Multiple sequence alignment - TraesCS5B01G412600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G412600 chr5B 100.000 2258 0 0 1 2258 587594521 587596778 0.000000e+00 4170
1 TraesCS5B01G412600 chr5B 88.920 704 72 6 232 932 538611896 538612596 0.000000e+00 863
2 TraesCS5B01G412600 chr5B 86.281 605 65 9 1331 1922 815438 814839 1.890000e-180 641
3 TraesCS5B01G412600 chr5B 93.240 429 27 2 1 428 127221105 127221532 4.090000e-177 630
4 TraesCS5B01G412600 chr5B 86.726 339 36 8 1924 2258 343961172 343961505 3.540000e-98 368
5 TraesCS5B01G412600 chr5D 93.844 1267 73 5 993 2258 479868125 479869387 0.000000e+00 1903
6 TraesCS5B01G412600 chr5D 83.690 748 95 20 201 934 380679871 380680605 0.000000e+00 680
7 TraesCS5B01G412600 chr5D 97.015 67 1 1 934 999 479791928 479791994 6.590000e-21 111
8 TraesCS5B01G412600 chr1A 89.229 1012 85 13 934 1923 440925057 440926066 0.000000e+00 1243
9 TraesCS5B01G412600 chr1A 81.493 978 158 16 939 1897 75712454 75711481 0.000000e+00 782
10 TraesCS5B01G412600 chr4D 84.459 933 124 14 15 934 96314109 96313185 0.000000e+00 900
11 TraesCS5B01G412600 chr4D 94.269 506 29 0 429 934 7247657 7247152 0.000000e+00 774
12 TraesCS5B01G412600 chr4D 93.945 512 31 0 423 934 320395516 320396027 0.000000e+00 774
13 TraesCS5B01G412600 chr4D 85.152 330 35 11 1923 2244 127573060 127572737 2.160000e-85 326
14 TraesCS5B01G412600 chr4D 84.366 339 44 8 1924 2258 92051644 92051977 7.780000e-85 324
15 TraesCS5B01G412600 chr4D 84.058 345 42 10 1924 2258 446811798 446812139 1.010000e-83 320
16 TraesCS5B01G412600 chr7A 84.499 929 118 23 15 934 654940499 654939588 0.000000e+00 894
17 TraesCS5B01G412600 chr7A 85.452 818 90 18 132 934 549935169 549935972 0.000000e+00 824
18 TraesCS5B01G412600 chr7A 83.473 835 131 6 939 1770 430254908 430254078 0.000000e+00 771
19 TraesCS5B01G412600 chr7A 89.739 536 43 5 1400 1923 275272487 275271952 0.000000e+00 675
20 TraesCS5B01G412600 chr3D 93.933 511 30 1 423 933 123005872 123006381 0.000000e+00 771
21 TraesCS5B01G412600 chr3D 85.000 340 41 10 1924 2258 260453452 260453786 9.990000e-89 337
22 TraesCS5B01G412600 chr3D 85.241 332 40 8 1921 2246 260400839 260401167 1.290000e-87 333
23 TraesCS5B01G412600 chr3D 85.196 331 34 12 1924 2244 268180228 268179903 2.160000e-85 326
24 TraesCS5B01G412600 chr2D 85.319 722 88 16 221 934 317237800 317238511 0.000000e+00 730
25 TraesCS5B01G412600 chr2D 84.911 338 44 7 1924 2258 495843305 495843638 3.590000e-88 335
26 TraesCS5B01G412600 chr2D 84.661 339 44 7 1924 2257 93108424 93108759 4.650000e-87 331
27 TraesCS5B01G412600 chr5A 84.594 714 81 20 239 934 295905703 295905001 0.000000e+00 682
28 TraesCS5B01G412600 chr5A 82.716 486 41 13 1429 1898 230920050 230920508 2.100000e-105 392
29 TraesCS5B01G412600 chr7D 89.483 542 45 5 1394 1923 22532465 22533006 0.000000e+00 675
30 TraesCS5B01G412600 chr7D 85.629 334 33 12 1924 2246 168730494 168730823 9.990000e-89 337
31 TraesCS5B01G412600 chr7D 85.804 317 40 4 1930 2244 520823541 520823228 4.650000e-87 331
32 TraesCS5B01G412600 chr2A 89.483 542 45 5 1394 1923 277143917 277144458 0.000000e+00 675
33 TraesCS5B01G412600 chr2A 87.009 331 32 8 1923 2244 109318198 109317870 1.650000e-96 363
34 TraesCS5B01G412600 chr2A 85.366 123 15 3 1804 1923 742048181 742048303 8.470000e-25 124
35 TraesCS5B01G412600 chr6A 89.552 536 44 5 1400 1923 70917409 70916874 0.000000e+00 669
36 TraesCS5B01G412600 chr4B 93.458 428 27 1 2 429 379413227 379413653 3.160000e-178 634
37 TraesCS5B01G412600 chr4B 83.721 344 43 12 1925 2258 127269225 127269565 1.680000e-81 313
38 TraesCS5B01G412600 chr3B 93.458 428 27 1 1 428 66007710 66008136 3.160000e-178 634
39 TraesCS5B01G412600 chr3B 92.991 428 29 1 1 428 70071499 70071073 6.850000e-175 623
40 TraesCS5B01G412600 chr3B 92.991 428 26 2 1 428 294829915 294830338 2.460000e-174 621
41 TraesCS5B01G412600 chr7B 93.240 429 27 2 1 428 362727334 362726907 4.090000e-177 630
42 TraesCS5B01G412600 chr3A 85.924 341 39 9 1910 2246 328651525 328651860 2.760000e-94 355
43 TraesCS5B01G412600 chr1D 84.884 344 39 9 1924 2258 62666525 62666186 3.590000e-88 335
44 TraesCS5B01G412600 chr1D 86.102 295 34 6 1924 2213 438454822 438454530 6.060000e-81 311
45 TraesCS5B01G412600 chr1D 83.529 340 49 7 1924 2258 442523422 442523085 6.060000e-81 311
46 TraesCS5B01G412600 chr1D 83.891 329 42 8 1924 2244 154452885 154452560 1.010000e-78 303
47 TraesCS5B01G412600 chr1D 86.331 278 34 4 1921 2195 224414464 224414740 1.310000e-77 300
48 TraesCS5B01G412600 chr1D 85.374 294 35 6 1924 2210 468793810 468794102 4.710000e-77 298
49 TraesCS5B01G412600 chr1D 82.948 346 42 15 1924 2258 400123698 400123359 1.700000e-76 296
50 TraesCS5B01G412600 chr1D 86.182 275 33 4 1924 2194 80070619 80070892 2.190000e-75 292
51 TraesCS5B01G412600 chr1D 82.263 327 47 11 1923 2244 284753518 284753838 2.860000e-69 272
52 TraesCS5B01G412600 chr1B 79.559 499 77 13 960 1456 684791066 684790591 1.290000e-87 333
53 TraesCS5B01G412600 chr1B 84.104 346 47 8 1917 2258 486981883 486981542 6.010000e-86 327
54 TraesCS5B01G412600 chr6D 84.257 343 43 9 1924 2258 353957783 353957444 7.780000e-85 324
55 TraesCS5B01G412600 chr6D 84.012 344 41 12 1924 2258 266585305 266585643 3.620000e-83 318
56 TraesCS5B01G412600 chr6D 84.058 345 39 14 1924 2258 395068408 395068746 3.620000e-83 318
57 TraesCS5B01G412600 chr6D 83.851 322 43 8 1924 2240 368407609 368407926 4.710000e-77 298
58 TraesCS5B01G412600 chr6D 92.386 197 15 0 1394 1590 29737927 29738123 4.750000e-72 281
59 TraesCS5B01G412600 chrUn 83.333 342 49 5 1924 2258 170407154 170407494 2.180000e-80 309
60 TraesCS5B01G412600 chrUn 82.029 345 48 11 1924 2258 433649974 433649634 4.750000e-72 281
61 TraesCS5B01G412600 chrUn 88.412 233 25 2 1924 2156 12809664 12809894 1.710000e-71 279
62 TraesCS5B01G412600 chrUn 85.401 274 32 7 1926 2194 58339866 58339596 6.140000e-71 278
63 TraesCS5B01G412600 chrUn 85.401 274 32 7 1926 2194 302489733 302489463 6.140000e-71 278
64 TraesCS5B01G412600 chrUn 86.531 245 29 4 1924 2166 271850571 271850329 1.330000e-67 267
65 TraesCS5B01G412600 chrUn 86.531 245 29 4 1924 2166 367995764 367996006 1.330000e-67 267
66 TraesCS5B01G412600 chrUn 88.144 194 21 2 1926 2118 67763958 67764150 1.740000e-56 230
67 TraesCS5B01G412600 chrUn 86.190 210 26 3 1924 2132 92334591 92334798 8.120000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G412600 chr5B 587594521 587596778 2257 False 4170 4170 100.000 1 2258 1 chr5B.!!$F4 2257
1 TraesCS5B01G412600 chr5B 538611896 538612596 700 False 863 863 88.920 232 932 1 chr5B.!!$F3 700
2 TraesCS5B01G412600 chr5B 814839 815438 599 True 641 641 86.281 1331 1922 1 chr5B.!!$R1 591
3 TraesCS5B01G412600 chr5D 479868125 479869387 1262 False 1903 1903 93.844 993 2258 1 chr5D.!!$F3 1265
4 TraesCS5B01G412600 chr5D 380679871 380680605 734 False 680 680 83.690 201 934 1 chr5D.!!$F1 733
5 TraesCS5B01G412600 chr1A 440925057 440926066 1009 False 1243 1243 89.229 934 1923 1 chr1A.!!$F1 989
6 TraesCS5B01G412600 chr1A 75711481 75712454 973 True 782 782 81.493 939 1897 1 chr1A.!!$R1 958
7 TraesCS5B01G412600 chr4D 96313185 96314109 924 True 900 900 84.459 15 934 1 chr4D.!!$R2 919
8 TraesCS5B01G412600 chr4D 7247152 7247657 505 True 774 774 94.269 429 934 1 chr4D.!!$R1 505
9 TraesCS5B01G412600 chr4D 320395516 320396027 511 False 774 774 93.945 423 934 1 chr4D.!!$F2 511
10 TraesCS5B01G412600 chr7A 654939588 654940499 911 True 894 894 84.499 15 934 1 chr7A.!!$R3 919
11 TraesCS5B01G412600 chr7A 549935169 549935972 803 False 824 824 85.452 132 934 1 chr7A.!!$F1 802
12 TraesCS5B01G412600 chr7A 430254078 430254908 830 True 771 771 83.473 939 1770 1 chr7A.!!$R2 831
13 TraesCS5B01G412600 chr7A 275271952 275272487 535 True 675 675 89.739 1400 1923 1 chr7A.!!$R1 523
14 TraesCS5B01G412600 chr3D 123005872 123006381 509 False 771 771 93.933 423 933 1 chr3D.!!$F1 510
15 TraesCS5B01G412600 chr2D 317237800 317238511 711 False 730 730 85.319 221 934 1 chr2D.!!$F2 713
16 TraesCS5B01G412600 chr5A 295905001 295905703 702 True 682 682 84.594 239 934 1 chr5A.!!$R1 695
17 TraesCS5B01G412600 chr7D 22532465 22533006 541 False 675 675 89.483 1394 1923 1 chr7D.!!$F1 529
18 TraesCS5B01G412600 chr2A 277143917 277144458 541 False 675 675 89.483 1394 1923 1 chr2A.!!$F1 529
19 TraesCS5B01G412600 chr6A 70916874 70917409 535 True 669 669 89.552 1400 1923 1 chr6A.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 179 0.992695 GCCCCCTCTTTGGTACTTCT 59.007 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2172 0.044092 TGGGTCTCTTCTGGCCCATA 59.956 55.0 0.0 0.0 45.4 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.760151 TGATTTTCGTCGACTTCCCTAGA 59.240 43.478 14.70 0.00 0.00 2.43
74 76 2.890808 TATAGAGCAAAGAGGCGGTG 57.109 50.000 0.00 0.00 39.27 4.94
79 81 4.697756 CAAAGAGGCGGTGCGGGA 62.698 66.667 0.00 0.00 0.00 5.14
150 152 1.451504 CCCAGGTGTCTTGTGCTCA 59.548 57.895 0.00 0.00 0.00 4.26
158 160 2.743928 CTTGTGCTCACCTCGGGC 60.744 66.667 0.00 0.00 0.00 6.13
168 170 4.115199 CCTCGGGCCCCCTCTTTG 62.115 72.222 18.66 0.00 0.00 2.77
170 172 4.995058 TCGGGCCCCCTCTTTGGT 62.995 66.667 18.66 0.00 0.00 3.67
176 179 0.992695 GCCCCCTCTTTGGTACTTCT 59.007 55.000 0.00 0.00 0.00 2.85
185 188 1.989706 TTGGTACTTCTTTGGCCCAC 58.010 50.000 0.00 0.00 0.00 4.61
188 191 1.534729 GTACTTCTTTGGCCCACTGG 58.465 55.000 0.00 0.00 0.00 4.00
251 257 4.379082 GCGTTTGGACTCCGTTTGATATTT 60.379 41.667 0.00 0.00 0.00 1.40
515 540 6.404403 GCATGTTGAGGGATTGCTATATGATG 60.404 42.308 0.00 0.00 0.00 3.07
551 576 6.233434 TCATTGTTGAGAGAACTTGCACTAT 58.767 36.000 0.00 0.00 0.00 2.12
583 609 3.322191 ACCCTAGGCCTTGTTTTCAAA 57.678 42.857 12.58 0.00 39.47 2.69
607 633 7.124347 ACATTGCAATATTGTTTTTGCTCAG 57.876 32.000 12.53 0.00 46.50 3.35
627 653 6.204108 GCTCAGTTTTGTTACTTGCTACCTTA 59.796 38.462 0.00 0.00 0.00 2.69
694 732 7.151976 TCCATATTACACTTGTATCACCATCG 58.848 38.462 0.00 0.00 0.00 3.84
720 758 2.361438 GCCGAACTAGTGCACCTATACT 59.639 50.000 14.63 0.00 0.00 2.12
781 819 4.892934 ACTCTTTGTTATTTGGTTGCAGGA 59.107 37.500 0.00 0.00 0.00 3.86
982 1021 4.394729 CCAAACTAGCCCAGAAAGTGTTA 58.605 43.478 0.00 0.00 0.00 2.41
989 1028 2.956333 GCCCAGAAAGTGTTAAAGGTGT 59.044 45.455 0.00 0.00 0.00 4.16
1032 1071 0.835941 CAGAGCATTGGAGTAGGGCT 59.164 55.000 0.00 0.00 37.56 5.19
1061 1100 1.348036 GCTAGGGTCTTGGTGTGACTT 59.652 52.381 0.00 0.00 35.04 3.01
1267 1306 5.535029 ACATTAAGAGGTGAGGGGTATGTA 58.465 41.667 0.00 0.00 0.00 2.29
1320 1359 3.077359 AGTTCAAGAAGGTGTGCATAGC 58.923 45.455 4.25 4.25 0.00 2.97
1388 1427 1.073284 GGAGTTGTCAGGTTTGCCCTA 59.927 52.381 0.00 0.00 43.86 3.53
1397 1436 3.780294 TCAGGTTTGCCCTATAGACATGT 59.220 43.478 0.00 0.00 43.86 3.21
1458 1497 1.185315 ACATTGCCCCATGCTACAAC 58.815 50.000 0.00 0.00 42.00 3.32
1489 1528 7.051623 TGGGTACAACAAGATATACAACCATC 58.948 38.462 0.00 0.00 0.00 3.51
1581 1620 3.087370 AGGGTAATGCCAGGAAGAAAC 57.913 47.619 0.00 0.00 39.65 2.78
1608 1653 6.262049 AGACAAAAAGAAGAAGAGAAGAAGGC 59.738 38.462 0.00 0.00 0.00 4.35
1609 1654 5.888161 ACAAAAAGAAGAAGAGAAGAAGGCA 59.112 36.000 0.00 0.00 0.00 4.75
1911 1969 3.718723 AGAAGCAAGGAGGACATACTCT 58.281 45.455 0.00 0.00 37.63 3.24
1928 1986 8.200024 ACATACTCTAGCAAGACCAATGATAT 57.800 34.615 0.00 0.00 0.00 1.63
1929 1987 8.093307 ACATACTCTAGCAAGACCAATGATATG 58.907 37.037 0.00 0.00 0.00 1.78
1938 1996 5.698741 AGACCAATGATATGTCTCCAACA 57.301 39.130 0.00 0.00 43.51 3.33
2018 2076 8.974060 TGGTATGATTTGATTAGAACTAACCC 57.026 34.615 0.00 0.00 0.00 4.11
2019 2077 7.713507 TGGTATGATTTGATTAGAACTAACCCG 59.286 37.037 0.00 0.00 0.00 5.28
2038 2096 2.350772 CCGGACTGACATTGTTTTCAGC 60.351 50.000 0.00 0.00 42.67 4.26
2044 2102 4.398988 ACTGACATTGTTTTCAGCAGAACA 59.601 37.500 7.65 0.00 42.67 3.18
2048 2106 4.864247 ACATTGTTTTCAGCAGAACAACAC 59.136 37.500 14.44 2.56 45.33 3.32
2085 2143 5.356882 TGTGCAGAAATAAAAGTTCTCGG 57.643 39.130 0.00 0.00 32.96 4.63
2134 2193 2.224159 GGGCCAGAAGAGACCCACA 61.224 63.158 4.39 0.00 42.33 4.17
2141 2200 0.036858 GAAGAGACCCACAGAGCACC 60.037 60.000 0.00 0.00 0.00 5.01
2166 2225 4.101448 GGCCAGGGAGTGCACGAT 62.101 66.667 12.01 0.00 0.00 3.73
2229 2288 1.301716 GCTTGTCGCTCCCTTGTGA 60.302 57.895 0.00 0.00 35.14 3.58
2232 2291 0.468226 TTGTCGCTCCCTTGTGAACT 59.532 50.000 0.00 0.00 0.00 3.01
2233 2292 0.033504 TGTCGCTCCCTTGTGAACTC 59.966 55.000 0.00 0.00 0.00 3.01
2237 2296 0.322008 GCTCCCTTGTGAACTCCCTG 60.322 60.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.840176 CGACGAAAATCAATTTCAGCCG 59.160 45.455 0.00 0.00 46.42 5.52
1 2 3.846335 GTCGACGAAAATCAATTTCAGCC 59.154 43.478 0.00 0.00 46.42 4.85
2 3 4.712763 AGTCGACGAAAATCAATTTCAGC 58.287 39.130 10.46 0.00 46.42 4.26
3 4 5.790495 GGAAGTCGACGAAAATCAATTTCAG 59.210 40.000 10.46 0.00 46.42 3.02
4 5 5.334569 GGGAAGTCGACGAAAATCAATTTCA 60.335 40.000 10.46 0.00 46.42 2.69
5 6 5.086727 GGGAAGTCGACGAAAATCAATTTC 58.913 41.667 10.46 4.21 43.32 2.17
6 7 4.760204 AGGGAAGTCGACGAAAATCAATTT 59.240 37.500 10.46 0.00 0.00 1.82
7 8 4.324267 AGGGAAGTCGACGAAAATCAATT 58.676 39.130 10.46 0.00 0.00 2.32
8 9 3.939066 AGGGAAGTCGACGAAAATCAAT 58.061 40.909 10.46 0.00 0.00 2.57
9 10 3.396260 AGGGAAGTCGACGAAAATCAA 57.604 42.857 10.46 0.00 0.00 2.57
10 11 3.760151 TCTAGGGAAGTCGACGAAAATCA 59.240 43.478 10.46 0.00 0.00 2.57
11 12 4.142425 ACTCTAGGGAAGTCGACGAAAATC 60.142 45.833 10.46 5.00 0.00 2.17
12 13 3.762823 ACTCTAGGGAAGTCGACGAAAAT 59.237 43.478 10.46 0.30 0.00 1.82
13 14 3.152341 ACTCTAGGGAAGTCGACGAAAA 58.848 45.455 10.46 0.00 0.00 2.29
83 85 2.978010 GTTGTGCCCACCTCGGTG 60.978 66.667 9.13 9.13 45.02 4.94
84 86 4.265056 GGTTGTGCCCACCTCGGT 62.265 66.667 0.00 0.00 0.00 4.69
140 142 3.059982 CCCGAGGTGAGCACAAGA 58.940 61.111 2.75 0.00 0.00 3.02
141 143 2.743928 GCCCGAGGTGAGCACAAG 60.744 66.667 2.75 0.00 0.00 3.16
150 152 4.677151 AAAGAGGGGGCCCGAGGT 62.677 66.667 17.79 0.00 41.95 3.85
158 160 3.421844 CAAAGAAGTACCAAAGAGGGGG 58.578 50.000 0.00 0.00 43.89 5.40
163 165 2.175931 TGGGCCAAAGAAGTACCAAAGA 59.824 45.455 2.13 0.00 0.00 2.52
166 168 1.497286 AGTGGGCCAAAGAAGTACCAA 59.503 47.619 8.40 0.00 0.00 3.67
168 170 1.534729 CAGTGGGCCAAAGAAGTACC 58.465 55.000 8.40 0.00 0.00 3.34
170 172 0.404040 CCCAGTGGGCCAAAGAAGTA 59.596 55.000 17.33 0.00 35.35 2.24
185 188 0.764890 TTGGACCAGAAGACACCCAG 59.235 55.000 0.00 0.00 0.00 4.45
293 302 4.019321 ACCTATTGACATAGTGCCAAGTGT 60.019 41.667 0.00 0.00 31.64 3.55
479 504 5.076182 TCCCTCAACATGCAACAAAGAATA 58.924 37.500 0.00 0.00 0.00 1.75
551 576 3.850173 AGGCCTAGGGTTCATACTTTCAA 59.150 43.478 1.29 0.00 0.00 2.69
607 633 9.524106 AAACAATAAGGTAGCAAGTAACAAAAC 57.476 29.630 0.00 0.00 0.00 2.43
720 758 7.093727 CCAACACACCCAATACAATGGTAAATA 60.094 37.037 0.00 0.00 38.91 1.40
781 819 6.119240 TGAAGATGGTCTCTCTGAAACAAT 57.881 37.500 0.00 0.00 31.03 2.71
982 1021 7.285401 AGTGTTCATGATGTCTTTAACACCTTT 59.715 33.333 17.89 3.67 44.78 3.11
989 1028 5.048782 GGTGCAGTGTTCATGATGTCTTTAA 60.049 40.000 0.00 0.00 0.00 1.52
1032 1071 3.908103 ACCAAGACCCTAGCTTGAAGTAA 59.092 43.478 9.43 0.00 44.16 2.24
1061 1100 6.775142 TGATTTACAAAGATTGTTCTCCACCA 59.225 34.615 0.54 0.00 42.22 4.17
1256 1295 4.226620 TCCAAAGAACCTTACATACCCCTC 59.773 45.833 0.00 0.00 0.00 4.30
1267 1306 3.142028 TCCTTCCCATTCCAAAGAACCTT 59.858 43.478 0.00 0.00 33.97 3.50
1320 1359 9.261180 CATATGTCCAAGTTTACTGTATACCTG 57.739 37.037 0.00 3.15 0.00 4.00
1361 1400 4.947388 GCAAACCTGACAACTCCCAATATA 59.053 41.667 0.00 0.00 0.00 0.86
1388 1427 3.541996 TTGCACCGATGACATGTCTAT 57.458 42.857 25.55 16.92 0.00 1.98
1458 1497 7.726216 TGTATATCTTGTTGTACCCAGAGATG 58.274 38.462 8.37 0.00 0.00 2.90
1489 1528 0.539051 CCCTCCACTAGTTGCAGGAG 59.461 60.000 16.59 16.59 45.68 3.69
1581 1620 8.127954 CCTTCTTCTCTTCTTCTTTTTGTCTTG 58.872 37.037 0.00 0.00 0.00 3.02
1608 1653 2.656947 TGGTTCCCTGAGGTTTCTTG 57.343 50.000 0.00 0.00 0.00 3.02
1609 1654 2.783510 TCTTGGTTCCCTGAGGTTTCTT 59.216 45.455 0.00 0.00 0.00 2.52
1630 1675 7.447853 TGCAATTTTAATGCCTTTCTTTGGAAT 59.552 29.630 0.00 0.00 43.16 3.01
1633 1678 6.557291 TGCAATTTTAATGCCTTTCTTTGG 57.443 33.333 0.00 0.00 43.16 3.28
1694 1739 6.154363 ACCTTTGTTTGGATTTTTCTCACAGA 59.846 34.615 0.00 0.00 0.00 3.41
1820 1877 9.084164 AGTACTATTTTTAGTAGTGCACGAATG 57.916 33.333 12.01 0.00 37.28 2.67
1911 1969 5.366477 TGGAGACATATCATTGGTCTTGCTA 59.634 40.000 0.00 0.00 41.68 3.49
2018 2076 2.290367 TGCTGAAAACAATGTCAGTCCG 59.710 45.455 3.14 0.00 42.72 4.79
2019 2077 3.565482 TCTGCTGAAAACAATGTCAGTCC 59.435 43.478 3.14 0.00 42.72 3.85
2085 2143 5.643379 TCACTGTAAATTTCAGCCCATTC 57.357 39.130 13.98 0.00 36.50 2.67
2113 2172 0.044092 TGGGTCTCTTCTGGCCCATA 59.956 55.000 0.00 0.00 45.40 2.74
2118 2177 0.248843 CTCTGTGGGTCTCTTCTGGC 59.751 60.000 0.00 0.00 0.00 4.85
2151 2210 2.124983 CCATCGTGCACTCCCTGG 60.125 66.667 16.19 11.75 0.00 4.45
2225 2284 1.116308 TTCACGTCAGGGAGTTCACA 58.884 50.000 0.00 0.00 0.00 3.58
2229 2288 3.139077 GTTGATTTCACGTCAGGGAGTT 58.861 45.455 0.00 0.00 0.00 3.01
2232 2291 1.790755 CGTTGATTTCACGTCAGGGA 58.209 50.000 0.00 0.00 0.00 4.20
2233 2292 0.165944 GCGTTGATTTCACGTCAGGG 59.834 55.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.