Multiple sequence alignment - TraesCS5B01G412200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G412200 chr5B 100.000 5995 0 0 1 5995 587074000 587068006 0.000000e+00 11071.0
1 TraesCS5B01G412200 chr5B 86.025 322 38 7 1 317 462562280 462561961 7.440000e-89 339.0
2 TraesCS5B01G412200 chr5B 96.739 92 2 1 4290 4381 482285951 482285861 1.040000e-32 152.0
3 TraesCS5B01G412200 chr5B 95.699 93 4 0 4289 4381 45261628 45261720 3.740000e-32 150.0
4 TraesCS5B01G412200 chr5B 95.699 93 4 0 4289 4381 441642837 441642929 3.740000e-32 150.0
5 TraesCS5B01G412200 chr5B 96.703 91 2 1 4291 4381 482285857 482285946 3.740000e-32 150.0
6 TraesCS5B01G412200 chr5B 88.496 113 9 4 5527 5636 13182784 13182895 3.770000e-27 134.0
7 TraesCS5B01G412200 chr5A 93.181 4062 174 44 306 4297 598010763 598006735 0.000000e+00 5871.0
8 TraesCS5B01G412200 chr5A 95.947 913 29 4 4380 5289 598006736 598005829 0.000000e+00 1474.0
9 TraesCS5B01G412200 chr5A 82.372 312 32 17 5482 5778 598005558 598005255 3.590000e-62 250.0
10 TraesCS5B01G412200 chr5A 93.617 94 4 2 5545 5636 10503299 10503392 8.100000e-29 139.0
11 TraesCS5B01G412200 chr5D 92.400 4066 171 51 292 4297 479362470 479358483 0.000000e+00 5670.0
12 TraesCS5B01G412200 chr5D 98.024 911 16 2 4380 5289 479358484 479357575 0.000000e+00 1581.0
13 TraesCS5B01G412200 chr5D 90.289 381 15 4 5356 5718 479357579 479357203 4.200000e-131 479.0
14 TraesCS5B01G412200 chr5D 89.583 192 16 2 5751 5938 479357214 479357023 2.160000e-59 241.0
15 TraesCS5B01G412200 chr4B 88.715 319 33 3 1 317 23829627 23829944 2.620000e-103 387.0
16 TraesCS5B01G412200 chr4B 86.478 318 36 4 1 317 414226591 414226902 5.750000e-90 342.0
17 TraesCS5B01G412200 chr7B 88.438 320 29 6 1 320 635102820 635102509 4.390000e-101 379.0
18 TraesCS5B01G412200 chr7B 90.435 115 7 4 4296 4407 194555207 194555094 1.350000e-31 148.0
19 TraesCS5B01G412200 chr7B 92.929 99 5 2 4292 4388 212777605 212777507 6.260000e-30 143.0
20 TraesCS5B01G412200 chr7B 92.708 96 3 3 5541 5635 500790059 500789967 1.050000e-27 135.0
21 TraesCS5B01G412200 chr7B 93.151 73 5 0 5286 5358 419032265 419032193 2.280000e-19 108.0
22 TraesCS5B01G412200 chr7B 90.123 81 7 1 5285 5365 153325007 153324928 2.960000e-18 104.0
23 TraesCS5B01G412200 chr3B 87.421 318 36 4 1 317 705561547 705561861 4.420000e-96 363.0
24 TraesCS5B01G412200 chr1B 87.742 310 30 5 12 317 573389033 573388728 7.390000e-94 355.0
25 TraesCS5B01G412200 chr1B 85.185 324 39 5 1 317 491978542 491978221 2.080000e-84 324.0
26 TraesCS5B01G412200 chr1B 91.346 104 4 5 5534 5636 661598548 661598449 2.910000e-28 137.0
27 TraesCS5B01G412200 chrUn 86.834 319 37 3 1 319 17893430 17893117 9.560000e-93 351.0
28 TraesCS5B01G412200 chr2B 85.489 317 40 3 1 317 26119523 26119833 5.790000e-85 326.0
29 TraesCS5B01G412200 chr2B 97.727 88 2 0 4294 4381 297439026 297438939 1.040000e-32 152.0
30 TraesCS5B01G412200 chr2B 93.000 100 6 1 4293 4391 798832829 798832928 1.740000e-30 145.0
31 TraesCS5B01G412200 chr4D 87.681 138 12 2 4145 4282 358699595 358699463 8.040000e-34 156.0
32 TraesCS5B01G412200 chr4D 84.000 75 12 0 5284 5358 63222949 63222875 8.330000e-09 73.1
33 TraesCS5B01G412200 chr2D 96.739 92 3 0 4291 4382 503441218 503441309 2.890000e-33 154.0
34 TraesCS5B01G412200 chr1D 91.837 98 6 2 5539 5636 475490081 475490176 1.050000e-27 135.0
35 TraesCS5B01G412200 chr1D 91.000 100 5 4 5537 5636 475656904 475656809 1.360000e-26 132.0
36 TraesCS5B01G412200 chr7D 89.091 110 9 3 5529 5635 496106854 496106745 3.770000e-27 134.0
37 TraesCS5B01G412200 chr3D 94.521 73 4 0 5286 5358 110398389 110398461 4.910000e-21 113.0
38 TraesCS5B01G412200 chr2A 95.745 47 2 0 5316 5362 12129662 12129616 6.440000e-10 76.8
39 TraesCS5B01G412200 chr6D 97.674 43 1 0 5316 5358 392274233 392274275 2.320000e-09 75.0
40 TraesCS5B01G412200 chr6D 97.674 43 1 0 5316 5358 443950174 443950216 2.320000e-09 75.0
41 TraesCS5B01G412200 chr4A 85.714 77 4 4 5282 5358 2553803 2553872 2.320000e-09 75.0
42 TraesCS5B01G412200 chr4A 86.301 73 3 3 5286 5358 2553872 2553807 8.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G412200 chr5B 587068006 587074000 5994 True 11071.000000 11071 100.000 1 5995 1 chr5B.!!$R3 5994
1 TraesCS5B01G412200 chr5A 598005255 598010763 5508 True 2531.666667 5871 90.500 306 5778 3 chr5A.!!$R1 5472
2 TraesCS5B01G412200 chr5D 479357023 479362470 5447 True 1992.750000 5670 92.574 292 5938 4 chr5D.!!$R1 5646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.039074 GAGAGGATATGGTCACGCGG 60.039 60.000 12.47 0.0 0.00 6.46 F
1548 1586 0.105246 AGGCTCTCCGGATCCTTGAT 60.105 55.000 3.57 0.0 34.77 2.57 F
2213 2251 0.469705 AACCTTGTCAAGCATGGGCA 60.470 50.000 7.09 0.0 44.22 5.36 F
2220 2258 1.001764 CAAGCATGGGCACTCTGGA 60.002 57.895 0.00 0.0 44.61 3.86 F
4113 4220 1.133025 CCCAAACACAAGATGGATCGC 59.867 52.381 0.00 0.0 36.27 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2009 1.000938 CTCACCAAGCAAAAGACCAGC 60.001 52.381 0.00 0.00 0.00 4.85 R
3208 3288 1.201647 AGCTTTACTGCATGCTGCTTG 59.798 47.619 22.92 10.85 45.31 4.01 R
4074 4181 2.939103 GGGAGATGATGTGGAAGTTTCG 59.061 50.000 0.00 0.00 0.00 3.46 R
4285 4393 3.531538 ACGTTGGGAGTATTATGCACAG 58.468 45.455 0.00 0.00 0.00 3.66 R
5337 5450 0.192566 ACTCCCTCCGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.669240 GACGGGGGAAAGAGTGGG 59.331 66.667 0.00 0.00 0.00 4.61
18 19 1.916777 GACGGGGGAAAGAGTGGGA 60.917 63.158 0.00 0.00 0.00 4.37
19 20 2.181445 GACGGGGGAAAGAGTGGGAC 62.181 65.000 0.00 0.00 0.00 4.46
20 21 2.669240 GGGGGAAAGAGTGGGACG 59.331 66.667 0.00 0.00 0.00 4.79
21 22 1.916777 GGGGGAAAGAGTGGGACGA 60.917 63.158 0.00 0.00 0.00 4.20
22 23 1.597461 GGGGAAAGAGTGGGACGAG 59.403 63.158 0.00 0.00 0.00 4.18
23 24 1.079057 GGGAAAGAGTGGGACGAGC 60.079 63.158 0.00 0.00 0.00 5.03
24 25 1.446272 GGAAAGAGTGGGACGAGCG 60.446 63.158 0.00 0.00 0.00 5.03
25 26 1.446272 GAAAGAGTGGGACGAGCGG 60.446 63.158 0.00 0.00 0.00 5.52
26 27 2.837371 GAAAGAGTGGGACGAGCGGG 62.837 65.000 0.00 0.00 0.00 6.13
27 28 3.881019 AAGAGTGGGACGAGCGGGA 62.881 63.158 0.00 0.00 0.00 5.14
28 29 3.827898 GAGTGGGACGAGCGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
34 35 4.816984 GACGAGCGGGAGGAGGGA 62.817 72.222 0.00 0.00 0.00 4.20
35 36 4.377760 ACGAGCGGGAGGAGGGAA 62.378 66.667 0.00 0.00 0.00 3.97
36 37 3.532155 CGAGCGGGAGGAGGGAAG 61.532 72.222 0.00 0.00 0.00 3.46
37 38 3.157949 GAGCGGGAGGAGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
38 39 3.986116 GAGCGGGAGGAGGGAAGGT 62.986 68.421 0.00 0.00 0.00 3.50
39 40 3.009714 GCGGGAGGAGGGAAGGTT 61.010 66.667 0.00 0.00 0.00 3.50
40 41 2.603652 GCGGGAGGAGGGAAGGTTT 61.604 63.158 0.00 0.00 0.00 3.27
41 42 1.299976 CGGGAGGAGGGAAGGTTTG 59.700 63.158 0.00 0.00 0.00 2.93
42 43 1.691823 GGGAGGAGGGAAGGTTTGG 59.308 63.158 0.00 0.00 0.00 3.28
43 44 1.691823 GGAGGAGGGAAGGTTTGGG 59.308 63.158 0.00 0.00 0.00 4.12
44 45 1.691823 GAGGAGGGAAGGTTTGGGG 59.308 63.158 0.00 0.00 0.00 4.96
45 46 0.845102 GAGGAGGGAAGGTTTGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
46 47 0.846870 AGGAGGGAAGGTTTGGGGAG 60.847 60.000 0.00 0.00 0.00 4.30
47 48 0.845102 GGAGGGAAGGTTTGGGGAGA 60.845 60.000 0.00 0.00 0.00 3.71
48 49 1.073098 GAGGGAAGGTTTGGGGAGAA 58.927 55.000 0.00 0.00 0.00 2.87
49 50 1.641192 GAGGGAAGGTTTGGGGAGAAT 59.359 52.381 0.00 0.00 0.00 2.40
50 51 1.359130 AGGGAAGGTTTGGGGAGAATG 59.641 52.381 0.00 0.00 0.00 2.67
51 52 1.619704 GGGAAGGTTTGGGGAGAATGG 60.620 57.143 0.00 0.00 0.00 3.16
52 53 1.186200 GAAGGTTTGGGGAGAATGGC 58.814 55.000 0.00 0.00 0.00 4.40
53 54 0.611896 AAGGTTTGGGGAGAATGGCG 60.612 55.000 0.00 0.00 0.00 5.69
54 55 2.710902 GGTTTGGGGAGAATGGCGC 61.711 63.158 0.00 0.00 0.00 6.53
55 56 2.362375 TTTGGGGAGAATGGCGCC 60.362 61.111 22.73 22.73 38.71 6.53
56 57 3.216985 TTTGGGGAGAATGGCGCCA 62.217 57.895 34.80 34.80 45.28 5.69
57 58 3.656280 TGGGGAGAATGGCGCCAA 61.656 61.111 36.33 17.74 44.19 4.52
58 59 2.362375 GGGGAGAATGGCGCCAAA 60.362 61.111 36.33 12.16 38.36 3.28
59 60 2.418083 GGGGAGAATGGCGCCAAAG 61.418 63.158 36.33 0.00 38.36 2.77
60 61 2.418083 GGGAGAATGGCGCCAAAGG 61.418 63.158 36.33 0.00 38.36 3.11
61 62 2.418083 GGAGAATGGCGCCAAAGGG 61.418 63.158 36.33 0.00 36.33 3.95
62 63 2.362889 AGAATGGCGCCAAAGGGG 60.363 61.111 36.33 0.00 38.76 4.79
89 90 2.356667 GGGGGAGGGTTGCTTCTG 59.643 66.667 0.00 0.00 0.00 3.02
90 91 2.539081 GGGGGAGGGTTGCTTCTGT 61.539 63.158 0.00 0.00 0.00 3.41
91 92 1.460699 GGGGAGGGTTGCTTCTGTT 59.539 57.895 0.00 0.00 0.00 3.16
92 93 0.178961 GGGGAGGGTTGCTTCTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
93 94 1.248486 GGGAGGGTTGCTTCTGTTTC 58.752 55.000 0.00 0.00 0.00 2.78
94 95 1.478654 GGGAGGGTTGCTTCTGTTTCA 60.479 52.381 0.00 0.00 0.00 2.69
95 96 1.609072 GGAGGGTTGCTTCTGTTTCAC 59.391 52.381 0.00 0.00 0.00 3.18
96 97 1.609072 GAGGGTTGCTTCTGTTTCACC 59.391 52.381 0.00 0.00 0.00 4.02
97 98 0.310854 GGGTTGCTTCTGTTTCACCG 59.689 55.000 0.00 0.00 0.00 4.94
98 99 1.305201 GGTTGCTTCTGTTTCACCGA 58.695 50.000 0.00 0.00 0.00 4.69
99 100 1.002792 GGTTGCTTCTGTTTCACCGAC 60.003 52.381 0.00 0.00 0.00 4.79
100 101 1.668751 GTTGCTTCTGTTTCACCGACA 59.331 47.619 0.00 0.00 0.00 4.35
101 102 2.254546 TGCTTCTGTTTCACCGACAT 57.745 45.000 0.00 0.00 0.00 3.06
102 103 1.872952 TGCTTCTGTTTCACCGACATG 59.127 47.619 0.00 0.00 0.00 3.21
103 104 1.400242 GCTTCTGTTTCACCGACATGC 60.400 52.381 0.00 0.00 0.00 4.06
104 105 0.865111 TTCTGTTTCACCGACATGCG 59.135 50.000 0.00 0.00 40.47 4.73
113 114 4.838152 CGACATGCGGGTCAGGGG 62.838 72.222 8.11 0.00 37.66 4.79
121 122 4.410400 GGGTCAGGGGCGGACAAG 62.410 72.222 5.22 0.00 37.00 3.16
156 157 4.961511 TCCGCGCGCTGTCTGTTT 62.962 61.111 30.48 0.00 0.00 2.83
157 158 4.430423 CCGCGCGCTGTCTGTTTC 62.430 66.667 30.48 0.00 0.00 2.78
158 159 4.759893 CGCGCGCTGTCTGTTTCG 62.760 66.667 30.48 5.07 0.00 3.46
160 161 4.430423 CGCGCTGTCTGTTTCGCC 62.430 66.667 5.56 0.00 44.12 5.54
161 162 4.090057 GCGCTGTCTGTTTCGCCC 62.090 66.667 0.00 0.00 41.53 6.13
162 163 3.423154 CGCTGTCTGTTTCGCCCC 61.423 66.667 0.00 0.00 0.00 5.80
163 164 2.281484 GCTGTCTGTTTCGCCCCA 60.281 61.111 0.00 0.00 0.00 4.96
164 165 1.896660 GCTGTCTGTTTCGCCCCAA 60.897 57.895 0.00 0.00 0.00 4.12
165 166 1.452145 GCTGTCTGTTTCGCCCCAAA 61.452 55.000 0.00 0.00 0.00 3.28
166 167 1.028905 CTGTCTGTTTCGCCCCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
167 168 1.001378 CTGTCTGTTTCGCCCCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
168 169 0.318699 GTCTGTTTCGCCCCAAAAGC 60.319 55.000 0.00 0.00 0.00 3.51
176 177 4.292178 CCCCAAAAGCGGCGCAAA 62.292 61.111 35.02 0.00 0.00 3.68
177 178 3.035503 CCCAAAAGCGGCGCAAAC 61.036 61.111 35.02 4.02 0.00 2.93
178 179 2.027460 CCAAAAGCGGCGCAAACT 59.973 55.556 35.02 10.65 0.00 2.66
179 180 1.591327 CCAAAAGCGGCGCAAACTT 60.591 52.632 35.02 16.88 0.00 2.66
180 181 1.559336 CAAAAGCGGCGCAAACTTG 59.441 52.632 35.02 24.17 0.00 3.16
181 182 1.591327 AAAAGCGGCGCAAACTTGG 60.591 52.632 35.02 0.00 0.00 3.61
182 183 2.010582 AAAAGCGGCGCAAACTTGGA 62.011 50.000 35.02 0.00 0.00 3.53
183 184 2.677573 AAAGCGGCGCAAACTTGGAC 62.678 55.000 35.02 0.00 0.00 4.02
184 185 4.700365 GCGGCGCAAACTTGGACC 62.700 66.667 29.21 0.00 0.00 4.46
185 186 4.383602 CGGCGCAAACTTGGACCG 62.384 66.667 10.83 0.00 0.00 4.79
186 187 4.700365 GGCGCAAACTTGGACCGC 62.700 66.667 10.83 4.88 43.51 5.68
188 189 4.383602 CGCAAACTTGGACCGCGG 62.384 66.667 26.86 26.86 42.13 6.46
189 190 2.975799 GCAAACTTGGACCGCGGA 60.976 61.111 35.90 6.51 0.00 5.54
190 191 2.332654 GCAAACTTGGACCGCGGAT 61.333 57.895 35.90 16.95 0.00 4.18
191 192 1.501741 CAAACTTGGACCGCGGATG 59.498 57.895 35.90 17.97 0.00 3.51
192 193 1.674322 AAACTTGGACCGCGGATGG 60.674 57.895 35.90 18.24 0.00 3.51
193 194 3.622060 AACTTGGACCGCGGATGGG 62.622 63.158 35.90 18.97 0.00 4.00
194 195 4.096003 CTTGGACCGCGGATGGGT 62.096 66.667 35.90 9.07 41.48 4.51
198 199 4.137872 GACCGCGGATGGGTCGAA 62.138 66.667 35.90 0.00 44.04 3.71
199 200 3.652539 GACCGCGGATGGGTCGAAA 62.653 63.158 35.90 0.00 44.04 3.46
200 201 2.435234 CCGCGGATGGGTCGAAAA 60.435 61.111 24.07 0.00 0.00 2.29
201 202 2.746803 CCGCGGATGGGTCGAAAAC 61.747 63.158 24.07 0.00 0.00 2.43
202 203 2.030401 CGCGGATGGGTCGAAAACA 61.030 57.895 0.00 0.00 0.00 2.83
203 204 1.794222 GCGGATGGGTCGAAAACAG 59.206 57.895 0.00 0.00 0.00 3.16
204 205 0.672401 GCGGATGGGTCGAAAACAGA 60.672 55.000 0.00 0.00 0.00 3.41
205 206 1.359848 CGGATGGGTCGAAAACAGAG 58.640 55.000 0.00 0.00 0.00 3.35
206 207 1.067142 CGGATGGGTCGAAAACAGAGA 60.067 52.381 0.00 0.00 0.00 3.10
207 208 2.347731 GGATGGGTCGAAAACAGAGAC 58.652 52.381 0.00 0.00 0.00 3.36
208 209 2.289444 GGATGGGTCGAAAACAGAGACA 60.289 50.000 0.00 0.00 36.68 3.41
209 210 2.992124 TGGGTCGAAAACAGAGACAA 57.008 45.000 0.00 0.00 36.68 3.18
210 211 3.269538 TGGGTCGAAAACAGAGACAAA 57.730 42.857 0.00 0.00 36.68 2.83
211 212 3.611970 TGGGTCGAAAACAGAGACAAAA 58.388 40.909 0.00 0.00 36.68 2.44
212 213 3.375922 TGGGTCGAAAACAGAGACAAAAC 59.624 43.478 0.00 0.00 36.68 2.43
213 214 3.545426 GGGTCGAAAACAGAGACAAAACG 60.545 47.826 0.00 0.00 36.68 3.60
214 215 3.545426 GGTCGAAAACAGAGACAAAACGG 60.545 47.826 0.00 0.00 36.68 4.44
215 216 3.307782 GTCGAAAACAGAGACAAAACGGA 59.692 43.478 0.00 0.00 35.19 4.69
216 217 3.307782 TCGAAAACAGAGACAAAACGGAC 59.692 43.478 0.00 0.00 0.00 4.79
217 218 3.062909 CGAAAACAGAGACAAAACGGACA 59.937 43.478 0.00 0.00 0.00 4.02
218 219 4.436317 CGAAAACAGAGACAAAACGGACAA 60.436 41.667 0.00 0.00 0.00 3.18
219 220 5.379732 AAAACAGAGACAAAACGGACAAA 57.620 34.783 0.00 0.00 0.00 2.83
220 221 5.576447 AAACAGAGACAAAACGGACAAAT 57.424 34.783 0.00 0.00 0.00 2.32
221 222 4.552166 ACAGAGACAAAACGGACAAATG 57.448 40.909 0.00 0.00 0.00 2.32
222 223 3.945285 ACAGAGACAAAACGGACAAATGT 59.055 39.130 0.00 0.00 0.00 2.71
223 224 4.398044 ACAGAGACAAAACGGACAAATGTT 59.602 37.500 0.00 0.00 0.00 2.71
224 225 4.970003 CAGAGACAAAACGGACAAATGTTC 59.030 41.667 0.00 0.00 0.00 3.18
231 232 2.399396 CGGACAAATGTTCGTTTGCT 57.601 45.000 14.82 5.32 41.88 3.91
232 233 2.307049 CGGACAAATGTTCGTTTGCTC 58.693 47.619 14.82 11.72 41.88 4.26
233 234 2.661594 GGACAAATGTTCGTTTGCTCC 58.338 47.619 14.82 15.33 41.61 4.70
234 235 2.607038 GGACAAATGTTCGTTTGCTCCC 60.607 50.000 14.82 10.87 41.61 4.30
235 236 1.001815 ACAAATGTTCGTTTGCTCCCG 60.002 47.619 14.82 0.00 41.61 5.14
236 237 0.039527 AAATGTTCGTTTGCTCCCGC 60.040 50.000 0.00 0.00 0.00 6.13
237 238 2.182614 AATGTTCGTTTGCTCCCGCG 62.183 55.000 0.00 0.00 39.65 6.46
238 239 4.736631 GTTCGTTTGCTCCCGCGC 62.737 66.667 0.00 0.00 39.65 6.86
279 280 2.404265 GTTTTACCCCAAACGAACGG 57.596 50.000 0.00 0.00 0.00 4.44
280 281 1.001487 GTTTTACCCCAAACGAACGGG 60.001 52.381 0.00 0.00 43.05 5.28
281 282 1.171549 TTTACCCCAAACGAACGGGC 61.172 55.000 0.00 0.00 41.57 6.13
282 283 3.549900 TACCCCAAACGAACGGGCC 62.550 63.158 0.00 0.00 41.57 5.80
286 287 4.992511 CAAACGAACGGGCCCGGA 62.993 66.667 44.99 0.00 44.69 5.14
287 288 4.692475 AAACGAACGGGCCCGGAG 62.692 66.667 44.99 35.00 44.69 4.63
292 293 4.798682 AACGGGCCCGGAGAGGAT 62.799 66.667 44.99 22.53 45.00 3.24
293 294 3.384555 AACGGGCCCGGAGAGGATA 62.385 63.158 44.99 0.00 45.00 2.59
294 295 2.283966 CGGGCCCGGAGAGGATAT 60.284 66.667 37.42 0.00 45.00 1.63
295 296 2.650116 CGGGCCCGGAGAGGATATG 61.650 68.421 37.42 2.88 45.00 1.78
296 297 2.294078 GGGCCCGGAGAGGATATGG 61.294 68.421 5.69 0.00 45.00 2.74
297 298 1.536662 GGCCCGGAGAGGATATGGT 60.537 63.158 0.73 0.00 45.00 3.55
298 299 1.545706 GGCCCGGAGAGGATATGGTC 61.546 65.000 0.73 0.00 45.00 4.02
299 300 0.832135 GCCCGGAGAGGATATGGTCA 60.832 60.000 0.73 0.00 45.00 4.02
300 301 0.969894 CCCGGAGAGGATATGGTCAC 59.030 60.000 0.73 0.00 45.00 3.67
304 305 0.039074 GAGAGGATATGGTCACGCGG 60.039 60.000 12.47 0.00 0.00 6.46
313 314 3.041940 GTCACGCGGTGGAGTTGG 61.042 66.667 12.47 0.00 33.87 3.77
314 315 4.980805 TCACGCGGTGGAGTTGGC 62.981 66.667 12.47 0.00 33.87 4.52
442 443 7.067372 ACGCATCTGGAATAGAAAATGAAATCA 59.933 33.333 0.00 0.00 39.30 2.57
754 779 2.268920 GCCCGCATGGAAGTGAGA 59.731 61.111 0.00 0.00 37.49 3.27
757 782 0.467384 CCCGCATGGAAGTGAGAGAT 59.533 55.000 0.00 0.00 37.49 2.75
759 784 0.935898 CGCATGGAAGTGAGAGATGC 59.064 55.000 0.00 0.00 36.81 3.91
762 787 1.489649 CATGGAAGTGAGAGATGCCCT 59.510 52.381 0.00 0.00 0.00 5.19
763 788 1.198713 TGGAAGTGAGAGATGCCCTC 58.801 55.000 0.00 0.00 42.28 4.30
768 793 2.040464 GAGAGATGCCCTCCCCCA 60.040 66.667 0.20 0.00 42.97 4.96
769 794 2.367512 AGAGATGCCCTCCCCCAC 60.368 66.667 0.20 0.00 42.97 4.61
770 795 2.367512 GAGATGCCCTCCCCCACT 60.368 66.667 0.00 0.00 35.87 4.00
772 797 1.988982 GAGATGCCCTCCCCCACTTC 61.989 65.000 0.00 0.00 35.87 3.01
851 877 2.029307 GCGAGGAAATAGGCGGAGGT 62.029 60.000 0.00 0.00 0.00 3.85
856 882 1.382146 AAATAGGCGGAGGTCGGGA 60.382 57.895 0.00 0.00 39.69 5.14
924 950 2.347114 CGCCATGAGACACCACCA 59.653 61.111 0.00 0.00 0.00 4.17
933 959 2.525877 ACACCACCACCCGTAGCT 60.526 61.111 0.00 0.00 0.00 3.32
935 961 1.255667 ACACCACCACCCGTAGCTAG 61.256 60.000 0.00 0.00 0.00 3.42
1548 1586 0.105246 AGGCTCTCCGGATCCTTGAT 60.105 55.000 3.57 0.00 34.77 2.57
1768 1806 0.471780 TGGCTCTGAGGGAACAGTCA 60.472 55.000 6.83 0.00 38.79 3.41
1869 1907 2.649129 GCCATTGCCTGAACCACCC 61.649 63.158 0.00 0.00 0.00 4.61
1897 1935 0.897863 CCCATCACCGGGCAAGAAAA 60.898 55.000 6.32 0.00 40.07 2.29
1903 1941 2.173382 CGGGCAAGAAAAGCGTCG 59.827 61.111 0.00 0.00 0.00 5.12
1971 2009 0.662619 TTGTCCTTTCACTTGCAGCG 59.337 50.000 0.00 0.00 0.00 5.18
1977 2015 1.785041 TTTCACTTGCAGCGCTGGTC 61.785 55.000 36.47 22.29 0.00 4.02
2102 2140 1.615124 TGATGTCACCATCCCGGGT 60.615 57.895 22.86 4.84 45.78 5.28
2156 2194 1.269988 CGTGGATGAGCTCACCTATGG 60.270 57.143 20.97 0.00 0.00 2.74
2172 2210 0.832983 ATGGGCAGTTGCACCATGTT 60.833 50.000 19.58 4.29 45.73 2.71
2213 2251 0.469705 AACCTTGTCAAGCATGGGCA 60.470 50.000 7.09 0.00 44.22 5.36
2220 2258 1.001764 CAAGCATGGGCACTCTGGA 60.002 57.895 0.00 0.00 44.61 3.86
2229 2267 1.410882 GGGCACTCTGGAGACATCTAC 59.589 57.143 4.49 0.00 41.51 2.59
2484 2522 7.308589 GGGTTATCTTCATTGGATTGGATAACG 60.309 40.741 13.67 0.00 42.58 3.18
2708 2755 6.709397 TGGAGATTCTATGCAGCTCAATAAAG 59.291 38.462 0.00 0.00 0.00 1.85
2732 2779 6.815142 AGCATGGCATTTTAATGAAGAAGTTC 59.185 34.615 0.00 0.00 38.70 3.01
2784 2832 8.860088 ACAGAAGGAAAATAATATTACCCATGC 58.140 33.333 0.00 0.00 0.00 4.06
2813 2887 2.524569 AAAATGGTTGCCCAAGAACG 57.475 45.000 0.00 0.00 46.04 3.95
2867 2941 4.742438 TTGTCGACCAACATTTAGAAGC 57.258 40.909 14.12 0.00 0.00 3.86
2875 2949 3.941483 CCAACATTTAGAAGCGAGGACAT 59.059 43.478 0.00 0.00 0.00 3.06
2900 2974 9.775854 ATCAGATGCCATGCTTAATATATAGTC 57.224 33.333 0.00 0.00 0.00 2.59
2979 3056 6.515272 ACATGCTTTGGAATTTTCGTAGAT 57.485 33.333 0.00 0.00 35.04 1.98
3066 3143 8.306313 AGAAGATGGGAAAACAAAAAGTTACT 57.694 30.769 0.00 0.00 40.26 2.24
3067 3144 8.414003 AGAAGATGGGAAAACAAAAAGTTACTC 58.586 33.333 0.00 0.00 40.26 2.59
3068 3145 7.050970 AGATGGGAAAACAAAAAGTTACTCC 57.949 36.000 0.00 0.00 40.26 3.85
3069 3146 6.609616 AGATGGGAAAACAAAAAGTTACTCCA 59.390 34.615 9.75 0.00 41.14 3.86
3070 3147 6.607004 TGGGAAAACAAAAAGTTACTCCAA 57.393 33.333 9.75 0.00 41.14 3.53
3071 3148 6.635755 TGGGAAAACAAAAAGTTACTCCAAG 58.364 36.000 9.75 0.00 41.14 3.61
3072 3149 5.522460 GGGAAAACAAAAAGTTACTCCAAGC 59.478 40.000 9.75 0.00 41.14 4.01
3073 3150 6.338146 GGAAAACAAAAAGTTACTCCAAGCT 58.662 36.000 0.00 0.00 40.26 3.74
3074 3151 6.255670 GGAAAACAAAAAGTTACTCCAAGCTG 59.744 38.462 0.00 0.00 40.26 4.24
3075 3152 4.307443 ACAAAAAGTTACTCCAAGCTGC 57.693 40.909 0.00 0.00 0.00 5.25
3076 3153 3.699038 ACAAAAAGTTACTCCAAGCTGCA 59.301 39.130 1.02 0.00 0.00 4.41
3077 3154 4.159506 ACAAAAAGTTACTCCAAGCTGCAA 59.840 37.500 1.02 0.00 0.00 4.08
3138 3217 1.142870 ACTGCAACACTAGCTTTGGGA 59.857 47.619 0.00 0.00 0.00 4.37
3149 3228 2.949447 AGCTTTGGGATGAACAACAGT 58.051 42.857 0.00 0.00 0.00 3.55
3162 3241 7.334421 GGATGAACAACAGTCTACACACATATT 59.666 37.037 0.00 0.00 0.00 1.28
3208 3288 9.213799 TGCATTGGAAAAACAAGGAATAATTAC 57.786 29.630 0.00 0.00 34.30 1.89
3708 3811 5.082251 ACCGAGAGTAAAAGTAATGACCC 57.918 43.478 0.00 0.00 0.00 4.46
3709 3812 4.081254 ACCGAGAGTAAAAGTAATGACCCC 60.081 45.833 0.00 0.00 0.00 4.95
3898 4001 2.039418 TCCTCATCCCTGTTACATCGG 58.961 52.381 0.00 0.00 0.00 4.18
3903 4006 3.517901 TCATCCCTGTTACATCGGAAACT 59.482 43.478 5.58 0.00 0.00 2.66
3964 4067 5.555017 ACAGTTTGCATCAAGATAGTGACT 58.445 37.500 0.00 0.00 0.00 3.41
4048 4152 8.770828 GTGTAACATGTCACTGTAATTTACACT 58.229 33.333 16.99 0.00 37.02 3.55
4057 4164 9.472361 GTCACTGTAATTTACACTTTGTCTCTA 57.528 33.333 5.14 0.00 34.46 2.43
4113 4220 1.133025 CCCAAACACAAGATGGATCGC 59.867 52.381 0.00 0.00 36.27 4.58
4183 4291 1.615384 GGGCTCTTTGGCTGACATCTT 60.615 52.381 0.00 0.00 41.48 2.40
4295 4403 3.634397 ACTGTACAGCCTGTGCATAAT 57.366 42.857 22.90 2.67 41.89 1.28
4296 4404 4.753516 ACTGTACAGCCTGTGCATAATA 57.246 40.909 22.90 0.00 41.89 0.98
4297 4405 4.442706 ACTGTACAGCCTGTGCATAATAC 58.557 43.478 22.90 0.35 41.89 1.89
4298 4406 4.162320 ACTGTACAGCCTGTGCATAATACT 59.838 41.667 22.90 0.00 41.89 2.12
4299 4407 4.693283 TGTACAGCCTGTGCATAATACTC 58.307 43.478 11.82 0.00 38.04 2.59
4300 4408 3.199880 ACAGCCTGTGCATAATACTCC 57.800 47.619 0.00 0.00 41.13 3.85
4301 4409 2.158755 ACAGCCTGTGCATAATACTCCC 60.159 50.000 0.00 0.00 41.13 4.30
4302 4410 2.126882 AGCCTGTGCATAATACTCCCA 58.873 47.619 0.00 0.00 41.13 4.37
4303 4411 2.509548 AGCCTGTGCATAATACTCCCAA 59.490 45.455 0.00 0.00 41.13 4.12
4304 4412 2.618709 GCCTGTGCATAATACTCCCAAC 59.381 50.000 0.00 0.00 37.47 3.77
4305 4413 2.872245 CCTGTGCATAATACTCCCAACG 59.128 50.000 0.00 0.00 0.00 4.10
4306 4414 3.531538 CTGTGCATAATACTCCCAACGT 58.468 45.455 0.00 0.00 0.00 3.99
4307 4415 3.938963 CTGTGCATAATACTCCCAACGTT 59.061 43.478 0.00 0.00 0.00 3.99
4308 4416 3.936453 TGTGCATAATACTCCCAACGTTC 59.064 43.478 0.00 0.00 0.00 3.95
4309 4417 3.311596 GTGCATAATACTCCCAACGTTCC 59.688 47.826 0.00 0.00 0.00 3.62
4310 4418 2.542595 GCATAATACTCCCAACGTTCCG 59.457 50.000 0.00 0.00 0.00 4.30
4311 4419 3.738899 GCATAATACTCCCAACGTTCCGA 60.739 47.826 0.00 0.00 0.00 4.55
4312 4420 4.628074 CATAATACTCCCAACGTTCCGAT 58.372 43.478 0.00 0.00 0.00 4.18
4313 4421 3.622166 AATACTCCCAACGTTCCGATT 57.378 42.857 0.00 0.00 0.00 3.34
4314 4422 3.622166 ATACTCCCAACGTTCCGATTT 57.378 42.857 0.00 0.00 0.00 2.17
4315 4423 4.741321 ATACTCCCAACGTTCCGATTTA 57.259 40.909 0.00 0.00 0.00 1.40
4316 4424 2.691927 ACTCCCAACGTTCCGATTTAC 58.308 47.619 0.00 0.00 0.00 2.01
4317 4425 2.301009 ACTCCCAACGTTCCGATTTACT 59.699 45.455 0.00 0.00 0.00 2.24
4318 4426 2.928116 CTCCCAACGTTCCGATTTACTC 59.072 50.000 0.00 0.00 0.00 2.59
4320 4428 2.331194 CCAACGTTCCGATTTACTCGT 58.669 47.619 0.00 0.00 46.18 4.18
4321 4429 2.343544 CCAACGTTCCGATTTACTCGTC 59.656 50.000 0.00 0.00 46.18 4.20
4322 4430 1.887320 ACGTTCCGATTTACTCGTCG 58.113 50.000 0.00 0.00 46.18 5.12
4323 4431 1.197721 ACGTTCCGATTTACTCGTCGT 59.802 47.619 0.00 0.00 46.18 4.34
4324 4432 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
4325 4433 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
4326 4434 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
4327 4435 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
4328 4436 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
4329 4437 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
4330 4438 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
4331 4439 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
4332 4440 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
4333 4441 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
4334 4442 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
4335 4443 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
4336 4444 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
4337 4445 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
4338 4446 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
4339 4447 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
4340 4448 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
4341 4449 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
4342 4450 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
4343 4451 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
4356 4464 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
4357 4465 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
4358 4466 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
4359 4467 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4360 4468 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4361 4469 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4362 4470 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4363 4471 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
4364 4472 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
4365 4473 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
4754 4862 2.656069 GGTGGTGCGGGAAGAGCTA 61.656 63.158 0.00 0.00 35.28 3.32
4772 4880 1.069358 CTATTCTCGAGCCCCAGTTCC 59.931 57.143 7.81 0.00 0.00 3.62
4837 4945 2.202878 CCATGGGCACTCGTACCG 60.203 66.667 2.85 0.00 0.00 4.02
5017 5125 7.575414 AGGATCACCATAGATTAGCTATACG 57.425 40.000 0.00 0.00 37.72 3.06
5035 5147 6.073167 GCTATACGTTACATGAGCTGAGACTA 60.073 42.308 0.00 0.00 0.00 2.59
5266 5379 3.203716 GGTAAGCATACCTACTTGCCAC 58.796 50.000 10.92 0.00 46.88 5.01
5269 5382 3.268023 AGCATACCTACTTGCCACTTC 57.732 47.619 0.00 0.00 39.72 3.01
5284 5397 3.552890 GCCACTTCTTTTTCCTTGCGATT 60.553 43.478 0.00 0.00 0.00 3.34
5285 5398 4.620982 CCACTTCTTTTTCCTTGCGATTT 58.379 39.130 0.00 0.00 0.00 2.17
5286 5399 5.768317 CCACTTCTTTTTCCTTGCGATTTA 58.232 37.500 0.00 0.00 0.00 1.40
5287 5400 5.629435 CCACTTCTTTTTCCTTGCGATTTAC 59.371 40.000 0.00 0.00 0.00 2.01
5288 5401 6.438763 CACTTCTTTTTCCTTGCGATTTACT 58.561 36.000 0.00 0.00 0.00 2.24
5289 5402 6.578919 CACTTCTTTTTCCTTGCGATTTACTC 59.421 38.462 0.00 0.00 0.00 2.59
5290 5403 5.622770 TCTTTTTCCTTGCGATTTACTCC 57.377 39.130 0.00 0.00 0.00 3.85
5291 5404 4.153475 TCTTTTTCCTTGCGATTTACTCCG 59.847 41.667 0.00 0.00 0.00 4.63
5292 5405 2.754946 TTCCTTGCGATTTACTCCGT 57.245 45.000 0.00 0.00 0.00 4.69
5293 5406 2.754946 TCCTTGCGATTTACTCCGTT 57.245 45.000 0.00 0.00 0.00 4.44
5294 5407 2.613691 TCCTTGCGATTTACTCCGTTC 58.386 47.619 0.00 0.00 0.00 3.95
5295 5408 1.323534 CCTTGCGATTTACTCCGTTCG 59.676 52.381 0.00 0.00 34.83 3.95
5296 5409 1.990563 CTTGCGATTTACTCCGTTCGT 59.009 47.619 0.00 0.00 34.24 3.85
5297 5410 1.621107 TGCGATTTACTCCGTTCGTC 58.379 50.000 0.00 0.00 34.24 4.20
5298 5411 0.919300 GCGATTTACTCCGTTCGTCC 59.081 55.000 0.00 0.00 34.24 4.79
5299 5412 1.553308 CGATTTACTCCGTTCGTCCC 58.447 55.000 0.00 0.00 0.00 4.46
5300 5413 1.135315 CGATTTACTCCGTTCGTCCCA 60.135 52.381 0.00 0.00 0.00 4.37
5301 5414 2.480759 CGATTTACTCCGTTCGTCCCAT 60.481 50.000 0.00 0.00 0.00 4.00
5302 5415 3.243168 CGATTTACTCCGTTCGTCCCATA 60.243 47.826 0.00 0.00 0.00 2.74
5303 5416 4.685924 GATTTACTCCGTTCGTCCCATAA 58.314 43.478 0.00 0.00 0.00 1.90
5304 5417 4.741321 TTTACTCCGTTCGTCCCATAAT 57.259 40.909 0.00 0.00 0.00 1.28
5305 5418 5.850557 TTTACTCCGTTCGTCCCATAATA 57.149 39.130 0.00 0.00 0.00 0.98
5306 5419 6.409524 TTTACTCCGTTCGTCCCATAATAT 57.590 37.500 0.00 0.00 0.00 1.28
5307 5420 7.523293 TTTACTCCGTTCGTCCCATAATATA 57.477 36.000 0.00 0.00 0.00 0.86
5308 5421 7.523293 TTACTCCGTTCGTCCCATAATATAA 57.477 36.000 0.00 0.00 0.00 0.98
5309 5422 6.022163 ACTCCGTTCGTCCCATAATATAAG 57.978 41.667 0.00 0.00 0.00 1.73
5310 5423 5.771666 ACTCCGTTCGTCCCATAATATAAGA 59.228 40.000 0.00 0.00 0.00 2.10
5311 5424 6.072064 ACTCCGTTCGTCCCATAATATAAGAG 60.072 42.308 0.00 0.00 0.00 2.85
5312 5425 4.863131 CCGTTCGTCCCATAATATAAGAGC 59.137 45.833 0.00 0.00 0.00 4.09
5313 5426 4.557690 CGTTCGTCCCATAATATAAGAGCG 59.442 45.833 0.00 0.00 0.00 5.03
5314 5427 5.467705 GTTCGTCCCATAATATAAGAGCGT 58.532 41.667 0.00 0.00 0.00 5.07
5315 5428 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
5316 5429 5.466819 TCGTCCCATAATATAAGAGCGTTG 58.533 41.667 0.00 0.00 0.00 4.10
5317 5430 5.010314 TCGTCCCATAATATAAGAGCGTTGT 59.990 40.000 0.00 0.00 0.00 3.32
5318 5431 6.207221 TCGTCCCATAATATAAGAGCGTTGTA 59.793 38.462 0.00 0.00 0.00 2.41
5319 5432 6.527023 CGTCCCATAATATAAGAGCGTTGTAG 59.473 42.308 0.00 0.00 0.00 2.74
5320 5433 7.376615 GTCCCATAATATAAGAGCGTTGTAGT 58.623 38.462 0.00 0.00 0.00 2.73
5321 5434 7.328737 GTCCCATAATATAAGAGCGTTGTAGTG 59.671 40.741 0.00 0.00 0.00 2.74
5322 5435 7.014905 TCCCATAATATAAGAGCGTTGTAGTGT 59.985 37.037 0.00 0.00 0.00 3.55
5323 5436 7.328737 CCCATAATATAAGAGCGTTGTAGTGTC 59.671 40.741 0.00 0.00 0.00 3.67
5324 5437 7.865889 CCATAATATAAGAGCGTTGTAGTGTCA 59.134 37.037 0.00 0.00 0.00 3.58
5325 5438 9.411801 CATAATATAAGAGCGTTGTAGTGTCAT 57.588 33.333 0.00 0.00 0.00 3.06
5328 5441 9.811995 AATATAAGAGCGTTGTAGTGTCATAAA 57.188 29.630 0.00 0.00 0.00 1.40
5329 5442 5.840940 AAGAGCGTTGTAGTGTCATAAAC 57.159 39.130 0.00 0.00 0.00 2.01
5330 5443 3.918591 AGAGCGTTGTAGTGTCATAAACG 59.081 43.478 2.13 2.13 44.72 3.60
5333 5446 4.227177 CGTTGTAGTGTCATAAACGCTC 57.773 45.455 0.00 0.00 45.69 5.03
5334 5447 3.918591 CGTTGTAGTGTCATAAACGCTCT 59.081 43.478 0.00 0.00 45.69 4.09
5335 5448 4.384846 CGTTGTAGTGTCATAAACGCTCTT 59.615 41.667 0.00 0.00 45.69 2.85
5336 5449 5.570206 CGTTGTAGTGTCATAAACGCTCTTA 59.430 40.000 0.00 0.00 45.69 2.10
5337 5450 6.252869 CGTTGTAGTGTCATAAACGCTCTTAT 59.747 38.462 0.00 0.00 45.69 1.73
5338 5451 7.430211 CGTTGTAGTGTCATAAACGCTCTTATA 59.570 37.037 0.00 0.00 45.69 0.98
5339 5452 9.245962 GTTGTAGTGTCATAAACGCTCTTATAT 57.754 33.333 0.00 0.00 45.69 0.86
5340 5453 9.811995 TTGTAGTGTCATAAACGCTCTTATATT 57.188 29.630 0.00 0.00 45.69 1.28
5344 5457 9.424319 AGTGTCATAAACGCTCTTATATTATGG 57.576 33.333 0.00 0.00 45.69 2.74
5345 5458 8.656849 GTGTCATAAACGCTCTTATATTATGGG 58.343 37.037 0.00 0.00 35.62 4.00
5346 5459 7.822334 TGTCATAAACGCTCTTATATTATGGGG 59.178 37.037 0.00 0.00 35.62 4.96
5347 5460 6.821665 TCATAAACGCTCTTATATTATGGGGC 59.178 38.462 0.00 0.00 35.62 5.80
5348 5461 3.247006 ACGCTCTTATATTATGGGGCG 57.753 47.619 17.85 17.85 45.49 6.13
5349 5462 2.093658 ACGCTCTTATATTATGGGGCGG 60.094 50.000 21.13 9.94 44.53 6.13
5350 5463 2.167693 CGCTCTTATATTATGGGGCGGA 59.832 50.000 14.03 0.00 38.12 5.54
5351 5464 3.738281 CGCTCTTATATTATGGGGCGGAG 60.738 52.174 14.03 0.00 38.12 4.63
5352 5465 3.432326 GCTCTTATATTATGGGGCGGAGG 60.432 52.174 0.00 0.00 0.00 4.30
5353 5466 3.112263 TCTTATATTATGGGGCGGAGGG 58.888 50.000 0.00 0.00 0.00 4.30
5354 5467 2.953093 TATATTATGGGGCGGAGGGA 57.047 50.000 0.00 0.00 0.00 4.20
5363 5476 2.359967 GGCGGAGGGAGTACTTGCT 61.360 63.158 0.00 0.00 0.00 3.91
5371 5484 3.707102 GAGGGAGTACTTGCTATTCTGGT 59.293 47.826 0.00 0.00 0.00 4.00
5479 5660 3.940657 GCATCTCTGACTGTATGCAAC 57.059 47.619 7.43 0.00 43.30 4.17
5527 5795 1.357420 AGGGTGGGTTCATTGTATGCA 59.643 47.619 0.00 0.00 0.00 3.96
5545 5813 9.868277 TTGTATGCAAAAGAAAGAAAGAAAAGA 57.132 25.926 0.00 0.00 0.00 2.52
5547 5815 8.972349 GTATGCAAAAGAAAGAAAGAAAAGAGG 58.028 33.333 0.00 0.00 0.00 3.69
5619 5887 2.496070 TCAGAGTCCAATGTCCTAACCG 59.504 50.000 0.00 0.00 0.00 4.44
5638 5906 0.464554 GCTAGACCATGGGACCAAGC 60.465 60.000 18.09 16.13 0.00 4.01
5642 5910 0.393537 GACCATGGGACCAAGCTGAG 60.394 60.000 18.09 0.00 0.00 3.35
5658 5926 2.086869 CTGAGGACATTTCCGCACAAT 58.913 47.619 0.00 0.00 45.97 2.71
5671 5939 3.199946 TCCGCACAATCCTTCTTATTCCT 59.800 43.478 0.00 0.00 0.00 3.36
5696 5964 0.036388 TCAGTGACCGATTTCCAGCC 60.036 55.000 0.00 0.00 0.00 4.85
5722 6001 0.516877 CGCGCTTCTGTTCCATTTCA 59.483 50.000 5.56 0.00 0.00 2.69
5729 6008 4.925646 GCTTCTGTTCCATTTCATTGAACC 59.074 41.667 0.00 0.00 38.04 3.62
5733 6012 6.882656 TCTGTTCCATTTCATTGAACCAAAA 58.117 32.000 0.00 0.00 38.04 2.44
5734 6013 6.760770 TCTGTTCCATTTCATTGAACCAAAAC 59.239 34.615 0.00 3.40 38.04 2.43
5735 6014 6.409704 TGTTCCATTTCATTGAACCAAAACA 58.590 32.000 0.00 5.73 38.04 2.83
5736 6015 7.052873 TGTTCCATTTCATTGAACCAAAACAT 58.947 30.769 0.00 0.00 38.04 2.71
5737 6016 7.226325 TGTTCCATTTCATTGAACCAAAACATC 59.774 33.333 0.00 0.00 38.04 3.06
5738 6017 6.824553 TCCATTTCATTGAACCAAAACATCA 58.175 32.000 0.00 0.00 0.00 3.07
5740 6019 6.707161 CCATTTCATTGAACCAAAACATCACT 59.293 34.615 0.00 0.00 0.00 3.41
5741 6020 7.307514 CCATTTCATTGAACCAAAACATCACTG 60.308 37.037 0.00 0.00 0.00 3.66
5742 6021 4.619973 TCATTGAACCAAAACATCACTGC 58.380 39.130 0.00 0.00 0.00 4.40
5819 6098 0.665369 AGCAAACGTAACTCGACCCG 60.665 55.000 0.00 0.00 42.86 5.28
5845 6124 1.947456 GGGGAACATCGGCAAGAATAC 59.053 52.381 0.00 0.00 0.00 1.89
5870 6152 8.757789 ACATAAATAAATCAAAATGCAGCATCG 58.242 29.630 8.77 0.51 0.00 3.84
5879 6161 1.162181 ATGCAGCATCGTCAATCCCG 61.162 55.000 0.52 0.00 0.00 5.14
5897 6179 0.877213 CGGACGACCACGAAAACCTT 60.877 55.000 4.48 0.00 42.66 3.50
5898 6180 0.863799 GGACGACCACGAAAACCTTC 59.136 55.000 0.00 0.00 42.66 3.46
5905 6187 4.261031 CGACCACGAAAACCTTCTTGAAAT 60.261 41.667 0.00 0.00 42.66 2.17
5918 6200 8.809468 ACCTTCTTGAAATATCTTAACCTTCC 57.191 34.615 0.00 0.00 0.00 3.46
5924 6206 6.817184 TGAAATATCTTAACCTTCCTCCTCG 58.183 40.000 0.00 0.00 0.00 4.63
5929 6211 1.664321 TAACCTTCCTCCTCGCGCTC 61.664 60.000 5.56 0.00 0.00 5.03
5932 6214 2.994995 TTCCTCCTCGCGCTCCAA 60.995 61.111 5.56 0.00 0.00 3.53
5935 6217 2.790791 CCTCCTCGCGCTCCAATCT 61.791 63.158 5.56 0.00 0.00 2.40
5938 6220 0.740868 TCCTCGCGCTCCAATCTTTG 60.741 55.000 5.56 0.00 0.00 2.77
5948 6230 0.659957 CCAATCTTTGGCTAGCTCGC 59.340 55.000 15.72 0.62 45.17 5.03
5949 6231 0.302890 CAATCTTTGGCTAGCTCGCG 59.697 55.000 15.72 0.00 0.00 5.87
5950 6232 0.811616 AATCTTTGGCTAGCTCGCGG 60.812 55.000 15.72 0.00 0.00 6.46
5951 6233 3.567797 CTTTGGCTAGCTCGCGGC 61.568 66.667 15.72 9.11 42.19 6.53
5960 6242 2.433318 GCTCGCGGCTCTTCTGTT 60.433 61.111 6.13 0.00 38.06 3.16
5961 6243 2.448705 GCTCGCGGCTCTTCTGTTC 61.449 63.158 6.13 0.00 38.06 3.18
5962 6244 1.807573 CTCGCGGCTCTTCTGTTCC 60.808 63.158 6.13 0.00 0.00 3.62
5963 6245 2.048222 CGCGGCTCTTCTGTTCCA 60.048 61.111 0.00 0.00 0.00 3.53
5964 6246 2.097038 CGCGGCTCTTCTGTTCCAG 61.097 63.158 0.00 0.00 0.00 3.86
5965 6247 2.394563 GCGGCTCTTCTGTTCCAGC 61.395 63.158 0.00 0.00 0.00 4.85
5966 6248 1.004560 CGGCTCTTCTGTTCCAGCA 60.005 57.895 0.00 0.00 33.22 4.41
5967 6249 1.018226 CGGCTCTTCTGTTCCAGCAG 61.018 60.000 0.00 0.00 37.81 4.24
5968 6250 1.304509 GGCTCTTCTGTTCCAGCAGC 61.305 60.000 0.00 0.00 36.49 5.25
5969 6251 0.604780 GCTCTTCTGTTCCAGCAGCA 60.605 55.000 0.00 0.00 36.49 4.41
5970 6252 1.440708 CTCTTCTGTTCCAGCAGCAG 58.559 55.000 0.00 0.00 36.49 4.24
5971 6253 0.604780 TCTTCTGTTCCAGCAGCAGC 60.605 55.000 0.00 0.00 42.56 5.25
5972 6254 0.887836 CTTCTGTTCCAGCAGCAGCA 60.888 55.000 3.17 0.00 45.49 4.41
5973 6255 0.251033 TTCTGTTCCAGCAGCAGCAT 60.251 50.000 3.17 0.00 45.49 3.79
5974 6256 0.675837 TCTGTTCCAGCAGCAGCATC 60.676 55.000 3.17 0.00 45.49 3.91
5975 6257 1.654954 CTGTTCCAGCAGCAGCATCC 61.655 60.000 3.17 0.00 45.49 3.51
5976 6258 1.676635 GTTCCAGCAGCAGCATCCA 60.677 57.895 3.17 0.00 45.49 3.41
5977 6259 1.676635 TTCCAGCAGCAGCATCCAC 60.677 57.895 3.17 0.00 45.49 4.02
5978 6260 2.360726 CCAGCAGCAGCATCCACA 60.361 61.111 3.17 0.00 45.49 4.17
5979 6261 2.407428 CCAGCAGCAGCATCCACAG 61.407 63.158 3.17 0.00 45.49 3.66
5980 6262 1.376812 CAGCAGCAGCATCCACAGA 60.377 57.895 3.17 0.00 45.49 3.41
5981 6263 1.376942 AGCAGCAGCATCCACAGAC 60.377 57.895 3.17 0.00 45.49 3.51
5982 6264 2.404995 GCAGCAGCATCCACAGACC 61.405 63.158 0.00 0.00 41.58 3.85
5983 6265 1.002990 CAGCAGCATCCACAGACCA 60.003 57.895 0.00 0.00 0.00 4.02
5984 6266 1.002868 AGCAGCATCCACAGACCAC 60.003 57.895 0.00 0.00 0.00 4.16
5985 6267 1.302752 GCAGCATCCACAGACCACA 60.303 57.895 0.00 0.00 0.00 4.17
5986 6268 1.303799 GCAGCATCCACAGACCACAG 61.304 60.000 0.00 0.00 0.00 3.66
5987 6269 0.675837 CAGCATCCACAGACCACAGG 60.676 60.000 0.00 0.00 0.00 4.00
5988 6270 0.837691 AGCATCCACAGACCACAGGA 60.838 55.000 0.00 0.00 34.12 3.86
5989 6271 0.392193 GCATCCACAGACCACAGGAG 60.392 60.000 0.00 0.00 32.91 3.69
5990 6272 0.392193 CATCCACAGACCACAGGAGC 60.392 60.000 0.00 0.00 32.91 4.70
5991 6273 1.892819 ATCCACAGACCACAGGAGCG 61.893 60.000 0.00 0.00 32.91 5.03
5992 6274 2.737180 CACAGACCACAGGAGCGT 59.263 61.111 0.00 0.00 0.00 5.07
5993 6275 1.373497 CACAGACCACAGGAGCGTC 60.373 63.158 0.00 0.00 0.00 5.19
5994 6276 1.531840 ACAGACCACAGGAGCGTCT 60.532 57.895 0.00 0.00 37.34 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.916777 TCCCACTCTTTCCCCCGTC 60.917 63.158 0.00 0.00 0.00 4.79
1 2 2.206036 TCCCACTCTTTCCCCCGT 59.794 61.111 0.00 0.00 0.00 5.28
2 3 2.669240 GTCCCACTCTTTCCCCCG 59.331 66.667 0.00 0.00 0.00 5.73
5 6 1.079057 GCTCGTCCCACTCTTTCCC 60.079 63.158 0.00 0.00 0.00 3.97
6 7 1.446272 CGCTCGTCCCACTCTTTCC 60.446 63.158 0.00 0.00 0.00 3.13
8 9 2.657237 CCGCTCGTCCCACTCTTT 59.343 61.111 0.00 0.00 0.00 2.52
9 10 3.382832 CCCGCTCGTCCCACTCTT 61.383 66.667 0.00 0.00 0.00 2.85
10 11 4.361971 TCCCGCTCGTCCCACTCT 62.362 66.667 0.00 0.00 0.00 3.24
11 12 3.827898 CTCCCGCTCGTCCCACTC 61.828 72.222 0.00 0.00 0.00 3.51
17 18 4.816984 TCCCTCCTCCCGCTCGTC 62.817 72.222 0.00 0.00 0.00 4.20
18 19 4.377760 TTCCCTCCTCCCGCTCGT 62.378 66.667 0.00 0.00 0.00 4.18
19 20 3.532155 CTTCCCTCCTCCCGCTCG 61.532 72.222 0.00 0.00 0.00 5.03
20 21 3.157949 CCTTCCCTCCTCCCGCTC 61.158 72.222 0.00 0.00 0.00 5.03
21 22 3.564347 AACCTTCCCTCCTCCCGCT 62.564 63.158 0.00 0.00 0.00 5.52
22 23 2.603652 AAACCTTCCCTCCTCCCGC 61.604 63.158 0.00 0.00 0.00 6.13
23 24 1.299976 CAAACCTTCCCTCCTCCCG 59.700 63.158 0.00 0.00 0.00 5.14
24 25 1.691823 CCAAACCTTCCCTCCTCCC 59.308 63.158 0.00 0.00 0.00 4.30
25 26 1.691823 CCCAAACCTTCCCTCCTCC 59.308 63.158 0.00 0.00 0.00 4.30
26 27 0.845102 TCCCCAAACCTTCCCTCCTC 60.845 60.000 0.00 0.00 0.00 3.71
27 28 0.846870 CTCCCCAAACCTTCCCTCCT 60.847 60.000 0.00 0.00 0.00 3.69
28 29 0.845102 TCTCCCCAAACCTTCCCTCC 60.845 60.000 0.00 0.00 0.00 4.30
29 30 1.073098 TTCTCCCCAAACCTTCCCTC 58.927 55.000 0.00 0.00 0.00 4.30
30 31 1.359130 CATTCTCCCCAAACCTTCCCT 59.641 52.381 0.00 0.00 0.00 4.20
31 32 1.619704 CCATTCTCCCCAAACCTTCCC 60.620 57.143 0.00 0.00 0.00 3.97
32 33 1.852633 CCATTCTCCCCAAACCTTCC 58.147 55.000 0.00 0.00 0.00 3.46
33 34 1.186200 GCCATTCTCCCCAAACCTTC 58.814 55.000 0.00 0.00 0.00 3.46
34 35 0.611896 CGCCATTCTCCCCAAACCTT 60.612 55.000 0.00 0.00 0.00 3.50
35 36 1.000896 CGCCATTCTCCCCAAACCT 60.001 57.895 0.00 0.00 0.00 3.50
36 37 2.710902 GCGCCATTCTCCCCAAACC 61.711 63.158 0.00 0.00 0.00 3.27
37 38 2.710902 GGCGCCATTCTCCCCAAAC 61.711 63.158 24.80 0.00 0.00 2.93
38 39 2.362375 GGCGCCATTCTCCCCAAA 60.362 61.111 24.80 0.00 0.00 3.28
39 40 2.721803 TTTGGCGCCATTCTCCCCAA 62.722 55.000 33.25 16.45 34.02 4.12
40 41 3.216985 TTTGGCGCCATTCTCCCCA 62.217 57.895 33.25 10.05 0.00 4.96
41 42 2.362375 TTTGGCGCCATTCTCCCC 60.362 61.111 33.25 0.00 0.00 4.81
42 43 2.418083 CCTTTGGCGCCATTCTCCC 61.418 63.158 33.25 0.00 0.00 4.30
43 44 2.418083 CCCTTTGGCGCCATTCTCC 61.418 63.158 33.25 0.00 0.00 3.71
44 45 2.418083 CCCCTTTGGCGCCATTCTC 61.418 63.158 33.25 0.00 0.00 2.87
45 46 2.362889 CCCCTTTGGCGCCATTCT 60.363 61.111 33.25 0.00 0.00 2.40
72 73 2.081585 AACAGAAGCAACCCTCCCCC 62.082 60.000 0.00 0.00 0.00 5.40
73 74 0.178961 AAACAGAAGCAACCCTCCCC 60.179 55.000 0.00 0.00 0.00 4.81
74 75 1.248486 GAAACAGAAGCAACCCTCCC 58.752 55.000 0.00 0.00 0.00 4.30
75 76 1.609072 GTGAAACAGAAGCAACCCTCC 59.391 52.381 0.00 0.00 36.32 4.30
76 77 1.609072 GGTGAAACAGAAGCAACCCTC 59.391 52.381 0.00 0.00 39.98 4.30
77 78 1.692411 GGTGAAACAGAAGCAACCCT 58.308 50.000 0.00 0.00 39.98 4.34
78 79 0.310854 CGGTGAAACAGAAGCAACCC 59.689 55.000 0.00 0.00 39.98 4.11
79 80 1.002792 GTCGGTGAAACAGAAGCAACC 60.003 52.381 0.00 0.00 44.15 3.77
80 81 1.668751 TGTCGGTGAAACAGAAGCAAC 59.331 47.619 0.00 0.00 44.15 4.17
81 82 2.031258 TGTCGGTGAAACAGAAGCAA 57.969 45.000 0.00 0.00 44.15 3.91
82 83 1.872952 CATGTCGGTGAAACAGAAGCA 59.127 47.619 0.00 0.00 44.15 3.91
83 84 1.400242 GCATGTCGGTGAAACAGAAGC 60.400 52.381 0.00 0.00 44.15 3.86
84 85 1.136252 CGCATGTCGGTGAAACAGAAG 60.136 52.381 0.00 0.00 44.15 2.85
85 86 0.865111 CGCATGTCGGTGAAACAGAA 59.135 50.000 0.00 0.00 44.15 3.02
86 87 2.527671 CGCATGTCGGTGAAACAGA 58.472 52.632 0.00 0.00 39.18 3.41
96 97 4.838152 CCCCTGACCCGCATGTCG 62.838 72.222 0.00 0.00 38.11 4.35
104 105 4.410400 CTTGTCCGCCCCTGACCC 62.410 72.222 0.00 0.00 31.60 4.46
139 140 4.961511 AAACAGACAGCGCGCGGA 62.962 61.111 36.82 0.00 0.00 5.54
140 141 4.430423 GAAACAGACAGCGCGCGG 62.430 66.667 33.06 29.37 0.00 6.46
141 142 4.759893 CGAAACAGACAGCGCGCG 62.760 66.667 28.44 28.44 0.00 6.86
145 146 3.423154 GGGGCGAAACAGACAGCG 61.423 66.667 0.00 0.00 0.00 5.18
146 147 1.452145 TTTGGGGCGAAACAGACAGC 61.452 55.000 0.00 0.00 0.00 4.40
147 148 1.001378 CTTTTGGGGCGAAACAGACAG 60.001 52.381 0.00 0.00 0.00 3.51
148 149 1.028905 CTTTTGGGGCGAAACAGACA 58.971 50.000 0.00 0.00 0.00 3.41
149 150 0.318699 GCTTTTGGGGCGAAACAGAC 60.319 55.000 0.00 0.00 0.00 3.51
150 151 2.037871 GCTTTTGGGGCGAAACAGA 58.962 52.632 0.00 0.00 0.00 3.41
151 152 4.653555 GCTTTTGGGGCGAAACAG 57.346 55.556 0.00 0.00 0.00 3.16
160 161 2.969677 AAGTTTGCGCCGCTTTTGGG 62.970 55.000 11.67 0.00 0.00 4.12
161 162 1.591327 AAGTTTGCGCCGCTTTTGG 60.591 52.632 11.67 0.00 0.00 3.28
162 163 1.559336 CAAGTTTGCGCCGCTTTTG 59.441 52.632 11.67 5.88 0.00 2.44
163 164 1.591327 CCAAGTTTGCGCCGCTTTT 60.591 52.632 11.67 0.00 0.00 2.27
164 165 2.027460 CCAAGTTTGCGCCGCTTT 59.973 55.556 11.67 0.00 0.00 3.51
165 166 2.904866 TCCAAGTTTGCGCCGCTT 60.905 55.556 11.67 3.41 0.00 4.68
166 167 3.660111 GTCCAAGTTTGCGCCGCT 61.660 61.111 11.67 0.00 0.00 5.52
167 168 4.700365 GGTCCAAGTTTGCGCCGC 62.700 66.667 4.18 0.00 0.00 6.53
168 169 4.383602 CGGTCCAAGTTTGCGCCG 62.384 66.667 4.18 9.63 37.50 6.46
169 170 4.700365 GCGGTCCAAGTTTGCGCC 62.700 66.667 4.18 0.00 33.23 6.53
172 173 2.332654 ATCCGCGGTCCAAGTTTGC 61.333 57.895 27.15 0.00 0.00 3.68
173 174 1.501741 CATCCGCGGTCCAAGTTTG 59.498 57.895 27.15 7.30 0.00 2.93
174 175 1.674322 CCATCCGCGGTCCAAGTTT 60.674 57.895 27.15 0.00 0.00 2.66
175 176 2.046314 CCATCCGCGGTCCAAGTT 60.046 61.111 27.15 0.00 0.00 2.66
176 177 4.096003 CCCATCCGCGGTCCAAGT 62.096 66.667 27.15 2.49 0.00 3.16
177 178 4.096003 ACCCATCCGCGGTCCAAG 62.096 66.667 27.15 13.81 0.00 3.61
178 179 4.090588 GACCCATCCGCGGTCCAA 62.091 66.667 27.15 5.72 43.48 3.53
181 182 3.652539 TTTCGACCCATCCGCGGTC 62.653 63.158 27.15 14.12 45.41 4.79
182 183 3.242897 TTTTCGACCCATCCGCGGT 62.243 57.895 27.15 10.00 35.88 5.68
183 184 2.435234 TTTTCGACCCATCCGCGG 60.435 61.111 22.12 22.12 0.00 6.46
184 185 1.966493 CTGTTTTCGACCCATCCGCG 61.966 60.000 0.00 0.00 0.00 6.46
185 186 0.672401 TCTGTTTTCGACCCATCCGC 60.672 55.000 0.00 0.00 0.00 5.54
186 187 1.067142 TCTCTGTTTTCGACCCATCCG 60.067 52.381 0.00 0.00 0.00 4.18
187 188 2.289444 TGTCTCTGTTTTCGACCCATCC 60.289 50.000 0.00 0.00 0.00 3.51
188 189 3.040147 TGTCTCTGTTTTCGACCCATC 57.960 47.619 0.00 0.00 0.00 3.51
189 190 3.485463 TTGTCTCTGTTTTCGACCCAT 57.515 42.857 0.00 0.00 0.00 4.00
190 191 2.992124 TTGTCTCTGTTTTCGACCCA 57.008 45.000 0.00 0.00 0.00 4.51
191 192 3.545426 CGTTTTGTCTCTGTTTTCGACCC 60.545 47.826 0.00 0.00 0.00 4.46
192 193 3.545426 CCGTTTTGTCTCTGTTTTCGACC 60.545 47.826 0.00 0.00 0.00 4.79
193 194 3.307782 TCCGTTTTGTCTCTGTTTTCGAC 59.692 43.478 0.00 0.00 0.00 4.20
194 195 3.307782 GTCCGTTTTGTCTCTGTTTTCGA 59.692 43.478 0.00 0.00 0.00 3.71
195 196 3.062909 TGTCCGTTTTGTCTCTGTTTTCG 59.937 43.478 0.00 0.00 0.00 3.46
196 197 4.609691 TGTCCGTTTTGTCTCTGTTTTC 57.390 40.909 0.00 0.00 0.00 2.29
197 198 5.379732 TTTGTCCGTTTTGTCTCTGTTTT 57.620 34.783 0.00 0.00 0.00 2.43
198 199 5.105917 ACATTTGTCCGTTTTGTCTCTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
199 200 4.398044 ACATTTGTCCGTTTTGTCTCTGTT 59.602 37.500 0.00 0.00 0.00 3.16
200 201 3.945285 ACATTTGTCCGTTTTGTCTCTGT 59.055 39.130 0.00 0.00 0.00 3.41
201 202 4.552166 ACATTTGTCCGTTTTGTCTCTG 57.448 40.909 0.00 0.00 0.00 3.35
202 203 4.260620 CGAACATTTGTCCGTTTTGTCTCT 60.261 41.667 0.00 0.00 0.00 3.10
203 204 3.966218 CGAACATTTGTCCGTTTTGTCTC 59.034 43.478 0.00 0.00 0.00 3.36
204 205 3.375922 ACGAACATTTGTCCGTTTTGTCT 59.624 39.130 0.00 0.00 30.41 3.41
205 206 3.687200 ACGAACATTTGTCCGTTTTGTC 58.313 40.909 0.00 0.00 30.41 3.18
206 207 3.768468 ACGAACATTTGTCCGTTTTGT 57.232 38.095 0.00 0.00 30.41 2.83
210 211 2.098443 AGCAAACGAACATTTGTCCGTT 59.902 40.909 1.69 1.69 45.56 4.44
211 212 1.673920 AGCAAACGAACATTTGTCCGT 59.326 42.857 0.00 0.00 40.92 4.69
212 213 2.307049 GAGCAAACGAACATTTGTCCG 58.693 47.619 0.00 0.00 40.92 4.79
213 214 2.607038 GGGAGCAAACGAACATTTGTCC 60.607 50.000 0.00 0.00 40.92 4.02
214 215 2.661594 GGGAGCAAACGAACATTTGTC 58.338 47.619 0.00 0.00 40.92 3.18
215 216 1.001815 CGGGAGCAAACGAACATTTGT 60.002 47.619 0.00 0.00 40.92 2.83
216 217 1.685302 CGGGAGCAAACGAACATTTG 58.315 50.000 0.00 0.00 41.62 2.32
260 261 1.001487 CCCGTTCGTTTGGGGTAAAAC 60.001 52.381 1.35 0.00 42.05 2.43
261 262 1.316651 CCCGTTCGTTTGGGGTAAAA 58.683 50.000 1.35 0.00 42.05 1.52
262 263 1.171549 GCCCGTTCGTTTGGGGTAAA 61.172 55.000 9.94 0.00 46.12 2.01
263 264 1.600356 GCCCGTTCGTTTGGGGTAA 60.600 57.895 9.94 0.00 46.12 2.85
264 265 2.032376 GCCCGTTCGTTTGGGGTA 59.968 61.111 9.94 0.00 46.12 3.69
265 266 4.960866 GGCCCGTTCGTTTGGGGT 62.961 66.667 9.94 0.00 46.12 4.95
269 270 4.992511 TCCGGGCCCGTTCGTTTG 62.993 66.667 40.52 24.36 37.81 2.93
270 271 4.692475 CTCCGGGCCCGTTCGTTT 62.692 66.667 40.52 0.00 37.81 3.60
275 276 2.674672 ATATCCTCTCCGGGCCCGTT 62.675 60.000 40.52 18.68 37.81 4.44
276 277 3.161853 ATATCCTCTCCGGGCCCGT 62.162 63.158 40.52 23.95 37.81 5.28
277 278 2.283966 ATATCCTCTCCGGGCCCG 60.284 66.667 37.99 37.99 39.44 6.13
278 279 2.294078 CCATATCCTCTCCGGGCCC 61.294 68.421 13.57 13.57 0.00 5.80
279 280 1.536662 ACCATATCCTCTCCGGGCC 60.537 63.158 0.00 0.00 0.00 5.80
280 281 0.832135 TGACCATATCCTCTCCGGGC 60.832 60.000 0.00 0.00 0.00 6.13
281 282 0.969894 GTGACCATATCCTCTCCGGG 59.030 60.000 0.00 0.00 0.00 5.73
282 283 0.598562 CGTGACCATATCCTCTCCGG 59.401 60.000 0.00 0.00 0.00 5.14
283 284 0.039074 GCGTGACCATATCCTCTCCG 60.039 60.000 0.00 0.00 0.00 4.63
284 285 0.039074 CGCGTGACCATATCCTCTCC 60.039 60.000 0.00 0.00 0.00 3.71
285 286 0.039074 CCGCGTGACCATATCCTCTC 60.039 60.000 4.92 0.00 0.00 3.20
286 287 0.755698 ACCGCGTGACCATATCCTCT 60.756 55.000 4.92 0.00 0.00 3.69
287 288 0.597637 CACCGCGTGACCATATCCTC 60.598 60.000 4.92 0.00 35.23 3.71
288 289 1.441729 CACCGCGTGACCATATCCT 59.558 57.895 4.92 0.00 35.23 3.24
289 290 1.594293 CCACCGCGTGACCATATCC 60.594 63.158 4.92 0.00 35.23 2.59
290 291 0.597637 CTCCACCGCGTGACCATATC 60.598 60.000 4.92 0.00 35.23 1.63
291 292 1.327690 ACTCCACCGCGTGACCATAT 61.328 55.000 4.92 0.00 35.23 1.78
292 293 1.537814 AACTCCACCGCGTGACCATA 61.538 55.000 4.92 0.00 35.23 2.74
293 294 2.879233 AACTCCACCGCGTGACCAT 61.879 57.895 4.92 0.00 35.23 3.55
294 295 3.542676 AACTCCACCGCGTGACCA 61.543 61.111 4.92 0.00 35.23 4.02
295 296 3.041940 CAACTCCACCGCGTGACC 61.042 66.667 4.92 0.00 35.23 4.02
296 297 3.041940 CCAACTCCACCGCGTGAC 61.042 66.667 4.92 0.00 35.23 3.67
297 298 4.980805 GCCAACTCCACCGCGTGA 62.981 66.667 4.92 0.00 35.23 4.35
300 301 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
304 305 2.038557 TCAAGTCTTAGGCCAACTCCAC 59.961 50.000 5.01 0.00 0.00 4.02
313 314 2.770164 TGCTCCTTCAAGTCTTAGGC 57.230 50.000 0.00 0.00 0.00 3.93
314 315 4.543590 TCTTGCTCCTTCAAGTCTTAGG 57.456 45.455 3.80 0.00 42.90 2.69
707 732 4.680237 TCCTTCCGCCAGCGTGTG 62.680 66.667 11.55 0.23 37.81 3.82
708 733 3.936203 TTCCTTCCGCCAGCGTGT 61.936 61.111 11.55 0.00 37.81 4.49
709 734 3.423154 GTTCCTTCCGCCAGCGTG 61.423 66.667 11.55 2.83 37.81 5.34
710 735 4.699522 GGTTCCTTCCGCCAGCGT 62.700 66.667 11.55 0.00 37.81 5.07
728 753 3.451894 CATGCGGGCCCCAGAAAC 61.452 66.667 18.66 0.00 0.00 2.78
729 754 4.757355 CCATGCGGGCCCCAGAAA 62.757 66.667 18.66 0.00 0.00 2.52
754 779 2.003548 GAAGTGGGGGAGGGCATCT 61.004 63.158 0.00 0.00 0.00 2.90
762 787 3.646715 CCAAGGCGAAGTGGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
811 837 3.706373 TCAGCGTCTGGGGAAGCC 61.706 66.667 6.95 0.00 45.60 4.35
856 882 3.284449 GTTCGGCGCTTTGGGTGT 61.284 61.111 7.64 0.00 0.00 4.16
933 959 4.524318 GCGGTAAGGGCTGCGCTA 62.524 66.667 19.99 5.79 0.00 4.26
935 961 4.524318 TAGCGGTAAGGGCTGCGC 62.524 66.667 8.86 8.86 44.91 6.09
988 1026 3.424105 AAGCATGGGGGAGGAGGC 61.424 66.667 0.00 0.00 0.00 4.70
1307 1345 2.291043 TTGAACTCCTCGAGGGCCC 61.291 63.158 30.80 16.46 33.35 5.80
1437 1475 2.512515 GACATGCCGAGGTGGAGC 60.513 66.667 0.00 0.00 42.00 4.70
1548 1586 3.020984 GGTGAGGTTGTTGTTGGAAAGA 58.979 45.455 0.00 0.00 0.00 2.52
1735 1773 2.652590 AGAGCCATTCTGAAATCCAGC 58.347 47.619 0.00 0.00 42.62 4.85
1768 1806 4.020928 TGGCAAGCAATTCATCTTGATGTT 60.021 37.500 13.03 0.00 41.50 2.71
1818 1856 5.277058 CCTCTTAAAGAAATCCTCGCAATCG 60.277 44.000 0.00 0.00 0.00 3.34
1860 1898 1.076549 GGATGCTTGGGGTGGTTCA 59.923 57.895 0.00 0.00 0.00 3.18
1869 1907 1.825191 CGGTGATGGGGATGCTTGG 60.825 63.158 0.00 0.00 0.00 3.61
1897 1935 1.671054 CATGTTTCCACCCGACGCT 60.671 57.895 0.00 0.00 0.00 5.07
1903 1941 3.270877 CAGCTAGTACATGTTTCCACCC 58.729 50.000 2.30 0.00 0.00 4.61
1971 2009 1.000938 CTCACCAAGCAAAAGACCAGC 60.001 52.381 0.00 0.00 0.00 4.85
1977 2015 1.251251 CCCTCCTCACCAAGCAAAAG 58.749 55.000 0.00 0.00 0.00 2.27
2102 2140 1.906574 CCTTGGGTGGACTGTTAGCTA 59.093 52.381 0.00 0.00 0.00 3.32
2156 2194 1.068333 CAGTAACATGGTGCAACTGCC 60.068 52.381 2.04 0.00 41.18 4.85
2172 2210 2.832838 TCATCTCCAAAGCCTCCAGTA 58.167 47.619 0.00 0.00 0.00 2.74
2213 2251 2.370349 CACGGTAGATGTCTCCAGAGT 58.630 52.381 0.00 0.00 0.00 3.24
2220 2258 2.217510 AGACACCACGGTAGATGTCT 57.782 50.000 12.71 12.71 45.39 3.41
2229 2267 1.202582 CCACTCTCTAAGACACCACGG 59.797 57.143 0.00 0.00 0.00 4.94
2484 2522 4.217118 ACACCAATTGCAATCTTCAGTCTC 59.783 41.667 13.38 0.00 0.00 3.36
2584 2622 6.759497 AACTGCCATACTCCAAAAGAATAC 57.241 37.500 0.00 0.00 0.00 1.89
2589 2627 5.245531 TCTGTAACTGCCATACTCCAAAAG 58.754 41.667 0.00 0.00 0.00 2.27
2642 2681 8.122330 TGTTAATGCTGAAAATAGCTTATCACG 58.878 33.333 0.00 0.00 44.01 4.35
2708 2755 6.815142 AGAACTTCTTCATTAAAATGCCATGC 59.185 34.615 0.00 0.00 36.36 4.06
2732 2779 5.650266 ACTGTCTCACTTGTGATCCTAGTAG 59.350 44.000 3.79 0.00 0.00 2.57
2840 2914 2.723124 ATGTTGGTCGACAAAATGCC 57.277 45.000 18.91 0.71 41.58 4.40
2867 2941 1.509703 CATGGCATCTGATGTCCTCG 58.490 55.000 18.75 11.14 32.84 4.63
2875 2949 8.761689 TGACTATATATTAAGCATGGCATCTGA 58.238 33.333 0.00 0.00 0.00 3.27
3037 3114 9.952030 AACTTTTTGTTTTCCCATCTTCTTAAA 57.048 25.926 0.00 0.00 34.84 1.52
3138 3217 7.661437 ACAATATGTGTGTAGACTGTTGTTCAT 59.339 33.333 0.00 0.00 39.72 2.57
3162 3241 5.903764 GCATTTGCACATGTAAAGAAACA 57.096 34.783 14.07 0.00 41.59 2.83
3208 3288 1.201647 AGCTTTACTGCATGCTGCTTG 59.798 47.619 22.92 10.85 45.31 4.01
3234 3314 8.767085 AGTCAAGCACAAAACAAATAAATGATG 58.233 29.630 0.00 0.00 0.00 3.07
3392 3487 7.172361 TGACGTGATCACAAATGAATAAGAACA 59.828 33.333 24.93 8.11 38.69 3.18
3666 3769 5.347635 TCGGTTGAAAGTGATATTCGTGAAG 59.652 40.000 0.00 0.00 0.00 3.02
3708 3811 9.886132 ATAAACTGTAGTGACCAACTAAATAGG 57.114 33.333 0.00 0.00 43.08 2.57
3747 3850 7.093771 CCCCAGTTCATAAGCTTTATTTTGAGT 60.094 37.037 3.20 0.00 0.00 3.41
3873 3976 2.983192 TGTAACAGGGATGAGGAACCAA 59.017 45.455 0.00 0.00 0.00 3.67
3898 4001 8.590719 ACAGCTCTTAACAAGTAACTAGTTTC 57.409 34.615 14.49 8.92 0.00 2.78
3903 4006 7.277396 ACCAAACAGCTCTTAACAAGTAACTA 58.723 34.615 0.00 0.00 0.00 2.24
3964 4067 3.206964 TCAATTGCGTTGACTTGTACCA 58.793 40.909 0.00 0.00 41.79 3.25
4031 4135 8.366671 AGAGACAAAGTGTAAATTACAGTGAC 57.633 34.615 13.58 9.16 41.27 3.67
4048 4152 3.202906 GGCATTACCGCATAGAGACAAA 58.797 45.455 0.00 0.00 0.00 2.83
4074 4181 2.939103 GGGAGATGATGTGGAAGTTTCG 59.061 50.000 0.00 0.00 0.00 3.46
4285 4393 3.531538 ACGTTGGGAGTATTATGCACAG 58.468 45.455 0.00 0.00 0.00 3.66
4310 4418 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
4311 4419 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
4312 4420 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
4313 4421 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4314 4422 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4315 4423 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4316 4424 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4317 4425 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
4318 4426 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
4319 4427 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
4332 4440 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
4333 4441 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
4334 4442 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
4335 4443 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
4336 4444 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
4337 4445 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
4338 4446 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
4339 4447 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
4340 4448 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
4341 4449 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
4342 4450 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
4343 4451 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
4344 4452 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
4345 4453 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
4346 4454 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
4347 4455 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
4348 4456 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
4349 4457 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
4350 4458 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
4351 4459 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
4352 4460 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
4353 4461 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
4354 4462 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
4355 4463 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
4357 4465 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
4358 4466 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
4359 4467 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
4360 4468 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
4361 4469 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
4362 4470 1.856629 TTACTCCCTCCGTTCCGATT 58.143 50.000 0.00 0.00 0.00 3.34
4363 4471 2.083628 ATTACTCCCTCCGTTCCGAT 57.916 50.000 0.00 0.00 0.00 4.18
4364 4472 1.753073 GAATTACTCCCTCCGTTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
4365 4473 1.755380 AGAATTACTCCCTCCGTTCCG 59.245 52.381 0.00 0.00 0.00 4.30
4366 4474 2.764572 TCAGAATTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
4367 4475 4.099573 TCATCAGAATTACTCCCTCCGTTC 59.900 45.833 0.00 0.00 0.00 3.95
4368 4476 4.030913 TCATCAGAATTACTCCCTCCGTT 58.969 43.478 0.00 0.00 0.00 4.44
4369 4477 3.639094 CTCATCAGAATTACTCCCTCCGT 59.361 47.826 0.00 0.00 0.00 4.69
4370 4478 3.553922 GCTCATCAGAATTACTCCCTCCG 60.554 52.174 0.00 0.00 0.00 4.63
4371 4479 3.389329 TGCTCATCAGAATTACTCCCTCC 59.611 47.826 0.00 0.00 0.00 4.30
4372 4480 4.679373 TGCTCATCAGAATTACTCCCTC 57.321 45.455 0.00 0.00 0.00 4.30
4373 4481 5.441718 TTTGCTCATCAGAATTACTCCCT 57.558 39.130 0.00 0.00 0.00 4.20
4374 4482 6.705863 ATTTTGCTCATCAGAATTACTCCC 57.294 37.500 0.00 0.00 0.00 4.30
4375 4483 8.992835 AAAATTTTGCTCATCAGAATTACTCC 57.007 30.769 1.75 0.00 38.19 3.85
4539 4647 8.296713 GGTTTCAATGTAATCTAAAGTGCTTGA 58.703 33.333 0.00 0.00 0.00 3.02
4629 4737 2.237143 TGGAGACTGCCCATACTTCTTG 59.763 50.000 0.00 0.00 0.00 3.02
4754 4862 1.908483 GGAACTGGGGCTCGAGAAT 59.092 57.895 18.75 0.00 0.00 2.40
4772 4880 1.805945 GGTACTTGTGAGCCGAGCG 60.806 63.158 0.00 0.00 0.00 5.03
4837 4945 0.034337 TGTTTGCACCTCGGAGTACC 59.966 55.000 4.02 0.00 0.00 3.34
5017 5125 6.314896 AGCAAAATAGTCTCAGCTCATGTAAC 59.685 38.462 0.00 0.00 0.00 2.50
5035 5147 6.810182 GCATCTGAGATTAACAACAGCAAAAT 59.190 34.615 0.00 0.00 0.00 1.82
5195 5307 7.262772 CGTTTATTCCCAGTACAGATTACAGA 58.737 38.462 0.00 0.00 0.00 3.41
5266 5379 6.086871 GGAGTAAATCGCAAGGAAAAAGAAG 58.913 40.000 0.00 0.00 38.47 2.85
5269 5382 4.083484 ACGGAGTAAATCGCAAGGAAAAAG 60.083 41.667 0.00 0.00 41.94 2.27
5284 5397 7.448161 TCTTATATTATGGGACGAACGGAGTAA 59.552 37.037 0.00 0.00 45.00 2.24
5285 5398 6.942005 TCTTATATTATGGGACGAACGGAGTA 59.058 38.462 0.00 0.00 45.00 2.59
5287 5400 6.263516 TCTTATATTATGGGACGAACGGAG 57.736 41.667 0.00 0.00 0.00 4.63
5288 5401 5.336213 GCTCTTATATTATGGGACGAACGGA 60.336 44.000 0.00 0.00 0.00 4.69
5289 5402 4.863131 GCTCTTATATTATGGGACGAACGG 59.137 45.833 0.00 0.00 0.00 4.44
5290 5403 4.557690 CGCTCTTATATTATGGGACGAACG 59.442 45.833 0.00 0.00 0.00 3.95
5291 5404 5.467705 ACGCTCTTATATTATGGGACGAAC 58.532 41.667 0.00 0.00 0.00 3.95
5292 5405 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
5293 5406 5.010314 ACAACGCTCTTATATTATGGGACGA 59.990 40.000 0.00 0.00 0.00 4.20
5294 5407 5.227908 ACAACGCTCTTATATTATGGGACG 58.772 41.667 0.00 0.00 0.00 4.79
5295 5408 7.328737 CACTACAACGCTCTTATATTATGGGAC 59.671 40.741 0.00 0.00 0.00 4.46
5296 5409 7.014905 ACACTACAACGCTCTTATATTATGGGA 59.985 37.037 0.00 0.00 0.00 4.37
5297 5410 7.152645 ACACTACAACGCTCTTATATTATGGG 58.847 38.462 0.00 0.00 0.00 4.00
5298 5411 7.865889 TGACACTACAACGCTCTTATATTATGG 59.134 37.037 0.00 0.00 0.00 2.74
5299 5412 8.797266 TGACACTACAACGCTCTTATATTATG 57.203 34.615 0.00 0.00 0.00 1.90
5302 5415 9.811995 TTTATGACACTACAACGCTCTTATATT 57.188 29.630 0.00 0.00 0.00 1.28
5303 5416 9.245962 GTTTATGACACTACAACGCTCTTATAT 57.754 33.333 0.00 0.00 0.00 0.86
5304 5417 7.430211 CGTTTATGACACTACAACGCTCTTATA 59.570 37.037 0.00 0.00 0.00 0.98
5305 5418 6.252869 CGTTTATGACACTACAACGCTCTTAT 59.747 38.462 0.00 0.00 0.00 1.73
5306 5419 5.570206 CGTTTATGACACTACAACGCTCTTA 59.430 40.000 0.00 0.00 0.00 2.10
5307 5420 4.384846 CGTTTATGACACTACAACGCTCTT 59.615 41.667 0.00 0.00 0.00 2.85
5308 5421 3.918591 CGTTTATGACACTACAACGCTCT 59.081 43.478 0.00 0.00 0.00 4.09
5309 5422 4.227177 CGTTTATGACACTACAACGCTC 57.773 45.455 0.00 0.00 0.00 5.03
5312 5425 3.918591 AGAGCGTTTATGACACTACAACG 59.081 43.478 0.00 0.00 35.55 4.10
5313 5426 5.840940 AAGAGCGTTTATGACACTACAAC 57.159 39.130 0.00 0.00 0.00 3.32
5314 5427 9.811995 AATATAAGAGCGTTTATGACACTACAA 57.188 29.630 6.15 0.00 0.00 2.41
5318 5431 9.424319 CCATAATATAAGAGCGTTTATGACACT 57.576 33.333 0.00 0.00 33.93 3.55
5319 5432 8.656849 CCCATAATATAAGAGCGTTTATGACAC 58.343 37.037 0.00 0.00 33.93 3.67
5320 5433 7.822334 CCCCATAATATAAGAGCGTTTATGACA 59.178 37.037 0.00 0.00 33.93 3.58
5321 5434 7.201617 GCCCCATAATATAAGAGCGTTTATGAC 60.202 40.741 0.00 0.00 33.93 3.06
5322 5435 6.821665 GCCCCATAATATAAGAGCGTTTATGA 59.178 38.462 0.00 0.00 33.93 2.15
5323 5436 6.238103 CGCCCCATAATATAAGAGCGTTTATG 60.238 42.308 0.00 0.00 37.69 1.90
5324 5437 5.815740 CGCCCCATAATATAAGAGCGTTTAT 59.184 40.000 0.00 2.15 37.69 1.40
5325 5438 5.172934 CGCCCCATAATATAAGAGCGTTTA 58.827 41.667 0.00 0.00 37.69 2.01
5326 5439 4.000988 CGCCCCATAATATAAGAGCGTTT 58.999 43.478 0.00 0.00 37.69 3.60
5327 5440 3.596214 CGCCCCATAATATAAGAGCGTT 58.404 45.455 0.00 0.00 37.69 4.84
5328 5441 2.093658 CCGCCCCATAATATAAGAGCGT 60.094 50.000 0.00 0.00 40.66 5.07
5329 5442 2.167693 TCCGCCCCATAATATAAGAGCG 59.832 50.000 0.00 0.00 41.84 5.03
5330 5443 3.432326 CCTCCGCCCCATAATATAAGAGC 60.432 52.174 0.00 0.00 0.00 4.09
5331 5444 3.134804 CCCTCCGCCCCATAATATAAGAG 59.865 52.174 0.00 0.00 0.00 2.85
5332 5445 3.112263 CCCTCCGCCCCATAATATAAGA 58.888 50.000 0.00 0.00 0.00 2.10
5333 5446 3.112263 TCCCTCCGCCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
5334 5447 3.112263 CTCCCTCCGCCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
5335 5448 2.045326 ACTCCCTCCGCCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
5336 5449 1.203440 ACTCCCTCCGCCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
5337 5450 0.192566 ACTCCCTCCGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
5338 5451 0.192566 TACTCCCTCCGCCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
5339 5452 0.761702 GTACTCCCTCCGCCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
5340 5453 1.152398 GTACTCCCTCCGCCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
5341 5454 2.446036 GTACTCCCTCCGCCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
5342 5455 3.248248 AAGTACTCCCTCCGCCCCA 62.248 63.158 0.00 0.00 0.00 4.96
5343 5456 2.365237 AAGTACTCCCTCCGCCCC 60.365 66.667 0.00 0.00 0.00 5.80
5344 5457 2.901042 CAAGTACTCCCTCCGCCC 59.099 66.667 0.00 0.00 0.00 6.13
5345 5458 1.041447 TAGCAAGTACTCCCTCCGCC 61.041 60.000 0.00 0.00 0.00 6.13
5346 5459 1.041437 ATAGCAAGTACTCCCTCCGC 58.959 55.000 0.00 0.00 0.00 5.54
5347 5460 2.959707 AGAATAGCAAGTACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
5348 5461 3.070302 CCAGAATAGCAAGTACTCCCTCC 59.930 52.174 0.00 0.00 0.00 4.30
5349 5462 3.707102 ACCAGAATAGCAAGTACTCCCTC 59.293 47.826 0.00 0.00 0.00 4.30
5350 5463 3.725634 ACCAGAATAGCAAGTACTCCCT 58.274 45.455 0.00 0.00 0.00 4.20
5351 5464 4.489306 AACCAGAATAGCAAGTACTCCC 57.511 45.455 0.00 0.00 0.00 4.30
5352 5465 6.092807 CAGAAAACCAGAATAGCAAGTACTCC 59.907 42.308 0.00 0.00 0.00 3.85
5353 5466 6.651225 ACAGAAAACCAGAATAGCAAGTACTC 59.349 38.462 0.00 0.00 0.00 2.59
5354 5467 6.428159 CACAGAAAACCAGAATAGCAAGTACT 59.572 38.462 0.00 0.00 0.00 2.73
5508 5776 1.846007 TGCATACAATGAACCCACCC 58.154 50.000 0.00 0.00 0.00 4.61
5527 5795 9.102757 GCATTTCCTCTTTTCTTTCTTTCTTTT 57.897 29.630 0.00 0.00 0.00 2.27
5619 5887 0.464554 GCTTGGTCCCATGGTCTAGC 60.465 60.000 11.73 13.14 0.00 3.42
5638 5906 1.522668 TTGTGCGGAAATGTCCTCAG 58.477 50.000 0.00 0.00 39.34 3.35
5642 5910 1.463674 AGGATTGTGCGGAAATGTCC 58.536 50.000 0.00 0.00 41.01 4.02
5658 5926 4.774124 CTGATGCACAGGAATAAGAAGGA 58.226 43.478 8.03 0.00 42.39 3.36
5671 5939 2.076100 GAAATCGGTCACTGATGCACA 58.924 47.619 0.00 0.00 0.00 4.57
5722 6001 4.942761 AGCAGTGATGTTTTGGTTCAAT 57.057 36.364 0.00 0.00 0.00 2.57
5729 6008 3.421888 GCACGTAAAGCAGTGATGTTTTG 59.578 43.478 0.00 0.00 40.56 2.44
5733 6012 2.169832 AGCACGTAAAGCAGTGATGT 57.830 45.000 0.00 0.00 40.56 3.06
5734 6013 2.472886 CGAAGCACGTAAAGCAGTGATG 60.473 50.000 0.00 0.00 40.56 3.07
5735 6014 1.726791 CGAAGCACGTAAAGCAGTGAT 59.273 47.619 0.00 0.00 40.56 3.06
5736 6015 1.136690 CGAAGCACGTAAAGCAGTGA 58.863 50.000 0.00 0.00 40.56 3.41
5737 6016 3.639222 CGAAGCACGTAAAGCAGTG 57.361 52.632 0.00 0.00 41.01 3.66
5819 6098 1.753078 GCCGATGTTCCCCTTTCCC 60.753 63.158 0.00 0.00 0.00 3.97
5827 6106 6.371809 TTTATGTATTCTTGCCGATGTTCC 57.628 37.500 0.00 0.00 0.00 3.62
5845 6124 8.757789 ACGATGCTGCATTTTGATTTATTTATG 58.242 29.630 17.36 0.00 0.00 1.90
5870 6152 1.447314 GTGGTCGTCCGGGATTGAC 60.447 63.158 18.77 18.77 36.30 3.18
5879 6161 0.863799 GAAGGTTTTCGTGGTCGTCC 59.136 55.000 0.00 0.00 38.33 4.79
5897 6179 8.393959 AGGAGGAAGGTTAAGATATTTCAAGA 57.606 34.615 0.00 0.00 0.00 3.02
5898 6180 7.439655 CGAGGAGGAAGGTTAAGATATTTCAAG 59.560 40.741 0.00 0.00 0.00 3.02
5905 6187 2.621998 CGCGAGGAGGAAGGTTAAGATA 59.378 50.000 0.00 0.00 0.00 1.98
5913 6195 4.214327 GGAGCGCGAGGAGGAAGG 62.214 72.222 12.10 0.00 0.00 3.46
5918 6200 0.460987 AAAGATTGGAGCGCGAGGAG 60.461 55.000 12.10 0.00 0.00 3.69
5932 6214 1.227380 CCGCGAGCTAGCCAAAGAT 60.227 57.895 12.13 0.00 0.00 2.40
5943 6225 2.433318 AACAGAAGAGCCGCGAGC 60.433 61.111 8.23 9.98 44.25 5.03
5944 6226 1.807573 GGAACAGAAGAGCCGCGAG 60.808 63.158 8.23 0.00 0.00 5.03
5945 6227 2.261671 GGAACAGAAGAGCCGCGA 59.738 61.111 8.23 0.00 0.00 5.87
5946 6228 2.048222 TGGAACAGAAGAGCCGCG 60.048 61.111 0.00 0.00 0.00 6.46
5957 6239 1.676635 GGATGCTGCTGCTGGAACA 60.677 57.895 17.00 0.00 40.48 3.18
5958 6240 1.676635 TGGATGCTGCTGCTGGAAC 60.677 57.895 17.00 2.29 40.48 3.62
5959 6241 1.676635 GTGGATGCTGCTGCTGGAA 60.677 57.895 17.00 0.00 40.48 3.53
5960 6242 2.045634 GTGGATGCTGCTGCTGGA 60.046 61.111 17.00 5.90 40.48 3.86
5961 6243 2.360726 TGTGGATGCTGCTGCTGG 60.361 61.111 17.00 0.00 40.48 4.85
5962 6244 1.376812 TCTGTGGATGCTGCTGCTG 60.377 57.895 17.00 0.77 40.48 4.41
5963 6245 1.376942 GTCTGTGGATGCTGCTGCT 60.377 57.895 17.00 2.26 40.48 4.24
5964 6246 2.404995 GGTCTGTGGATGCTGCTGC 61.405 63.158 8.89 8.89 40.20 5.25
5965 6247 1.002990 TGGTCTGTGGATGCTGCTG 60.003 57.895 0.00 0.00 0.00 4.41
5966 6248 1.002868 GTGGTCTGTGGATGCTGCT 60.003 57.895 0.00 0.00 0.00 4.24
5967 6249 1.302752 TGTGGTCTGTGGATGCTGC 60.303 57.895 0.00 0.00 0.00 5.25
5968 6250 0.675837 CCTGTGGTCTGTGGATGCTG 60.676 60.000 0.00 0.00 0.00 4.41
5969 6251 0.837691 TCCTGTGGTCTGTGGATGCT 60.838 55.000 0.00 0.00 0.00 3.79
5970 6252 0.392193 CTCCTGTGGTCTGTGGATGC 60.392 60.000 0.00 0.00 0.00 3.91
5971 6253 0.392193 GCTCCTGTGGTCTGTGGATG 60.392 60.000 0.00 0.00 0.00 3.51
5972 6254 1.892819 CGCTCCTGTGGTCTGTGGAT 61.893 60.000 0.00 0.00 0.00 3.41
5973 6255 2.574018 CGCTCCTGTGGTCTGTGGA 61.574 63.158 0.00 0.00 0.00 4.02
5974 6256 2.047844 CGCTCCTGTGGTCTGTGG 60.048 66.667 0.00 0.00 0.00 4.17
5975 6257 1.373497 GACGCTCCTGTGGTCTGTG 60.373 63.158 0.00 0.00 0.00 3.66
5976 6258 1.531840 AGACGCTCCTGTGGTCTGT 60.532 57.895 0.00 0.00 0.00 3.41
5977 6259 3.371021 AGACGCTCCTGTGGTCTG 58.629 61.111 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.