Multiple sequence alignment - TraesCS5B01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G412000 chr5B 100.000 3598 0 0 1 3598 586877521 586873924 0.000000e+00 6645
1 TraesCS5B01G412000 chr5D 89.628 2632 180 52 553 3153 479156931 479154362 0.000000e+00 3262
2 TraesCS5B01G412000 chr5A 89.017 2522 159 54 553 3030 597850824 597848377 0.000000e+00 3014
3 TraesCS5B01G412000 chr5A 89.693 553 57 0 7 559 369562409 369561857 0.000000e+00 706
4 TraesCS5B01G412000 chr5A 89.762 547 56 0 7 553 213424068 213423522 0.000000e+00 701
5 TraesCS5B01G412000 chr5A 79.127 848 124 34 1364 2180 415195433 415194608 1.470000e-148 536
6 TraesCS5B01G412000 chr5A 90.226 133 12 1 3022 3153 597848348 597848216 4.780000e-39 172
7 TraesCS5B01G412000 chr3B 80.302 1061 146 40 1364 2384 800996768 800997805 0.000000e+00 743
8 TraesCS5B01G412000 chr3B 94.678 451 16 5 3152 3598 22550458 22550012 0.000000e+00 693
9 TraesCS5B01G412000 chr3B 94.420 448 18 3 3155 3598 247808972 247809416 0.000000e+00 682
10 TraesCS5B01G412000 chr2A 90.072 554 55 0 1 554 419090704 419091257 0.000000e+00 719
11 TraesCS5B01G412000 chr2A 78.184 848 124 38 1364 2180 6126454 6127271 5.400000e-133 484
12 TraesCS5B01G412000 chr2A 78.184 848 124 38 1364 2180 6177493 6178310 5.400000e-133 484
13 TraesCS5B01G412000 chr2A 77.332 847 133 39 1364 2180 6073685 6074502 2.550000e-121 446
14 TraesCS5B01G412000 chr2A 74.705 763 107 56 1058 1800 459446356 459447052 9.910000e-66 261
15 TraesCS5B01G412000 chr1A 90.328 548 52 1 7 553 562083009 562082462 0.000000e+00 717
16 TraesCS5B01G412000 chr6A 89.892 554 56 0 1 554 611336168 611336721 0.000000e+00 713
17 TraesCS5B01G412000 chr6A 89.331 553 59 0 1 553 562824398 562824950 0.000000e+00 695
18 TraesCS5B01G412000 chr6A 79.798 693 104 21 1364 2040 21697545 21696873 4.200000e-129 472
19 TraesCS5B01G412000 chr1D 89.892 554 53 3 1 553 60383333 60382782 0.000000e+00 710
20 TraesCS5B01G412000 chr6D 79.716 1055 155 39 1364 2384 306002807 306003836 0.000000e+00 708
21 TraesCS5B01G412000 chr3A 89.674 552 57 0 1 552 467348731 467349282 0.000000e+00 704
22 TraesCS5B01G412000 chr4B 89.445 559 54 4 1 559 248824801 248824248 0.000000e+00 701
23 TraesCS5B01G412000 chr4B 94.248 452 18 3 3151 3598 53068226 53068673 0.000000e+00 684
24 TraesCS5B01G412000 chr7B 94.655 449 16 3 3154 3598 638251827 638252271 0.000000e+00 689
25 TraesCS5B01G412000 chr7B 94.079 456 17 4 3146 3597 586933476 586933027 0.000000e+00 684
26 TraesCS5B01G412000 chr2B 94.631 447 17 3 3156 3598 123108468 123108911 0.000000e+00 686
27 TraesCS5B01G412000 chr2B 94.066 455 20 4 3148 3598 752456000 752456451 0.000000e+00 684
28 TraesCS5B01G412000 chr2B 93.860 456 22 3 3147 3598 9283418 9283871 0.000000e+00 682
29 TraesCS5B01G412000 chr6B 94.432 449 18 4 3154 3598 67520309 67520754 0.000000e+00 684
30 TraesCS5B01G412000 chr6B 80.000 665 95 22 1754 2384 148829162 148829822 1.180000e-124 457
31 TraesCS5B01G412000 chr6B 90.991 111 10 0 2274 2384 11708830 11708720 2.240000e-32 150
32 TraesCS5B01G412000 chr1B 79.127 1054 155 39 1364 2384 310105630 310104609 0.000000e+00 667
33 TraesCS5B01G412000 chr7A 79.594 936 131 36 1364 2266 675068627 675067719 1.840000e-172 616
34 TraesCS5B01G412000 chr7A 90.816 98 9 0 2287 2384 675066949 675066852 8.110000e-27 132
35 TraesCS5B01G412000 chr3D 78.378 851 128 34 1364 2180 126612539 126611711 5.360000e-138 501
36 TraesCS5B01G412000 chr3D 80.210 667 92 24 1754 2384 575922336 575921674 7.040000e-127 464


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G412000 chr5B 586873924 586877521 3597 True 6645 6645 100.0000 1 3598 1 chr5B.!!$R1 3597
1 TraesCS5B01G412000 chr5D 479154362 479156931 2569 True 3262 3262 89.6280 553 3153 1 chr5D.!!$R1 2600
2 TraesCS5B01G412000 chr5A 597848216 597850824 2608 True 1593 3014 89.6215 553 3153 2 chr5A.!!$R4 2600
3 TraesCS5B01G412000 chr5A 369561857 369562409 552 True 706 706 89.6930 7 559 1 chr5A.!!$R2 552
4 TraesCS5B01G412000 chr5A 213423522 213424068 546 True 701 701 89.7620 7 553 1 chr5A.!!$R1 546
5 TraesCS5B01G412000 chr5A 415194608 415195433 825 True 536 536 79.1270 1364 2180 1 chr5A.!!$R3 816
6 TraesCS5B01G412000 chr3B 800996768 800997805 1037 False 743 743 80.3020 1364 2384 1 chr3B.!!$F2 1020
7 TraesCS5B01G412000 chr2A 419090704 419091257 553 False 719 719 90.0720 1 554 1 chr2A.!!$F4 553
8 TraesCS5B01G412000 chr2A 6126454 6127271 817 False 484 484 78.1840 1364 2180 1 chr2A.!!$F2 816
9 TraesCS5B01G412000 chr2A 6177493 6178310 817 False 484 484 78.1840 1364 2180 1 chr2A.!!$F3 816
10 TraesCS5B01G412000 chr2A 6073685 6074502 817 False 446 446 77.3320 1364 2180 1 chr2A.!!$F1 816
11 TraesCS5B01G412000 chr2A 459446356 459447052 696 False 261 261 74.7050 1058 1800 1 chr2A.!!$F5 742
12 TraesCS5B01G412000 chr1A 562082462 562083009 547 True 717 717 90.3280 7 553 1 chr1A.!!$R1 546
13 TraesCS5B01G412000 chr6A 611336168 611336721 553 False 713 713 89.8920 1 554 1 chr6A.!!$F2 553
14 TraesCS5B01G412000 chr6A 562824398 562824950 552 False 695 695 89.3310 1 553 1 chr6A.!!$F1 552
15 TraesCS5B01G412000 chr6A 21696873 21697545 672 True 472 472 79.7980 1364 2040 1 chr6A.!!$R1 676
16 TraesCS5B01G412000 chr1D 60382782 60383333 551 True 710 710 89.8920 1 553 1 chr1D.!!$R1 552
17 TraesCS5B01G412000 chr6D 306002807 306003836 1029 False 708 708 79.7160 1364 2384 1 chr6D.!!$F1 1020
18 TraesCS5B01G412000 chr3A 467348731 467349282 551 False 704 704 89.6740 1 552 1 chr3A.!!$F1 551
19 TraesCS5B01G412000 chr4B 248824248 248824801 553 True 701 701 89.4450 1 559 1 chr4B.!!$R1 558
20 TraesCS5B01G412000 chr6B 148829162 148829822 660 False 457 457 80.0000 1754 2384 1 chr6B.!!$F2 630
21 TraesCS5B01G412000 chr1B 310104609 310105630 1021 True 667 667 79.1270 1364 2384 1 chr1B.!!$R1 1020
22 TraesCS5B01G412000 chr7A 675066852 675068627 1775 True 374 616 85.2050 1364 2384 2 chr7A.!!$R1 1020
23 TraesCS5B01G412000 chr3D 126611711 126612539 828 True 501 501 78.3780 1364 2180 1 chr3D.!!$R1 816
24 TraesCS5B01G412000 chr3D 575921674 575922336 662 True 464 464 80.2100 1754 2384 1 chr3D.!!$R2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 288 0.987294 CTCCTGACAAGTGGGGTCAT 59.013 55.000 0.0 0.0 43.72 3.06 F
1111 1118 1.740296 CACCCCAAGAACTACGGCG 60.740 63.158 4.8 4.8 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1288 0.369931 CGTGAATCTTGCGCATCGAA 59.630 50.0 12.75 0.00 0.0 3.71 R
2709 3553 0.609131 TAAGCAAAGTCAGGGCAGCC 60.609 55.0 1.26 1.26 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.211174 AGTTGTGTCCCACTACTTAGTTC 57.789 43.478 5.79 0.00 44.96 3.01
37 38 6.073314 AGTTGTGTCCCACTACTTAGTTCTA 58.927 40.000 5.79 0.00 44.96 2.10
83 85 8.114331 TCAAAAGTGTCATTGCTTCATTAGAT 57.886 30.769 0.00 0.00 0.00 1.98
84 86 8.579006 TCAAAAGTGTCATTGCTTCATTAGATT 58.421 29.630 0.00 0.00 0.00 2.40
114 116 1.259609 AATGCCACTGGACACCATTG 58.740 50.000 0.00 0.00 34.54 2.82
123 125 3.148412 CTGGACACCATTGTTGTGATCA 58.852 45.455 0.00 0.00 35.47 2.92
179 181 2.041620 ACTTATGGACCAACATGCCAGT 59.958 45.455 0.00 0.00 34.74 4.00
214 216 1.705186 ACTACAATCAAGTGTGGGGCT 59.295 47.619 0.00 0.00 34.50 5.19
252 254 8.845942 ACAACGTTCTTATTTTCCTGTAAAAC 57.154 30.769 0.00 0.00 39.82 2.43
286 288 0.987294 CTCCTGACAAGTGGGGTCAT 59.013 55.000 0.00 0.00 43.72 3.06
316 318 7.894753 TCATTGTGAGATAGAGAGAACTGAT 57.105 36.000 0.00 0.00 0.00 2.90
321 323 9.853177 TTGTGAGATAGAGAGAACTGATATGTA 57.147 33.333 0.00 0.00 0.00 2.29
422 424 5.009610 AGCAAACATCTAACAAAACGATGGT 59.990 36.000 0.00 0.00 39.00 3.55
424 426 6.858993 GCAAACATCTAACAAAACGATGGTAA 59.141 34.615 0.00 0.00 39.00 2.85
578 580 6.433404 AGATTTAGAAACTCGGTGTAGAGACA 59.567 38.462 0.62 0.00 40.57 3.41
589 593 3.194542 GGTGTAGAGACATGACTGCTCTT 59.805 47.826 1.41 0.00 38.04 2.85
608 612 7.628234 TGCTCTTTCAATCTCTAGAAATTCCT 58.372 34.615 0.00 0.00 33.69 3.36
640 645 7.576750 TGACAGTTTTAAGCATCGTTAGTAG 57.423 36.000 0.00 0.00 0.00 2.57
641 646 6.588756 TGACAGTTTTAAGCATCGTTAGTAGG 59.411 38.462 0.00 0.00 0.00 3.18
642 647 6.694447 ACAGTTTTAAGCATCGTTAGTAGGA 58.306 36.000 0.00 0.00 0.00 2.94
653 659 6.755141 GCATCGTTAGTAGGAGTATTTGTTGA 59.245 38.462 0.00 0.00 0.00 3.18
811 817 7.841915 ACGAAATTTGGAGTTTGAAAAACAT 57.158 28.000 7.24 0.00 0.00 2.71
854 860 3.514362 CAATTACCGGGCCGTGGC 61.514 66.667 26.32 1.16 41.06 5.01
982 989 2.328155 TATAGAAAACCCGGCGCCCC 62.328 60.000 23.46 0.00 0.00 5.80
1111 1118 1.740296 CACCCCAAGAACTACGGCG 60.740 63.158 4.80 4.80 0.00 6.46
1189 1196 3.072468 TTGTACCCCGCCCTCTCG 61.072 66.667 0.00 0.00 0.00 4.04
1287 1295 7.618964 TCTTATATACTCGTGTTTTCGATGC 57.381 36.000 0.00 0.00 39.12 3.91
1305 1313 2.401195 GCAAGATTCACGCGCCTC 59.599 61.111 5.73 0.00 0.00 4.70
1306 1314 2.697425 CAAGATTCACGCGCCTCG 59.303 61.111 5.73 0.00 45.38 4.63
1335 1343 2.733956 TGATGGTTTTATGCCCTGACC 58.266 47.619 0.00 0.00 0.00 4.02
1337 1345 0.780637 TGGTTTTATGCCCTGACCCA 59.219 50.000 0.00 0.00 0.00 4.51
1502 1514 5.371526 TGTCTATGGATTTCCTGAATCTGC 58.628 41.667 0.00 0.00 43.08 4.26
1505 1517 1.065199 TGGATTTCCTGAATCTGCGCT 60.065 47.619 9.73 0.00 43.08 5.92
1552 1564 5.489792 ACTAGTATATGTCCCCATGCTTG 57.510 43.478 0.00 0.00 32.29 4.01
1566 1578 5.012354 CCCCATGCTTGGCTTTGAATAATAT 59.988 40.000 13.15 0.00 42.15 1.28
1567 1579 6.211184 CCCCATGCTTGGCTTTGAATAATATA 59.789 38.462 13.15 0.00 42.15 0.86
1568 1580 7.092716 CCCATGCTTGGCTTTGAATAATATAC 58.907 38.462 13.15 0.00 42.15 1.47
1569 1581 6.803320 CCATGCTTGGCTTTGAATAATATACG 59.197 38.462 5.58 0.00 35.85 3.06
1629 1641 7.660208 GGTGAACCAGTCTTAATTTGTTAGAGA 59.340 37.037 0.00 0.00 35.64 3.10
1635 1647 9.930693 CCAGTCTTAATTTGTTAGAGAACTACT 57.069 33.333 0.00 0.00 36.45 2.57
1669 1681 4.062293 TGAGTTGTTACATACTGTGGTGC 58.938 43.478 5.26 0.00 0.00 5.01
1678 1690 4.588899 ACATACTGTGGTGCATTGTATGT 58.411 39.130 18.42 18.42 44.74 2.29
1716 1728 9.979270 CACTTATTCAGATTAGATTTGTGTGTC 57.021 33.333 0.00 0.00 0.00 3.67
1723 1735 0.687354 AGATTTGTGTGTCGCCCTCT 59.313 50.000 0.00 0.00 0.00 3.69
1725 1737 1.197721 GATTTGTGTGTCGCCCTCTTG 59.802 52.381 0.00 0.00 0.00 3.02
1732 1748 1.446966 GTCGCCCTCTTGACAGAGC 60.447 63.158 0.00 0.00 44.96 4.09
1750 1788 3.801114 AGCAAACCTGGTCAAGTTTTC 57.199 42.857 0.00 0.00 34.02 2.29
1844 1885 1.064166 AGGCATCTTGGAATGGACAGG 60.064 52.381 0.00 0.00 0.00 4.00
1885 1933 3.470645 ACTAGCTCCGTTTGTTGTTCT 57.529 42.857 0.00 0.00 0.00 3.01
1887 1935 2.622064 AGCTCCGTTTGTTGTTCTCT 57.378 45.000 0.00 0.00 0.00 3.10
1920 1968 2.936919 AAGTCTGTTGCATCTGTCCA 57.063 45.000 0.00 0.00 0.00 4.02
1932 1980 3.316308 GCATCTGTCCACAGTTTCAACTT 59.684 43.478 6.61 0.00 44.12 2.66
1989 2043 1.477700 ACCGGTCCATTTCAATGCATG 59.522 47.619 0.00 0.00 35.08 4.06
2055 2111 5.064707 AGGCATATACTTGCGTAACAACTTG 59.935 40.000 0.00 0.00 43.71 3.16
2056 2112 5.163794 GGCATATACTTGCGTAACAACTTGT 60.164 40.000 0.00 0.00 43.71 3.16
2057 2113 6.036300 GGCATATACTTGCGTAACAACTTGTA 59.964 38.462 0.00 0.00 43.71 2.41
2058 2114 6.898189 GCATATACTTGCGTAACAACTTGTAC 59.102 38.462 0.00 0.00 33.68 2.90
2222 2306 4.816385 ACCTGAATGTTTGTGTGTGACTAG 59.184 41.667 0.00 0.00 0.00 2.57
2238 2322 7.333423 TGTGTGACTAGTTTATTGTATGCCTTC 59.667 37.037 0.00 0.00 0.00 3.46
2451 3293 3.636282 AAACCGTGAAACCATGTTAGC 57.364 42.857 0.00 0.00 0.00 3.09
2596 3439 9.208022 TGATGCTCTAATTTTATATTCCTCGTG 57.792 33.333 0.00 0.00 0.00 4.35
2597 3440 9.209175 GATGCTCTAATTTTATATTCCTCGTGT 57.791 33.333 0.00 0.00 0.00 4.49
2598 3441 8.365399 TGCTCTAATTTTATATTCCTCGTGTG 57.635 34.615 0.00 0.00 0.00 3.82
2607 3450 5.871396 ATATTCCTCGTGTGTTCATACCT 57.129 39.130 0.00 0.00 0.00 3.08
2621 3464 2.146342 CATACCTATTCTTGCCTGGCG 58.854 52.381 14.98 0.00 0.00 5.69
2664 3508 4.578516 TGCTGTGCTCTACTATTCTCTCTC 59.421 45.833 0.00 0.00 0.00 3.20
2665 3509 4.821805 GCTGTGCTCTACTATTCTCTCTCT 59.178 45.833 0.00 0.00 0.00 3.10
2672 3516 8.214364 TGCTCTACTATTCTCTCTCTGTGATTA 58.786 37.037 0.00 0.00 0.00 1.75
2709 3553 4.804108 TGTTTGTTGAACAGTTGTCCTTG 58.196 39.130 0.00 0.00 43.13 3.61
2740 3584 7.247019 CCTGACTTTGCTTAAGCTAGAAAATC 58.753 38.462 26.90 18.06 42.66 2.17
2850 3694 7.865706 AGTGGAATTATTAGTTGGTCACATC 57.134 36.000 0.00 0.00 0.00 3.06
2868 3714 7.065923 GGTCACATCTAAAAACCTAGAATCCAC 59.934 40.741 0.00 0.00 31.76 4.02
2869 3715 7.824779 GTCACATCTAAAAACCTAGAATCCACT 59.175 37.037 0.00 0.00 31.76 4.00
2870 3716 7.824289 TCACATCTAAAAACCTAGAATCCACTG 59.176 37.037 0.00 0.00 31.76 3.66
2908 3758 2.490217 CGACTGTCCTGCTACCGG 59.510 66.667 0.00 0.00 0.00 5.28
2929 3779 2.465813 CCATATTTTGCCACCTCCCAA 58.534 47.619 0.00 0.00 0.00 4.12
2949 3799 4.181578 CAAATGGTTAGAACTCGTCGGAT 58.818 43.478 0.00 0.00 0.00 4.18
2950 3800 5.345702 CAAATGGTTAGAACTCGTCGGATA 58.654 41.667 0.00 0.00 0.00 2.59
2973 3823 3.323403 CCAACAATTTCTTTGCCACCCTA 59.677 43.478 0.00 0.00 39.03 3.53
2980 3830 2.802719 TCTTTGCCACCCTATTGTTCC 58.197 47.619 0.00 0.00 0.00 3.62
2984 3834 3.182887 TGCCACCCTATTGTTCCAATT 57.817 42.857 0.00 0.00 0.00 2.32
3048 3938 4.099573 ACGATACCTGTATCCCACTCAAAG 59.900 45.833 10.82 0.00 38.91 2.77
3052 3942 5.836024 ACCTGTATCCCACTCAAAGTTTA 57.164 39.130 0.00 0.00 0.00 2.01
3059 3949 3.255642 TCCCACTCAAAGTTTAAGCATGC 59.744 43.478 10.51 10.51 0.00 4.06
3080 3970 5.231702 TGCATCACATTGTCAAAATTGAGG 58.768 37.500 0.00 0.00 37.98 3.86
3113 4003 2.717639 AGGTGTGCTTTCTGTTGTCT 57.282 45.000 0.00 0.00 0.00 3.41
3135 4025 6.198216 GTCTTTTTGTATTTGTGCGTGAACAT 59.802 34.615 0.00 0.00 0.00 2.71
3136 4026 6.754209 TCTTTTTGTATTTGTGCGTGAACATT 59.246 30.769 0.00 0.00 0.00 2.71
3140 4030 5.389778 TGTATTTGTGCGTGAACATTCATC 58.610 37.500 0.00 0.00 39.73 2.92
3145 4035 2.480037 GTGCGTGAACATTCATCAGTGA 59.520 45.455 0.00 0.00 39.73 3.41
3153 4043 9.345517 CGTGAACATTCATCAGTGAAATTATTT 57.654 29.630 0.00 0.00 46.67 1.40
3158 4048 9.439500 ACATTCATCAGTGAAATTATTTTTGGG 57.561 29.630 0.00 0.00 46.67 4.12
3159 4049 9.439500 CATTCATCAGTGAAATTATTTTTGGGT 57.561 29.630 0.00 0.00 46.67 4.51
3160 4050 9.657419 ATTCATCAGTGAAATTATTTTTGGGTC 57.343 29.630 0.00 0.00 46.67 4.46
3161 4051 7.312154 TCATCAGTGAAATTATTTTTGGGTCG 58.688 34.615 0.00 0.00 0.00 4.79
3162 4052 5.465935 TCAGTGAAATTATTTTTGGGTCGC 58.534 37.500 0.00 0.00 0.00 5.19
3163 4053 5.010112 TCAGTGAAATTATTTTTGGGTCGCA 59.990 36.000 0.00 0.00 0.00 5.10
3164 4054 5.118510 CAGTGAAATTATTTTTGGGTCGCAC 59.881 40.000 0.00 0.00 0.00 5.34
3165 4055 5.010617 AGTGAAATTATTTTTGGGTCGCACT 59.989 36.000 0.00 0.00 0.00 4.40
3166 4056 6.207810 AGTGAAATTATTTTTGGGTCGCACTA 59.792 34.615 0.00 0.00 30.79 2.74
3167 4057 6.864165 GTGAAATTATTTTTGGGTCGCACTAA 59.136 34.615 0.00 0.00 0.00 2.24
3168 4058 6.864165 TGAAATTATTTTTGGGTCGCACTAAC 59.136 34.615 0.00 0.00 0.00 2.34
3169 4059 6.584185 AATTATTTTTGGGTCGCACTAACT 57.416 33.333 0.00 0.00 0.00 2.24
3170 4060 3.915437 ATTTTTGGGTCGCACTAACTG 57.085 42.857 0.00 0.00 0.00 3.16
3171 4061 0.948678 TTTTGGGTCGCACTAACTGC 59.051 50.000 0.00 0.00 43.21 4.40
3172 4062 0.887387 TTTGGGTCGCACTAACTGCC 60.887 55.000 0.00 0.00 43.84 4.85
3173 4063 2.046009 TTGGGTCGCACTAACTGCCA 62.046 55.000 0.00 0.00 43.84 4.92
3174 4064 2.033194 GGGTCGCACTAACTGCCAC 61.033 63.158 0.00 0.00 43.84 5.01
3175 4065 1.301401 GGTCGCACTAACTGCCACA 60.301 57.895 0.00 0.00 43.84 4.17
3176 4066 1.566018 GGTCGCACTAACTGCCACAC 61.566 60.000 0.00 0.00 43.84 3.82
3177 4067 1.663388 TCGCACTAACTGCCACACG 60.663 57.895 0.00 0.00 43.84 4.49
3178 4068 1.954146 CGCACTAACTGCCACACGT 60.954 57.895 0.00 0.00 43.84 4.49
3179 4069 1.569493 GCACTAACTGCCACACGTG 59.431 57.895 15.48 15.48 40.42 4.49
3180 4070 1.157870 GCACTAACTGCCACACGTGT 61.158 55.000 17.22 17.22 40.42 4.49
3181 4071 0.581529 CACTAACTGCCACACGTGTG 59.418 55.000 36.13 36.13 45.23 3.82
3189 4079 2.666190 CACACGTGTGGCAGGGAG 60.666 66.667 35.65 12.08 42.10 4.30
3190 4080 2.842462 ACACGTGTGGCAGGGAGA 60.842 61.111 22.71 0.00 34.19 3.71
3191 4081 2.357517 CACGTGTGGCAGGGAGAC 60.358 66.667 7.58 0.00 0.00 3.36
3192 4082 3.991051 ACGTGTGGCAGGGAGACG 61.991 66.667 0.00 0.00 36.14 4.18
3194 4084 4.314440 GTGTGGCAGGGAGACGCA 62.314 66.667 0.00 0.00 45.41 5.24
3195 4085 3.321648 TGTGGCAGGGAGACGCAT 61.322 61.111 0.00 0.00 41.93 4.73
3196 4086 2.512515 GTGGCAGGGAGACGCATC 60.513 66.667 0.00 0.00 35.19 3.91
3197 4087 3.002583 TGGCAGGGAGACGCATCA 61.003 61.111 0.00 0.00 0.00 3.07
3198 4088 2.369633 TGGCAGGGAGACGCATCAT 61.370 57.895 0.00 0.00 0.00 2.45
3199 4089 1.048160 TGGCAGGGAGACGCATCATA 61.048 55.000 0.00 0.00 0.00 2.15
3200 4090 0.601311 GGCAGGGAGACGCATCATAC 60.601 60.000 0.00 0.00 0.00 2.39
3201 4091 0.941463 GCAGGGAGACGCATCATACG 60.941 60.000 0.00 0.00 0.00 3.06
3203 4093 1.112113 AGGGAGACGCATCATACGTT 58.888 50.000 0.00 0.00 45.24 3.99
3204 4094 1.480954 AGGGAGACGCATCATACGTTT 59.519 47.619 0.00 0.00 45.24 3.60
3205 4095 1.859080 GGGAGACGCATCATACGTTTC 59.141 52.381 0.00 0.00 45.24 2.78
3206 4096 2.481449 GGGAGACGCATCATACGTTTCT 60.481 50.000 0.00 0.00 45.24 2.52
3207 4097 3.243301 GGGAGACGCATCATACGTTTCTA 60.243 47.826 0.00 0.00 45.24 2.10
3208 4098 4.357142 GGAGACGCATCATACGTTTCTAA 58.643 43.478 0.00 0.00 45.24 2.10
3209 4099 4.982916 GGAGACGCATCATACGTTTCTAAT 59.017 41.667 0.00 0.00 45.24 1.73
3210 4100 5.107837 GGAGACGCATCATACGTTTCTAATG 60.108 44.000 0.00 0.00 45.24 1.90
3211 4101 5.348986 AGACGCATCATACGTTTCTAATGT 58.651 37.500 0.00 0.00 45.24 2.71
3212 4102 6.500910 AGACGCATCATACGTTTCTAATGTA 58.499 36.000 0.00 0.00 45.24 2.29
3213 4103 6.976349 AGACGCATCATACGTTTCTAATGTAA 59.024 34.615 0.00 0.00 45.24 2.41
3214 4104 7.490079 AGACGCATCATACGTTTCTAATGTAAA 59.510 33.333 0.00 0.00 45.24 2.01
3215 4105 7.396419 ACGCATCATACGTTTCTAATGTAAAC 58.604 34.615 0.00 0.00 41.93 2.01
3216 4106 7.063662 ACGCATCATACGTTTCTAATGTAAACA 59.936 33.333 0.00 0.00 41.93 2.83
3217 4107 7.579093 CGCATCATACGTTTCTAATGTAAACAG 59.421 37.037 0.00 0.00 36.54 3.16
3218 4108 8.600625 GCATCATACGTTTCTAATGTAAACAGA 58.399 33.333 0.00 0.00 36.54 3.41
3222 4112 9.210426 CATACGTTTCTAATGTAAACAGATTGC 57.790 33.333 0.00 0.00 36.54 3.56
3223 4113 6.608610 ACGTTTCTAATGTAAACAGATTGCC 58.391 36.000 0.00 0.00 36.78 4.52
3224 4114 6.205853 ACGTTTCTAATGTAAACAGATTGCCA 59.794 34.615 0.00 0.00 36.78 4.92
3225 4115 6.523201 CGTTTCTAATGTAAACAGATTGCCAC 59.477 38.462 0.00 0.00 36.78 5.01
3226 4116 5.794687 TCTAATGTAAACAGATTGCCACG 57.205 39.130 0.00 0.00 0.00 4.94
3227 4117 5.242434 TCTAATGTAAACAGATTGCCACGT 58.758 37.500 0.00 0.00 0.00 4.49
3228 4118 4.419522 AATGTAAACAGATTGCCACGTC 57.580 40.909 0.00 0.00 0.00 4.34
3229 4119 2.839975 TGTAAACAGATTGCCACGTCA 58.160 42.857 0.00 0.00 0.00 4.35
3230 4120 3.407698 TGTAAACAGATTGCCACGTCAT 58.592 40.909 0.00 0.00 0.00 3.06
3231 4121 3.435327 TGTAAACAGATTGCCACGTCATC 59.565 43.478 0.00 0.00 0.00 2.92
3232 4122 1.078709 AACAGATTGCCACGTCATCG 58.921 50.000 0.00 0.00 43.34 3.84
3233 4123 1.349627 CAGATTGCCACGTCATCGC 59.650 57.895 0.00 0.00 41.18 4.58
3234 4124 1.079197 AGATTGCCACGTCATCGCA 60.079 52.632 0.00 0.00 41.18 5.10
3235 4125 0.462581 AGATTGCCACGTCATCGCAT 60.463 50.000 0.00 0.00 41.18 4.73
3236 4126 0.316442 GATTGCCACGTCATCGCATG 60.316 55.000 0.00 0.00 41.18 4.06
3237 4127 2.327002 ATTGCCACGTCATCGCATGC 62.327 55.000 7.91 7.91 41.18 4.06
3238 4128 3.498834 GCCACGTCATCGCATGCA 61.499 61.111 19.57 5.34 41.18 3.96
3239 4129 2.827051 GCCACGTCATCGCATGCAT 61.827 57.895 19.57 7.64 41.18 3.96
3240 4130 1.010462 CCACGTCATCGCATGCATG 60.010 57.895 22.70 22.70 41.18 4.06
3241 4131 1.010462 CACGTCATCGCATGCATGG 60.010 57.895 27.34 17.21 41.18 3.66
3242 4132 1.153389 ACGTCATCGCATGCATGGA 60.153 52.632 27.34 21.50 41.18 3.41
3243 4133 0.533531 ACGTCATCGCATGCATGGAT 60.534 50.000 27.34 22.62 41.18 3.41
3244 4134 0.110373 CGTCATCGCATGCATGGATG 60.110 55.000 31.67 31.67 37.09 3.51
3334 4224 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
3335 4225 5.592104 ATCCGTTTTCACCATTAAATCCC 57.408 39.130 0.00 0.00 0.00 3.85
3336 4226 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
3337 4227 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
3338 4228 4.438200 CCGTTTTCACCATTAAATCCCTCG 60.438 45.833 0.00 0.00 0.00 4.63
3339 4229 4.421058 GTTTTCACCATTAAATCCCTCGC 58.579 43.478 0.00 0.00 0.00 5.03
3340 4230 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
3341 4231 1.483004 TCACCATTAAATCCCTCGCGA 59.517 47.619 9.26 9.26 0.00 5.87
3342 4232 1.597663 CACCATTAAATCCCTCGCGAC 59.402 52.381 3.71 0.00 0.00 5.19
3343 4233 0.859232 CCATTAAATCCCTCGCGACG 59.141 55.000 3.71 0.04 0.00 5.12
3344 4234 1.537348 CCATTAAATCCCTCGCGACGA 60.537 52.381 3.71 3.75 0.00 4.20
3367 4257 7.183580 GAGATTTTCGAAACTAGATCCCATG 57.816 40.000 10.79 0.00 0.00 3.66
3368 4258 6.653989 AGATTTTCGAAACTAGATCCCATGT 58.346 36.000 10.79 0.00 0.00 3.21
3369 4259 7.112779 AGATTTTCGAAACTAGATCCCATGTT 58.887 34.615 10.79 0.00 0.00 2.71
3370 4260 6.494893 TTTTCGAAACTAGATCCCATGTTG 57.505 37.500 10.79 0.00 0.00 3.33
3371 4261 5.414789 TTCGAAACTAGATCCCATGTTGA 57.585 39.130 0.00 0.00 0.00 3.18
3372 4262 5.614324 TCGAAACTAGATCCCATGTTGAT 57.386 39.130 0.00 0.00 0.00 2.57
3373 4263 6.724893 TCGAAACTAGATCCCATGTTGATA 57.275 37.500 0.00 0.00 0.00 2.15
3374 4264 7.303182 TCGAAACTAGATCCCATGTTGATAT 57.697 36.000 0.00 0.00 0.00 1.63
3375 4265 7.154656 TCGAAACTAGATCCCATGTTGATATG 58.845 38.462 0.00 0.00 0.00 1.78
3376 4266 6.931281 CGAAACTAGATCCCATGTTGATATGT 59.069 38.462 0.00 0.00 0.00 2.29
3377 4267 7.442364 CGAAACTAGATCCCATGTTGATATGTT 59.558 37.037 0.00 0.00 0.00 2.71
3378 4268 9.125026 GAAACTAGATCCCATGTTGATATGTTT 57.875 33.333 0.00 13.42 0.00 2.83
3379 4269 9.479549 AAACTAGATCCCATGTTGATATGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
3380 4270 8.455903 ACTAGATCCCATGTTGATATGTTTTG 57.544 34.615 0.00 0.00 0.00 2.44
3381 4271 8.274322 ACTAGATCCCATGTTGATATGTTTTGA 58.726 33.333 0.00 0.00 0.00 2.69
3382 4272 9.293404 CTAGATCCCATGTTGATATGTTTTGAT 57.707 33.333 0.00 0.00 0.00 2.57
3383 4273 7.948357 AGATCCCATGTTGATATGTTTTGATG 58.052 34.615 0.00 0.00 0.00 3.07
3384 4274 7.781219 AGATCCCATGTTGATATGTTTTGATGA 59.219 33.333 0.00 0.00 0.00 2.92
3385 4275 7.715266 TCCCATGTTGATATGTTTTGATGAA 57.285 32.000 0.00 0.00 0.00 2.57
3386 4276 8.308851 TCCCATGTTGATATGTTTTGATGAAT 57.691 30.769 0.00 0.00 0.00 2.57
3387 4277 8.760735 TCCCATGTTGATATGTTTTGATGAATT 58.239 29.630 0.00 0.00 0.00 2.17
3388 4278 9.386010 CCCATGTTGATATGTTTTGATGAATTT 57.614 29.630 0.00 0.00 0.00 1.82
3415 4305 7.489574 TTTTTGGATTAAAAGTTGCCATGTC 57.510 32.000 0.00 0.00 39.29 3.06
3416 4306 6.418057 TTTGGATTAAAAGTTGCCATGTCT 57.582 33.333 0.00 0.00 0.00 3.41
3417 4307 7.531857 TTTGGATTAAAAGTTGCCATGTCTA 57.468 32.000 0.00 0.00 0.00 2.59
3418 4308 7.716799 TTGGATTAAAAGTTGCCATGTCTAT 57.283 32.000 0.00 0.00 0.00 1.98
3419 4309 7.716799 TGGATTAAAAGTTGCCATGTCTATT 57.283 32.000 0.00 0.00 0.00 1.73
3420 4310 7.546358 TGGATTAAAAGTTGCCATGTCTATTG 58.454 34.615 0.00 0.00 0.00 1.90
3421 4311 6.476706 GGATTAAAAGTTGCCATGTCTATTGC 59.523 38.462 0.00 0.00 0.00 3.56
3422 4312 4.870123 AAAAGTTGCCATGTCTATTGCA 57.130 36.364 0.00 0.00 33.58 4.08
3423 4313 5.410355 AAAAGTTGCCATGTCTATTGCAT 57.590 34.783 0.00 0.00 35.21 3.96
3424 4314 6.528537 AAAAGTTGCCATGTCTATTGCATA 57.471 33.333 0.00 0.00 35.21 3.14
3425 4315 6.720112 AAAGTTGCCATGTCTATTGCATAT 57.280 33.333 0.00 0.00 35.21 1.78
3426 4316 5.700722 AGTTGCCATGTCTATTGCATATG 57.299 39.130 0.00 0.00 35.21 1.78
3427 4317 5.379187 AGTTGCCATGTCTATTGCATATGA 58.621 37.500 6.97 0.00 35.21 2.15
3428 4318 5.829391 AGTTGCCATGTCTATTGCATATGAA 59.171 36.000 6.97 0.00 35.21 2.57
3429 4319 6.492429 AGTTGCCATGTCTATTGCATATGAAT 59.508 34.615 6.97 6.30 35.21 2.57
3430 4320 6.904463 TGCCATGTCTATTGCATATGAATT 57.096 33.333 6.97 0.00 30.76 2.17
3431 4321 6.683715 TGCCATGTCTATTGCATATGAATTG 58.316 36.000 6.97 5.20 30.76 2.32
3432 4322 5.575606 GCCATGTCTATTGCATATGAATTGC 59.424 40.000 6.97 0.00 40.55 3.56
3433 4323 6.097356 CCATGTCTATTGCATATGAATTGCC 58.903 40.000 6.97 0.00 39.39 4.52
3434 4324 6.294843 CCATGTCTATTGCATATGAATTGCCA 60.295 38.462 6.97 1.96 39.39 4.92
3435 4325 6.904463 TGTCTATTGCATATGAATTGCCAT 57.096 33.333 6.97 0.00 39.39 4.40
3436 4326 6.683715 TGTCTATTGCATATGAATTGCCATG 58.316 36.000 6.97 0.00 39.39 3.66
3437 4327 6.490721 TGTCTATTGCATATGAATTGCCATGA 59.509 34.615 6.97 0.00 39.39 3.07
3438 4328 7.177744 TGTCTATTGCATATGAATTGCCATGAT 59.822 33.333 6.97 0.00 39.39 2.45
3439 4329 7.488150 GTCTATTGCATATGAATTGCCATGATG 59.512 37.037 6.97 0.00 39.39 3.07
3440 4330 5.538849 TTGCATATGAATTGCCATGATGT 57.461 34.783 6.97 0.00 39.39 3.06
3441 4331 5.538849 TGCATATGAATTGCCATGATGTT 57.461 34.783 6.97 0.00 39.39 2.71
3442 4332 5.919755 TGCATATGAATTGCCATGATGTTT 58.080 33.333 6.97 0.00 39.39 2.83
3443 4333 7.052142 TGCATATGAATTGCCATGATGTTTA 57.948 32.000 6.97 0.00 39.39 2.01
3444 4334 6.924612 TGCATATGAATTGCCATGATGTTTAC 59.075 34.615 6.97 0.00 39.39 2.01
3445 4335 6.924612 GCATATGAATTGCCATGATGTTTACA 59.075 34.615 6.97 0.00 33.95 2.41
3446 4336 7.095940 GCATATGAATTGCCATGATGTTTACAC 60.096 37.037 6.97 0.00 33.95 2.90
3447 4337 5.981088 TGAATTGCCATGATGTTTACACT 57.019 34.783 0.00 0.00 0.00 3.55
3448 4338 5.712004 TGAATTGCCATGATGTTTACACTG 58.288 37.500 0.00 0.00 0.00 3.66
3449 4339 5.476254 TGAATTGCCATGATGTTTACACTGA 59.524 36.000 0.00 0.00 0.00 3.41
3450 4340 5.981088 ATTGCCATGATGTTTACACTGAA 57.019 34.783 0.00 0.00 0.00 3.02
3451 4341 5.375417 TTGCCATGATGTTTACACTGAAG 57.625 39.130 0.00 0.00 0.00 3.02
3452 4342 4.397420 TGCCATGATGTTTACACTGAAGT 58.603 39.130 0.00 0.00 0.00 3.01
3453 4343 4.826733 TGCCATGATGTTTACACTGAAGTT 59.173 37.500 0.00 0.00 0.00 2.66
3454 4344 5.156355 GCCATGATGTTTACACTGAAGTTG 58.844 41.667 0.00 0.00 0.00 3.16
3455 4345 5.156355 CCATGATGTTTACACTGAAGTTGC 58.844 41.667 0.00 0.00 0.00 4.17
3456 4346 4.829064 TGATGTTTACACTGAAGTTGCC 57.171 40.909 0.00 0.00 0.00 4.52
3457 4347 4.203226 TGATGTTTACACTGAAGTTGCCA 58.797 39.130 0.00 0.00 0.00 4.92
3458 4348 4.826733 TGATGTTTACACTGAAGTTGCCAT 59.173 37.500 0.00 0.00 0.00 4.40
3459 4349 4.566545 TGTTTACACTGAAGTTGCCATG 57.433 40.909 0.00 0.00 0.00 3.66
3460 4350 4.203226 TGTTTACACTGAAGTTGCCATGA 58.797 39.130 0.00 0.00 0.00 3.07
3461 4351 4.826733 TGTTTACACTGAAGTTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
3462 4352 6.000840 TGTTTACACTGAAGTTGCCATGATA 58.999 36.000 0.00 0.00 0.00 2.15
3463 4353 6.658816 TGTTTACACTGAAGTTGCCATGATAT 59.341 34.615 0.00 0.00 0.00 1.63
3464 4354 6.682423 TTACACTGAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
3465 4355 4.592942 ACACTGAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
3466 4356 5.012239 ACACTGAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
3467 4357 5.477984 ACACTGAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
3468 4358 6.032094 CACTGAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
3469 4359 5.711506 ACTGAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
3470 4360 6.127814 ACTGAAGTTGCCATGATATGTTTCAG 60.128 38.462 16.88 16.88 42.68 3.02
3471 4361 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
3472 4362 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
3473 4363 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
3474 4364 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
3475 4365 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
3476 4366 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
3477 4367 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
3478 4368 7.428020 TGCCATGATATGTTTCAGCTATTTTC 58.572 34.615 0.00 0.00 0.00 2.29
3479 4369 7.286087 TGCCATGATATGTTTCAGCTATTTTCT 59.714 33.333 0.00 0.00 0.00 2.52
3480 4370 8.139989 GCCATGATATGTTTCAGCTATTTTCTT 58.860 33.333 0.00 0.00 0.00 2.52
3481 4371 9.674824 CCATGATATGTTTCAGCTATTTTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
3521 4411 9.780186 AAATTTTGACATTTATAAAACGGGGAA 57.220 25.926 1.21 0.00 0.00 3.97
3522 4412 9.952030 AATTTTGACATTTATAAAACGGGGAAT 57.048 25.926 1.21 0.00 0.00 3.01
3523 4413 9.952030 ATTTTGACATTTATAAAACGGGGAATT 57.048 25.926 1.21 0.00 0.00 2.17
3527 4417 9.463902 TGACATTTATAAAACGGGGAATTAAGA 57.536 29.630 1.21 0.00 0.00 2.10
3535 4425 7.444629 AAAACGGGGAATTAAGAAACTAGAC 57.555 36.000 0.00 0.00 0.00 2.59
3536 4426 6.370186 AACGGGGAATTAAGAAACTAGACT 57.630 37.500 0.00 0.00 0.00 3.24
3537 4427 6.370186 ACGGGGAATTAAGAAACTAGACTT 57.630 37.500 0.00 1.96 0.00 3.01
3538 4428 6.171213 ACGGGGAATTAAGAAACTAGACTTG 58.829 40.000 0.00 0.00 0.00 3.16
3539 4429 5.064834 CGGGGAATTAAGAAACTAGACTTGC 59.935 44.000 0.00 0.00 0.00 4.01
3540 4430 5.064834 GGGGAATTAAGAAACTAGACTTGCG 59.935 44.000 0.00 0.00 0.00 4.85
3541 4431 5.873164 GGGAATTAAGAAACTAGACTTGCGA 59.127 40.000 0.00 0.00 0.00 5.10
3542 4432 6.539103 GGGAATTAAGAAACTAGACTTGCGAT 59.461 38.462 0.00 0.00 0.00 4.58
3543 4433 7.065923 GGGAATTAAGAAACTAGACTTGCGATT 59.934 37.037 0.00 2.90 0.00 3.34
3544 4434 9.095065 GGAATTAAGAAACTAGACTTGCGATTA 57.905 33.333 0.00 0.00 0.00 1.75
3547 4437 6.723131 AAGAAACTAGACTTGCGATTAACC 57.277 37.500 0.00 0.00 0.00 2.85
3548 4438 5.790593 AGAAACTAGACTTGCGATTAACCA 58.209 37.500 0.00 0.00 0.00 3.67
3549 4439 6.407202 AGAAACTAGACTTGCGATTAACCAT 58.593 36.000 0.00 0.00 0.00 3.55
3550 4440 7.553334 AGAAACTAGACTTGCGATTAACCATA 58.447 34.615 0.00 0.00 0.00 2.74
3551 4441 8.038944 AGAAACTAGACTTGCGATTAACCATAA 58.961 33.333 0.00 0.00 0.00 1.90
3552 4442 8.556213 AAACTAGACTTGCGATTAACCATAAA 57.444 30.769 0.00 0.00 0.00 1.40
3553 4443 7.535489 ACTAGACTTGCGATTAACCATAAAC 57.465 36.000 0.00 0.00 0.00 2.01
3554 4444 7.328737 ACTAGACTTGCGATTAACCATAAACT 58.671 34.615 0.00 0.00 0.00 2.66
3555 4445 8.472413 ACTAGACTTGCGATTAACCATAAACTA 58.528 33.333 0.00 0.00 0.00 2.24
3556 4446 9.309516 CTAGACTTGCGATTAACCATAAACTAA 57.690 33.333 0.00 0.00 0.00 2.24
3557 4447 8.556213 AGACTTGCGATTAACCATAAACTAAA 57.444 30.769 0.00 0.00 0.00 1.85
3558 4448 9.005777 AGACTTGCGATTAACCATAAACTAAAA 57.994 29.630 0.00 0.00 0.00 1.52
3559 4449 9.783256 GACTTGCGATTAACCATAAACTAAAAT 57.217 29.630 0.00 0.00 0.00 1.82
3562 4452 8.401046 TGCGATTAACCATAAACTAAAATTGC 57.599 30.769 0.00 0.00 34.36 3.56
3563 4453 8.247562 TGCGATTAACCATAAACTAAAATTGCT 58.752 29.630 0.00 0.00 34.69 3.91
3564 4454 9.724839 GCGATTAACCATAAACTAAAATTGCTA 57.275 29.630 0.00 0.00 32.16 3.49
3576 4466 9.520204 AAACTAAAATTGCTATGATACATGCAC 57.480 29.630 0.00 0.00 35.01 4.57
3577 4467 7.355017 ACTAAAATTGCTATGATACATGCACG 58.645 34.615 0.00 0.00 35.01 5.34
3578 4468 5.756195 AAATTGCTATGATACATGCACGT 57.244 34.783 0.00 0.00 35.01 4.49
3579 4469 6.859420 AAATTGCTATGATACATGCACGTA 57.141 33.333 0.00 0.00 35.01 3.57
3580 4470 6.859420 AATTGCTATGATACATGCACGTAA 57.141 33.333 0.00 0.00 35.01 3.18
3581 4471 6.859420 ATTGCTATGATACATGCACGTAAA 57.141 33.333 0.00 0.00 35.01 2.01
3582 4472 6.670077 TTGCTATGATACATGCACGTAAAA 57.330 33.333 0.00 0.00 35.01 1.52
3583 4473 6.859420 TGCTATGATACATGCACGTAAAAT 57.141 33.333 0.00 0.00 0.00 1.82
3584 4474 7.258022 TGCTATGATACATGCACGTAAAATT 57.742 32.000 0.00 0.00 0.00 1.82
3585 4475 7.131565 TGCTATGATACATGCACGTAAAATTG 58.868 34.615 0.00 0.00 0.00 2.32
3586 4476 6.086765 GCTATGATACATGCACGTAAAATTGC 59.913 38.462 0.00 3.16 39.33 3.56
3587 4477 4.667262 TGATACATGCACGTAAAATTGCC 58.333 39.130 0.00 0.00 38.00 4.52
3588 4478 4.156739 TGATACATGCACGTAAAATTGCCA 59.843 37.500 0.00 0.00 38.00 4.92
3589 4479 3.591196 ACATGCACGTAAAATTGCCAT 57.409 38.095 0.00 0.00 38.00 4.40
3590 4480 3.252400 ACATGCACGTAAAATTGCCATG 58.748 40.909 0.00 0.00 38.00 3.66
3591 4481 2.360553 TGCACGTAAAATTGCCATGG 57.639 45.000 7.63 7.63 38.00 3.66
3592 4482 1.615883 TGCACGTAAAATTGCCATGGT 59.384 42.857 14.67 0.00 38.00 3.55
3593 4483 2.036475 TGCACGTAAAATTGCCATGGTT 59.964 40.909 14.67 1.29 38.00 3.67
3594 4484 3.063485 GCACGTAAAATTGCCATGGTTT 58.937 40.909 14.67 8.41 32.21 3.27
3595 4485 4.238514 GCACGTAAAATTGCCATGGTTTA 58.761 39.130 14.67 7.37 32.21 2.01
3596 4486 4.867608 GCACGTAAAATTGCCATGGTTTAT 59.132 37.500 14.67 1.49 32.21 1.40
3597 4487 6.037098 GCACGTAAAATTGCCATGGTTTATA 58.963 36.000 14.67 0.00 32.21 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.044060 TGAGCAGTTGAAAATTCTAATGGTAG 57.956 34.615 9.05 0.00 38.40 3.18
37 38 6.899393 TGAGCAGTTGAAAATTCTAATGGT 57.101 33.333 8.88 8.88 40.22 3.55
83 85 3.555377 CCAGTGGCATTTTTGAGCATGAA 60.555 43.478 0.00 0.00 0.00 2.57
84 86 2.028839 CCAGTGGCATTTTTGAGCATGA 60.029 45.455 0.00 0.00 0.00 3.07
151 153 8.221251 TGGCATGTTGGTCCATAAGTATTTATA 58.779 33.333 0.00 0.00 0.00 0.98
160 162 2.897271 ACTGGCATGTTGGTCCATAA 57.103 45.000 0.00 0.00 0.00 1.90
179 181 6.673583 TGATTGTAGTGAGATAGAGGGAGAA 58.326 40.000 0.00 0.00 0.00 2.87
214 216 2.631160 ACGTTGTTGGGATCAAGTGA 57.369 45.000 0.00 0.00 32.92 3.41
252 254 3.799420 GTCAGGAGTAAGCAAGCGAATAG 59.201 47.826 0.00 0.00 0.00 1.73
316 318 8.764558 TGACAAAAATAAGCCTAGACCTACATA 58.235 33.333 0.00 0.00 0.00 2.29
397 399 5.920273 CCATCGTTTTGTTAGATGTTTGCTT 59.080 36.000 4.33 0.00 39.89 3.91
436 438 5.537300 TGTTTGCTAAAAGGTGCCATAAA 57.463 34.783 0.00 0.00 0.00 1.40
438 440 5.016173 AGATGTTTGCTAAAAGGTGCCATA 58.984 37.500 0.00 0.00 0.00 2.74
445 447 3.751175 TCCGTGAGATGTTTGCTAAAAGG 59.249 43.478 0.00 0.00 0.00 3.11
446 448 5.551760 ATCCGTGAGATGTTTGCTAAAAG 57.448 39.130 0.00 0.00 32.41 2.27
450 452 2.425668 TCGATCCGTGAGATGTTTGCTA 59.574 45.455 0.00 0.00 34.42 3.49
560 562 4.082679 AGTCATGTCTCTACACCGAGTTTC 60.083 45.833 0.00 0.00 38.78 2.78
578 580 6.788598 TCTAGAGATTGAAAGAGCAGTCAT 57.211 37.500 0.00 0.00 0.00 3.06
589 593 9.813826 AAAAAGGAGGAATTTCTAGAGATTGAA 57.186 29.630 12.93 0.00 0.00 2.69
653 659 6.128007 CCGGTTTGCAACTGAAAAGATACTAT 60.128 38.462 0.00 0.00 40.26 2.12
854 860 4.369182 CCTCACAGCCCGTATTTAAGTAG 58.631 47.826 0.00 0.00 0.00 2.57
982 989 0.397254 ATGAGGAGGTCGGGTAGTGG 60.397 60.000 0.00 0.00 0.00 4.00
984 991 1.288335 AGAATGAGGAGGTCGGGTAGT 59.712 52.381 0.00 0.00 0.00 2.73
986 993 2.752154 GCTAGAATGAGGAGGTCGGGTA 60.752 54.545 0.00 0.00 0.00 3.69
1137 1144 6.584471 ATCAAGAGTAGGGAGTAGAGAGAA 57.416 41.667 0.00 0.00 0.00 2.87
1189 1196 1.335142 CGCCTCTTGCTACCGATCTAC 60.335 57.143 0.00 0.00 38.05 2.59
1223 1231 2.962253 GCGCCACGGATCTACAGC 60.962 66.667 0.00 0.00 0.00 4.40
1271 1279 1.218875 TGCGCATCGAAAACACGAGT 61.219 50.000 5.66 0.00 45.22 4.18
1280 1288 0.369931 CGTGAATCTTGCGCATCGAA 59.630 50.000 12.75 0.00 0.00 3.71
1281 1289 1.998285 CGTGAATCTTGCGCATCGA 59.002 52.632 12.75 12.04 0.00 3.59
1305 1313 4.566360 GCATAAAACCATCAAACAATCCCG 59.434 41.667 0.00 0.00 0.00 5.14
1306 1314 4.875536 GGCATAAAACCATCAAACAATCCC 59.124 41.667 0.00 0.00 0.00 3.85
1335 1343 3.834231 AGAAAAGATCCAAACCACCATGG 59.166 43.478 11.19 11.19 45.02 3.66
1337 1345 4.262592 GCAAGAAAAGATCCAAACCACCAT 60.263 41.667 0.00 0.00 0.00 3.55
1502 1514 1.917273 CCAGCCATCAAATTCAAGCG 58.083 50.000 0.00 0.00 0.00 4.68
1505 1517 1.473677 CTCGCCAGCCATCAAATTCAA 59.526 47.619 0.00 0.00 0.00 2.69
1566 1578 4.808895 CCTTGCAGACAAAGCATATACGTA 59.191 41.667 0.00 0.00 42.33 3.57
1567 1579 3.623060 CCTTGCAGACAAAGCATATACGT 59.377 43.478 0.00 0.00 42.33 3.57
1568 1580 3.546815 GCCTTGCAGACAAAGCATATACG 60.547 47.826 0.00 0.00 41.89 3.06
1569 1581 3.243201 GGCCTTGCAGACAAAGCATATAC 60.243 47.826 0.00 0.00 43.71 1.47
1629 1641 4.525024 ACTCACGCTACCAGATAGTAGTT 58.475 43.478 1.11 0.00 41.54 2.24
1635 1647 4.460034 TGTAACAACTCACGCTACCAGATA 59.540 41.667 0.00 0.00 0.00 1.98
1702 1714 2.301870 AGAGGGCGACACACAAATCTAA 59.698 45.455 0.00 0.00 0.00 2.10
1708 1720 0.531974 GTCAAGAGGGCGACACACAA 60.532 55.000 0.00 0.00 32.24 3.33
1723 1735 1.211703 TGACCAGGTTTGCTCTGTCAA 59.788 47.619 0.00 0.00 0.00 3.18
1725 1737 1.876156 CTTGACCAGGTTTGCTCTGTC 59.124 52.381 0.00 0.00 0.00 3.51
1732 1748 4.464069 TTGGAAAACTTGACCAGGTTTG 57.536 40.909 10.33 0.00 42.99 2.93
1750 1788 4.818546 GGTAGAACATGAGGTGATGATTGG 59.181 45.833 0.00 0.00 0.00 3.16
1885 1933 8.198109 GCAACAGACTTAGACTTATATTGGAGA 58.802 37.037 0.00 0.00 0.00 3.71
1887 1935 7.847096 TGCAACAGACTTAGACTTATATTGGA 58.153 34.615 0.00 0.00 0.00 3.53
1901 1949 2.158769 TGTGGACAGATGCAACAGACTT 60.159 45.455 0.00 0.00 0.00 3.01
1903 1951 1.802960 CTGTGGACAGATGCAACAGAC 59.197 52.381 6.60 0.00 46.59 3.51
1947 1997 9.268268 CCGGTATGCTTGAAAATACTTAATCTA 57.732 33.333 0.00 0.00 31.28 1.98
1948 1998 7.773690 ACCGGTATGCTTGAAAATACTTAATCT 59.226 33.333 4.49 0.00 31.28 2.40
1949 1999 7.927048 ACCGGTATGCTTGAAAATACTTAATC 58.073 34.615 4.49 0.00 31.28 1.75
1951 2001 6.316890 GGACCGGTATGCTTGAAAATACTTAA 59.683 38.462 7.34 0.00 31.28 1.85
1952 2002 5.818857 GGACCGGTATGCTTGAAAATACTTA 59.181 40.000 7.34 0.00 31.28 2.24
1962 2016 2.364632 TGAAATGGACCGGTATGCTTG 58.635 47.619 7.34 0.00 0.00 4.01
1963 2017 2.799126 TGAAATGGACCGGTATGCTT 57.201 45.000 7.34 0.00 0.00 3.91
2040 2096 8.065407 TCATAAAAGTACAAGTTGTTACGCAAG 58.935 33.333 14.90 0.00 37.83 4.01
2043 2099 8.944212 AATCATAAAAGTACAAGTTGTTACGC 57.056 30.769 14.90 2.92 0.00 4.42
2222 2306 8.925161 TGCAAAATAGAAGGCATACAATAAAC 57.075 30.769 0.00 0.00 0.00 2.01
2266 2351 5.766670 ACAAGAGTGCAAATTCAGAGATTGA 59.233 36.000 0.00 0.00 0.00 2.57
2268 2353 6.645790 AACAAGAGTGCAAATTCAGAGATT 57.354 33.333 0.00 0.00 0.00 2.40
2596 3439 4.576463 CCAGGCAAGAATAGGTATGAACAC 59.424 45.833 0.00 0.00 0.00 3.32
2597 3440 4.780815 CCAGGCAAGAATAGGTATGAACA 58.219 43.478 0.00 0.00 0.00 3.18
2598 3441 3.565902 GCCAGGCAAGAATAGGTATGAAC 59.434 47.826 6.55 0.00 0.00 3.18
2607 3450 0.613260 ACAGACGCCAGGCAAGAATA 59.387 50.000 13.30 0.00 0.00 1.75
2621 3464 5.576384 CAGCAGAGACTGATTAAGAACAGAC 59.424 44.000 12.02 7.43 40.25 3.51
2709 3553 0.609131 TAAGCAAAGTCAGGGCAGCC 60.609 55.000 1.26 1.26 0.00 4.85
2740 3584 8.950210 AGATGACCATTTAACAATTACAGACAG 58.050 33.333 0.00 0.00 0.00 3.51
2838 3682 7.074653 TCTAGGTTTTTAGATGTGACCAACT 57.925 36.000 0.00 0.00 32.81 3.16
2850 3694 7.745620 ACAACAGTGGATTCTAGGTTTTTAG 57.254 36.000 0.00 0.00 0.00 1.85
2868 3714 5.337773 CGCGCATCAAATTCATATACAACAG 59.662 40.000 8.75 0.00 0.00 3.16
2869 3715 5.007136 TCGCGCATCAAATTCATATACAACA 59.993 36.000 8.75 0.00 0.00 3.33
2870 3716 5.336990 GTCGCGCATCAAATTCATATACAAC 59.663 40.000 8.75 0.00 0.00 3.32
2929 3779 4.202090 GGTATCCGACGAGTTCTAACCATT 60.202 45.833 0.00 0.00 0.00 3.16
2949 3799 3.070302 GGGTGGCAAAGAAATTGTTGGTA 59.930 43.478 0.00 0.00 41.32 3.25
2950 3800 2.158827 GGGTGGCAAAGAAATTGTTGGT 60.159 45.455 0.00 0.00 41.32 3.67
2980 3830 2.364970 TGCTCCAGGTTTTCCACAATTG 59.635 45.455 3.24 3.24 43.73 2.32
2984 3834 1.547675 GGATGCTCCAGGTTTTCCACA 60.548 52.381 0.00 0.00 43.73 4.17
3018 3870 2.548067 GGATACAGGTATCGTTGGCTGG 60.548 54.545 12.03 0.00 42.10 4.85
3048 3938 5.162794 TGACAATGTGATGCATGCTTAAAC 58.837 37.500 20.33 14.31 37.96 2.01
3052 3942 3.945981 TTGACAATGTGATGCATGCTT 57.054 38.095 20.33 13.23 37.96 3.91
3059 3949 5.786311 ACCCTCAATTTTGACAATGTGATG 58.214 37.500 0.00 0.00 32.90 3.07
3080 3970 1.486726 CACACCTAATCCCTGGAGACC 59.513 57.143 0.00 0.00 0.00 3.85
3113 4003 6.531594 TGAATGTTCACGCACAAATACAAAAA 59.468 30.769 0.00 0.00 31.01 1.94
3135 4025 7.812191 CGACCCAAAAATAATTTCACTGATGAA 59.188 33.333 0.00 0.00 43.28 2.57
3136 4026 7.312154 CGACCCAAAAATAATTTCACTGATGA 58.688 34.615 0.00 0.00 0.00 2.92
3140 4030 5.118510 GTGCGACCCAAAAATAATTTCACTG 59.881 40.000 0.00 0.00 0.00 3.66
3145 4035 6.866248 CAGTTAGTGCGACCCAAAAATAATTT 59.134 34.615 0.00 0.00 0.00 1.82
3153 4043 2.624169 GCAGTTAGTGCGACCCAAA 58.376 52.632 0.00 0.00 43.99 3.28
3154 4044 4.371975 GCAGTTAGTGCGACCCAA 57.628 55.556 0.00 0.00 43.99 4.12
3162 4052 0.581529 CACACGTGTGGCAGTTAGTG 59.418 55.000 35.65 10.67 42.10 2.74
3163 4053 2.986311 CACACGTGTGGCAGTTAGT 58.014 52.632 35.65 1.12 42.10 2.24
3172 4062 2.666190 CTCCCTGCCACACGTGTG 60.666 66.667 36.13 36.13 45.23 3.82
3173 4063 2.842462 TCTCCCTGCCACACGTGT 60.842 61.111 17.22 17.22 0.00 4.49
3174 4064 2.357517 GTCTCCCTGCCACACGTG 60.358 66.667 15.48 15.48 0.00 4.49
3175 4065 3.991051 CGTCTCCCTGCCACACGT 61.991 66.667 0.00 0.00 0.00 4.49
3177 4067 3.612247 ATGCGTCTCCCTGCCACAC 62.612 63.158 0.00 0.00 0.00 3.82
3178 4068 3.315142 GATGCGTCTCCCTGCCACA 62.315 63.158 0.00 0.00 0.00 4.17
3179 4069 2.512515 GATGCGTCTCCCTGCCAC 60.513 66.667 0.00 0.00 0.00 5.01
3180 4070 1.048160 TATGATGCGTCTCCCTGCCA 61.048 55.000 7.58 0.00 0.00 4.92
3181 4071 0.601311 GTATGATGCGTCTCCCTGCC 60.601 60.000 7.58 0.00 0.00 4.85
3182 4072 0.941463 CGTATGATGCGTCTCCCTGC 60.941 60.000 7.58 0.00 0.00 4.85
3183 4073 0.385751 ACGTATGATGCGTCTCCCTG 59.614 55.000 1.93 0.00 38.23 4.45
3184 4074 1.112113 AACGTATGATGCGTCTCCCT 58.888 50.000 9.35 0.00 42.10 4.20
3185 4075 1.859080 GAAACGTATGATGCGTCTCCC 59.141 52.381 9.35 0.00 42.10 4.30
3186 4076 2.810650 AGAAACGTATGATGCGTCTCC 58.189 47.619 9.35 1.96 42.10 3.71
3187 4077 5.459107 ACATTAGAAACGTATGATGCGTCTC 59.541 40.000 9.35 5.03 42.10 3.36
3188 4078 5.348986 ACATTAGAAACGTATGATGCGTCT 58.651 37.500 9.35 5.81 42.10 4.18
3189 4079 5.637104 ACATTAGAAACGTATGATGCGTC 57.363 39.130 9.35 0.00 42.10 5.19
3190 4080 7.063662 TGTTTACATTAGAAACGTATGATGCGT 59.936 33.333 1.93 1.93 45.07 5.24
3191 4081 7.395645 TGTTTACATTAGAAACGTATGATGCG 58.604 34.615 0.33 0.33 39.23 4.73
3192 4082 8.600625 TCTGTTTACATTAGAAACGTATGATGC 58.399 33.333 2.36 0.00 39.23 3.91
3196 4086 9.210426 GCAATCTGTTTACATTAGAAACGTATG 57.790 33.333 0.00 0.00 39.23 2.39
3197 4087 8.395633 GGCAATCTGTTTACATTAGAAACGTAT 58.604 33.333 0.00 0.00 39.23 3.06
3198 4088 7.388224 TGGCAATCTGTTTACATTAGAAACGTA 59.612 33.333 0.00 0.00 39.23 3.57
3199 4089 6.205853 TGGCAATCTGTTTACATTAGAAACGT 59.794 34.615 0.00 0.00 39.23 3.99
3200 4090 6.523201 GTGGCAATCTGTTTACATTAGAAACG 59.477 38.462 0.00 0.00 39.23 3.60
3201 4091 6.523201 CGTGGCAATCTGTTTACATTAGAAAC 59.477 38.462 0.00 0.00 37.32 2.78
3202 4092 6.205853 ACGTGGCAATCTGTTTACATTAGAAA 59.794 34.615 0.00 0.00 0.00 2.52
3203 4093 5.703592 ACGTGGCAATCTGTTTACATTAGAA 59.296 36.000 0.00 0.00 0.00 2.10
3204 4094 5.242434 ACGTGGCAATCTGTTTACATTAGA 58.758 37.500 0.00 0.00 0.00 2.10
3205 4095 5.121611 TGACGTGGCAATCTGTTTACATTAG 59.878 40.000 0.00 0.00 0.00 1.73
3206 4096 4.998033 TGACGTGGCAATCTGTTTACATTA 59.002 37.500 0.00 0.00 0.00 1.90
3207 4097 3.818210 TGACGTGGCAATCTGTTTACATT 59.182 39.130 0.00 0.00 0.00 2.71
3208 4098 3.407698 TGACGTGGCAATCTGTTTACAT 58.592 40.909 0.00 0.00 0.00 2.29
3209 4099 2.839975 TGACGTGGCAATCTGTTTACA 58.160 42.857 0.00 0.00 0.00 2.41
3210 4100 3.483574 CGATGACGTGGCAATCTGTTTAC 60.484 47.826 0.00 0.00 34.56 2.01
3211 4101 2.670905 CGATGACGTGGCAATCTGTTTA 59.329 45.455 0.00 0.00 34.56 2.01
3212 4102 1.464608 CGATGACGTGGCAATCTGTTT 59.535 47.619 0.00 0.00 34.56 2.83
3213 4103 1.078709 CGATGACGTGGCAATCTGTT 58.921 50.000 0.00 0.00 34.56 3.16
3214 4104 1.361668 GCGATGACGTGGCAATCTGT 61.362 55.000 0.00 0.00 41.98 3.41
3215 4105 1.349627 GCGATGACGTGGCAATCTG 59.650 57.895 0.00 0.00 41.98 2.90
3216 4106 0.462581 ATGCGATGACGTGGCAATCT 60.463 50.000 8.50 0.00 44.94 2.40
3217 4107 0.316442 CATGCGATGACGTGGCAATC 60.316 55.000 8.50 0.00 44.94 2.67
3218 4108 1.723273 CATGCGATGACGTGGCAAT 59.277 52.632 8.50 0.00 44.94 3.56
3219 4109 3.037992 GCATGCGATGACGTGGCAA 62.038 57.895 8.50 0.00 44.94 4.52
3220 4110 3.498834 GCATGCGATGACGTGGCA 61.499 61.111 0.00 6.82 45.88 4.92
3221 4111 2.827051 ATGCATGCGATGACGTGGC 61.827 57.895 14.09 0.00 41.98 5.01
3222 4112 1.010462 CATGCATGCGATGACGTGG 60.010 57.895 14.93 0.00 41.98 4.94
3223 4113 1.010462 CCATGCATGCGATGACGTG 60.010 57.895 21.69 0.10 41.98 4.49
3224 4114 0.533531 ATCCATGCATGCGATGACGT 60.534 50.000 21.69 11.26 41.98 4.34
3225 4115 0.110373 CATCCATGCATGCGATGACG 60.110 55.000 32.80 17.18 37.51 4.35
3226 4116 3.767287 CATCCATGCATGCGATGAC 57.233 52.632 32.80 0.00 37.51 3.06
3295 4185 8.001549 AAAACGGATTTTCAATCGAATTTTTCG 58.998 29.630 3.35 3.35 43.14 3.46
3310 4200 6.876789 GGGATTTAATGGTGAAAACGGATTTT 59.123 34.615 0.00 0.00 40.83 1.82
3311 4201 6.212589 AGGGATTTAATGGTGAAAACGGATTT 59.787 34.615 0.00 0.00 0.00 2.17
3312 4202 5.719563 AGGGATTTAATGGTGAAAACGGATT 59.280 36.000 0.00 0.00 0.00 3.01
3313 4203 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
3314 4204 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
3315 4205 4.438200 CGAGGGATTTAATGGTGAAAACGG 60.438 45.833 0.00 0.00 0.00 4.44
3316 4206 4.658071 CGAGGGATTTAATGGTGAAAACG 58.342 43.478 0.00 0.00 0.00 3.60
3317 4207 4.421058 GCGAGGGATTTAATGGTGAAAAC 58.579 43.478 0.00 0.00 0.00 2.43
3318 4208 3.127895 CGCGAGGGATTTAATGGTGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
3319 4209 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
3320 4210 2.093394 TCGCGAGGGATTTAATGGTGAA 60.093 45.455 3.71 0.00 0.00 3.18
3321 4211 1.483004 TCGCGAGGGATTTAATGGTGA 59.517 47.619 3.71 0.00 0.00 4.02
3322 4212 1.597663 GTCGCGAGGGATTTAATGGTG 59.402 52.381 10.24 0.00 0.00 4.17
3323 4213 1.805120 CGTCGCGAGGGATTTAATGGT 60.805 52.381 20.58 0.00 0.00 3.55
3324 4214 0.859232 CGTCGCGAGGGATTTAATGG 59.141 55.000 20.58 0.00 0.00 3.16
3325 4215 1.847818 TCGTCGCGAGGGATTTAATG 58.152 50.000 26.64 0.13 0.00 1.90
3343 4233 6.763610 ACATGGGATCTAGTTTCGAAAATCTC 59.236 38.462 14.90 12.93 0.00 2.75
3344 4234 6.653989 ACATGGGATCTAGTTTCGAAAATCT 58.346 36.000 14.90 10.01 0.00 2.40
3345 4235 6.927294 ACATGGGATCTAGTTTCGAAAATC 57.073 37.500 14.90 12.30 0.00 2.17
3346 4236 6.884295 TCAACATGGGATCTAGTTTCGAAAAT 59.116 34.615 15.79 15.79 0.00 1.82
3347 4237 6.234920 TCAACATGGGATCTAGTTTCGAAAA 58.765 36.000 13.10 0.00 0.00 2.29
3348 4238 5.800296 TCAACATGGGATCTAGTTTCGAAA 58.200 37.500 6.47 6.47 0.00 3.46
3349 4239 5.414789 TCAACATGGGATCTAGTTTCGAA 57.585 39.130 0.00 0.00 0.00 3.71
3350 4240 5.614324 ATCAACATGGGATCTAGTTTCGA 57.386 39.130 0.00 0.00 0.00 3.71
3351 4241 6.931281 ACATATCAACATGGGATCTAGTTTCG 59.069 38.462 5.52 0.00 0.00 3.46
3352 4242 8.682936 AACATATCAACATGGGATCTAGTTTC 57.317 34.615 5.52 0.00 0.00 2.78
3353 4243 9.479549 AAAACATATCAACATGGGATCTAGTTT 57.520 29.630 5.52 11.05 30.93 2.66
3354 4244 8.906867 CAAAACATATCAACATGGGATCTAGTT 58.093 33.333 5.52 6.83 0.00 2.24
3355 4245 8.274322 TCAAAACATATCAACATGGGATCTAGT 58.726 33.333 5.52 1.99 0.00 2.57
3356 4246 8.681486 TCAAAACATATCAACATGGGATCTAG 57.319 34.615 5.52 0.00 0.00 2.43
3357 4247 9.070179 CATCAAAACATATCAACATGGGATCTA 57.930 33.333 5.52 0.00 0.00 1.98
3358 4248 7.781219 TCATCAAAACATATCAACATGGGATCT 59.219 33.333 5.52 0.00 0.00 2.75
3359 4249 7.944061 TCATCAAAACATATCAACATGGGATC 58.056 34.615 5.52 0.00 0.00 3.36
3360 4250 7.901283 TCATCAAAACATATCAACATGGGAT 57.099 32.000 0.00 2.37 0.00 3.85
3361 4251 7.715266 TTCATCAAAACATATCAACATGGGA 57.285 32.000 0.00 0.00 0.00 4.37
3362 4252 8.951787 AATTCATCAAAACATATCAACATGGG 57.048 30.769 0.00 0.00 0.00 4.00
3391 4281 7.278875 AGACATGGCAACTTTTAATCCAAAAA 58.721 30.769 0.00 0.00 35.71 1.94
3392 4282 6.825610 AGACATGGCAACTTTTAATCCAAAA 58.174 32.000 0.00 0.00 34.89 2.44
3393 4283 6.418057 AGACATGGCAACTTTTAATCCAAA 57.582 33.333 0.00 0.00 37.61 3.28
3394 4284 7.716799 ATAGACATGGCAACTTTTAATCCAA 57.283 32.000 0.00 0.00 37.61 3.53
3395 4285 7.546358 CAATAGACATGGCAACTTTTAATCCA 58.454 34.615 0.00 0.00 37.61 3.41
3396 4286 6.476706 GCAATAGACATGGCAACTTTTAATCC 59.523 38.462 0.00 0.00 30.66 3.01
3397 4287 7.035004 TGCAATAGACATGGCAACTTTTAATC 58.965 34.615 0.00 0.00 38.19 1.75
3398 4288 6.934056 TGCAATAGACATGGCAACTTTTAAT 58.066 32.000 0.00 0.00 38.19 1.40
3399 4289 6.338214 TGCAATAGACATGGCAACTTTTAA 57.662 33.333 0.00 0.00 38.19 1.52
3400 4290 5.973899 TGCAATAGACATGGCAACTTTTA 57.026 34.783 0.00 0.00 38.19 1.52
3401 4291 4.870123 TGCAATAGACATGGCAACTTTT 57.130 36.364 0.00 0.00 38.19 2.27
3402 4292 6.321945 TCATATGCAATAGACATGGCAACTTT 59.678 34.615 0.00 0.00 44.38 2.66
3403 4293 5.829391 TCATATGCAATAGACATGGCAACTT 59.171 36.000 0.00 0.00 44.38 2.66
3404 4294 5.379187 TCATATGCAATAGACATGGCAACT 58.621 37.500 0.00 0.00 44.38 3.16
3405 4295 5.694231 TCATATGCAATAGACATGGCAAC 57.306 39.130 0.00 0.00 44.38 4.17
3406 4296 6.904463 ATTCATATGCAATAGACATGGCAA 57.096 33.333 0.00 0.00 44.38 4.52
3407 4297 6.683715 CAATTCATATGCAATAGACATGGCA 58.316 36.000 0.00 0.00 45.29 4.92
3408 4298 5.575606 GCAATTCATATGCAATAGACATGGC 59.424 40.000 0.00 0.00 43.29 4.40
3409 4299 6.097356 GGCAATTCATATGCAATAGACATGG 58.903 40.000 0.00 0.00 45.60 3.66
3410 4300 6.683715 TGGCAATTCATATGCAATAGACATG 58.316 36.000 0.00 0.00 45.60 3.21
3411 4301 6.904463 TGGCAATTCATATGCAATAGACAT 57.096 33.333 0.00 0.00 45.60 3.06
3412 4302 6.490721 TCATGGCAATTCATATGCAATAGACA 59.509 34.615 0.00 0.00 45.60 3.41
3413 4303 6.916440 TCATGGCAATTCATATGCAATAGAC 58.084 36.000 0.00 0.00 45.60 2.59
3414 4304 7.177744 ACATCATGGCAATTCATATGCAATAGA 59.822 33.333 0.00 0.00 45.60 1.98
3415 4305 7.320399 ACATCATGGCAATTCATATGCAATAG 58.680 34.615 0.00 0.00 45.60 1.73
3416 4306 7.234661 ACATCATGGCAATTCATATGCAATA 57.765 32.000 0.00 0.00 45.60 1.90
3417 4307 6.109156 ACATCATGGCAATTCATATGCAAT 57.891 33.333 0.00 0.00 45.60 3.56
3418 4308 5.538849 ACATCATGGCAATTCATATGCAA 57.461 34.783 0.00 0.00 45.60 4.08
3419 4309 5.538849 AACATCATGGCAATTCATATGCA 57.461 34.783 0.00 0.00 45.60 3.96
3420 4310 6.924612 TGTAAACATCATGGCAATTCATATGC 59.075 34.615 0.00 0.00 43.08 3.14
3421 4311 8.139350 AGTGTAAACATCATGGCAATTCATATG 58.861 33.333 0.00 0.00 0.00 1.78
3422 4312 8.139350 CAGTGTAAACATCATGGCAATTCATAT 58.861 33.333 0.00 0.00 0.00 1.78
3423 4313 7.338957 TCAGTGTAAACATCATGGCAATTCATA 59.661 33.333 0.00 0.00 0.00 2.15
3424 4314 6.153170 TCAGTGTAAACATCATGGCAATTCAT 59.847 34.615 0.00 0.00 0.00 2.57
3425 4315 5.476254 TCAGTGTAAACATCATGGCAATTCA 59.524 36.000 0.00 0.00 0.00 2.57
3426 4316 5.953183 TCAGTGTAAACATCATGGCAATTC 58.047 37.500 0.00 0.00 0.00 2.17
3427 4317 5.981088 TCAGTGTAAACATCATGGCAATT 57.019 34.783 0.00 0.00 0.00 2.32
3428 4318 5.477984 ACTTCAGTGTAAACATCATGGCAAT 59.522 36.000 0.00 0.00 0.00 3.56
3429 4319 4.826733 ACTTCAGTGTAAACATCATGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
3430 4320 4.397420 ACTTCAGTGTAAACATCATGGCA 58.603 39.130 0.00 0.00 0.00 4.92
3431 4321 5.156355 CAACTTCAGTGTAAACATCATGGC 58.844 41.667 0.00 0.00 0.00 4.40
3432 4322 5.156355 GCAACTTCAGTGTAAACATCATGG 58.844 41.667 0.00 0.00 0.00 3.66
3433 4323 5.156355 GGCAACTTCAGTGTAAACATCATG 58.844 41.667 0.00 0.00 0.00 3.07
3434 4324 4.826733 TGGCAACTTCAGTGTAAACATCAT 59.173 37.500 0.00 0.00 37.61 2.45
3435 4325 4.203226 TGGCAACTTCAGTGTAAACATCA 58.797 39.130 0.00 0.00 37.61 3.07
3436 4326 4.829064 TGGCAACTTCAGTGTAAACATC 57.171 40.909 0.00 0.00 37.61 3.06
3437 4327 4.826733 TCATGGCAACTTCAGTGTAAACAT 59.173 37.500 0.00 0.00 37.61 2.71
3438 4328 4.203226 TCATGGCAACTTCAGTGTAAACA 58.797 39.130 0.00 0.00 37.61 2.83
3439 4329 4.829064 TCATGGCAACTTCAGTGTAAAC 57.171 40.909 0.00 0.00 37.61 2.01
3440 4330 6.658816 ACATATCATGGCAACTTCAGTGTAAA 59.341 34.615 0.00 0.00 37.61 2.01
3441 4331 6.179756 ACATATCATGGCAACTTCAGTGTAA 58.820 36.000 0.00 0.00 37.61 2.41
3442 4332 5.744171 ACATATCATGGCAACTTCAGTGTA 58.256 37.500 0.00 0.00 37.61 2.90
3443 4333 4.592942 ACATATCATGGCAACTTCAGTGT 58.407 39.130 0.00 0.00 37.61 3.55
3444 4334 5.571784 AACATATCATGGCAACTTCAGTG 57.428 39.130 0.00 0.00 37.61 3.66
3445 4335 5.711506 TGAAACATATCATGGCAACTTCAGT 59.288 36.000 0.00 0.00 37.61 3.41
3446 4336 6.198650 TGAAACATATCATGGCAACTTCAG 57.801 37.500 0.00 0.00 37.61 3.02
3447 4337 5.393352 GCTGAAACATATCATGGCAACTTCA 60.393 40.000 0.00 0.00 37.61 3.02
3448 4338 5.039333 GCTGAAACATATCATGGCAACTTC 58.961 41.667 0.00 0.00 37.61 3.01
3449 4339 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
3450 4340 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
3451 4341 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
3452 4342 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
3453 4343 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
3454 4344 7.655490 AGAAAATAGCTGAAACATATCATGGC 58.345 34.615 0.00 0.00 33.60 4.40
3455 4345 9.674824 GAAGAAAATAGCTGAAACATATCATGG 57.325 33.333 0.00 0.00 33.60 3.66
3495 4385 9.780186 TTCCCCGTTTTATAAATGTCAAAATTT 57.220 25.926 0.00 0.00 34.24 1.82
3496 4386 9.952030 ATTCCCCGTTTTATAAATGTCAAAATT 57.048 25.926 0.00 0.00 0.00 1.82
3497 4387 9.952030 AATTCCCCGTTTTATAAATGTCAAAAT 57.048 25.926 0.00 0.00 0.00 1.82
3501 4391 9.463902 TCTTAATTCCCCGTTTTATAAATGTCA 57.536 29.630 0.00 0.00 0.00 3.58
3509 4399 9.170734 GTCTAGTTTCTTAATTCCCCGTTTTAT 57.829 33.333 0.00 0.00 0.00 1.40
3510 4400 8.377799 AGTCTAGTTTCTTAATTCCCCGTTTTA 58.622 33.333 0.00 0.00 0.00 1.52
3511 4401 7.229308 AGTCTAGTTTCTTAATTCCCCGTTTT 58.771 34.615 0.00 0.00 0.00 2.43
3512 4402 6.776744 AGTCTAGTTTCTTAATTCCCCGTTT 58.223 36.000 0.00 0.00 0.00 3.60
3513 4403 6.370186 AGTCTAGTTTCTTAATTCCCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
3514 4404 6.171213 CAAGTCTAGTTTCTTAATTCCCCGT 58.829 40.000 0.00 0.00 0.00 5.28
3515 4405 5.064834 GCAAGTCTAGTTTCTTAATTCCCCG 59.935 44.000 0.00 0.00 0.00 5.73
3516 4406 5.064834 CGCAAGTCTAGTTTCTTAATTCCCC 59.935 44.000 0.00 0.00 0.00 4.81
3517 4407 5.873164 TCGCAAGTCTAGTTTCTTAATTCCC 59.127 40.000 0.00 0.00 39.48 3.97
3518 4408 6.963049 TCGCAAGTCTAGTTTCTTAATTCC 57.037 37.500 0.00 0.00 39.48 3.01
3521 4411 8.880750 GGTTAATCGCAAGTCTAGTTTCTTAAT 58.119 33.333 0.00 0.00 39.48 1.40
3522 4412 7.874016 TGGTTAATCGCAAGTCTAGTTTCTTAA 59.126 33.333 0.00 0.00 39.48 1.85
3523 4413 7.380536 TGGTTAATCGCAAGTCTAGTTTCTTA 58.619 34.615 0.00 0.00 39.48 2.10
3524 4414 6.228258 TGGTTAATCGCAAGTCTAGTTTCTT 58.772 36.000 0.00 0.00 39.48 2.52
3525 4415 5.790593 TGGTTAATCGCAAGTCTAGTTTCT 58.209 37.500 0.00 0.00 39.48 2.52
3526 4416 6.663944 ATGGTTAATCGCAAGTCTAGTTTC 57.336 37.500 0.00 0.00 39.48 2.78
3527 4417 8.448615 GTTTATGGTTAATCGCAAGTCTAGTTT 58.551 33.333 0.00 0.00 39.48 2.66
3528 4418 7.822822 AGTTTATGGTTAATCGCAAGTCTAGTT 59.177 33.333 0.00 0.00 39.48 2.24
3529 4419 7.328737 AGTTTATGGTTAATCGCAAGTCTAGT 58.671 34.615 0.00 0.00 39.48 2.57
3530 4420 7.772332 AGTTTATGGTTAATCGCAAGTCTAG 57.228 36.000 0.00 0.00 39.48 2.43
3531 4421 9.656040 TTTAGTTTATGGTTAATCGCAAGTCTA 57.344 29.630 0.00 0.00 39.48 2.59
3532 4422 8.556213 TTTAGTTTATGGTTAATCGCAAGTCT 57.444 30.769 0.00 0.00 39.48 3.24
3533 4423 9.783256 ATTTTAGTTTATGGTTAATCGCAAGTC 57.217 29.630 0.00 0.00 39.48 3.01
3536 4426 8.865001 GCAATTTTAGTTTATGGTTAATCGCAA 58.135 29.630 0.00 0.00 0.00 4.85
3537 4427 8.247562 AGCAATTTTAGTTTATGGTTAATCGCA 58.752 29.630 0.00 0.00 0.00 5.10
3538 4428 8.628882 AGCAATTTTAGTTTATGGTTAATCGC 57.371 30.769 0.00 0.00 0.00 4.58
3550 4440 9.520204 GTGCATGTATCATAGCAATTTTAGTTT 57.480 29.630 0.00 0.00 38.91 2.66
3551 4441 7.857389 CGTGCATGTATCATAGCAATTTTAGTT 59.143 33.333 0.00 0.00 38.91 2.24
3552 4442 7.012327 ACGTGCATGTATCATAGCAATTTTAGT 59.988 33.333 10.57 0.00 38.91 2.24
3553 4443 7.355017 ACGTGCATGTATCATAGCAATTTTAG 58.645 34.615 10.57 0.00 38.91 1.85
3554 4444 7.258022 ACGTGCATGTATCATAGCAATTTTA 57.742 32.000 10.57 0.00 38.91 1.52
3555 4445 6.135290 ACGTGCATGTATCATAGCAATTTT 57.865 33.333 10.57 0.00 38.91 1.82
3556 4446 5.756195 ACGTGCATGTATCATAGCAATTT 57.244 34.783 10.57 0.00 38.91 1.82
3557 4447 6.859420 TTACGTGCATGTATCATAGCAATT 57.141 33.333 19.17 0.00 38.91 2.32
3558 4448 6.859420 TTTACGTGCATGTATCATAGCAAT 57.141 33.333 19.17 0.00 38.91 3.56
3559 4449 6.670077 TTTTACGTGCATGTATCATAGCAA 57.330 33.333 19.17 6.34 38.91 3.91
3560 4450 6.859420 ATTTTACGTGCATGTATCATAGCA 57.141 33.333 19.17 0.00 34.10 3.49
3561 4451 6.086765 GCAATTTTACGTGCATGTATCATAGC 59.913 38.462 19.17 15.93 40.58 2.97
3562 4452 6.578545 GGCAATTTTACGTGCATGTATCATAG 59.421 38.462 19.17 10.80 42.74 2.23
3563 4453 6.038714 TGGCAATTTTACGTGCATGTATCATA 59.961 34.615 19.17 1.83 42.74 2.15
3564 4454 5.163571 TGGCAATTTTACGTGCATGTATCAT 60.164 36.000 19.17 11.30 42.74 2.45
3565 4455 4.156739 TGGCAATTTTACGTGCATGTATCA 59.843 37.500 19.17 9.53 42.74 2.15
3566 4456 4.667262 TGGCAATTTTACGTGCATGTATC 58.333 39.130 19.17 5.34 42.74 2.24
3567 4457 4.710423 TGGCAATTTTACGTGCATGTAT 57.290 36.364 19.17 3.26 42.74 2.29
3568 4458 4.419280 CATGGCAATTTTACGTGCATGTA 58.581 39.130 14.85 14.85 42.74 2.29
3569 4459 3.252400 CATGGCAATTTTACGTGCATGT 58.748 40.909 17.19 17.19 42.74 3.21
3570 4460 2.604011 CCATGGCAATTTTACGTGCATG 59.396 45.455 3.82 3.82 42.74 4.06
3571 4461 2.233431 ACCATGGCAATTTTACGTGCAT 59.767 40.909 13.04 0.00 42.74 3.96
3572 4462 1.615883 ACCATGGCAATTTTACGTGCA 59.384 42.857 13.04 0.00 42.74 4.57
3573 4463 2.362169 ACCATGGCAATTTTACGTGC 57.638 45.000 13.04 0.00 40.14 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.