Multiple sequence alignment - TraesCS5B01G412300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G412300 chr5B 100.000 9158 0 0 1 9158 587119541 587128698 0.000000e+00 16912.0
1 TraesCS5B01G412300 chr5B 88.571 210 16 6 5759 5962 359142632 359142839 1.970000e-61 248.0
2 TraesCS5B01G412300 chr5B 97.059 68 2 0 3605 3672 97497351 97497418 2.090000e-21 115.0
3 TraesCS5B01G412300 chr5D 95.115 3050 113 21 5221 8260 479456810 479459833 0.000000e+00 4774.0
4 TraesCS5B01G412300 chr5D 91.435 3094 127 54 1 3039 479451447 479454457 0.000000e+00 4119.0
5 TraesCS5B01G412300 chr5D 91.463 1511 70 24 3036 4506 479454492 479455983 0.000000e+00 2021.0
6 TraesCS5B01G412300 chr5D 93.750 752 27 12 4475 5220 479455984 479456721 0.000000e+00 1110.0
7 TraesCS5B01G412300 chr5D 85.714 707 54 20 8261 8965 479459865 479460526 0.000000e+00 702.0
8 TraesCS5B01G412300 chr5D 89.313 131 6 4 8986 9108 479460510 479460640 3.420000e-34 158.0
9 TraesCS5B01G412300 chr5D 100.000 39 0 0 5638 5676 479457300 479457338 1.280000e-08 73.1
10 TraesCS5B01G412300 chr5A 83.786 3164 255 117 1 3034 598071092 598074127 0.000000e+00 2763.0
11 TraesCS5B01G412300 chr5A 92.562 1842 92 20 6445 8260 598077620 598079442 0.000000e+00 2601.0
12 TraesCS5B01G412300 chr5A 94.153 667 35 3 5755 6420 598076956 598077619 0.000000e+00 1013.0
13 TraesCS5B01G412300 chr5A 89.773 704 36 14 4544 5220 598075603 598076297 0.000000e+00 869.0
14 TraesCS5B01G412300 chr5A 86.242 785 60 18 3731 4467 598074824 598075608 0.000000e+00 808.0
15 TraesCS5B01G412300 chr5A 87.716 464 32 15 8261 8715 598079474 598079921 1.360000e-142 518.0
16 TraesCS5B01G412300 chr5A 91.935 310 14 8 5265 5573 598076391 598076690 3.060000e-114 424.0
17 TraesCS5B01G412300 chr5A 87.619 210 18 5 3386 3594 598074514 598074716 4.270000e-58 237.0
18 TraesCS5B01G412300 chr5A 87.195 164 12 4 8781 8944 598079930 598080084 2.630000e-40 178.0
19 TraesCS5B01G412300 chr5A 86.179 123 10 3 8993 9113 598080084 598080201 9.650000e-25 126.0
20 TraesCS5B01G412300 chr5A 91.525 59 4 1 4464 4521 439860382 439860324 7.620000e-11 80.5
21 TraesCS5B01G412300 chr5A 88.710 62 4 1 4460 4521 703658323 703658381 1.280000e-08 73.1
22 TraesCS5B01G412300 chr5A 96.875 32 1 0 9120 9151 598080197 598080228 5.000000e-03 54.7
23 TraesCS5B01G412300 chr3B 86.506 415 48 6 5820 6232 732153107 732153515 5.040000e-122 449.0
24 TraesCS5B01G412300 chr3B 83.150 273 28 8 6314 6576 22392470 22392734 5.530000e-57 233.0
25 TraesCS5B01G412300 chr2B 86.538 416 47 7 5820 6232 727216559 727216150 5.040000e-122 449.0
26 TraesCS5B01G412300 chr2B 86.265 415 48 7 5820 6232 733058650 733059057 8.440000e-120 442.0
27 TraesCS5B01G412300 chr2B 88.172 93 7 4 3603 3695 451826937 451826849 3.500000e-19 108.0
28 TraesCS5B01G412300 chr2B 82.418 91 9 4 4472 4559 331012793 331012707 1.280000e-08 73.1
29 TraesCS5B01G412300 chr7D 87.226 274 25 7 5757 6022 497016444 497016173 4.160000e-78 303.0
30 TraesCS5B01G412300 chr7D 97.059 68 2 0 3603 3670 236827448 236827381 2.090000e-21 115.0
31 TraesCS5B01G412300 chr7D 82.796 93 15 1 4462 4553 99461874 99461782 2.120000e-11 82.4
32 TraesCS5B01G412300 chr7D 96.774 31 1 0 4518 4548 120529706 120529736 1.700000e-02 52.8
33 TraesCS5B01G412300 chr2D 85.714 280 27 7 6314 6582 85829654 85829931 5.410000e-72 283.0
34 TraesCS5B01G412300 chr2D 93.701 127 7 1 5820 5946 85829398 85829523 1.210000e-43 189.0
35 TraesCS5B01G412300 chr2D 81.319 91 10 4 4472 4559 218045334 218045420 5.930000e-07 67.6
36 TraesCS5B01G412300 chr6A 88.073 218 26 0 5332 5549 506641109 506641326 9.120000e-65 259.0
37 TraesCS5B01G412300 chr6A 85.227 88 10 3 4463 4549 33260081 33260166 4.560000e-13 87.9
38 TraesCS5B01G412300 chr6D 85.845 219 29 2 5332 5549 365844333 365844550 1.990000e-56 231.0
39 TraesCS5B01G412300 chr6D 81.752 274 20 10 5757 6022 454986926 454986675 1.560000e-47 202.0
40 TraesCS5B01G412300 chr6D 95.714 70 3 0 3603 3672 221839897 221839966 7.520000e-21 113.0
41 TraesCS5B01G412300 chr6D 89.062 64 5 2 4457 4520 353217332 353217271 2.740000e-10 78.7
42 TraesCS5B01G412300 chr1D 97.143 70 2 0 3603 3672 483954619 483954550 1.620000e-22 119.0
43 TraesCS5B01G412300 chr7B 97.059 68 2 0 3603 3670 213463508 213463441 2.090000e-21 115.0
44 TraesCS5B01G412300 chr7B 95.714 70 3 0 3603 3672 566838806 566838875 7.520000e-21 113.0
45 TraesCS5B01G412300 chr4D 95.714 70 3 0 3603 3672 1168915 1168846 7.520000e-21 113.0
46 TraesCS5B01G412300 chr4D 96.774 31 1 0 4518 4548 6774284 6774314 1.700000e-02 52.8
47 TraesCS5B01G412300 chr6B 87.500 88 10 1 4463 4549 503536407 503536320 5.850000e-17 100.0
48 TraesCS5B01G412300 chr6B 100.000 30 0 0 2886 2915 680733014 680733043 1.000000e-03 56.5
49 TraesCS5B01G412300 chr3A 92.188 64 3 2 4460 4521 41615229 41615166 1.270000e-13 89.8
50 TraesCS5B01G412300 chr7A 89.231 65 2 1 4462 4521 101858549 101858485 9.860000e-10 76.8
51 TraesCS5B01G412300 chr7A 88.889 54 5 1 3383 3436 144654062 144654114 2.130000e-06 65.8
52 TraesCS5B01G412300 chrUn 81.111 90 15 2 4462 4551 134242290 134242377 4.590000e-08 71.3
53 TraesCS5B01G412300 chr3D 100.000 30 0 0 2886 2915 590222805 590222834 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G412300 chr5B 587119541 587128698 9157 False 16912.000000 16912 100.000000 1 9158 1 chr5B.!!$F3 9157
1 TraesCS5B01G412300 chr5D 479451447 479460640 9193 False 1851.014286 4774 92.398571 1 9108 7 chr5D.!!$F1 9107
2 TraesCS5B01G412300 chr5A 598071092 598080228 9136 False 871.972727 2763 89.457727 1 9151 11 chr5A.!!$F2 9150
3 TraesCS5B01G412300 chr2D 85829398 85829931 533 False 236.000000 283 89.707500 5820 6582 2 chr2D.!!$F2 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 648 0.037975 GAGTAACCGCCGTTCCTTCA 60.038 55.000 0.0 0.0 33.17 3.02 F
700 792 0.172578 TTCTCATCGGCATTCGTCGT 59.827 50.000 0.0 0.0 42.21 4.34 F
2148 2288 0.179012 TCCGTGGTCACCCCTTTTTC 60.179 55.000 0.0 0.0 0.00 2.29 F
3642 3940 0.187361 TAGCCTGCCCCAACTTGTTT 59.813 50.000 0.0 0.0 0.00 2.83 F
3665 3964 3.190744 GGGACTAAAGGCTTAGTTGTTGC 59.809 47.826 0.0 0.0 46.31 4.17 F
4955 5360 1.216710 CCTGGAGCTTCGTGAGGAC 59.783 63.158 0.0 0.0 0.00 3.85 F
5381 5901 2.380941 CATGCCTGTTGATTCCCATCA 58.619 47.619 0.0 0.0 37.67 3.07 F
6593 7264 1.133419 AGGTTTGCCTTAACGGGGAAA 60.133 47.619 0.0 0.0 44.18 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 2548 0.401356 TGCTGGCAGATCTGTTTGGA 59.599 50.000 23.38 11.87 0.00 3.53 R
2519 2669 0.690762 ACAAGGTCCAGCAATACGGT 59.309 50.000 0.00 0.00 0.00 4.83 R
3920 4240 2.447244 GCAGTCTGCTTGTCAGTAGT 57.553 50.000 17.89 0.00 43.32 2.73 R
4955 5360 1.003580 ACTATTATGCCATGCTCGGGG 59.996 52.381 0.00 0.00 0.00 5.73 R
5258 5778 2.488153 CAAACCCGAGGACCAATTCTTC 59.512 50.000 0.00 0.00 0.00 2.87 R
6422 7084 0.179056 AACTGGTTCTGTCGTGTGGG 60.179 55.000 0.00 0.00 0.00 4.61 R
6657 7328 1.343465 ACCTCACCCTACAAAGTGACG 59.657 52.381 0.00 0.00 38.07 4.35 R
8361 9092 0.518636 CGGAGTGAACCATGCAACAG 59.481 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 55 0.109319 ATCCCGTTTTGTTGCATCGC 60.109 50.000 0.00 0.00 0.00 4.58
51 56 2.080062 CCCGTTTTGTTGCATCGCG 61.080 57.895 0.00 0.00 0.00 5.87
52 57 1.369930 CCGTTTTGTTGCATCGCGT 60.370 52.632 5.77 0.00 0.00 6.01
53 58 0.110599 CCGTTTTGTTGCATCGCGTA 60.111 50.000 5.77 0.00 0.00 4.42
54 59 0.965014 CGTTTTGTTGCATCGCGTAC 59.035 50.000 5.77 0.00 0.00 3.67
55 60 0.965014 GTTTTGTTGCATCGCGTACG 59.035 50.000 11.84 11.84 42.01 3.67
56 61 0.723129 TTTTGTTGCATCGCGTACGC 60.723 50.000 29.83 29.83 39.84 4.42
57 62 1.832411 TTTGTTGCATCGCGTACGCA 61.832 50.000 36.44 24.53 42.06 5.24
58 63 2.275812 GTTGCATCGCGTACGCAC 60.276 61.111 36.44 23.18 42.06 5.34
92 116 2.203337 GCACACAGTGGCCTCCAA 60.203 61.111 3.32 0.00 34.18 3.53
98 122 2.578021 ACACAGTGGCCTCCAAGATTAT 59.422 45.455 3.32 0.00 34.18 1.28
230 262 4.783734 GGCGTCGTGTACCGGACC 62.784 72.222 9.46 0.00 37.11 4.46
389 436 2.734606 TGCCGCCGATTAATTATTCTCG 59.265 45.455 5.96 5.94 0.00 4.04
392 439 2.734606 CGCCGATTAATTATTCTCGCCA 59.265 45.455 5.96 0.00 0.00 5.69
417 464 2.529136 CCACCACCTCCACCTCCA 60.529 66.667 0.00 0.00 0.00 3.86
424 479 2.283966 CTCCACCTCCACCTCCGT 60.284 66.667 0.00 0.00 0.00 4.69
425 480 2.283676 TCCACCTCCACCTCCGTC 60.284 66.667 0.00 0.00 0.00 4.79
426 481 2.283966 CCACCTCCACCTCCGTCT 60.284 66.667 0.00 0.00 0.00 4.18
444 499 1.547755 TCCTCCTCCTCCTCCCACT 60.548 63.158 0.00 0.00 0.00 4.00
464 519 1.345715 CCCCGCTTCATCTAACCCCT 61.346 60.000 0.00 0.00 0.00 4.79
465 520 0.106894 CCCGCTTCATCTAACCCCTC 59.893 60.000 0.00 0.00 0.00 4.30
466 521 1.123928 CCGCTTCATCTAACCCCTCT 58.876 55.000 0.00 0.00 0.00 3.69
519 578 1.459455 CGTGCCACCCACCAAATCAA 61.459 55.000 0.00 0.00 41.53 2.57
520 579 0.975887 GTGCCACCCACCAAATCAAT 59.024 50.000 0.00 0.00 38.55 2.57
577 648 0.037975 GAGTAACCGCCGTTCCTTCA 60.038 55.000 0.00 0.00 33.17 3.02
606 687 1.635663 CGGCGATTTCTGGAGCGTTT 61.636 55.000 0.00 0.00 0.00 3.60
609 690 1.156736 CGATTTCTGGAGCGTTTGGT 58.843 50.000 0.00 0.00 0.00 3.67
610 691 1.135972 CGATTTCTGGAGCGTTTGGTG 60.136 52.381 0.00 0.00 0.00 4.17
662 743 4.147449 GCATTTTGGCGGAGGGGC 62.147 66.667 0.00 0.00 42.69 5.80
663 744 2.362889 CATTTTGGCGGAGGGGCT 60.363 61.111 0.00 0.00 42.84 5.19
686 767 1.745115 CTCCGGCGGCATTTTCTCA 60.745 57.895 23.83 0.00 0.00 3.27
687 768 1.077787 TCCGGCGGCATTTTCTCAT 60.078 52.632 23.83 0.00 0.00 2.90
697 789 2.223340 GCATTTTCTCATCGGCATTCGT 60.223 45.455 0.00 0.00 40.32 3.85
699 791 1.277326 TTTCTCATCGGCATTCGTCG 58.723 50.000 0.00 0.00 43.21 5.12
700 792 0.172578 TTCTCATCGGCATTCGTCGT 59.827 50.000 0.00 0.00 42.21 4.34
702 794 0.999406 CTCATCGGCATTCGTCGTTT 59.001 50.000 0.00 0.00 42.21 3.60
703 795 0.996462 TCATCGGCATTCGTCGTTTC 59.004 50.000 0.00 0.00 42.21 2.78
708 800 1.298859 GGCATTCGTCGTTTCTGGCT 61.299 55.000 0.00 0.00 0.00 4.75
739 831 4.572571 GTTGGTGGTGGCCGTCCA 62.573 66.667 14.38 14.38 40.85 4.02
740 832 4.263572 TTGGTGGTGGCCGTCCAG 62.264 66.667 18.05 0.00 44.48 3.86
742 834 4.265056 GGTGGTGGCCGTCCAGTT 62.265 66.667 18.05 0.00 44.48 3.16
744 836 1.071814 GTGGTGGCCGTCCAGTTTA 59.928 57.895 18.05 0.00 44.48 2.01
756 863 1.499056 CAGTTTAGCAGCGGCAGTG 59.501 57.895 12.44 0.00 44.61 3.66
948 1055 4.625800 CTTCTGGGCGAAGGAAGG 57.374 61.111 0.00 0.00 44.37 3.46
949 1056 1.078143 CTTCTGGGCGAAGGAAGGG 60.078 63.158 0.00 0.00 44.37 3.95
950 1057 2.543067 CTTCTGGGCGAAGGAAGGGG 62.543 65.000 0.00 0.00 44.37 4.79
990 1108 1.673477 CCAAGCCCCAAAAGGAAGC 59.327 57.895 0.00 0.00 38.24 3.86
1054 1172 1.079405 GCCACGCTGCAGGTACTAA 60.079 57.895 17.12 0.00 36.02 2.24
1055 1173 0.462047 GCCACGCTGCAGGTACTAAT 60.462 55.000 17.12 0.00 36.02 1.73
1056 1174 1.290203 CCACGCTGCAGGTACTAATG 58.710 55.000 17.12 0.00 36.02 1.90
1085 1205 3.270027 TCCACTAATCCACTGCGATTTG 58.730 45.455 0.00 0.00 34.35 2.32
1086 1206 2.355756 CCACTAATCCACTGCGATTTGG 59.644 50.000 0.00 0.00 34.35 3.28
1151 1273 1.230635 GCGTGTGTGATCCTGCTGTT 61.231 55.000 0.00 0.00 0.00 3.16
1154 1276 1.537202 GTGTGTGATCCTGCTGTTTCC 59.463 52.381 0.00 0.00 0.00 3.13
1258 1380 2.755103 CAAGGTAAACATTCAGAGGCCC 59.245 50.000 0.00 0.00 0.00 5.80
1264 1386 1.821332 CATTCAGAGGCCCGGCTTC 60.821 63.158 13.62 13.62 34.80 3.86
1292 1417 5.161776 GGTTGGGCCATGAACTAGTAGTTC 61.162 50.000 28.78 28.78 44.63 3.01
1306 1431 1.274167 GTAGTTCGTGTCATGGGTGGA 59.726 52.381 0.00 0.00 0.00 4.02
1340 1476 4.279169 CCATGGATGGTAATGGTAGCAAAG 59.721 45.833 5.56 0.00 43.05 2.77
1541 1680 2.555757 GTGCTGCTCTGACCTTGAATTT 59.444 45.455 0.00 0.00 0.00 1.82
1554 1693 2.157834 TGAATTTGCTTGGCTTGCTG 57.842 45.000 4.23 0.00 0.00 4.41
1629 1768 6.467677 CACTGAATCTTTGGAGTTCCTAGAA 58.532 40.000 0.00 0.00 36.82 2.10
1638 1777 4.104086 TGGAGTTCCTAGAATGGTCATGT 58.896 43.478 0.00 0.00 36.82 3.21
2098 2238 2.159338 TCCGCTCTACAACCGTGTTATC 60.159 50.000 0.00 0.00 39.30 1.75
2099 2239 2.159282 CCGCTCTACAACCGTGTTATCT 60.159 50.000 0.00 0.00 39.30 1.98
2148 2288 0.179012 TCCGTGGTCACCCCTTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
2156 2296 4.081365 TGGTCACCCCTTTTTCAGAAAAAC 60.081 41.667 15.81 6.43 35.57 2.43
2205 2346 8.339714 CGTTTGAAAAATCTGTAGGTTAGTTGA 58.660 33.333 0.00 0.00 0.00 3.18
2413 2562 6.690194 ACTCATAAATCCAAACAGATCTGC 57.310 37.500 22.83 0.00 0.00 4.26
2512 2662 5.957842 ACATCATACACCGTGTTGAAAAT 57.042 34.783 9.98 0.00 0.00 1.82
2519 2669 9.000486 TCATACACCGTGTTGAAAATGTTAATA 58.000 29.630 9.98 0.00 0.00 0.98
2521 2671 6.440436 ACACCGTGTTGAAAATGTTAATACC 58.560 36.000 0.00 0.00 0.00 2.73
2684 2842 4.141574 TGCCCGGCTAGATACTAAAACAAT 60.142 41.667 11.61 0.00 0.00 2.71
2784 2942 6.220930 ACAACTCTAAACATAGCTGACGAAA 58.779 36.000 0.00 0.00 0.00 3.46
2914 3077 3.011566 TCTCCAACAGCAGACCAAAAA 57.988 42.857 0.00 0.00 0.00 1.94
2917 3080 4.405358 TCTCCAACAGCAGACCAAAAATTT 59.595 37.500 0.00 0.00 0.00 1.82
3025 3188 2.543848 GAGAAGCACACGAAACATGACA 59.456 45.455 0.00 0.00 0.00 3.58
3051 3271 1.226945 GGCGGGAAAAATGATGGCG 60.227 57.895 0.00 0.00 0.00 5.69
3143 3363 4.873129 CGGTGGCGGATCTGACGG 62.873 72.222 5.48 0.00 0.00 4.79
3217 3437 4.101448 ATGGCCGTGGGAGTGCTC 62.101 66.667 0.00 0.00 0.00 4.26
3287 3552 5.415221 TGGTTTTTGGTCAAATCACTTGTC 58.585 37.500 0.00 0.00 36.34 3.18
3306 3594 4.269183 TGTCGCAATATTTTGGTCAGGAT 58.731 39.130 0.00 0.00 33.22 3.24
3307 3595 5.432645 TGTCGCAATATTTTGGTCAGGATA 58.567 37.500 0.00 0.00 33.22 2.59
3308 3596 6.061441 TGTCGCAATATTTTGGTCAGGATAT 58.939 36.000 0.00 0.00 33.22 1.63
3340 3630 6.422344 TCGGTTGCCATATAGTTATTGGTA 57.578 37.500 0.00 0.00 0.00 3.25
3596 3891 8.969121 TTCAAACTGATGCTAATATGTTTGTG 57.031 30.769 13.56 0.00 42.46 3.33
3597 3892 8.334263 TCAAACTGATGCTAATATGTTTGTGA 57.666 30.769 13.56 0.00 42.46 3.58
3627 3925 3.134804 TCTTATGGGTTTCAGCTCTAGCC 59.865 47.826 0.00 0.00 43.38 3.93
3642 3940 0.187361 TAGCCTGCCCCAACTTGTTT 59.813 50.000 0.00 0.00 0.00 2.83
3665 3964 3.190744 GGGACTAAAGGCTTAGTTGTTGC 59.809 47.826 0.00 0.00 46.31 4.17
3669 3968 4.887655 ACTAAAGGCTTAGTTGTTGCTGTT 59.112 37.500 0.00 0.00 44.41 3.16
3728 4030 7.607607 GCAATGAGAACCATATGGATGTGTATA 59.392 37.037 28.77 6.90 38.94 1.47
3920 4240 8.052748 AGGTATGCATTCACTGGAATAGTTTTA 58.947 33.333 3.54 0.00 41.78 1.52
3970 4292 4.763793 AGCCATCATCAAATATGTACTGCC 59.236 41.667 0.00 0.00 0.00 4.85
4009 4331 5.809001 TGAAGGATCTCATAAGTTGCTGTT 58.191 37.500 0.00 0.00 0.00 3.16
4106 4428 9.452287 TCTTCAGATGTGATCATTGAATTAACA 57.548 29.630 0.00 0.00 34.31 2.41
4139 4461 5.036117 TCCTGAATTTCCTCTATTTCGGG 57.964 43.478 3.48 3.48 43.19 5.14
4228 4582 4.882842 TCACACTTAGTCAGTTGCCATA 57.117 40.909 0.00 0.00 30.92 2.74
4229 4583 5.420725 TCACACTTAGTCAGTTGCCATAT 57.579 39.130 0.00 0.00 30.92 1.78
4343 4709 8.553459 ACACGATGAGAAAAACTTGATCTTAT 57.447 30.769 0.00 0.00 0.00 1.73
4379 4745 8.579682 AGTTGACTGTTCAAATTGCTAAAATC 57.420 30.769 0.00 0.00 43.52 2.17
4449 4816 5.660864 TCATTCTTTTCAAAACTTCCCTGGT 59.339 36.000 0.00 0.00 0.00 4.00
4505 4872 9.439500 AATATAAGACGTTTTTGTAGGCTACAA 57.561 29.630 30.85 30.85 46.13 2.41
4519 4886 9.439500 TTGTAGGCTACAAAAACGTCTTATATT 57.561 29.630 32.00 0.00 44.95 1.28
4710 5114 5.250774 TCCTGGTCTTATGGTTCTTAGCTTT 59.749 40.000 0.00 0.00 0.00 3.51
4955 5360 1.216710 CCTGGAGCTTCGTGAGGAC 59.783 63.158 0.00 0.00 0.00 3.85
5023 5433 3.939066 ACACCTCTTCCTTCCGTATTTG 58.061 45.455 0.00 0.00 0.00 2.32
5154 5564 3.086818 TGCGCGTAATGTTATCTGCTA 57.913 42.857 8.43 0.00 0.00 3.49
5194 5626 5.695851 AGTTGACAATGAAAGGACATGAC 57.304 39.130 0.00 0.00 0.00 3.06
5200 5632 7.044181 TGACAATGAAAGGACATGACTAGATC 58.956 38.462 0.00 0.00 0.00 2.75
5381 5901 2.380941 CATGCCTGTTGATTCCCATCA 58.619 47.619 0.00 0.00 37.67 3.07
5387 5907 4.262592 GCCTGTTGATTCCCATCAGTTTTT 60.263 41.667 0.00 0.00 40.66 1.94
5730 6383 6.128956 GCAAGCTACGATCTTTAATCTGCTAG 60.129 42.308 0.00 0.00 0.00 3.42
5805 6458 4.464008 TGCTCTCCTTTTCAAGTTCACAT 58.536 39.130 0.00 0.00 0.00 3.21
6058 6711 5.339008 ACATTAATCGGTCACTTCTAGCA 57.661 39.130 0.00 0.00 0.00 3.49
6254 6907 5.124138 TCTCTCTGGTAATTCTCGAACTGTC 59.876 44.000 0.00 0.00 0.00 3.51
6323 6976 3.555956 CCAATACACTCAAGTATGCGGAC 59.444 47.826 0.00 0.00 35.02 4.79
6360 7013 9.295825 AGATAAAAACACATGTTCATGTAAGGA 57.704 29.630 16.44 3.45 37.25 3.36
6408 7069 6.428159 ACACACAAGGAGATGTTATTTCTGTC 59.572 38.462 0.00 0.00 0.00 3.51
6420 7082 9.643652 GATGTTATTTCTGTCGATTCATCTTTC 57.356 33.333 0.00 0.00 0.00 2.62
6421 7083 8.777865 TGTTATTTCTGTCGATTCATCTTTCT 57.222 30.769 0.00 0.00 0.00 2.52
6422 7084 8.873830 TGTTATTTCTGTCGATTCATCTTTCTC 58.126 33.333 0.00 0.00 0.00 2.87
6429 7091 2.604914 CGATTCATCTTTCTCCCACACG 59.395 50.000 0.00 0.00 0.00 4.49
6485 7155 7.017498 GCTAAAGTAGCCAGGTCTATTTTTC 57.983 40.000 13.09 6.19 45.95 2.29
6553 7224 5.408299 CGACAATCATGTTGAAGACTACCAA 59.592 40.000 12.90 0.00 42.66 3.67
6583 7254 3.078891 GAGAATCTCCAGGTTTGCCTT 57.921 47.619 0.00 0.00 44.18 4.35
6585 7256 4.589908 GAGAATCTCCAGGTTTGCCTTAA 58.410 43.478 0.00 0.00 44.18 1.85
6586 7257 4.336280 AGAATCTCCAGGTTTGCCTTAAC 58.664 43.478 0.00 0.00 44.18 2.01
6590 7261 1.248101 CCAGGTTTGCCTTAACGGGG 61.248 60.000 0.00 0.00 44.18 5.73
6593 7264 1.133419 AGGTTTGCCTTAACGGGGAAA 60.133 47.619 0.00 0.00 44.18 3.13
6594 7265 1.897133 GGTTTGCCTTAACGGGGAAAT 59.103 47.619 4.15 0.00 45.61 2.17
6595 7266 3.090790 GGTTTGCCTTAACGGGGAAATA 58.909 45.455 4.15 0.00 45.61 1.40
6636 7307 4.107127 ACCTATTTGTTGGCCACAGTAA 57.893 40.909 3.88 0.00 36.48 2.24
6655 7326 5.294356 AGTAAAATACTGAAGTGTGTCGCA 58.706 37.500 0.00 0.00 37.69 5.10
6657 7328 4.928661 AAATACTGAAGTGTGTCGCATC 57.071 40.909 0.00 0.00 0.00 3.91
6666 7337 0.858583 TGTGTCGCATCGTCACTTTG 59.141 50.000 15.00 0.00 43.67 2.77
6678 7349 2.224209 CGTCACTTTGTAGGGTGAGGTT 60.224 50.000 0.00 0.00 42.13 3.50
6681 7352 3.714798 TCACTTTGTAGGGTGAGGTTTCT 59.285 43.478 0.00 0.00 37.52 2.52
6717 7388 6.835174 AGAATTAGCTGATAAGGAGCATCAA 58.165 36.000 0.00 0.00 39.05 2.57
6720 7391 9.224267 GAATTAGCTGATAAGGAGCATCAATTA 57.776 33.333 0.00 0.00 39.05 1.40
6723 7394 6.599445 AGCTGATAAGGAGCATCAATTAAGT 58.401 36.000 0.00 0.00 39.05 2.24
6756 7427 5.012239 ACTGAAAAGGCTGCAGATAATGAA 58.988 37.500 20.43 0.00 33.94 2.57
6804 7475 3.476552 AGAAACTGGCGAGAATGTTCAA 58.523 40.909 1.44 0.00 0.00 2.69
6886 7557 1.699083 TGGAGCTCCAACATCTTGACA 59.301 47.619 33.41 4.79 44.35 3.58
6974 7645 4.118410 CAGACTGTAGCAGCTATTTCCTG 58.882 47.826 5.14 7.75 34.37 3.86
6995 7666 3.940852 TGCATCTATTGTCGCAACAGATT 59.059 39.130 9.63 0.00 36.57 2.40
7033 7704 2.408271 ATGTACAGTGCACTGATGGG 57.592 50.000 44.82 24.26 46.59 4.00
7127 7800 2.805671 TGACAACATCCGTGACAATGAC 59.194 45.455 2.41 0.00 0.00 3.06
7351 8024 2.912956 AGGCTTCTTGTGAGTAATCCCA 59.087 45.455 0.00 0.00 0.00 4.37
7386 8063 7.826252 AGTTTTCCATCCAGAATATGATATCCG 59.174 37.037 0.00 0.00 0.00 4.18
7518 8196 6.495181 CTCTAAGGAGCCTATGGAACATTCTA 59.505 42.308 0.00 0.00 36.40 2.10
7548 8226 3.691609 CAGGGCTAAACCAGAAACAGATC 59.308 47.826 0.00 0.00 42.05 2.75
7590 8268 2.010497 GGCTTAACTGTAGAAGGCTGC 58.990 52.381 16.78 0.00 43.10 5.25
7618 8296 1.137872 CTAGCTCGAGCCCTGATGTTT 59.862 52.381 32.94 14.19 43.38 2.83
7746 8424 6.418819 CCATGTCTGTTCTCAAAAATCAACAC 59.581 38.462 0.00 0.00 0.00 3.32
7785 8463 0.809241 GGCAGGAACATCTCAGCTCG 60.809 60.000 0.00 0.00 0.00 5.03
7839 8517 1.404047 GGTGATGGAAAACAATGGGCG 60.404 52.381 0.00 0.00 0.00 6.13
7845 8523 0.388520 GAAAACAATGGGCGAGTGGC 60.389 55.000 1.39 0.00 42.51 5.01
7875 8553 2.039084 GCCATACCATTCTACCCCAGAG 59.961 54.545 0.00 0.00 33.83 3.35
7966 8644 4.380550 GCAGGCAAAGGAAGGTAATTGTAC 60.381 45.833 0.00 0.00 0.00 2.90
8077 8762 6.978674 TCCATTAAGGAGGACATGTAGTAG 57.021 41.667 0.00 0.00 43.07 2.57
8125 8810 3.732212 TGGCATGAACTATGATCTTCCG 58.268 45.455 0.00 0.00 39.21 4.30
8169 8856 4.081198 AGAGAAAGGTAGAGGAAGCACATG 60.081 45.833 0.00 0.00 0.00 3.21
8188 8875 6.675026 CACATGAAGATTCAACAAGACACAT 58.325 36.000 0.00 0.00 41.13 3.21
8361 9092 3.879892 GGTCATTTTGGTGCCTCTAGATC 59.120 47.826 0.00 0.00 0.00 2.75
8365 9096 4.640771 TTTTGGTGCCTCTAGATCTGTT 57.359 40.909 5.18 0.00 0.00 3.16
8366 9097 3.616956 TTGGTGCCTCTAGATCTGTTG 57.383 47.619 5.18 0.00 0.00 3.33
8372 9105 2.158842 GCCTCTAGATCTGTTGCATGGT 60.159 50.000 5.18 0.00 0.00 3.55
8373 9106 3.683847 GCCTCTAGATCTGTTGCATGGTT 60.684 47.826 5.18 0.00 0.00 3.67
8380 9113 0.518636 CTGTTGCATGGTTCACTCCG 59.481 55.000 0.00 0.00 0.00 4.63
8384 9119 1.078848 GCATGGTTCACTCCGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
8468 9203 4.689071 TGTTCCCTTGTATAGTGTATGCG 58.311 43.478 0.00 0.00 0.00 4.73
8493 9228 0.323725 TGGGGCTGAATCTGCCTTTC 60.324 55.000 26.39 17.60 45.73 2.62
8520 9255 5.567423 GCCAAGAATCCTGTAAATTTGCTGT 60.567 40.000 7.80 0.00 0.00 4.40
8554 9289 2.446435 TCATCAAGCAAGTAAAGCCCC 58.554 47.619 0.00 0.00 0.00 5.80
8558 9293 1.244019 AAGCAAGTAAAGCCCCGCTG 61.244 55.000 0.00 0.00 39.62 5.18
8565 9300 4.947147 AAGCCCCGCTGCGAACAA 62.947 61.111 25.45 0.00 39.62 2.83
8581 9316 4.421058 CGAACAAGATGGTCTATGAACGA 58.579 43.478 0.00 0.00 30.24 3.85
8586 9321 6.644347 ACAAGATGGTCTATGAACGAAATCT 58.356 36.000 0.00 0.00 0.00 2.40
8588 9323 5.848406 AGATGGTCTATGAACGAAATCTCC 58.152 41.667 0.00 0.00 0.00 3.71
8710 9455 8.540492 GCATTATAATGATCCCGTTTACTATCG 58.460 37.037 26.22 0.00 38.70 2.92
8715 9460 5.130292 TGATCCCGTTTACTATCGAATCC 57.870 43.478 0.00 0.00 0.00 3.01
8717 9462 2.056577 CCCGTTTACTATCGAATCCGC 58.943 52.381 0.00 0.00 35.37 5.54
8721 9490 4.269363 CCGTTTACTATCGAATCCGCTTTT 59.731 41.667 0.00 0.00 35.37 2.27
8722 9491 5.220529 CCGTTTACTATCGAATCCGCTTTTT 60.221 40.000 0.00 0.00 35.37 1.94
8723 9492 5.894807 CGTTTACTATCGAATCCGCTTTTTC 59.105 40.000 0.00 0.00 35.37 2.29
8724 9493 5.978934 TTACTATCGAATCCGCTTTTTCC 57.021 39.130 0.00 0.00 35.37 3.13
8725 9494 4.138487 ACTATCGAATCCGCTTTTTCCT 57.862 40.909 0.00 0.00 35.37 3.36
8726 9495 5.272283 ACTATCGAATCCGCTTTTTCCTA 57.728 39.130 0.00 0.00 35.37 2.94
8727 9496 5.855045 ACTATCGAATCCGCTTTTTCCTAT 58.145 37.500 0.00 0.00 35.37 2.57
8728 9497 6.289064 ACTATCGAATCCGCTTTTTCCTATT 58.711 36.000 0.00 0.00 35.37 1.73
8729 9498 6.766467 ACTATCGAATCCGCTTTTTCCTATTT 59.234 34.615 0.00 0.00 35.37 1.40
8730 9499 5.890424 TCGAATCCGCTTTTTCCTATTTT 57.110 34.783 0.00 0.00 35.37 1.82
8731 9500 5.636837 TCGAATCCGCTTTTTCCTATTTTG 58.363 37.500 0.00 0.00 35.37 2.44
8732 9501 4.798387 CGAATCCGCTTTTTCCTATTTTGG 59.202 41.667 0.00 0.00 0.00 3.28
8733 9502 3.586100 TCCGCTTTTTCCTATTTTGGC 57.414 42.857 0.00 0.00 0.00 4.52
8734 9503 2.094957 TCCGCTTTTTCCTATTTTGGCG 60.095 45.455 0.00 0.00 40.83 5.69
8735 9504 2.352323 CCGCTTTTTCCTATTTTGGCGT 60.352 45.455 0.00 0.00 39.77 5.68
8736 9505 3.313690 CGCTTTTTCCTATTTTGGCGTT 58.686 40.909 0.00 0.00 37.21 4.84
8737 9506 3.738791 CGCTTTTTCCTATTTTGGCGTTT 59.261 39.130 0.00 0.00 37.21 3.60
8738 9507 4.375908 CGCTTTTTCCTATTTTGGCGTTTG 60.376 41.667 0.00 0.00 37.21 2.93
8739 9508 4.509970 GCTTTTTCCTATTTTGGCGTTTGT 59.490 37.500 0.00 0.00 0.00 2.83
8740 9509 5.007234 GCTTTTTCCTATTTTGGCGTTTGTT 59.993 36.000 0.00 0.00 0.00 2.83
8741 9510 6.457663 GCTTTTTCCTATTTTGGCGTTTGTTT 60.458 34.615 0.00 0.00 0.00 2.83
8742 9511 5.975410 TTTCCTATTTTGGCGTTTGTTTG 57.025 34.783 0.00 0.00 0.00 2.93
8743 9512 4.920640 TCCTATTTTGGCGTTTGTTTGA 57.079 36.364 0.00 0.00 0.00 2.69
8744 9513 4.612943 TCCTATTTTGGCGTTTGTTTGAC 58.387 39.130 0.00 0.00 0.00 3.18
8745 9514 4.098044 TCCTATTTTGGCGTTTGTTTGACA 59.902 37.500 0.00 0.00 0.00 3.58
8746 9515 4.987912 CCTATTTTGGCGTTTGTTTGACAT 59.012 37.500 0.00 0.00 0.00 3.06
8747 9516 4.792528 ATTTTGGCGTTTGTTTGACATG 57.207 36.364 0.00 0.00 0.00 3.21
8748 9517 2.949451 TTGGCGTTTGTTTGACATGT 57.051 40.000 0.00 0.00 0.00 3.21
8749 9518 2.949451 TGGCGTTTGTTTGACATGTT 57.051 40.000 0.00 0.00 0.00 2.71
8750 9519 3.238108 TGGCGTTTGTTTGACATGTTT 57.762 38.095 0.00 0.00 0.00 2.83
8751 9520 3.589988 TGGCGTTTGTTTGACATGTTTT 58.410 36.364 0.00 0.00 0.00 2.43
8752 9521 3.614616 TGGCGTTTGTTTGACATGTTTTC 59.385 39.130 0.00 0.00 0.00 2.29
8753 9522 3.301515 GGCGTTTGTTTGACATGTTTTCG 60.302 43.478 0.00 0.00 0.00 3.46
8754 9523 3.544285 GCGTTTGTTTGACATGTTTTCGA 59.456 39.130 0.00 0.00 0.00 3.71
8755 9524 4.545519 GCGTTTGTTTGACATGTTTTCGAC 60.546 41.667 0.00 0.00 0.00 4.20
8756 9525 4.791163 CGTTTGTTTGACATGTTTTCGACT 59.209 37.500 0.00 0.00 0.00 4.18
8757 9526 5.275234 CGTTTGTTTGACATGTTTTCGACTG 60.275 40.000 0.00 0.00 0.00 3.51
8758 9527 3.690422 TGTTTGACATGTTTTCGACTGC 58.310 40.909 0.00 0.00 0.00 4.40
8759 9528 3.127721 TGTTTGACATGTTTTCGACTGCA 59.872 39.130 0.00 0.00 0.00 4.41
8760 9529 4.202000 TGTTTGACATGTTTTCGACTGCAT 60.202 37.500 0.00 0.00 0.00 3.96
8761 9530 4.566545 TTGACATGTTTTCGACTGCATT 57.433 36.364 0.00 0.00 0.00 3.56
8762 9531 4.566545 TGACATGTTTTCGACTGCATTT 57.433 36.364 0.00 0.00 0.00 2.32
8763 9532 4.930963 TGACATGTTTTCGACTGCATTTT 58.069 34.783 0.00 0.00 0.00 1.82
8764 9533 5.347342 TGACATGTTTTCGACTGCATTTTT 58.653 33.333 0.00 0.00 0.00 1.94
8765 9534 5.458452 TGACATGTTTTCGACTGCATTTTTC 59.542 36.000 0.00 0.00 0.00 2.29
8766 9535 4.440758 ACATGTTTTCGACTGCATTTTTCG 59.559 37.500 0.00 0.00 0.00 3.46
8767 9536 4.022464 TGTTTTCGACTGCATTTTTCGT 57.978 36.364 0.00 0.00 34.35 3.85
8768 9537 4.032355 TGTTTTCGACTGCATTTTTCGTC 58.968 39.130 0.00 0.00 34.35 4.20
8769 9538 4.201871 TGTTTTCGACTGCATTTTTCGTCT 60.202 37.500 0.00 0.00 34.35 4.18
8770 9539 5.006844 TGTTTTCGACTGCATTTTTCGTCTA 59.993 36.000 0.00 0.00 34.35 2.59
8771 9540 4.640805 TTCGACTGCATTTTTCGTCTAC 57.359 40.909 0.00 0.00 34.35 2.59
8772 9541 3.909430 TCGACTGCATTTTTCGTCTACT 58.091 40.909 0.00 0.00 34.35 2.57
8773 9542 3.918591 TCGACTGCATTTTTCGTCTACTC 59.081 43.478 0.00 0.00 34.35 2.59
8774 9543 3.060895 CGACTGCATTTTTCGTCTACTCC 59.939 47.826 0.00 0.00 0.00 3.85
8775 9544 4.246458 GACTGCATTTTTCGTCTACTCCT 58.754 43.478 0.00 0.00 0.00 3.69
8776 9545 4.642429 ACTGCATTTTTCGTCTACTCCTT 58.358 39.130 0.00 0.00 0.00 3.36
8777 9546 5.063880 ACTGCATTTTTCGTCTACTCCTTT 58.936 37.500 0.00 0.00 0.00 3.11
8790 9559 5.464389 GTCTACTCCTTTTTACAGCGAAACA 59.536 40.000 0.00 0.00 0.00 2.83
8796 9565 5.099575 CCTTTTTACAGCGAAACACAAACT 58.900 37.500 0.00 0.00 0.00 2.66
8798 9567 3.684103 TTACAGCGAAACACAAACTGG 57.316 42.857 0.00 0.00 32.60 4.00
8852 9621 4.218200 TGCTCAAACACCGATGAAATGAAT 59.782 37.500 0.00 0.00 0.00 2.57
8873 9642 2.071688 AGAACAGCGAGCAGTTACAG 57.928 50.000 5.86 0.00 0.00 2.74
8961 9730 3.801307 TGTCGGGAGCAGTATAGGATA 57.199 47.619 0.00 0.00 0.00 2.59
8962 9731 3.687125 TGTCGGGAGCAGTATAGGATAG 58.313 50.000 0.00 0.00 0.00 2.08
8963 9732 3.329814 TGTCGGGAGCAGTATAGGATAGA 59.670 47.826 0.00 0.00 0.00 1.98
8964 9733 4.018324 TGTCGGGAGCAGTATAGGATAGAT 60.018 45.833 0.00 0.00 0.00 1.98
8965 9734 4.951094 GTCGGGAGCAGTATAGGATAGATT 59.049 45.833 0.00 0.00 0.00 2.40
8966 9735 5.419471 GTCGGGAGCAGTATAGGATAGATTT 59.581 44.000 0.00 0.00 0.00 2.17
8967 9736 6.017192 TCGGGAGCAGTATAGGATAGATTTT 58.983 40.000 0.00 0.00 0.00 1.82
8968 9737 6.497259 TCGGGAGCAGTATAGGATAGATTTTT 59.503 38.462 0.00 0.00 0.00 1.94
9005 9774 7.888105 AGAATAGCAGTATAGGATAGATGGGA 58.112 38.462 0.00 0.00 0.00 4.37
9039 9812 2.792947 ATGGGCCGTGGTACTAGCG 61.793 63.158 0.00 0.00 0.00 4.26
9057 9830 4.247267 AGCGCTAACAACTTGTACTGTA 57.753 40.909 8.99 0.00 0.00 2.74
9062 9835 5.564259 CGCTAACAACTTGTACTGTAGGACT 60.564 44.000 0.00 0.00 0.00 3.85
9098 9871 6.183360 GGGATCTCATCTCATCTCATCTCATC 60.183 46.154 0.00 0.00 0.00 2.92
9113 9886 1.278413 CTCATCTGCGGATGGATGGAT 59.722 52.381 30.56 0.00 46.70 3.41
9114 9887 1.277273 TCATCTGCGGATGGATGGATC 59.723 52.381 30.56 0.00 46.70 3.36
9115 9888 1.002773 CATCTGCGGATGGATGGATCA 59.997 52.381 25.35 0.00 43.97 2.92
9116 9889 1.355112 TCTGCGGATGGATGGATCAT 58.645 50.000 0.00 0.00 0.00 2.45
9117 9890 1.002773 TCTGCGGATGGATGGATCATG 59.997 52.381 0.00 0.00 0.00 3.07
9118 9891 0.607217 TGCGGATGGATGGATCATGC 60.607 55.000 0.00 0.00 32.81 4.06
9119 9892 0.607217 GCGGATGGATGGATCATGCA 60.607 55.000 4.68 4.68 45.41 3.96
9147 9920 6.436261 ACGCAGATGATTCATTCATTCATTC 58.564 36.000 0.00 0.00 45.29 2.67
9151 9924 8.703336 GCAGATGATTCATTCATTCATTCATTG 58.297 33.333 0.00 0.00 45.29 2.82
9152 9925 9.965824 CAGATGATTCATTCATTCATTCATTGA 57.034 29.630 0.00 0.00 45.29 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.024579 CGGGATGAACAAAGGGTCGG 61.025 60.000 0.00 0.00 0.00 4.79
92 116 3.845178 TCGTCTCGTGCAAACATAATCT 58.155 40.909 0.00 0.00 0.00 2.40
98 122 0.939577 GCTCTCGTCTCGTGCAAACA 60.940 55.000 0.00 0.00 0.00 2.83
127 151 2.492090 CCGCCAGGTCTCTTCTCG 59.508 66.667 0.00 0.00 0.00 4.04
128 152 2.896443 CCCGCCAGGTCTCTTCTC 59.104 66.667 0.00 0.00 35.12 2.87
129 153 3.394836 GCCCGCCAGGTCTCTTCT 61.395 66.667 0.00 0.00 38.26 2.85
130 154 3.672295 CTGCCCGCCAGGTCTCTTC 62.672 68.421 0.00 0.00 37.93 2.87
131 155 3.710722 CTGCCCGCCAGGTCTCTT 61.711 66.667 0.00 0.00 37.93 2.85
156 184 4.577246 CAGCGCGCCCCTCTCTAC 62.577 72.222 30.33 0.00 0.00 2.59
389 436 1.544246 GAGGTGGTGGTTTAATGTGGC 59.456 52.381 0.00 0.00 0.00 5.01
392 439 2.490168 GGTGGAGGTGGTGGTTTAATGT 60.490 50.000 0.00 0.00 0.00 2.71
417 464 1.928714 GAGGAGGAGGAGACGGAGGT 61.929 65.000 0.00 0.00 0.00 3.85
424 479 1.230650 TGGGAGGAGGAGGAGGAGA 60.231 63.158 0.00 0.00 0.00 3.71
425 480 1.075600 GTGGGAGGAGGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
426 481 1.547755 AGTGGGAGGAGGAGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
444 499 1.342672 GGGGTTAGATGAAGCGGGGA 61.343 60.000 0.00 0.00 36.33 4.81
464 519 1.404391 GTACGAAGCGGATTCAGGAGA 59.596 52.381 6.81 0.00 37.83 3.71
465 520 1.841450 GTACGAAGCGGATTCAGGAG 58.159 55.000 6.81 0.00 37.83 3.69
466 521 0.099968 CGTACGAAGCGGATTCAGGA 59.900 55.000 10.44 0.00 37.83 3.86
553 624 0.108520 GAACGGCGGTTACTCCATCA 60.109 55.000 13.24 0.00 36.24 3.07
619 700 4.525949 GTAGCCGTTCCCGCTCCC 62.526 72.222 0.00 0.00 0.00 4.30
667 748 3.113386 GAGAAAATGCCGCCGGAGC 62.113 63.158 7.68 8.03 0.00 4.70
686 767 0.999406 CAGAAACGACGAATGCCGAT 59.001 50.000 0.00 0.00 41.76 4.18
687 768 1.011968 CCAGAAACGACGAATGCCGA 61.012 55.000 0.00 0.00 41.76 5.54
728 820 2.038837 GCTAAACTGGACGGCCACC 61.039 63.158 5.41 6.25 39.92 4.61
729 821 1.298859 CTGCTAAACTGGACGGCCAC 61.299 60.000 5.41 0.00 39.92 5.01
730 822 1.003839 CTGCTAAACTGGACGGCCA 60.004 57.895 11.16 11.16 43.47 5.36
732 824 2.740714 CGCTGCTAAACTGGACGGC 61.741 63.158 0.00 0.00 0.00 5.68
733 825 2.100631 CCGCTGCTAAACTGGACGG 61.101 63.158 0.00 0.00 0.00 4.79
734 826 2.740714 GCCGCTGCTAAACTGGACG 61.741 63.158 0.00 0.00 33.53 4.79
735 827 1.639298 CTGCCGCTGCTAAACTGGAC 61.639 60.000 0.70 0.00 38.71 4.02
736 828 1.375908 CTGCCGCTGCTAAACTGGA 60.376 57.895 0.70 0.00 38.71 3.86
737 829 1.672356 ACTGCCGCTGCTAAACTGG 60.672 57.895 0.70 0.00 38.71 4.00
738 830 1.499056 CACTGCCGCTGCTAAACTG 59.501 57.895 0.70 0.00 38.71 3.16
739 831 1.672356 CCACTGCCGCTGCTAAACT 60.672 57.895 0.70 0.00 38.71 2.66
740 832 2.870372 CCACTGCCGCTGCTAAAC 59.130 61.111 0.70 0.00 38.71 2.01
741 833 3.055719 GCCACTGCCGCTGCTAAA 61.056 61.111 0.70 0.00 38.71 1.85
899 1006 2.027073 CTAGCACAAGCCAACGCGA 61.027 57.895 15.93 0.00 43.56 5.87
1054 1172 3.072184 GTGGATTAGTGGAGAGGATGCAT 59.928 47.826 0.00 0.00 0.00 3.96
1055 1173 2.435805 GTGGATTAGTGGAGAGGATGCA 59.564 50.000 0.00 0.00 0.00 3.96
1056 1174 2.703007 AGTGGATTAGTGGAGAGGATGC 59.297 50.000 0.00 0.00 0.00 3.91
1085 1205 4.481195 TGGAACAGAAGTGCAGCC 57.519 55.556 0.00 0.00 0.00 4.85
1151 1273 2.274645 CGGCCACCTGCAAATGGAA 61.275 57.895 18.07 0.00 43.89 3.53
1154 1276 1.804396 TTGACGGCCACCTGCAAATG 61.804 55.000 2.24 0.00 43.89 2.32
1258 1380 1.079888 GCCCAACCAAATGAAGCCG 60.080 57.895 0.00 0.00 0.00 5.52
1292 1417 1.819928 TTCAATCCACCCATGACACG 58.180 50.000 0.00 0.00 0.00 4.49
1340 1476 6.590292 ACATACAAGCACAACATCACTACTAC 59.410 38.462 0.00 0.00 0.00 2.73
1427 1566 2.173996 TCTTTTCTCCTTGGTCCGGTTT 59.826 45.455 0.00 0.00 0.00 3.27
1530 1669 3.062042 CAAGCCAAGCAAATTCAAGGTC 58.938 45.455 0.00 0.00 0.00 3.85
1541 1680 1.036481 TGTCAACAGCAAGCCAAGCA 61.036 50.000 0.00 0.00 0.00 3.91
1554 1693 2.954318 AGCATATGAGCCCATTGTCAAC 59.046 45.455 6.97 0.00 34.31 3.18
1584 1723 9.325198 TCAGTGCAGGTATAATATAAACACTTG 57.675 33.333 0.00 0.00 33.82 3.16
1593 1732 8.439971 TCCAAAGATTCAGTGCAGGTATAATAT 58.560 33.333 0.00 0.00 0.00 1.28
1594 1733 7.801104 TCCAAAGATTCAGTGCAGGTATAATA 58.199 34.615 0.00 0.00 0.00 0.98
1596 1735 6.061022 TCCAAAGATTCAGTGCAGGTATAA 57.939 37.500 0.00 0.00 0.00 0.98
1598 1737 4.018960 ACTCCAAAGATTCAGTGCAGGTAT 60.019 41.667 0.00 0.00 0.00 2.73
1599 1738 3.327757 ACTCCAAAGATTCAGTGCAGGTA 59.672 43.478 0.00 0.00 0.00 3.08
1600 1739 2.107204 ACTCCAAAGATTCAGTGCAGGT 59.893 45.455 0.00 0.00 0.00 4.00
1601 1740 2.787994 ACTCCAAAGATTCAGTGCAGG 58.212 47.619 0.00 0.00 0.00 4.85
1612 1751 4.844085 TGACCATTCTAGGAACTCCAAAGA 59.156 41.667 0.00 0.00 41.75 2.52
1616 1755 4.104086 ACATGACCATTCTAGGAACTCCA 58.896 43.478 0.00 0.00 41.75 3.86
1629 1768 5.263599 TCCTAAAATGCAAGACATGACCAT 58.736 37.500 0.00 0.00 39.60 3.55
1946 2086 6.371825 GGGTAAGTGGTGAAGATAAAGTTCAG 59.628 42.308 0.00 0.00 34.59 3.02
2098 2238 5.245526 ACAAGTGGTACTGGGTTAGAACTAG 59.754 44.000 0.00 0.00 0.00 2.57
2099 2239 5.149976 ACAAGTGGTACTGGGTTAGAACTA 58.850 41.667 0.00 0.00 0.00 2.24
2156 2296 5.003402 CGTTAACACAGCAGAAACAAGTTTG 59.997 40.000 6.39 0.00 32.11 2.93
2205 2346 9.768662 AAAATCTCAAAATAAATGCAGTGACTT 57.231 25.926 0.00 0.00 0.00 3.01
2399 2548 0.401356 TGCTGGCAGATCTGTTTGGA 59.599 50.000 23.38 11.87 0.00 3.53
2478 2627 4.882447 GTGTATGATGTTACACGACTTGC 58.118 43.478 0.00 0.00 41.68 4.01
2500 2650 5.691815 ACGGTATTAACATTTTCAACACGG 58.308 37.500 0.00 0.00 0.00 4.94
2512 2662 4.162698 AGGTCCAGCAATACGGTATTAACA 59.837 41.667 12.73 0.00 0.00 2.41
2519 2669 0.690762 ACAAGGTCCAGCAATACGGT 59.309 50.000 0.00 0.00 0.00 4.83
2521 2671 2.002586 CTGACAAGGTCCAGCAATACG 58.997 52.381 0.00 0.00 0.00 3.06
2734 2892 8.534333 TGAGCAGTTATAGTTGTACAGAAAAG 57.466 34.615 0.00 0.00 0.00 2.27
2754 2912 5.409520 CAGCTATGTTTAGAGTTGTTGAGCA 59.590 40.000 0.00 0.00 0.00 4.26
2784 2942 3.256631 GCAGGTCATCAAAACAGTGGAAT 59.743 43.478 0.00 0.00 0.00 3.01
2868 3029 7.952671 TGCTCTTAGTCCAACCTATTACATAG 58.047 38.462 0.00 0.00 0.00 2.23
2917 3080 2.131776 AACCGAGTTTTTGGTCACCA 57.868 45.000 0.00 0.00 40.40 4.17
2919 3082 3.004002 CCCTAAACCGAGTTTTTGGTCAC 59.996 47.826 7.22 0.00 40.40 3.67
2921 3084 2.555325 CCCCTAAACCGAGTTTTTGGTC 59.445 50.000 7.22 0.00 40.40 4.02
2922 3085 2.091720 ACCCCTAAACCGAGTTTTTGGT 60.092 45.455 7.22 8.52 43.33 3.67
2924 3087 2.295070 CCACCCCTAAACCGAGTTTTTG 59.705 50.000 7.22 2.76 37.01 2.44
2925 3088 2.175284 TCCACCCCTAAACCGAGTTTTT 59.825 45.455 7.22 0.00 37.01 1.94
2933 3096 2.249309 TCTCTCTCCACCCCTAAACC 57.751 55.000 0.00 0.00 0.00 3.27
3084 3304 4.308458 CGACCCCAAGCACCACGA 62.308 66.667 0.00 0.00 0.00 4.35
3108 3328 3.465403 CCCCTGTCCCTGAGCTCG 61.465 72.222 9.64 3.88 0.00 5.03
3206 3426 4.394712 CACCCCGAGCACTCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
3261 3526 6.371271 ACAAGTGATTTGACCAAAAACCAAAG 59.629 34.615 0.00 0.00 39.21 2.77
3287 3552 9.743057 TTTTTATATCCTGACCAAAATATTGCG 57.257 29.630 0.00 0.00 35.10 4.85
3315 3603 5.529800 ACCAATAACTATATGGCAACCGAAC 59.470 40.000 0.00 0.00 0.00 3.95
3316 3604 5.686753 ACCAATAACTATATGGCAACCGAA 58.313 37.500 0.00 0.00 0.00 4.30
3317 3605 5.298989 ACCAATAACTATATGGCAACCGA 57.701 39.130 0.00 0.00 0.00 4.69
3322 3612 6.778821 ACAGCATACCAATAACTATATGGCA 58.221 36.000 0.00 0.00 0.00 4.92
3571 3863 8.791675 TCACAAACATATTAGCATCAGTTTGAA 58.208 29.630 18.96 7.05 45.04 2.69
3596 3891 9.377312 GAGCTGAAACCCATAAGATCTATTATC 57.623 37.037 0.00 0.00 0.00 1.75
3597 3892 9.110382 AGAGCTGAAACCCATAAGATCTATTAT 57.890 33.333 0.00 0.00 33.84 1.28
3599 3894 7.385894 AGAGCTGAAACCCATAAGATCTATT 57.614 36.000 0.00 0.00 33.84 1.73
3642 3940 4.394729 CAACAACTAAGCCTTTAGTCCCA 58.605 43.478 0.00 0.00 46.75 4.37
3645 3944 4.515567 ACAGCAACAACTAAGCCTTTAGTC 59.484 41.667 0.00 0.00 46.75 2.59
3649 3948 3.447229 ACAACAGCAACAACTAAGCCTTT 59.553 39.130 0.00 0.00 0.00 3.11
3728 4030 3.206150 ACGACAAGAACACAGCATTTCT 58.794 40.909 0.00 0.00 33.32 2.52
3802 4121 3.872511 TCTTATAAACGTCCTGCGGAA 57.127 42.857 0.00 0.00 46.52 4.30
3804 4123 6.780706 AATATTCTTATAAACGTCCTGCGG 57.219 37.500 0.00 0.00 46.52 5.69
3920 4240 2.447244 GCAGTCTGCTTGTCAGTAGT 57.553 50.000 17.89 0.00 43.32 2.73
3970 4292 5.201713 TCCTTCAGAACTGTGAGTGTAAG 57.798 43.478 1.73 0.00 0.00 2.34
4195 4549 7.806960 ACTGACTAAGTGTGAAGTAAATACGAC 59.193 37.037 0.00 0.00 37.88 4.34
4197 4551 8.425491 CAACTGACTAAGTGTGAAGTAAATACG 58.575 37.037 0.00 0.00 39.81 3.06
4343 4709 6.599356 TGAACAGTCAACTACTTATAGCCA 57.401 37.500 0.00 0.00 35.76 4.75
4357 4723 8.816144 GTTTGATTTTAGCAATTTGAACAGTCA 58.184 29.630 0.00 0.00 0.00 3.41
4449 4816 6.363065 ACGGAGGTAGTATATCAGTTCTTCA 58.637 40.000 0.00 0.00 0.00 3.02
4517 4884 9.765795 CTACCTCCGTCTCAAAATATAAGAAAT 57.234 33.333 0.00 0.00 0.00 2.17
4518 4885 8.755977 ACTACCTCCGTCTCAAAATATAAGAAA 58.244 33.333 0.00 0.00 0.00 2.52
4519 4886 8.302515 ACTACCTCCGTCTCAAAATATAAGAA 57.697 34.615 0.00 0.00 0.00 2.52
4627 5031 4.445453 CTGCAGAATTACATACAGCAGGA 58.555 43.478 8.42 0.00 42.99 3.86
4710 5114 8.809159 TTTTTATTTGATCAAAGATTGTGCGA 57.191 26.923 24.17 2.36 33.32 5.10
4955 5360 1.003580 ACTATTATGCCATGCTCGGGG 59.996 52.381 0.00 0.00 0.00 5.73
5023 5433 7.867909 GGCATTTATCTTATTAGCAGGGAAAAC 59.132 37.037 0.00 0.00 0.00 2.43
5154 5564 9.890629 TTGTCAACTTATCAGCTACTTGAATAT 57.109 29.630 0.00 0.00 0.00 1.28
5194 5626 8.778358 ACTTAAAAGCACAACAAGAAGATCTAG 58.222 33.333 0.00 0.00 0.00 2.43
5200 5632 4.970003 CCGACTTAAAAGCACAACAAGAAG 59.030 41.667 0.00 0.00 0.00 2.85
5258 5778 2.488153 CAAACCCGAGGACCAATTCTTC 59.512 50.000 0.00 0.00 0.00 2.87
5387 5907 9.770097 TTTGAACATCCAAATTTAGTTTATGCA 57.230 25.926 0.00 0.00 31.73 3.96
5416 5936 5.885912 TGCTGAATGGACCTAGGAAAATAAC 59.114 40.000 17.98 1.89 0.00 1.89
5805 6458 6.872020 GTCTTACAGTAATTTCCAGTACAGCA 59.128 38.462 0.00 0.00 0.00 4.41
6254 6907 4.794981 GCTGGTGATATTGTGGCAATCATG 60.795 45.833 3.14 0.00 32.60 3.07
6323 6976 4.693566 TGTGTTTTTATCTCCTTAGCACGG 59.306 41.667 0.00 0.00 0.00 4.94
6360 7013 3.251004 GCACTCGACCAAAAGAAATGACT 59.749 43.478 0.00 0.00 0.00 3.41
6394 7055 9.643652 GAAAGATGAATCGACAGAAATAACATC 57.356 33.333 0.00 0.00 34.01 3.06
6408 7069 2.604914 CGTGTGGGAGAAAGATGAATCG 59.395 50.000 0.00 0.00 0.00 3.34
6420 7082 0.319900 CTGGTTCTGTCGTGTGGGAG 60.320 60.000 0.00 0.00 0.00 4.30
6421 7083 1.046472 ACTGGTTCTGTCGTGTGGGA 61.046 55.000 0.00 0.00 0.00 4.37
6422 7084 0.179056 AACTGGTTCTGTCGTGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
6429 7091 6.920569 TTCAGAAAAGTAACTGGTTCTGTC 57.079 37.500 16.61 0.00 44.70 3.51
6482 7152 7.610865 ACAGGAAAAAGAACAAACATCAGAAA 58.389 30.769 0.00 0.00 0.00 2.52
6485 7155 9.831737 CTATACAGGAAAAAGAACAAACATCAG 57.168 33.333 0.00 0.00 0.00 2.90
6553 7224 5.725490 ACCTGGAGATTCTCTATCATCCTT 58.275 41.667 13.22 0.00 35.59 3.36
6585 7256 8.105197 ACACTAGAAATTTACTTATTTCCCCGT 58.895 33.333 0.00 0.00 42.72 5.28
6586 7257 8.502105 ACACTAGAAATTTACTTATTTCCCCG 57.498 34.615 0.00 0.00 42.72 5.73
6608 7279 5.416326 TGTGGCCAACAAATAGGTATAACAC 59.584 40.000 7.24 0.00 35.24 3.32
6609 7280 5.571285 TGTGGCCAACAAATAGGTATAACA 58.429 37.500 7.24 0.00 35.24 2.41
6613 7284 4.316025 ACTGTGGCCAACAAATAGGTAT 57.684 40.909 7.24 0.00 38.67 2.73
6636 7307 3.367932 CGATGCGACACACTTCAGTATTT 59.632 43.478 0.00 0.00 0.00 1.40
6643 7314 2.809181 TGACGATGCGACACACTTC 58.191 52.632 0.00 0.00 0.00 3.01
6655 7326 2.233922 CCTCACCCTACAAAGTGACGAT 59.766 50.000 0.00 0.00 38.07 3.73
6657 7328 1.343465 ACCTCACCCTACAAAGTGACG 59.657 52.381 0.00 0.00 38.07 4.35
6666 7337 3.323979 TCAACTGAGAAACCTCACCCTAC 59.676 47.826 0.00 0.00 35.88 3.18
6693 7364 6.430962 TGATGCTCCTTATCAGCTAATTCT 57.569 37.500 0.00 0.00 37.79 2.40
6717 7388 8.573885 GCCTTTTCAGTAGGTTTTACACTTAAT 58.426 33.333 0.00 0.00 35.13 1.40
6720 7391 6.039382 CAGCCTTTTCAGTAGGTTTTACACTT 59.961 38.462 0.00 0.00 35.13 3.16
6723 7394 4.277423 GCAGCCTTTTCAGTAGGTTTTACA 59.723 41.667 0.00 0.00 35.13 2.41
6756 7427 5.819901 GCTCAAGACATTTAGCCAAGATAGT 59.180 40.000 0.00 0.00 30.78 2.12
6783 7454 3.126001 TGAACATTCTCGCCAGTTTCT 57.874 42.857 0.00 0.00 0.00 2.52
6792 7463 8.808529 AGATTTATACGTTCTTGAACATTCTCG 58.191 33.333 13.05 1.71 0.00 4.04
6804 7475 8.251721 AGTGCTTTCTGTAGATTTATACGTTCT 58.748 33.333 0.00 0.00 0.00 3.01
6974 7645 4.542662 AATCTGTTGCGACAATAGATGC 57.457 40.909 22.40 2.36 34.85 3.91
6995 7666 9.653287 CTGTACATAGTGTGGAATTTCTAAGAA 57.347 33.333 0.00 0.00 0.00 2.52
7033 7704 7.809806 CCTTCTCATTCACCTGAATACAAAAAC 59.190 37.037 0.14 0.00 42.41 2.43
7410 8088 7.201938 GCATTATTCATTCCCTGAAGGATTTCA 60.202 37.037 0.00 0.00 46.71 2.69
7411 8089 7.015001 AGCATTATTCATTCCCTGAAGGATTTC 59.985 37.037 0.00 0.00 46.71 2.17
7412 8090 6.842807 AGCATTATTCATTCCCTGAAGGATTT 59.157 34.615 0.00 0.00 46.71 2.17
7518 8196 3.785887 TCTGGTTTAGCCCTGTTCCATAT 59.214 43.478 0.00 0.00 36.04 1.78
7548 8226 0.807496 GCTTAGCAGCCAACTTCAGG 59.193 55.000 0.00 0.00 40.61 3.86
7590 8268 1.522580 GCTCGAGCTAGGCAAAGGG 60.523 63.158 29.88 0.00 38.21 3.95
7618 8296 2.742116 GCCTTCCATGGGGCGTAGA 61.742 63.158 15.31 0.00 38.91 2.59
7746 8424 1.264557 CTACAGATGGTAGGCGTCTCG 59.735 57.143 0.00 0.00 44.77 4.04
7785 8463 3.126831 GCAGCCAGACATCATGTAGTAC 58.873 50.000 0.00 0.00 0.00 2.73
7817 8495 2.255406 CCCATTGTTTTCCATCACCCA 58.745 47.619 0.00 0.00 0.00 4.51
7818 8496 1.066215 GCCCATTGTTTTCCATCACCC 60.066 52.381 0.00 0.00 0.00 4.61
7845 8523 0.746563 AATGGTATGGCGTTGACCCG 60.747 55.000 0.00 0.00 31.80 5.28
7847 8525 2.038387 AGAATGGTATGGCGTTGACC 57.962 50.000 0.00 0.00 0.00 4.02
7875 8553 1.267228 CGATCGCTCGCTTTTCGTC 59.733 57.895 0.26 0.00 38.20 4.20
7932 8610 0.667993 TTTGCCTGCTGAAACCTTCG 59.332 50.000 0.00 0.00 0.00 3.79
7966 8644 4.456911 TGCAATTTGCTTGTAGAAGAGAGG 59.543 41.667 21.19 0.00 45.31 3.69
8077 8762 8.515414 AGATTAAAAATGTTGCCACTTAGACTC 58.485 33.333 0.00 0.00 0.00 3.36
8120 8805 2.159627 CACGAATCCTGGAAAACGGAAG 59.840 50.000 18.89 9.08 32.12 3.46
8125 8810 2.427506 AGAGCACGAATCCTGGAAAAC 58.572 47.619 0.00 0.00 0.00 2.43
8169 8856 6.203530 TGACTCATGTGTCTTGTTGAATCTTC 59.796 38.462 24.08 0.00 37.79 2.87
8207 8907 4.256920 GGTATTATAGCCATGTCAGCTGG 58.743 47.826 15.13 0.00 41.71 4.85
8361 9092 0.518636 CGGAGTGAACCATGCAACAG 59.481 55.000 0.00 0.00 0.00 3.16
8365 9096 1.375908 GAGCGGAGTGAACCATGCA 60.376 57.895 0.00 0.00 0.00 3.96
8366 9097 0.674895 AAGAGCGGAGTGAACCATGC 60.675 55.000 0.00 0.00 0.00 4.06
8372 9105 1.961394 ACTGTACAAGAGCGGAGTGAA 59.039 47.619 0.00 0.00 0.00 3.18
8373 9106 1.617322 ACTGTACAAGAGCGGAGTGA 58.383 50.000 0.00 0.00 0.00 3.41
8380 9113 6.679843 AGACTAACAACTACTGTACAAGAGC 58.320 40.000 0.00 0.00 37.23 4.09
8384 9119 7.002879 AGGAGAGACTAACAACTACTGTACAA 58.997 38.462 0.00 0.00 37.23 2.41
8468 9203 1.457346 CAGATTCAGCCCCAACAGAC 58.543 55.000 0.00 0.00 0.00 3.51
8493 9228 2.122783 TTTACAGGATTCTTGGCCCG 57.877 50.000 0.00 0.00 0.00 6.13
8520 9255 4.041567 TGCTTGATGAAGGGTTAAGAGTCA 59.958 41.667 0.00 0.00 0.00 3.41
8554 9289 1.016130 AGACCATCTTGTTCGCAGCG 61.016 55.000 9.06 9.06 0.00 5.18
8558 9293 3.000322 CGTTCATAGACCATCTTGTTCGC 60.000 47.826 0.00 0.00 0.00 4.70
8565 9300 5.363868 TGGAGATTTCGTTCATAGACCATCT 59.636 40.000 0.00 0.00 0.00 2.90
8567 9302 5.129485 ACTGGAGATTTCGTTCATAGACCAT 59.871 40.000 0.00 0.00 0.00 3.55
8612 9347 9.010029 TCATCTGTTGAAATTTTCCTAGGTAAC 57.990 33.333 9.08 4.26 0.00 2.50
8710 9455 4.566759 GCCAAAATAGGAAAAAGCGGATTC 59.433 41.667 0.00 0.00 0.00 2.52
8717 9462 6.597262 AACAAACGCCAAAATAGGAAAAAG 57.403 33.333 0.00 0.00 0.00 2.27
8721 9490 5.044558 GTCAAACAAACGCCAAAATAGGAA 58.955 37.500 0.00 0.00 0.00 3.36
8722 9491 4.098044 TGTCAAACAAACGCCAAAATAGGA 59.902 37.500 0.00 0.00 0.00 2.94
8723 9492 4.363999 TGTCAAACAAACGCCAAAATAGG 58.636 39.130 0.00 0.00 0.00 2.57
8724 9493 5.461737 ACATGTCAAACAAACGCCAAAATAG 59.538 36.000 0.00 0.00 0.00 1.73
8725 9494 5.352284 ACATGTCAAACAAACGCCAAAATA 58.648 33.333 0.00 0.00 0.00 1.40
8726 9495 4.187694 ACATGTCAAACAAACGCCAAAAT 58.812 34.783 0.00 0.00 0.00 1.82
8727 9496 3.589988 ACATGTCAAACAAACGCCAAAA 58.410 36.364 0.00 0.00 0.00 2.44
8728 9497 3.238108 ACATGTCAAACAAACGCCAAA 57.762 38.095 0.00 0.00 0.00 3.28
8729 9498 2.949451 ACATGTCAAACAAACGCCAA 57.051 40.000 0.00 0.00 0.00 4.52
8730 9499 2.949451 AACATGTCAAACAAACGCCA 57.051 40.000 0.00 0.00 0.00 5.69
8731 9500 3.301515 CGAAAACATGTCAAACAAACGCC 60.302 43.478 0.00 0.00 0.00 5.68
8732 9501 3.544285 TCGAAAACATGTCAAACAAACGC 59.456 39.130 0.00 0.00 0.00 4.84
8733 9502 4.791163 AGTCGAAAACATGTCAAACAAACG 59.209 37.500 0.00 0.00 0.00 3.60
8734 9503 5.498542 GCAGTCGAAAACATGTCAAACAAAC 60.499 40.000 0.00 0.00 0.00 2.93
8735 9504 4.560819 GCAGTCGAAAACATGTCAAACAAA 59.439 37.500 0.00 0.00 0.00 2.83
8736 9505 4.101942 GCAGTCGAAAACATGTCAAACAA 58.898 39.130 0.00 0.00 0.00 2.83
8737 9506 3.127721 TGCAGTCGAAAACATGTCAAACA 59.872 39.130 0.00 0.00 0.00 2.83
8738 9507 3.690422 TGCAGTCGAAAACATGTCAAAC 58.310 40.909 0.00 0.00 0.00 2.93
8739 9508 4.566545 ATGCAGTCGAAAACATGTCAAA 57.433 36.364 0.00 0.00 0.00 2.69
8740 9509 4.566545 AATGCAGTCGAAAACATGTCAA 57.433 36.364 0.00 0.00 0.00 3.18
8741 9510 4.566545 AAATGCAGTCGAAAACATGTCA 57.433 36.364 0.00 0.00 0.00 3.58
8742 9511 5.386323 CGAAAAATGCAGTCGAAAACATGTC 60.386 40.000 0.00 0.00 36.92 3.06
8743 9512 4.440758 CGAAAAATGCAGTCGAAAACATGT 59.559 37.500 0.00 0.00 36.92 3.21
8744 9513 4.440758 ACGAAAAATGCAGTCGAAAACATG 59.559 37.500 15.93 0.00 38.16 3.21
8745 9514 4.606961 ACGAAAAATGCAGTCGAAAACAT 58.393 34.783 15.93 0.00 38.16 2.71
8746 9515 4.022464 ACGAAAAATGCAGTCGAAAACA 57.978 36.364 15.93 0.00 38.16 2.83
8747 9516 4.279659 AGACGAAAAATGCAGTCGAAAAC 58.720 39.130 15.93 6.83 38.53 2.43
8748 9517 4.545823 AGACGAAAAATGCAGTCGAAAA 57.454 36.364 15.93 0.00 38.53 2.29
8749 9518 4.748102 AGTAGACGAAAAATGCAGTCGAAA 59.252 37.500 15.93 1.95 38.53 3.46
8750 9519 4.304110 AGTAGACGAAAAATGCAGTCGAA 58.696 39.130 15.93 0.00 38.53 3.71
8751 9520 3.909430 AGTAGACGAAAAATGCAGTCGA 58.091 40.909 15.93 0.43 38.53 4.20
8752 9521 3.060895 GGAGTAGACGAAAAATGCAGTCG 59.939 47.826 9.51 9.51 38.53 4.18
8753 9522 4.246458 AGGAGTAGACGAAAAATGCAGTC 58.754 43.478 0.00 0.00 0.00 3.51
8754 9523 4.273148 AGGAGTAGACGAAAAATGCAGT 57.727 40.909 0.00 0.00 0.00 4.40
8755 9524 5.613358 AAAGGAGTAGACGAAAAATGCAG 57.387 39.130 0.00 0.00 0.00 4.41
8756 9525 6.385649 AAAAAGGAGTAGACGAAAAATGCA 57.614 33.333 0.00 0.00 0.00 3.96
8757 9526 7.357303 TGTAAAAAGGAGTAGACGAAAAATGC 58.643 34.615 0.00 0.00 0.00 3.56
8758 9527 7.534239 GCTGTAAAAAGGAGTAGACGAAAAATG 59.466 37.037 0.00 0.00 0.00 2.32
8759 9528 7.570691 CGCTGTAAAAAGGAGTAGACGAAAAAT 60.571 37.037 0.00 0.00 0.00 1.82
8760 9529 6.292488 CGCTGTAAAAAGGAGTAGACGAAAAA 60.292 38.462 0.00 0.00 0.00 1.94
8761 9530 5.176223 CGCTGTAAAAAGGAGTAGACGAAAA 59.824 40.000 0.00 0.00 0.00 2.29
8762 9531 4.682860 CGCTGTAAAAAGGAGTAGACGAAA 59.317 41.667 0.00 0.00 0.00 3.46
8763 9532 4.022935 TCGCTGTAAAAAGGAGTAGACGAA 60.023 41.667 0.00 0.00 0.00 3.85
8764 9533 3.503363 TCGCTGTAAAAAGGAGTAGACGA 59.497 43.478 0.00 0.00 0.00 4.20
8765 9534 3.829948 TCGCTGTAAAAAGGAGTAGACG 58.170 45.455 0.00 0.00 0.00 4.18
8766 9535 5.464389 TGTTTCGCTGTAAAAAGGAGTAGAC 59.536 40.000 0.00 0.00 0.00 2.59
8767 9536 5.464389 GTGTTTCGCTGTAAAAAGGAGTAGA 59.536 40.000 0.00 0.00 0.00 2.59
8768 9537 5.235616 TGTGTTTCGCTGTAAAAAGGAGTAG 59.764 40.000 0.00 0.00 0.00 2.57
8769 9538 5.117584 TGTGTTTCGCTGTAAAAAGGAGTA 58.882 37.500 0.00 0.00 0.00 2.59
8770 9539 3.942748 TGTGTTTCGCTGTAAAAAGGAGT 59.057 39.130 0.00 0.00 0.00 3.85
8771 9540 4.545823 TGTGTTTCGCTGTAAAAAGGAG 57.454 40.909 0.00 0.00 0.00 3.69
8772 9541 4.966965 TTGTGTTTCGCTGTAAAAAGGA 57.033 36.364 0.00 0.00 0.00 3.36
8773 9542 5.004345 CAGTTTGTGTTTCGCTGTAAAAAGG 59.996 40.000 0.00 0.00 0.00 3.11
8774 9543 5.004345 CCAGTTTGTGTTTCGCTGTAAAAAG 59.996 40.000 0.00 0.00 0.00 2.27
8775 9544 4.859798 CCAGTTTGTGTTTCGCTGTAAAAA 59.140 37.500 0.00 0.00 0.00 1.94
8776 9545 4.416620 CCAGTTTGTGTTTCGCTGTAAAA 58.583 39.130 0.00 0.00 0.00 1.52
8777 9546 3.181495 CCCAGTTTGTGTTTCGCTGTAAA 60.181 43.478 0.00 0.00 0.00 2.01
8790 9559 4.415596 TCATTTATTCAGGCCCAGTTTGT 58.584 39.130 0.00 0.00 0.00 2.83
8796 9565 2.511218 AGCTCTCATTTATTCAGGCCCA 59.489 45.455 0.00 0.00 0.00 5.36
8798 9567 4.260948 CGAAAGCTCTCATTTATTCAGGCC 60.261 45.833 0.00 0.00 0.00 5.19
8852 9621 3.005472 ACTGTAACTGCTCGCTGTTCTTA 59.995 43.478 15.80 5.30 38.64 2.10
8873 9642 0.238289 CCAGCAACGGTGATGTCAAC 59.762 55.000 18.67 0.00 39.62 3.18
8944 9713 5.923733 AAATCTATCCTATACTGCTCCCG 57.076 43.478 0.00 0.00 0.00 5.14
8977 9746 9.194972 CCATCTATCCTATACTGCTATTCTCAA 57.805 37.037 0.00 0.00 0.00 3.02
8978 9747 7.782168 CCCATCTATCCTATACTGCTATTCTCA 59.218 40.741 0.00 0.00 0.00 3.27
8979 9748 8.001875 TCCCATCTATCCTATACTGCTATTCTC 58.998 40.741 0.00 0.00 0.00 2.87
8980 9749 7.888105 TCCCATCTATCCTATACTGCTATTCT 58.112 38.462 0.00 0.00 0.00 2.40
8981 9750 8.001875 TCTCCCATCTATCCTATACTGCTATTC 58.998 40.741 0.00 0.00 0.00 1.75
8982 9751 7.888105 TCTCCCATCTATCCTATACTGCTATT 58.112 38.462 0.00 0.00 0.00 1.73
8983 9752 7.473041 TCTCCCATCTATCCTATACTGCTAT 57.527 40.000 0.00 0.00 0.00 2.97
8984 9753 6.910259 TCTCCCATCTATCCTATACTGCTA 57.090 41.667 0.00 0.00 0.00 3.49
8985 9754 5.805208 TCTCCCATCTATCCTATACTGCT 57.195 43.478 0.00 0.00 0.00 4.24
8986 9755 6.132658 TGATCTCCCATCTATCCTATACTGC 58.867 44.000 0.00 0.00 0.00 4.40
8987 9756 7.784073 ACATGATCTCCCATCTATCCTATACTG 59.216 40.741 0.00 0.00 0.00 2.74
8988 9757 7.784073 CACATGATCTCCCATCTATCCTATACT 59.216 40.741 0.00 0.00 0.00 2.12
8989 9758 7.563188 ACACATGATCTCCCATCTATCCTATAC 59.437 40.741 0.00 0.00 0.00 1.47
8990 9759 7.656354 ACACATGATCTCCCATCTATCCTATA 58.344 38.462 0.00 0.00 0.00 1.31
8991 9760 6.510296 ACACATGATCTCCCATCTATCCTAT 58.490 40.000 0.00 0.00 0.00 2.57
8998 9767 2.744166 CGCAACACATGATCTCCCATCT 60.744 50.000 0.00 0.00 0.00 2.90
9005 9774 0.736636 CCATGCGCAACACATGATCT 59.263 50.000 17.11 0.00 46.33 2.75
9029 9798 3.006110 ACAAGTTGTTAGCGCTAGTACCA 59.994 43.478 17.98 10.24 0.00 3.25
9039 9812 5.634020 CAGTCCTACAGTACAAGTTGTTAGC 59.366 44.000 14.90 5.40 0.00 3.09
9098 9871 1.450025 CATGATCCATCCATCCGCAG 58.550 55.000 0.00 0.00 0.00 5.18
9113 9886 0.178533 TCATCTGCGTCCATGCATGA 59.821 50.000 28.31 11.26 45.26 3.07
9114 9887 1.235724 ATCATCTGCGTCCATGCATG 58.764 50.000 20.19 20.19 45.26 4.06
9115 9888 1.878088 GAATCATCTGCGTCCATGCAT 59.122 47.619 0.00 0.00 45.26 3.96
9116 9889 1.302366 GAATCATCTGCGTCCATGCA 58.698 50.000 0.00 0.00 43.95 3.96
9117 9890 1.302366 TGAATCATCTGCGTCCATGC 58.698 50.000 0.00 0.00 0.00 4.06
9118 9891 3.562557 TGAATGAATCATCTGCGTCCATG 59.437 43.478 0.00 0.00 31.50 3.66
9119 9892 3.812262 TGAATGAATCATCTGCGTCCAT 58.188 40.909 0.00 0.00 31.50 3.41
9120 9893 3.264998 TGAATGAATCATCTGCGTCCA 57.735 42.857 0.00 0.00 31.50 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.