500 0.00 0.00 0.00 3.74
4810 6612 6.520272 ACATATACACTGATGGAAGAAGCTC 58.480 40.000 0.00 0.00 0.00 4.09
4811 6613 6.326064 ACATATACACTGATGGAAGAAGCTCT 59.674 38.462 0.00 0.00 0.00 4.09
4812 6614 3.331478 ACACTGATGGAAGAAGCTCTG 57.669 47.619 0.00 0.00 0.00 3.35
4813 6615 2.636893 ACACTGATGGAAGAAGCTCTGT 59.363 45.455 0.00 0.00 0.00 3.41
4842 6644 8.422577 AACTCTTGTTATTTCTTTTGCCCTAT 57.577 30.769 0.00 0.00 34.15 2.57
4843 6645 8.422577 ACTCTTGTTATTTCTTTTGCCCTATT 57.577 30.769 0.00 0.00 0.00 1.73
4844 6646 9.528489 ACTCTTGTTATTTCTTTTGCCCTATTA 57.472 29.630 0.00 0.00 0.00 0.98
4871 6673 7.241042 AGGGCGAGCAATTCTATTTACTATA 57.759 36.000 0.00 0.00 0.00 1.31
4920 6722 9.965824 ATACAAACTGTATTGAACAAGAAAAGG 57.034 29.630 8.86 0.00 40.40 3.11
4921 6723 6.756542 ACAAACTGTATTGAACAAGAAAAGGC 59.243 34.615 8.86 0.00 37.74 4.35
4923 6725 5.831997 ACTGTATTGAACAAGAAAAGGCAC 58.168 37.500 0.00 0.00 37.74 5.01
4924 6726 5.594317 ACTGTATTGAACAAGAAAAGGCACT 59.406 36.000 0.00 0.00 37.95 4.40
4926 6728 5.592282 TGTATTGAACAAGAAAAGGCACTGA 59.408 36.000 0.00 0.00 34.35 3.41
4927 6729 5.796424 ATTGAACAAGAAAAGGCACTGAT 57.204 34.783 0.00 0.00 40.86 2.90
4929 6731 6.707440 TTGAACAAGAAAAGGCACTGATAA 57.293 33.333 0.00 0.00 40.86 1.75
4930 6732 6.317789 TGAACAAGAAAAGGCACTGATAAG 57.682 37.500 0.00 0.00 40.86 1.73
4931 6733 4.773323 ACAAGAAAAGGCACTGATAAGC 57.227 40.909 0.00 0.00 40.86 3.09
4937 6739 3.710209 AAGGCACTGATAAGCAAGACT 57.290 42.857 0.00 0.00 40.86 3.24
4938 6740 2.983229 AGGCACTGATAAGCAAGACTG 58.017 47.619 0.00 0.00 37.18 3.51
4946 6748 2.949177 TAAGCAAGACTGGAGGCAAA 57.051 45.000 0.00 0.00 0.00 3.68
4951 6754 2.159114 GCAAGACTGGAGGCAAACAAAA 60.159 45.455 0.00 0.00 0.00 2.44
4962 6765 3.132111 AGGCAAACAAAACCTTACCACAG 59.868 43.478 0.00 0.00 0.00 3.66
5005 6808 9.563748 AATGATTGGTTGTTCTGAAATGATTTT 57.436 25.926 0.00 0.00 0.00 1.82
5201 7004 4.705337 ACTAGCTTACGAAGACTCCAAG 57.295 45.455 0.00 0.00 0.00 3.61
5202 7005 2.371910 AGCTTACGAAGACTCCAAGC 57.628 50.000 0.00 0.00 41.47 4.01
5203 7006 1.618837 AGCTTACGAAGACTCCAAGCA 59.381 47.619 7.30 0.00 43.15 3.91
5204 7007 2.234908 AGCTTACGAAGACTCCAAGCAT 59.765 45.455 7.30 0.00 43.15 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.729116 ACATTTCTGAAACAAATGGAATCACT 58.271 30.769 4.73 0.00 42.99 3.41
96 122 9.993881 CTTTTTAAAAACACTGCGATATTTCTG 57.006 29.630 9.31 0.00 0.00 3.02
97 123 9.744468 ACTTTTTAAAAACACTGCGATATTTCT 57.256 25.926 9.31 0.00 0.00 2.52
105 131 7.670916 TGAAATCACTTTTTAAAAACACTGCG 58.329 30.769 9.31 2.04 0.00 5.18
141 167 6.573725 CACTTGTTTGAAGCAACGTAATCTAC 59.426 38.462 0.00 0.00 0.00 2.59
148 174 3.057876 TGTTCACTTGTTTGAAGCAACGT 60.058 39.130 0.00 0.00 36.15 3.99
149 175 3.300590 GTGTTCACTTGTTTGAAGCAACG 59.699 43.478 0.00 0.00 36.15 4.10
169 195 3.118775 TGAAATATCTCGGGACAGGTGTG 60.119 47.826 0.00 0.00 0.00 3.82
170 196 3.104512 TGAAATATCTCGGGACAGGTGT 58.895 45.455 0.00 0.00 0.00 4.16
263 289 9.796120 CTGAAATAGTTGTGACCACTTTTAAAA 57.204 29.630 0.00 0.00 0.00 1.52
264 290 9.179909 TCTGAAATAGTTGTGACCACTTTTAAA 57.820 29.630 0.00 0.00 0.00 1.52
265 291 8.617809 GTCTGAAATAGTTGTGACCACTTTTAA 58.382 33.333 0.00 0.00 0.00 1.52
266 292 7.771361 TGTCTGAAATAGTTGTGACCACTTTTA 59.229 33.333 0.00 0.00 0.00 1.52
306 337 6.804770 TTTCGAAATAATGAACCTTTCCGA 57.195 33.333 6.47 0.00 0.00 4.55
344 376 7.789273 TGTGAATAACGAAGTGTTCCTAAAA 57.211 32.000 0.00 0.00 45.00 1.52
350 382 8.335256 ACAATTTTGTGAATAACGAAGTGTTC 57.665 30.769 0.00 0.00 39.47 3.18
355 387 9.618410 GAAACAACAATTTTGTGAATAACGAAG 57.382 29.630 0.00 0.00 41.31 3.79
359 391 8.803799 AGTCGAAACAACAATTTTGTGAATAAC 58.196 29.630 0.00 4.05 41.31 1.89
360 392 8.918961 AGTCGAAACAACAATTTTGTGAATAA 57.081 26.923 0.00 0.00 41.31 1.40
379 411 8.378172 AGTTTTGTTGAGATAATGAAGTCGAA 57.622 30.769 0.00 0.00 0.00 3.71
436 468 0.379669 CTCTGCCATGCGAAATCACC 59.620 55.000 0.00 0.00 0.00 4.02
488 520 1.153823 AGTGTATGAGCGTGCGACC 60.154 57.895 0.00 0.00 0.00 4.79
489 521 1.991430 CAGTGTATGAGCGTGCGAC 59.009 57.895 0.00 0.00 0.00 5.19
490 522 1.805539 GCAGTGTATGAGCGTGCGA 60.806 57.895 0.00 0.00 0.00 5.10
501 533 3.984749 TGGCGCGAGTGCAGTGTA 61.985 61.111 12.10 0.00 42.97 2.90
712 746 2.029964 GGTCGGCGAAACTGTGGA 59.970 61.111 12.92 0.00 0.00 4.02
752 787 4.514577 CTGGCCGGGCTCGTAGTG 62.515 72.222 29.87 6.54 33.95 2.74
771 806 1.724581 GTGTTTTTCCGCCGCTTCG 60.725 57.895 0.00 0.00 0.00 3.79
968 1011 4.174009 GCATATATAGTGTACGTGGCCAG 58.826 47.826 5.11 2.58 0.00 4.85
969 1012 3.366577 CGCATATATAGTGTACGTGGCCA 60.367 47.826 0.00 0.00 0.00 5.36
1106 1149 4.819761 TGATCGACCAGCTGCCGC 62.820 66.667 18.14 8.83 0.00 6.53
1107 1150 2.107750 ATGATCGACCAGCTGCCG 59.892 61.111 8.66 14.02 0.00 5.69
1108 1151 1.153289 ACATGATCGACCAGCTGCC 60.153 57.895 8.66 0.79 0.00 4.85
1109 1152 2.305405 GACATGATCGACCAGCTGC 58.695 57.895 8.66 0.00 0.00 5.25
1132 1175 1.913762 CCTCACCCTCACCCTCGTT 60.914 63.158 0.00 0.00 0.00 3.85
1133 1176 2.283966 CCTCACCCTCACCCTCGT 60.284 66.667 0.00 0.00 0.00 4.18
1137 1180 2.204090 TTCCCCTCACCCTCACCC 60.204 66.667 0.00 0.00 0.00 4.61
1138 1181 2.301738 CCTTCCCCTCACCCTCACC 61.302 68.421 0.00 0.00 0.00 4.02
1139 1182 2.972819 GCCTTCCCCTCACCCTCAC 61.973 68.421 0.00 0.00 0.00 3.51
1140 1183 2.610859 GCCTTCCCCTCACCCTCA 60.611 66.667 0.00 0.00 0.00 3.86
1141 1184 3.787001 CGCCTTCCCCTCACCCTC 61.787 72.222 0.00 0.00 0.00 4.30
1217 1263 4.478371 CCGCCAGCTGCTCCATCA 62.478 66.667 8.66 0.00 38.05 3.07
1595 2023 7.417612 GTCCATGTAATACGAAGATGCATTTT 58.582 34.615 0.00 0.00 0.00 1.82
1638 2066 2.892374 CAGAACGCATGATCCTGTGTA 58.108 47.619 16.15 0.00 38.86 2.90
1652 2080 8.554200 TTGTAAAACAAACAAGTACGCAGAACG 61.554 37.037 0.00 0.00 40.83 3.95
1653 2081 6.022821 TGTAAAACAAACAAGTACGCAGAAC 58.977 36.000 0.00 0.00 0.00 3.01
1654 2082 6.179504 TGTAAAACAAACAAGTACGCAGAA 57.820 33.333 0.00 0.00 0.00 3.02
1655 2083 5.798015 TGTAAAACAAACAAGTACGCAGA 57.202 34.783 0.00 0.00 0.00 4.26
1656 2084 7.219154 TCAATTGTAAAACAAACAAGTACGCAG 59.781 33.333 5.13 0.00 41.96 5.18
1657 2085 7.008447 GTCAATTGTAAAACAAACAAGTACGCA 59.992 33.333 5.13 0.00 41.96 5.24
1658 2086 7.219344 AGTCAATTGTAAAACAAACAAGTACGC 59.781 33.333 5.13 0.00 41.96 4.42
1659 2087 8.609478 AGTCAATTGTAAAACAAACAAGTACG 57.391 30.769 5.13 0.00 41.96 3.67
1683 2111 5.390567 GCGTTTCAACCAGTGGAATAACTAG 60.391 44.000 18.40 1.91 0.00 2.57
1685 2113 3.252458 GCGTTTCAACCAGTGGAATAACT 59.748 43.478 18.40 0.00 0.00 2.24
1686 2114 3.252458 AGCGTTTCAACCAGTGGAATAAC 59.748 43.478 18.40 12.63 0.00 1.89
1753 2181 2.877097 TTTATCAGTGCTGGGAAGCA 57.123 45.000 0.00 0.00 43.22 3.91
1754 2182 3.067320 GGAATTTATCAGTGCTGGGAAGC 59.933 47.826 0.00 0.00 0.00 3.86
1755 2183 4.530875 AGGAATTTATCAGTGCTGGGAAG 58.469 43.478 0.00 0.00 0.00 3.46
1756 2184 4.591321 AGGAATTTATCAGTGCTGGGAA 57.409 40.909 0.00 0.00 0.00 3.97
1757 2185 4.591321 AAGGAATTTATCAGTGCTGGGA 57.409 40.909 0.00 0.00 0.00 4.37
1758 2186 4.706476 TCAAAGGAATTTATCAGTGCTGGG 59.294 41.667 0.00 0.00 0.00 4.45
1759 2187 5.902613 TCAAAGGAATTTATCAGTGCTGG 57.097 39.130 0.00 0.00 0.00 4.85
1760 2188 8.767478 AAAATCAAAGGAATTTATCAGTGCTG 57.233 30.769 0.00 0.00 0.00 4.41
1787 2215 8.129211 CGGAAATAAACAGTTTTTCTCTCACTT 58.871 33.333 3.25 0.00 31.57 3.16
1788 2216 7.282450 ACGGAAATAAACAGTTTTTCTCTCACT 59.718 33.333 3.25 0.00 31.57 3.41
1789 2217 7.415229 ACGGAAATAAACAGTTTTTCTCTCAC 58.585 34.615 3.25 0.00 31.57 3.51
1790 2218 7.281324 TGACGGAAATAAACAGTTTTTCTCTCA 59.719 33.333 3.25 5.50 31.57 3.27
1791 2219 7.586664 GTGACGGAAATAAACAGTTTTTCTCTC 59.413 37.037 3.25 3.32 31.57 3.20
1792 2220 7.066525 TGTGACGGAAATAAACAGTTTTTCTCT 59.933 33.333 3.25 0.00 31.57 3.10
1793 2221 7.190871 TGTGACGGAAATAAACAGTTTTTCTC 58.809 34.615 3.25 0.00 31.57 2.87
1794 2222 7.090953 TGTGACGGAAATAAACAGTTTTTCT 57.909 32.000 3.25 0.00 31.57 2.52
1795 2223 7.149192 CGATGTGACGGAAATAAACAGTTTTTC 60.149 37.037 3.25 3.00 0.00 2.29
1796 2224 6.635239 CGATGTGACGGAAATAAACAGTTTTT 59.365 34.615 3.25 0.00 0.00 1.94
1797 2225 6.017770 TCGATGTGACGGAAATAAACAGTTTT 60.018 34.615 3.25 0.00 0.00 2.43
1798 2226 5.467399 TCGATGTGACGGAAATAAACAGTTT 59.533 36.000 3.49 3.49 0.00 2.66
1799 2227 4.992319 TCGATGTGACGGAAATAAACAGTT 59.008 37.500 0.00 0.00 0.00 3.16
1800 2228 4.562082 TCGATGTGACGGAAATAAACAGT 58.438 39.130 0.00 0.00 0.00 3.55
1801 2229 5.120208 AGTTCGATGTGACGGAAATAAACAG 59.880 40.000 0.00 0.00 0.00 3.16
1802 2230 4.992319 AGTTCGATGTGACGGAAATAAACA 59.008 37.500 0.00 0.00 0.00 2.83
1803 2231 5.119588 TGAGTTCGATGTGACGGAAATAAAC 59.880 40.000 0.00 0.00 0.00 2.01
1804 2232 5.231702 TGAGTTCGATGTGACGGAAATAAA 58.768 37.500 0.00 0.00 0.00 1.40
1805 2233 4.811908 TGAGTTCGATGTGACGGAAATAA 58.188 39.130 0.00 0.00 0.00 1.40
1806 2234 4.443913 TGAGTTCGATGTGACGGAAATA 57.556 40.909 0.00 0.00 0.00 1.40
1807 2235 3.313012 TGAGTTCGATGTGACGGAAAT 57.687 42.857 0.00 0.00 0.00 2.17
1808 2236 2.798283 GTTGAGTTCGATGTGACGGAAA 59.202 45.455 0.00 0.00 0.00 3.13
1809 2237 2.035449 AGTTGAGTTCGATGTGACGGAA 59.965 45.455 0.00 0.00 0.00 4.30
1810 2238 1.611977 AGTTGAGTTCGATGTGACGGA 59.388 47.619 0.00 0.00 0.00 4.69
1811 2239 1.986378 GAGTTGAGTTCGATGTGACGG 59.014 52.381 0.00 0.00 0.00 4.79
1812 2240 2.661594 TGAGTTGAGTTCGATGTGACG 58.338 47.619 0.00 0.00 0.00 4.35
1813 2241 5.597813 AATTGAGTTGAGTTCGATGTGAC 57.402 39.130 0.00 0.00 0.00 3.67
1814 2242 6.618287 AAAATTGAGTTGAGTTCGATGTGA 57.382 33.333 0.00 0.00 0.00 3.58
1837 2265 7.172532 TCGCAATGAAAGCTAGTTCTCTAAAAA 59.827 33.333 0.00 0.00 0.00 1.94
1838 2266 6.649141 TCGCAATGAAAGCTAGTTCTCTAAAA 59.351 34.615 0.00 0.00 0.00 1.52
1839 2267 6.163476 TCGCAATGAAAGCTAGTTCTCTAAA 58.837 36.000 0.00 0.00 0.00 1.85
1840 2268 5.720202 TCGCAATGAAAGCTAGTTCTCTAA 58.280 37.500 0.00 0.00 0.00 2.10
1841 2269 5.324784 TCGCAATGAAAGCTAGTTCTCTA 57.675 39.130 0.00 0.00 0.00 2.43
1842 2270 4.193826 TCGCAATGAAAGCTAGTTCTCT 57.806 40.909 0.00 0.00 0.00 3.10
1843 2271 4.642953 GTTCGCAATGAAAGCTAGTTCTC 58.357 43.478 0.00 0.00 38.60 2.87
1844 2272 3.123621 CGTTCGCAATGAAAGCTAGTTCT 59.876 43.478 0.00 0.00 38.60 3.01
1845 2273 3.122948 TCGTTCGCAATGAAAGCTAGTTC 59.877 43.478 0.00 0.00 38.60 3.01
1846 2274 3.064207 TCGTTCGCAATGAAAGCTAGTT 58.936 40.909 0.00 0.00 38.60 2.24
1847 2275 2.683968 TCGTTCGCAATGAAAGCTAGT 58.316 42.857 0.00 0.00 38.60 2.57
1848 2276 3.722555 TTCGTTCGCAATGAAAGCTAG 57.277 42.857 0.00 0.00 38.60 3.42
1849 2277 4.678509 ATTTCGTTCGCAATGAAAGCTA 57.321 36.364 16.15 1.46 46.24 3.32
1850 2278 3.559238 ATTTCGTTCGCAATGAAAGCT 57.441 38.095 16.15 0.00 46.24 3.74
1851 2279 4.376916 CAAATTTCGTTCGCAATGAAAGC 58.623 39.130 16.15 0.00 46.24 3.51
1852 2280 4.148696 AGCAAATTTCGTTCGCAATGAAAG 59.851 37.500 16.15 8.44 46.24 2.62
1853 2281 4.047822 AGCAAATTTCGTTCGCAATGAAA 58.952 34.783 14.45 14.45 46.85 2.69
1854 2282 3.637432 AGCAAATTTCGTTCGCAATGAA 58.363 36.364 0.94 1.04 34.74 2.57
1855 2283 3.281341 AGCAAATTTCGTTCGCAATGA 57.719 38.095 0.94 0.00 0.00 2.57
1856 2284 4.135966 CAAAGCAAATTTCGTTCGCAATG 58.864 39.130 0.94 0.00 0.00 2.82
1857 2285 3.184178 CCAAAGCAAATTTCGTTCGCAAT 59.816 39.130 0.94 0.00 0.00 3.56
1858 2286 2.537625 CCAAAGCAAATTTCGTTCGCAA 59.462 40.909 0.94 0.00 0.00 4.85
1859 2287 2.123342 CCAAAGCAAATTTCGTTCGCA 58.877 42.857 0.94 0.00 0.00 5.10
1860 2288 2.124122 ACCAAAGCAAATTTCGTTCGC 58.876 42.857 0.00 0.00 0.00 4.70
1861 2289 4.770351 AAACCAAAGCAAATTTCGTTCG 57.230 36.364 0.00 0.00 31.93 3.95
1862 2290 6.344702 CGTCTAAACCAAAGCAAATTTCGTTC 60.345 38.462 0.00 0.00 31.93 3.95
1863 2291 5.457473 CGTCTAAACCAAAGCAAATTTCGTT 59.543 36.000 0.00 0.00 34.19 3.85
1864 2292 4.973663 CGTCTAAACCAAAGCAAATTTCGT 59.026 37.500 0.00 0.00 0.00 3.85
1865 2293 5.209240 TCGTCTAAACCAAAGCAAATTTCG 58.791 37.500 0.00 0.00 0.00 3.46
1866 2294 6.206498 ACTCGTCTAAACCAAAGCAAATTTC 58.794 36.000 0.00 0.00 0.00 2.17
1867 2295 6.144078 ACTCGTCTAAACCAAAGCAAATTT 57.856 33.333 0.00 0.00 0.00 1.82
1868 2296 5.767816 ACTCGTCTAAACCAAAGCAAATT 57.232 34.783 0.00 0.00 0.00 1.82
1869 2297 5.767816 AACTCGTCTAAACCAAAGCAAAT 57.232 34.783 0.00 0.00 0.00 2.32
1870 2298 5.570234 AAACTCGTCTAAACCAAAGCAAA 57.430 34.783 0.00 0.00 0.00 3.68
1871 2299 5.570234 AAAACTCGTCTAAACCAAAGCAA 57.430 34.783 0.00 0.00 0.00 3.91
1872 2300 5.449451 GGAAAAACTCGTCTAAACCAAAGCA 60.449 40.000 0.00 0.00 0.00 3.91
1873 2301 4.974275 GGAAAAACTCGTCTAAACCAAAGC 59.026 41.667 0.00 0.00 0.00 3.51
1874 2302 5.506815 GGGGAAAAACTCGTCTAAACCAAAG 60.507 44.000 0.00 0.00 0.00 2.77
1875 2303 4.338964 GGGGAAAAACTCGTCTAAACCAAA 59.661 41.667 0.00 0.00 0.00 3.28
1876 2304 3.884693 GGGGAAAAACTCGTCTAAACCAA 59.115 43.478 0.00 0.00 0.00 3.67
1877 2305 3.117963 TGGGGAAAAACTCGTCTAAACCA 60.118 43.478 0.00 0.00 0.00 3.67
1878 2306 3.479489 TGGGGAAAAACTCGTCTAAACC 58.521 45.455 0.00 0.00 0.00 3.27
1879 2307 4.577693 AGTTGGGGAAAAACTCGTCTAAAC 59.422 41.667 0.00 0.00 32.36 2.01
1880 2308 4.577283 CAGTTGGGGAAAAACTCGTCTAAA 59.423 41.667 0.00 0.00 35.70 1.85
1881 2309 4.131596 CAGTTGGGGAAAAACTCGTCTAA 58.868 43.478 0.00 0.00 35.70 2.10
1882 2310 3.135167 ACAGTTGGGGAAAAACTCGTCTA 59.865 43.478 0.00 0.00 35.70 2.59
1883 2311 2.092592 ACAGTTGGGGAAAAACTCGTCT 60.093 45.455 0.00 0.00 35.70 4.18
1884 2312 2.294979 ACAGTTGGGGAAAAACTCGTC 58.705 47.619 0.00 0.00 35.70 4.20
1885 2313 2.430248 ACAGTTGGGGAAAAACTCGT 57.570 45.000 0.00 0.00 35.70 4.18
1886 2314 3.303526 CGTTACAGTTGGGGAAAAACTCG 60.304 47.826 0.00 0.00 35.70 4.18
1887 2315 3.004002 CCGTTACAGTTGGGGAAAAACTC 59.996 47.826 0.00 0.00 35.70 3.01
1888 2316 2.953648 CCGTTACAGTTGGGGAAAAACT 59.046 45.455 0.00 0.00 38.40 2.66
1889 2317 2.034939 CCCGTTACAGTTGGGGAAAAAC 59.965 50.000 0.00 0.00 42.59 2.43
1890 2318 2.091994 TCCCGTTACAGTTGGGGAAAAA 60.092 45.455 3.97 0.00 45.53 1.94
1891 2319 1.493871 TCCCGTTACAGTTGGGGAAAA 59.506 47.619 3.97 0.00 45.53 2.29
1892 2320 1.138568 TCCCGTTACAGTTGGGGAAA 58.861 50.000 3.97 0.00 45.53 3.13
1893 2321 2.851426 TCCCGTTACAGTTGGGGAA 58.149 52.632 3.97 0.00 45.53 3.97
1894 2322 4.643860 TCCCGTTACAGTTGGGGA 57.356 55.556 5.59 4.11 46.31 4.81
1895 2323 3.570912 AATATCCCGTTACAGTTGGGG 57.429 47.619 5.59 1.96 43.50 4.96
1896 2324 4.703093 ACAAAATATCCCGTTACAGTTGGG 59.297 41.667 0.00 0.00 44.75 4.12
1897 2325 5.890424 ACAAAATATCCCGTTACAGTTGG 57.110 39.130 0.00 0.00 0.00 3.77
1898 2326 7.364200 TGAAACAAAATATCCCGTTACAGTTG 58.636 34.615 0.00 0.00 0.00 3.16
1899 2327 7.513371 TGAAACAAAATATCCCGTTACAGTT 57.487 32.000 0.00 0.00 0.00 3.16
1900 2328 7.513371 TTGAAACAAAATATCCCGTTACAGT 57.487 32.000 0.00 0.00 0.00 3.55
1906 2334 9.936759 ACAAATTATTGAAACAAAATATCCCGT 57.063 25.926 0.00 0.00 38.94 5.28
1988 2416 7.647715 AGCATGTGTAATTGTGTAAGTGAAAAC 59.352 33.333 0.00 0.00 0.00 2.43
2054 2488 3.947910 ATTGCCCATTTGACAGAAGTG 57.052 42.857 0.00 0.00 0.00 3.16
2064 2498 5.868801 CACGATGAAAACTAATTGCCCATTT 59.131 36.000 0.00 0.00 0.00 2.32
2090 2524 5.178061 TGCAGATACCATAGTGTTTCACAG 58.822 41.667 2.80 0.00 36.74 3.66
2123 2558 9.377312 ACACATATATTTGCAAATGGTTAAACC 57.623 29.630 30.43 0.00 39.22 3.27
2202 3974 6.325919 TGGTACTATTTTCAGTTTGCCAAG 57.674 37.500 0.00 0.00 0.00 3.61
2207 3979 8.094798 TGCTACTTGGTACTATTTTCAGTTTG 57.905 34.615 0.00 0.00 0.00 2.93
2227 3999 8.575454 GTGAAAATATTTTTCACGACATGCTAC 58.425 33.333 22.66 4.38 45.63 3.58
2497 4271 3.181462 TGAAGCCTGCTGGATGTATAGTG 60.181 47.826 14.77 0.00 34.57 2.74
2589 4364 2.032799 TGCCTATATTTCTTTTGCCGCG 59.967 45.455 0.00 0.00 0.00 6.46
2605 4380 9.562583 CGTTTAGTTAAATGCTATTTTTGCCTA 57.437 29.630 0.00 0.00 0.00 3.93
2617 4392 4.154556 TGGCACTACCGTTTAGTTAAATGC 59.845 41.667 0.00 0.00 43.94 3.56
2638 4413 8.742777 CAGTTTGGGTATTATGATGGATTATGG 58.257 37.037 0.00 0.00 0.00 2.74
2673 4448 8.691661 ATTTTGAGGCATACTTTTCCGTATAT 57.308 30.769 0.00 0.00 0.00 0.86
2674 4449 7.990886 AGATTTTGAGGCATACTTTTCCGTATA 59.009 33.333 0.00 0.00 0.00 1.47
2675 4450 6.828785 AGATTTTGAGGCATACTTTTCCGTAT 59.171 34.615 0.00 0.00 0.00 3.06
2676 4451 6.177610 AGATTTTGAGGCATACTTTTCCGTA 58.822 36.000 0.00 0.00 0.00 4.02
2677 4452 5.010282 AGATTTTGAGGCATACTTTTCCGT 58.990 37.500 0.00 0.00 0.00 4.69
2678 4453 5.567138 AGATTTTGAGGCATACTTTTCCG 57.433 39.130 0.00 0.00 0.00 4.30
2680 4455 8.850452 CGTTTAAGATTTTGAGGCATACTTTTC 58.150 33.333 0.00 0.00 0.00 2.29
2684 4459 5.357032 CCCGTTTAAGATTTTGAGGCATACT 59.643 40.000 0.00 0.00 0.00 2.12
2685 4460 5.355910 TCCCGTTTAAGATTTTGAGGCATAC 59.644 40.000 0.00 0.00 0.00 2.39
2686 4461 5.502079 TCCCGTTTAAGATTTTGAGGCATA 58.498 37.500 0.00 0.00 0.00 3.14
2687 4462 4.340617 TCCCGTTTAAGATTTTGAGGCAT 58.659 39.130 0.00 0.00 0.00 4.40
2688 4463 3.756434 CTCCCGTTTAAGATTTTGAGGCA 59.244 43.478 0.00 0.00 0.00 4.75
2689 4464 3.756963 ACTCCCGTTTAAGATTTTGAGGC 59.243 43.478 0.00 0.00 0.00 4.70
2775 4562 6.588719 TTTCCAAAAGTGATCCACATAAGG 57.411 37.500 0.00 0.00 36.74 2.69
2806 4593 9.696917 AAAAATATCAGAGTTTTTCTTTCGCAT 57.303 25.926 4.12 0.00 31.43 4.73
2878 4665 2.368875 ACATCTCTCGTGGACCTTGTTT 59.631 45.455 0.00 0.00 0.00 2.83
2897 4684 5.994668 TGTGTCTAAATGCACAGTGATAACA 59.005 36.000 4.15 0.00 40.24 2.41
2898 4685 6.480524 TGTGTCTAAATGCACAGTGATAAC 57.519 37.500 4.15 0.00 40.24 1.89
2913 4700 6.591750 TGTTTTGTTTCCCTTTGTGTCTAA 57.408 33.333 0.00 0.00 0.00 2.10
2919 4706 7.661847 TGTGTATTTTGTTTTGTTTCCCTTTGT 59.338 29.630 0.00 0.00 0.00 2.83
2920 4707 8.034058 TGTGTATTTTGTTTTGTTTCCCTTTG 57.966 30.769 0.00 0.00 0.00 2.77
2954 4741 1.904771 CCGGGTGTCTCCATTGCTA 59.095 57.895 0.00 0.00 38.11 3.49
3016 4803 7.448469 ACACTCAGATTGCCTGTACTAAATTTT 59.552 33.333 0.00 0.00 43.38 1.82
3034 4822 3.643320 AGTCTGGACAAATCACACTCAGA 59.357 43.478 3.51 0.00 0.00 3.27
3035 4823 3.993081 GAGTCTGGACAAATCACACTCAG 59.007 47.826 3.51 0.00 31.33 3.35
3193 4984 4.479158 ACCAACAAAATGTCCTGGTACAT 58.521 39.130 5.31 6.10 39.11 2.29
3380 5172 3.448301 GGGATGAACCTCAAATGCATTGA 59.552 43.478 13.82 11.44 45.23 2.57
3507 5299 7.569240 GTTCTTATATTATGGGATGGAGGGAG 58.431 42.308 0.00 0.00 0.00 4.30
3508 5300 6.156256 CGTTCTTATATTATGGGATGGAGGGA 59.844 42.308 0.00 0.00 0.00 4.20
3509 5301 6.070194 ACGTTCTTATATTATGGGATGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
3510 5302 6.947464 ACGTTCTTATATTATGGGATGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
3511 5303 8.848474 AAACGTTCTTATATTATGGGATGGAG 57.152 34.615 0.00 0.00 0.00 3.86
3512 5304 9.635404 AAAAACGTTCTTATATTATGGGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
3513 5305 9.677567 CAAAAACGTTCTTATATTATGGGATGG 57.322 33.333 0.00 0.00 0.00 3.51
3516 5308 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3517 5309 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3523 5315 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
3524 5316 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
3525 5317 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
3526 5318 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
3527 5319 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
3528 5320 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
3529 5321 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
3542 5334 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
3543 5335 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
3544 5336 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3545 5337 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3550 5342 8.437742 CCGTAATATAAGAACGTTTTTGACACT 58.562 33.333 13.87 0.00 34.90 3.55
3551 5343 7.689400 CCCGTAATATAAGAACGTTTTTGACAC 59.311 37.037 13.87 4.53 34.90 3.67
3552 5344 7.601886 TCCCGTAATATAAGAACGTTTTTGACA 59.398 33.333 13.87 0.01 34.90 3.58
3553 5345 7.899841 GTCCCGTAATATAAGAACGTTTTTGAC 59.100 37.037 13.87 5.89 34.90 3.18
3554 5346 7.201427 CGTCCCGTAATATAAGAACGTTTTTGA 60.201 37.037 13.87 2.81 34.90 2.69
3555 5347 6.896088 CGTCCCGTAATATAAGAACGTTTTTG 59.104 38.462 13.87 0.00 34.90 2.44
3556 5348 6.035975 CCGTCCCGTAATATAAGAACGTTTTT 59.964 38.462 9.22 9.22 34.90 1.94
3557 5349 5.519927 CCGTCCCGTAATATAAGAACGTTTT 59.480 40.000 0.46 0.00 34.90 2.43
3558 5350 5.043248 CCGTCCCGTAATATAAGAACGTTT 58.957 41.667 0.46 0.00 34.90 3.60
3559 5351 4.338118 TCCGTCCCGTAATATAAGAACGTT 59.662 41.667 0.00 0.00 34.90 3.99
3560 5352 3.882888 TCCGTCCCGTAATATAAGAACGT 59.117 43.478 0.00 0.00 34.90 3.99
3561 5353 4.470462 CTCCGTCCCGTAATATAAGAACG 58.530 47.826 0.00 0.00 36.42 3.95
3562 5354 4.321527 CCCTCCGTCCCGTAATATAAGAAC 60.322 50.000 0.00 0.00 0.00 3.01
3563 5355 3.828451 CCCTCCGTCCCGTAATATAAGAA 59.172 47.826 0.00 0.00 0.00 2.52
3564 5356 3.074390 TCCCTCCGTCCCGTAATATAAGA 59.926 47.826 0.00 0.00 0.00 2.10
3565 5357 3.424703 TCCCTCCGTCCCGTAATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
3566 5358 3.181429 ACTCCCTCCGTCCCGTAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
3567 5359 2.376518 ACTCCCTCCGTCCCGTAATATA 59.623 50.000 0.00 0.00 0.00 0.86
3568 5360 1.146566 ACTCCCTCCGTCCCGTAATAT 59.853 52.381 0.00 0.00 0.00 1.28
3569 5361 0.552848 ACTCCCTCCGTCCCGTAATA 59.447 55.000 0.00 0.00 0.00 0.98
3570 5362 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
3571 5363 0.107017 CTACTCCCTCCGTCCCGTAA 60.107 60.000 0.00 0.00 0.00 3.18
3572 5364 1.528824 CTACTCCCTCCGTCCCGTA 59.471 63.158 0.00 0.00 0.00 4.02
3573 5365 2.274760 CTACTCCCTCCGTCCCGT 59.725 66.667 0.00 0.00 0.00 5.28
3574 5366 3.217743 GCTACTCCCTCCGTCCCG 61.218 72.222 0.00 0.00 0.00 5.14
3575 5367 1.049289 AATGCTACTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
3576 5368 0.831307 AAATGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
3577 5369 2.693267 AAAATGCTACTCCCTCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
3578 5370 2.304761 TGAAAAATGCTACTCCCTCCGT 59.695 45.455 0.00 0.00 0.00 4.69
3579 5371 2.985896 TGAAAAATGCTACTCCCTCCG 58.014 47.619 0.00 0.00 0.00 4.63
3580 5372 7.588497 ATTAATGAAAAATGCTACTCCCTCC 57.412 36.000 0.00 0.00 0.00 4.30
3581 5373 9.343539 ACTATTAATGAAAAATGCTACTCCCTC 57.656 33.333 0.00 0.00 0.00 4.30
3654 5448 5.006153 TGTACAAGTGAACATATCTCCCG 57.994 43.478 0.00 0.00 0.00 5.14
3670 5464 8.101654 AGTCAAAGTAAAAGTGTGTTGTACAA 57.898 30.769 3.59 3.59 41.89 2.41
3730 5524 1.875576 GCTCTTGCGTCCATCCCTATG 60.876 57.143 0.00 0.00 0.00 2.23
3882 5676 3.118261 TGCAGGAACCCTAGTCAATGATC 60.118 47.826 0.00 0.00 29.64 2.92
3904 5698 4.017126 TCCAGTCAACATCTCGTATGTCT 58.983 43.478 6.62 0.00 0.00 3.41
3940 5734 4.447138 TTCAGGAACATACCCACAACTT 57.553 40.909 0.00 0.00 0.00 2.66
4312 6106 4.095036 GCAGAGGCTTCCACTAAATACAAC 59.905 45.833 0.00 0.00 36.96 3.32
4351 6145 6.661377 TGCATGTAAAGCCTTATAAAGTGGAA 59.339 34.615 0.00 0.00 0.00 3.53
4352 6146 6.094881 GTGCATGTAAAGCCTTATAAAGTGGA 59.905 38.462 0.00 0.00 0.00 4.02
4371 6165 0.806868 AAACAGCGATCCAGTGCATG 59.193 50.000 0.00 0.00 0.00 4.06
4403 6197 7.067981 CCAAATAATCAGAGGAAAAGGAAGAGG 59.932 40.741 0.00 0.00 0.00 3.69
4404 6198 7.831193 TCCAAATAATCAGAGGAAAAGGAAGAG 59.169 37.037 0.00 0.00 0.00 2.85
4410 6204 6.600822 TGCTCTCCAAATAATCAGAGGAAAAG 59.399 38.462 0.00 0.00 34.14 2.27
4434 6228 2.604174 GGGTTTGAGTGCGACCGTG 61.604 63.158 0.00 0.00 34.22 4.94
4482 6276 9.195411 GCAAAATCTTGTCAGTGAAAAATATCA 57.805 29.630 0.00 0.00 34.79 2.15
4508 6302 4.572389 CACCTTTCAGTCCAAGATAATCCG 59.428 45.833 0.00 0.00 0.00 4.18
4518 6312 2.435372 AAAGTGCACCTTTCAGTCCA 57.565 45.000 14.63 0.00 39.17 4.02
4571 6366 4.307032 ACTGTGATTGCTTGGAAGGTAT 57.693 40.909 0.00 0.00 0.00 2.73
4649 6449 4.626287 GCATCTCCTTTAGTGTGATTCCCA 60.626 45.833 0.00 0.00 0.00 4.37
4655 6455 3.519107 TCCATGCATCTCCTTTAGTGTGA 59.481 43.478 0.00 0.00 0.00 3.58
4704 6505 6.005823 TCTCTTGTGTTCCACATTTGATCAT 58.994 36.000 0.00 0.00 44.16 2.45
4709 6510 7.439157 TTCTATCTCTTGTGTTCCACATTTG 57.561 36.000 0.00 0.00 44.16 2.32
4735 6536 9.983431 GTTGTGTTTTATTACTTCGTTTAATGC 57.017 29.630 0.00 0.00 0.00 3.56
4751 6552 9.743057 CCAATGTTTTCTATCTGTTGTGTTTTA 57.257 29.630 0.00 0.00 0.00 1.52
4752 6553 8.474025 TCCAATGTTTTCTATCTGTTGTGTTTT 58.526 29.630 0.00 0.00 0.00 2.43
4777 6579 7.952671 TCCATCAGTGTATATGTTACTTCCTC 58.047 38.462 0.00 0.00 0.00 3.71
4785 6587 6.893583 AGCTTCTTCCATCAGTGTATATGTT 58.106 36.000 0.00 0.00 0.00 2.71
4793 6595 3.331478 ACAGAGCTTCTTCCATCAGTG 57.669 47.619 0.00 0.00 0.00 3.66
4794 6596 5.690464 ATTACAGAGCTTCTTCCATCAGT 57.310 39.130 0.00 0.00 0.00 3.41
4795 6597 7.271511 AGTTATTACAGAGCTTCTTCCATCAG 58.728 38.462 0.00 0.00 0.00 2.90
4797 6599 7.496747 AGAGTTATTACAGAGCTTCTTCCATC 58.503 38.462 0.00 0.00 0.00 3.51
4798 6600 7.430760 AGAGTTATTACAGAGCTTCTTCCAT 57.569 36.000 0.00 0.00 0.00 3.41
4799 6601 6.859112 AGAGTTATTACAGAGCTTCTTCCA 57.141 37.500 0.00 0.00 0.00 3.53
4800 6602 7.100409 ACAAGAGTTATTACAGAGCTTCTTCC 58.900 38.462 0.00 0.00 0.00 3.46
4842 6644 8.154856 AGTAAATAGAATTGCTCGCCCTAATAA 58.845 33.333 0.00 0.00 0.00 1.40
4843 6645 7.676947 AGTAAATAGAATTGCTCGCCCTAATA 58.323 34.615 0.00 0.00 0.00 0.98
4844 6646 6.534634 AGTAAATAGAATTGCTCGCCCTAAT 58.465 36.000 0.00 0.00 0.00 1.73
4845 6647 5.925509 AGTAAATAGAATTGCTCGCCCTAA 58.074 37.500 0.00 0.00 0.00 2.69
4914 6716 4.457257 AGTCTTGCTTATCAGTGCCTTTTC 59.543 41.667 0.00 0.00 0.00 2.29
4918 6720 2.355513 CCAGTCTTGCTTATCAGTGCCT 60.356 50.000 0.00 0.00 0.00 4.75
4920 6722 2.935201 CTCCAGTCTTGCTTATCAGTGC 59.065 50.000 0.00 0.00 0.00 4.40
4921 6723 3.529533 CCTCCAGTCTTGCTTATCAGTG 58.470 50.000 0.00 0.00 0.00 3.66
4923 6725 2.093288 TGCCTCCAGTCTTGCTTATCAG 60.093 50.000 0.00 0.00 0.00 2.90
4924 6726 1.908619 TGCCTCCAGTCTTGCTTATCA 59.091 47.619 0.00 0.00 0.00 2.15
4926 6728 3.084786 GTTTGCCTCCAGTCTTGCTTAT 58.915 45.455 0.00 0.00 0.00 1.73
4927 6729 2.158682 TGTTTGCCTCCAGTCTTGCTTA 60.159 45.455 0.00 0.00 0.00 3.09
4929 6731 0.183492 TGTTTGCCTCCAGTCTTGCT 59.817 50.000 0.00 0.00 0.00 3.91
4930 6732 1.032014 TTGTTTGCCTCCAGTCTTGC 58.968 50.000 0.00 0.00 0.00 4.01
4931 6733 3.447742 GTTTTGTTTGCCTCCAGTCTTG 58.552 45.455 0.00 0.00 0.00 3.02
4937 6739 2.696187 GGTAAGGTTTTGTTTGCCTCCA 59.304 45.455 0.00 0.00 0.00 3.86
4938 6740 2.696187 TGGTAAGGTTTTGTTTGCCTCC 59.304 45.455 0.00 0.00 31.29 4.30
4946 6748 4.447138 TCCATCTGTGGTAAGGTTTTGT 57.553 40.909 0.00 0.00 46.16 2.83
4951 6754 1.985159 TGCTTCCATCTGTGGTAAGGT 59.015 47.619 0.00 0.00 46.16 3.50
4983 6786 8.992073 GCTTAAAATCATTTCAGAACAACCAAT 58.008 29.630 0.00 0.00 0.00 3.16
4987 6790 7.867403 TGAGGCTTAAAATCATTTCAGAACAAC 59.133 33.333 0.00 0.00 0.00 3.32
4988 6791 7.950512 TGAGGCTTAAAATCATTTCAGAACAA 58.049 30.769 0.00 0.00 0.00 2.83
4989 6792 7.523293 TGAGGCTTAAAATCATTTCAGAACA 57.477 32.000 0.00 0.00 0.00 3.18
4990 6793 8.299570 TCTTGAGGCTTAAAATCATTTCAGAAC 58.700 33.333 0.00 0.00 0.00 3.01
5005 6808 3.324846 TCTGAAGCAACTCTTGAGGCTTA 59.675 43.478 11.95 0.00 45.81 3.09
5008 6811 2.075338 CTCTGAAGCAACTCTTGAGGC 58.925 52.381 2.55 0.00 36.77 4.70
5247 7051 6.348540 CCATTCCTCGACTTTCCTTACAAAAG 60.349 42.308 0.00 0.00 39.20 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.