Multiple sequence alignment - TraesCS5B01G411000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G411000 chr5B 100.000 4564 0 0 1 4564 586461968 586466531 0.000000e+00 8429
1 TraesCS5B01G411000 chr5B 90.350 1513 119 11 994 2479 586530569 586532081 0.000000e+00 1960
2 TraesCS5B01G411000 chr5B 90.720 1444 104 17 3145 4560 586713534 586712093 0.000000e+00 1897
3 TraesCS5B01G411000 chr5B 87.914 1481 161 10 983 2446 586715677 586714198 0.000000e+00 1727
4 TraesCS5B01G411000 chr5B 80.212 1415 177 64 3145 4486 586532103 586533487 0.000000e+00 966
5 TraesCS5B01G411000 chr5B 90.820 512 37 5 2619 3121 586714111 586713601 0.000000e+00 676
6 TraesCS5B01G411000 chr5B 91.241 137 8 3 815 951 586530349 586530481 2.800000e-42 183
7 TraesCS5B01G411000 chr5D 86.225 2461 221 54 980 3383 478703502 478701103 0.000000e+00 2558
8 TraesCS5B01G411000 chr5D 89.202 1880 173 12 975 2833 478742396 478740526 0.000000e+00 2320
9 TraesCS5B01G411000 chr5D 92.540 992 55 9 3145 4119 478740222 478739233 0.000000e+00 1404
10 TraesCS5B01G411000 chr5D 86.478 673 86 5 3379 4049 478701048 478700379 0.000000e+00 734
11 TraesCS5B01G411000 chr5D 93.364 437 27 2 4111 4545 478731130 478730694 0.000000e+00 645
12 TraesCS5B01G411000 chr5D 94.958 238 12 0 2884 3121 478740526 478740289 1.550000e-99 374
13 TraesCS5B01G411000 chr5A 89.470 1510 138 8 994 2482 597748357 597746848 0.000000e+00 1888
14 TraesCS5B01G411000 chr5A 90.361 1442 89 20 3145 4564 597753329 597751916 0.000000e+00 1847
15 TraesCS5B01G411000 chr5A 90.767 1213 87 11 1959 3154 597754552 597753348 0.000000e+00 1596
16 TraesCS5B01G411000 chr5A 87.053 811 83 7 984 1787 597755343 597754548 0.000000e+00 896
17 TraesCS5B01G411000 chr5A 83.258 890 105 24 3145 3994 597746745 597745860 0.000000e+00 778
18 TraesCS5B01G411000 chr5A 93.449 519 28 6 1 517 597719294 597719808 0.000000e+00 765
19 TraesCS5B01G411000 chr5A 91.892 74 2 2 835 908 597748561 597748492 2.910000e-17 100
20 TraesCS5B01G411000 chr6A 78.839 775 137 23 1028 1787 21151161 21150399 8.820000e-137 497
21 TraesCS5B01G411000 chr6D 76.273 746 158 14 1025 1762 20792727 20793461 3.330000e-101 379


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G411000 chr5B 586461968 586466531 4563 False 8429.000000 8429 100.000000 1 4564 1 chr5B.!!$F1 4563
1 TraesCS5B01G411000 chr5B 586712093 586715677 3584 True 1433.333333 1897 89.818000 983 4560 3 chr5B.!!$R1 3577
2 TraesCS5B01G411000 chr5B 586530349 586533487 3138 False 1036.333333 1960 87.267667 815 4486 3 chr5B.!!$F2 3671
3 TraesCS5B01G411000 chr5D 478700379 478703502 3123 True 1646.000000 2558 86.351500 980 4049 2 chr5D.!!$R2 3069
4 TraesCS5B01G411000 chr5D 478739233 478742396 3163 True 1366.000000 2320 92.233333 975 4119 3 chr5D.!!$R3 3144
5 TraesCS5B01G411000 chr5A 597745860 597755343 9483 True 1184.166667 1888 88.800167 835 4564 6 chr5A.!!$R1 3729
6 TraesCS5B01G411000 chr5A 597719294 597719808 514 False 765.000000 765 93.449000 1 517 1 chr5A.!!$F1 516
7 TraesCS5B01G411000 chr6A 21150399 21151161 762 True 497.000000 497 78.839000 1028 1787 1 chr6A.!!$R1 759
8 TraesCS5B01G411000 chr6D 20792727 20793461 734 False 379.000000 379 76.273000 1025 1762 1 chr6D.!!$F1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 613 0.036164 AATGAGGTTACCAGCGTGCA 59.964 50.0 3.51 0.0 0.0 4.57 F
1818 1881 0.037975 TTTACAACGACCTCTCCGCC 60.038 55.0 0.00 0.0 0.0 6.13 F
2723 2827 0.096976 CGTAGGGCAATTTCACGCAG 59.903 55.0 0.00 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 1903 0.033405 AATGGCTGATGGCTCTTGCT 60.033 50.000 0.0 0.0 41.46 3.91 R
3063 3170 0.397941 TTGGCTGGTCTGAGTTGGAG 59.602 55.000 0.0 0.0 0.00 3.86 R
3593 3850 1.795286 CGCCTCTCTAATCATTTCCGC 59.205 52.381 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 177 9.432982 AATAATTTACACACACCCAATATCCAT 57.567 29.630 0.00 0.00 0.00 3.41
233 236 8.642908 AAATAGAAGCAAACACACCTAAAAAC 57.357 30.769 0.00 0.00 0.00 2.43
241 244 6.401688 GCAAACACACCTAAAAACAGGAAAAC 60.402 38.462 0.00 0.00 39.18 2.43
335 338 6.105397 TGAGGTGTAAAGTTACCTTGGTAG 57.895 41.667 0.00 0.00 46.92 3.18
341 344 8.853126 GGTGTAAAGTTACCTTGGTAGAAAAAT 58.147 33.333 0.00 0.00 34.11 1.82
419 422 6.477033 ACACTAATTTTATAGAGCTCGCACTG 59.523 38.462 8.37 0.00 0.00 3.66
425 428 0.820226 TAGAGCTCGCACTGCTTCAT 59.180 50.000 8.37 0.00 41.30 2.57
482 485 8.514136 AATGTTAAACACCAATGTGATTTACG 57.486 30.769 0.00 0.00 45.76 3.18
483 486 7.260558 TGTTAAACACCAATGTGATTTACGA 57.739 32.000 0.00 0.00 45.76 3.43
484 487 7.877003 TGTTAAACACCAATGTGATTTACGAT 58.123 30.769 0.00 0.00 45.76 3.73
485 488 8.018520 TGTTAAACACCAATGTGATTTACGATC 58.981 33.333 0.00 0.00 45.76 3.69
486 489 5.560966 AACACCAATGTGATTTACGATCC 57.439 39.130 0.00 0.00 45.76 3.36
487 490 4.584874 ACACCAATGTGATTTACGATCCA 58.415 39.130 0.00 0.00 45.76 3.41
488 491 5.192927 ACACCAATGTGATTTACGATCCAT 58.807 37.500 0.00 0.00 45.76 3.41
489 492 5.652014 ACACCAATGTGATTTACGATCCATT 59.348 36.000 0.00 0.00 45.76 3.16
490 493 6.183360 ACACCAATGTGATTTACGATCCATTC 60.183 38.462 0.00 0.00 45.76 2.67
491 494 5.885352 ACCAATGTGATTTACGATCCATTCA 59.115 36.000 0.00 0.00 0.00 2.57
492 495 6.183360 ACCAATGTGATTTACGATCCATTCAC 60.183 38.462 0.00 0.00 35.27 3.18
493 496 5.657470 ATGTGATTTACGATCCATTCACG 57.343 39.130 0.00 0.00 37.01 4.35
494 497 3.308595 TGTGATTTACGATCCATTCACGC 59.691 43.478 0.00 0.00 37.01 5.34
495 498 3.555956 GTGATTTACGATCCATTCACGCT 59.444 43.478 0.00 0.00 0.00 5.07
496 499 4.034048 GTGATTTACGATCCATTCACGCTT 59.966 41.667 0.00 0.00 0.00 4.68
497 500 5.233476 GTGATTTACGATCCATTCACGCTTA 59.767 40.000 0.00 0.00 0.00 3.09
498 501 5.989168 TGATTTACGATCCATTCACGCTTAT 59.011 36.000 0.00 0.00 0.00 1.73
499 502 7.115805 GTGATTTACGATCCATTCACGCTTATA 59.884 37.037 0.00 0.00 0.00 0.98
500 503 7.817478 TGATTTACGATCCATTCACGCTTATAT 59.183 33.333 0.00 0.00 0.00 0.86
501 504 9.297586 GATTTACGATCCATTCACGCTTATATA 57.702 33.333 0.00 0.00 0.00 0.86
502 505 9.817809 ATTTACGATCCATTCACGCTTATATAT 57.182 29.630 0.00 0.00 0.00 0.86
503 506 9.647797 TTTACGATCCATTCACGCTTATATATT 57.352 29.630 0.00 0.00 0.00 1.28
504 507 7.525688 ACGATCCATTCACGCTTATATATTG 57.474 36.000 0.00 0.00 0.00 1.90
505 508 7.097192 ACGATCCATTCACGCTTATATATTGT 58.903 34.615 0.00 0.00 0.00 2.71
506 509 8.248253 ACGATCCATTCACGCTTATATATTGTA 58.752 33.333 0.00 0.00 0.00 2.41
507 510 8.532341 CGATCCATTCACGCTTATATATTGTAC 58.468 37.037 0.00 0.00 0.00 2.90
508 511 9.587772 GATCCATTCACGCTTATATATTGTACT 57.412 33.333 0.00 0.00 0.00 2.73
509 512 8.981724 TCCATTCACGCTTATATATTGTACTC 57.018 34.615 0.00 0.00 0.00 2.59
510 513 8.581578 TCCATTCACGCTTATATATTGTACTCA 58.418 33.333 0.00 0.00 0.00 3.41
511 514 9.371136 CCATTCACGCTTATATATTGTACTCAT 57.629 33.333 0.00 0.00 0.00 2.90
550 553 7.864686 TCAACATCATTGATGATTAATCGTCC 58.135 34.615 28.81 14.48 44.70 4.79
551 554 6.808008 ACATCATTGATGATTAATCGTCCC 57.192 37.500 28.81 11.10 44.70 4.46
552 555 6.537355 ACATCATTGATGATTAATCGTCCCT 58.463 36.000 28.81 15.77 44.70 4.20
553 556 6.652481 ACATCATTGATGATTAATCGTCCCTC 59.348 38.462 28.81 10.19 44.70 4.30
554 557 6.173427 TCATTGATGATTAATCGTCCCTCA 57.827 37.500 27.26 12.32 41.12 3.86
555 558 6.591001 TCATTGATGATTAATCGTCCCTCAA 58.409 36.000 27.26 18.62 41.12 3.02
556 559 7.226441 TCATTGATGATTAATCGTCCCTCAAT 58.774 34.615 27.26 19.69 41.12 2.57
557 560 8.374743 TCATTGATGATTAATCGTCCCTCAATA 58.625 33.333 27.26 10.29 41.12 1.90
558 561 9.002600 CATTGATGATTAATCGTCCCTCAATAA 57.997 33.333 27.26 16.76 41.12 1.40
559 562 8.607441 TTGATGATTAATCGTCCCTCAATAAG 57.393 34.615 27.26 0.00 41.12 1.73
560 563 7.735917 TGATGATTAATCGTCCCTCAATAAGT 58.264 34.615 27.26 0.00 41.12 2.24
561 564 8.210946 TGATGATTAATCGTCCCTCAATAAGTT 58.789 33.333 27.26 0.00 41.12 2.66
562 565 9.706691 GATGATTAATCGTCCCTCAATAAGTTA 57.293 33.333 22.22 0.00 36.95 2.24
563 566 8.882415 TGATTAATCGTCCCTCAATAAGTTAC 57.118 34.615 10.80 0.00 0.00 2.50
564 567 8.479689 TGATTAATCGTCCCTCAATAAGTTACA 58.520 33.333 10.80 0.00 0.00 2.41
565 568 8.658499 ATTAATCGTCCCTCAATAAGTTACAC 57.342 34.615 0.00 0.00 0.00 2.90
566 569 4.100707 TCGTCCCTCAATAAGTTACACG 57.899 45.455 0.00 0.00 0.00 4.49
567 570 3.507233 TCGTCCCTCAATAAGTTACACGT 59.493 43.478 0.00 0.00 0.00 4.49
568 571 3.611113 CGTCCCTCAATAAGTTACACGTG 59.389 47.826 15.48 15.48 0.00 4.49
569 572 3.930848 GTCCCTCAATAAGTTACACGTGG 59.069 47.826 21.57 1.66 0.00 4.94
570 573 3.833650 TCCCTCAATAAGTTACACGTGGA 59.166 43.478 21.57 9.00 0.00 4.02
571 574 3.930848 CCCTCAATAAGTTACACGTGGAC 59.069 47.826 21.57 17.40 0.00 4.02
572 575 3.611113 CCTCAATAAGTTACACGTGGACG 59.389 47.826 21.57 5.34 46.33 4.79
582 585 3.636043 CGTGGACGTGCACACACC 61.636 66.667 34.49 18.79 44.40 4.16
583 586 2.512745 GTGGACGTGCACACACCA 60.513 61.111 31.95 18.48 44.40 4.17
584 587 2.512745 TGGACGTGCACACACCAC 60.513 61.111 18.64 0.89 44.40 4.16
585 588 2.512745 GGACGTGCACACACCACA 60.513 61.111 18.64 0.00 44.40 4.17
586 589 2.707039 GACGTGCACACACCACAC 59.293 61.111 18.64 0.00 44.40 3.82
587 590 2.046796 ACGTGCACACACCACACA 60.047 55.556 18.64 0.00 44.40 3.72
588 591 1.436195 GACGTGCACACACCACACAT 61.436 55.000 18.64 0.00 44.40 3.21
589 592 1.009788 CGTGCACACACCACACATG 60.010 57.895 18.64 0.00 44.40 3.21
606 609 2.332063 ATGGAATGAGGTTACCAGCG 57.668 50.000 3.51 0.00 35.84 5.18
607 610 0.981183 TGGAATGAGGTTACCAGCGT 59.019 50.000 3.51 0.00 0.00 5.07
608 611 1.338674 TGGAATGAGGTTACCAGCGTG 60.339 52.381 3.51 0.00 0.00 5.34
609 612 0.727398 GAATGAGGTTACCAGCGTGC 59.273 55.000 3.51 0.00 0.00 5.34
610 613 0.036164 AATGAGGTTACCAGCGTGCA 59.964 50.000 3.51 0.00 0.00 4.57
611 614 0.673644 ATGAGGTTACCAGCGTGCAC 60.674 55.000 6.82 6.82 0.00 4.57
612 615 1.301401 GAGGTTACCAGCGTGCACA 60.301 57.895 18.64 0.00 0.00 4.57
613 616 1.566018 GAGGTTACCAGCGTGCACAC 61.566 60.000 18.64 7.31 0.00 3.82
614 617 2.613506 GGTTACCAGCGTGCACACC 61.614 63.158 18.64 11.05 0.00 4.16
615 618 1.890041 GTTACCAGCGTGCACACCA 60.890 57.895 18.64 0.00 0.00 4.17
616 619 1.153147 TTACCAGCGTGCACACCAA 60.153 52.632 18.64 0.00 0.00 3.67
617 620 1.440938 TTACCAGCGTGCACACCAAC 61.441 55.000 18.64 0.01 0.00 3.77
618 621 2.595009 TACCAGCGTGCACACCAACA 62.595 55.000 18.64 0.00 0.00 3.33
619 622 2.554636 CCAGCGTGCACACCAACAT 61.555 57.895 18.64 0.00 0.00 2.71
620 623 1.233950 CCAGCGTGCACACCAACATA 61.234 55.000 18.64 0.00 0.00 2.29
621 624 0.590682 CAGCGTGCACACCAACATAA 59.409 50.000 18.64 0.00 0.00 1.90
622 625 1.001924 CAGCGTGCACACCAACATAAA 60.002 47.619 18.64 0.00 0.00 1.40
623 626 1.885887 AGCGTGCACACCAACATAAAT 59.114 42.857 18.64 0.00 0.00 1.40
624 627 3.078097 AGCGTGCACACCAACATAAATA 58.922 40.909 18.64 0.00 0.00 1.40
625 628 3.504134 AGCGTGCACACCAACATAAATAA 59.496 39.130 18.64 0.00 0.00 1.40
626 629 4.022762 AGCGTGCACACCAACATAAATAAA 60.023 37.500 18.64 0.00 0.00 1.40
627 630 4.681942 GCGTGCACACCAACATAAATAAAA 59.318 37.500 18.64 0.00 0.00 1.52
628 631 5.347364 GCGTGCACACCAACATAAATAAAAT 59.653 36.000 18.64 0.00 0.00 1.82
629 632 6.528423 GCGTGCACACCAACATAAATAAAATA 59.472 34.615 18.64 0.00 0.00 1.40
630 633 7.062371 GCGTGCACACCAACATAAATAAAATAA 59.938 33.333 18.64 0.00 0.00 1.40
631 634 8.369588 CGTGCACACCAACATAAATAAAATAAC 58.630 33.333 18.64 0.00 0.00 1.89
632 635 9.197694 GTGCACACCAACATAAATAAAATAACA 57.802 29.630 13.17 0.00 0.00 2.41
633 636 9.764363 TGCACACCAACATAAATAAAATAACAA 57.236 25.926 0.00 0.00 0.00 2.83
669 672 8.991243 ACACATTATTTTCTTTGATCCACATG 57.009 30.769 0.00 0.00 0.00 3.21
670 673 7.546667 ACACATTATTTTCTTTGATCCACATGC 59.453 33.333 0.00 0.00 0.00 4.06
671 674 7.546316 CACATTATTTTCTTTGATCCACATGCA 59.454 33.333 0.00 0.00 0.00 3.96
672 675 7.546667 ACATTATTTTCTTTGATCCACATGCAC 59.453 33.333 0.00 0.00 0.00 4.57
673 676 3.557577 TTTCTTTGATCCACATGCACG 57.442 42.857 0.00 0.00 0.00 5.34
674 677 1.452110 TCTTTGATCCACATGCACGG 58.548 50.000 0.00 0.00 0.00 4.94
675 678 0.452987 CTTTGATCCACATGCACGGG 59.547 55.000 0.00 0.00 0.00 5.28
676 679 0.251121 TTTGATCCACATGCACGGGT 60.251 50.000 0.00 0.00 0.00 5.28
677 680 0.615850 TTGATCCACATGCACGGGTA 59.384 50.000 0.00 0.00 0.00 3.69
678 681 0.836606 TGATCCACATGCACGGGTAT 59.163 50.000 0.00 0.00 0.00 2.73
679 682 1.211703 TGATCCACATGCACGGGTATT 59.788 47.619 0.00 0.00 0.00 1.89
680 683 1.603802 GATCCACATGCACGGGTATTG 59.396 52.381 0.00 0.00 0.00 1.90
681 684 0.393673 TCCACATGCACGGGTATTGG 60.394 55.000 9.55 9.55 0.00 3.16
682 685 0.679640 CCACATGCACGGGTATTGGT 60.680 55.000 8.19 0.00 0.00 3.67
683 686 0.732571 CACATGCACGGGTATTGGTC 59.267 55.000 0.00 0.00 0.00 4.02
684 687 0.618458 ACATGCACGGGTATTGGTCT 59.382 50.000 0.00 0.00 0.00 3.85
685 688 1.834896 ACATGCACGGGTATTGGTCTA 59.165 47.619 0.00 0.00 0.00 2.59
686 689 2.158957 ACATGCACGGGTATTGGTCTAG 60.159 50.000 0.00 0.00 0.00 2.43
687 690 0.177141 TGCACGGGTATTGGTCTAGC 59.823 55.000 0.00 0.00 0.00 3.42
688 691 0.464452 GCACGGGTATTGGTCTAGCT 59.536 55.000 0.00 0.00 0.00 3.32
689 692 1.684983 GCACGGGTATTGGTCTAGCTA 59.315 52.381 0.00 0.00 0.00 3.32
690 693 2.101917 GCACGGGTATTGGTCTAGCTAA 59.898 50.000 0.00 0.00 0.00 3.09
691 694 3.799232 GCACGGGTATTGGTCTAGCTAAG 60.799 52.174 0.00 0.00 0.00 2.18
692 695 2.364647 ACGGGTATTGGTCTAGCTAAGC 59.635 50.000 0.00 0.00 0.00 3.09
693 696 2.364324 CGGGTATTGGTCTAGCTAAGCA 59.636 50.000 0.00 0.00 0.00 3.91
694 697 3.181469 CGGGTATTGGTCTAGCTAAGCAA 60.181 47.826 17.03 17.03 38.37 3.91
695 698 4.127907 GGGTATTGGTCTAGCTAAGCAAC 58.872 47.826 17.04 10.04 36.99 4.17
696 699 4.141688 GGGTATTGGTCTAGCTAAGCAACT 60.142 45.833 17.04 11.60 36.99 3.16
697 700 5.070047 GGGTATTGGTCTAGCTAAGCAACTA 59.930 44.000 17.04 10.97 36.99 2.24
698 701 5.984323 GGTATTGGTCTAGCTAAGCAACTAC 59.016 44.000 17.04 17.30 36.99 2.73
699 702 5.677319 ATTGGTCTAGCTAAGCAACTACA 57.323 39.130 17.04 2.60 36.99 2.74
700 703 5.677319 TTGGTCTAGCTAAGCAACTACAT 57.323 39.130 13.13 0.00 0.00 2.29
701 704 5.011090 TGGTCTAGCTAAGCAACTACATG 57.989 43.478 0.00 0.00 0.00 3.21
702 705 4.466370 TGGTCTAGCTAAGCAACTACATGT 59.534 41.667 2.69 2.69 0.00 3.21
703 706 5.044558 GGTCTAGCTAAGCAACTACATGTC 58.955 45.833 0.00 0.00 0.00 3.06
704 707 5.163499 GGTCTAGCTAAGCAACTACATGTCT 60.163 44.000 0.00 0.00 0.00 3.41
705 708 6.039493 GGTCTAGCTAAGCAACTACATGTCTA 59.961 42.308 0.00 0.00 0.00 2.59
706 709 6.913673 GTCTAGCTAAGCAACTACATGTCTAC 59.086 42.308 0.00 0.00 0.00 2.59
707 710 5.661056 AGCTAAGCAACTACATGTCTACA 57.339 39.130 0.00 0.00 0.00 2.74
708 711 6.227298 AGCTAAGCAACTACATGTCTACAT 57.773 37.500 0.00 0.00 36.96 2.29
709 712 7.348080 AGCTAAGCAACTACATGTCTACATA 57.652 36.000 0.00 0.00 34.26 2.29
710 713 7.203910 AGCTAAGCAACTACATGTCTACATAC 58.796 38.462 0.00 0.00 34.26 2.39
711 714 6.978659 GCTAAGCAACTACATGTCTACATACA 59.021 38.462 0.00 0.00 34.26 2.29
712 715 7.653713 GCTAAGCAACTACATGTCTACATACAT 59.346 37.037 0.00 0.00 40.75 2.29
723 726 6.178607 TGTCTACATACATGCATGAATCCT 57.821 37.500 32.75 12.71 0.00 3.24
724 727 7.301868 TGTCTACATACATGCATGAATCCTA 57.698 36.000 32.75 14.57 0.00 2.94
725 728 7.154656 TGTCTACATACATGCATGAATCCTAC 58.845 38.462 32.75 19.74 0.00 3.18
726 729 6.309009 GTCTACATACATGCATGAATCCTACG 59.691 42.308 32.75 9.58 0.00 3.51
727 730 4.960938 ACATACATGCATGAATCCTACGT 58.039 39.130 32.75 10.24 0.00 3.57
728 731 6.096673 ACATACATGCATGAATCCTACGTA 57.903 37.500 32.75 11.65 0.00 3.57
729 732 5.926542 ACATACATGCATGAATCCTACGTAC 59.073 40.000 32.75 0.00 0.00 3.67
730 733 4.400529 ACATGCATGAATCCTACGTACA 57.599 40.909 32.75 0.00 0.00 2.90
731 734 4.765273 ACATGCATGAATCCTACGTACAA 58.235 39.130 32.75 0.00 0.00 2.41
732 735 5.182487 ACATGCATGAATCCTACGTACAAA 58.818 37.500 32.75 0.00 0.00 2.83
733 736 5.645929 ACATGCATGAATCCTACGTACAAAA 59.354 36.000 32.75 0.00 0.00 2.44
734 737 5.794687 TGCATGAATCCTACGTACAAAAG 57.205 39.130 0.00 0.00 0.00 2.27
735 738 5.483811 TGCATGAATCCTACGTACAAAAGA 58.516 37.500 0.00 0.00 0.00 2.52
736 739 5.935206 TGCATGAATCCTACGTACAAAAGAA 59.065 36.000 0.00 0.00 0.00 2.52
737 740 6.428465 TGCATGAATCCTACGTACAAAAGAAA 59.572 34.615 0.00 0.00 0.00 2.52
738 741 7.041030 TGCATGAATCCTACGTACAAAAGAAAA 60.041 33.333 0.00 0.00 0.00 2.29
739 742 7.270579 GCATGAATCCTACGTACAAAAGAAAAC 59.729 37.037 0.00 0.00 0.00 2.43
740 743 7.789273 TGAATCCTACGTACAAAAGAAAACA 57.211 32.000 0.00 0.00 0.00 2.83
741 744 7.632721 TGAATCCTACGTACAAAAGAAAACAC 58.367 34.615 0.00 0.00 0.00 3.32
742 745 7.280428 TGAATCCTACGTACAAAAGAAAACACA 59.720 33.333 0.00 0.00 0.00 3.72
743 746 6.348621 TCCTACGTACAAAAGAAAACACAC 57.651 37.500 0.00 0.00 0.00 3.82
744 747 6.108015 TCCTACGTACAAAAGAAAACACACT 58.892 36.000 0.00 0.00 0.00 3.55
745 748 6.594937 TCCTACGTACAAAAGAAAACACACTT 59.405 34.615 0.00 0.00 0.00 3.16
746 749 6.685403 CCTACGTACAAAAGAAAACACACTTG 59.315 38.462 0.00 0.00 0.00 3.16
747 750 6.243811 ACGTACAAAAGAAAACACACTTGA 57.756 33.333 0.00 0.00 0.00 3.02
748 751 6.670233 ACGTACAAAAGAAAACACACTTGAA 58.330 32.000 0.00 0.00 0.00 2.69
749 752 7.140048 ACGTACAAAAGAAAACACACTTGAAA 58.860 30.769 0.00 0.00 0.00 2.69
750 753 7.648510 ACGTACAAAAGAAAACACACTTGAAAA 59.351 29.630 0.00 0.00 0.00 2.29
768 771 5.596845 TGAAAAGAACATGTTAGCCAAACC 58.403 37.500 11.95 0.00 37.27 3.27
769 772 5.362430 TGAAAAGAACATGTTAGCCAAACCT 59.638 36.000 11.95 0.00 37.27 3.50
770 773 4.853924 AAGAACATGTTAGCCAAACCTG 57.146 40.909 11.95 4.07 39.03 4.00
771 774 4.098914 AGAACATGTTAGCCAAACCTGA 57.901 40.909 11.95 0.00 37.22 3.86
772 775 4.074970 AGAACATGTTAGCCAAACCTGAG 58.925 43.478 11.95 0.00 37.22 3.35
773 776 2.795329 ACATGTTAGCCAAACCTGAGG 58.205 47.619 0.00 0.00 37.22 3.86
778 781 3.056328 GCCAAACCTGAGGCCGTC 61.056 66.667 0.00 0.00 45.18 4.79
779 782 2.750350 CCAAACCTGAGGCCGTCT 59.250 61.111 0.00 0.00 0.00 4.18
780 783 1.672356 CCAAACCTGAGGCCGTCTG 60.672 63.158 0.00 0.00 0.00 3.51
781 784 2.032681 AAACCTGAGGCCGTCTGC 59.967 61.111 0.00 0.00 40.16 4.26
792 795 4.758251 CGTCTGCCGCCCATCACA 62.758 66.667 0.00 0.00 0.00 3.58
793 796 2.124570 GTCTGCCGCCCATCACAT 60.125 61.111 0.00 0.00 0.00 3.21
794 797 2.124612 TCTGCCGCCCATCACATG 60.125 61.111 0.00 0.00 0.00 3.21
795 798 2.124612 CTGCCGCCCATCACATGA 60.125 61.111 0.00 0.00 0.00 3.07
796 799 2.124612 TGCCGCCCATCACATGAG 60.125 61.111 0.00 0.00 0.00 2.90
797 800 2.124570 GCCGCCCATCACATGAGT 60.125 61.111 0.00 0.00 0.00 3.41
799 802 2.475466 CCGCCCATCACATGAGTGC 61.475 63.158 0.00 0.00 45.49 4.40
800 803 2.475466 CGCCCATCACATGAGTGCC 61.475 63.158 0.00 0.00 45.49 5.01
801 804 1.077212 GCCCATCACATGAGTGCCT 60.077 57.895 0.00 0.00 45.49 4.75
802 805 1.099879 GCCCATCACATGAGTGCCTC 61.100 60.000 0.00 0.00 45.49 4.70
803 806 0.465097 CCCATCACATGAGTGCCTCC 60.465 60.000 0.00 0.00 45.49 4.30
804 807 0.812811 CCATCACATGAGTGCCTCCG 60.813 60.000 0.00 0.00 45.49 4.63
805 808 0.812811 CATCACATGAGTGCCTCCGG 60.813 60.000 0.00 0.00 45.49 5.14
873 876 1.101635 TGACATCTCTACTCCGGCGG 61.102 60.000 22.51 22.51 0.00 6.13
876 879 0.536687 CATCTCTACTCCGGCGGGTA 60.537 60.000 27.98 23.60 33.83 3.69
884 887 1.000233 TCCGGCGGGTAGGAAAGTA 60.000 57.895 27.98 0.00 32.86 2.24
885 888 1.039233 TCCGGCGGGTAGGAAAGTAG 61.039 60.000 27.98 0.00 32.86 2.57
886 889 1.440476 CGGCGGGTAGGAAAGTAGG 59.560 63.158 0.00 0.00 0.00 3.18
887 890 1.039233 CGGCGGGTAGGAAAGTAGGA 61.039 60.000 0.00 0.00 0.00 2.94
888 891 0.751452 GGCGGGTAGGAAAGTAGGAG 59.249 60.000 0.00 0.00 0.00 3.69
889 892 1.482954 GCGGGTAGGAAAGTAGGAGT 58.517 55.000 0.00 0.00 0.00 3.85
894 897 3.384146 GGGTAGGAAAGTAGGAGTACAGC 59.616 52.174 0.00 0.00 0.00 4.40
915 918 3.568430 GCCTAATTTACTTCCCGGGATTG 59.432 47.826 27.48 22.33 0.00 2.67
916 919 3.568430 CCTAATTTACTTCCCGGGATTGC 59.432 47.826 27.48 0.00 0.00 3.56
919 922 2.051334 TTACTTCCCGGGATTGCATG 57.949 50.000 27.48 12.73 0.00 4.06
965 998 3.768878 ACTGCCTACTTACTCACACTCT 58.231 45.455 0.00 0.00 0.00 3.24
966 999 4.919793 ACTGCCTACTTACTCACACTCTA 58.080 43.478 0.00 0.00 0.00 2.43
967 1000 4.701171 ACTGCCTACTTACTCACACTCTAC 59.299 45.833 0.00 0.00 0.00 2.59
968 1001 4.015084 TGCCTACTTACTCACACTCTACC 58.985 47.826 0.00 0.00 0.00 3.18
970 1003 4.705991 GCCTACTTACTCACACTCTACCTT 59.294 45.833 0.00 0.00 0.00 3.50
971 1004 5.393243 GCCTACTTACTCACACTCTACCTTG 60.393 48.000 0.00 0.00 0.00 3.61
972 1005 4.522722 ACTTACTCACACTCTACCTTGC 57.477 45.455 0.00 0.00 0.00 4.01
973 1006 4.153411 ACTTACTCACACTCTACCTTGCT 58.847 43.478 0.00 0.00 0.00 3.91
975 1008 2.598565 ACTCACACTCTACCTTGCTCA 58.401 47.619 0.00 0.00 0.00 4.26
976 1009 2.560542 ACTCACACTCTACCTTGCTCAG 59.439 50.000 0.00 0.00 0.00 3.35
977 1010 1.273606 TCACACTCTACCTTGCTCAGC 59.726 52.381 0.00 0.00 0.00 4.26
978 1011 1.274728 CACACTCTACCTTGCTCAGCT 59.725 52.381 0.00 0.00 0.00 4.24
1295 1346 1.432270 CGGAAGCTTGGGATCTTCGC 61.432 60.000 2.10 0.00 39.54 4.70
1299 1350 2.187946 CTTGGGATCTTCGCCGCT 59.812 61.111 0.00 0.00 0.00 5.52
1535 1586 3.315521 CGTCCGAATCGCGCTGAG 61.316 66.667 5.56 0.00 39.11 3.35
1551 1602 0.318120 TGAGCAGATGCACGAACAGA 59.682 50.000 7.68 0.00 45.16 3.41
1558 1609 0.238289 ATGCACGAACAGAAAAGCCG 59.762 50.000 0.00 0.00 0.00 5.52
1632 1695 1.747367 CGACGGCAGAGGAGAGACT 60.747 63.158 0.00 0.00 0.00 3.24
1682 1745 1.270550 GTTTCTGGCCATGTGGTTGAG 59.729 52.381 5.51 0.00 37.57 3.02
1716 1779 3.419759 GTGCCGCCATTCGACGTT 61.420 61.111 0.00 0.00 41.67 3.99
1729 1792 1.361271 GACGTTGTCAGACCGGACA 59.639 57.895 9.46 0.00 45.54 4.02
1800 1863 0.314935 CAGCCGTTCTTGCCAACATT 59.685 50.000 0.00 0.00 0.00 2.71
1806 1869 3.733727 CCGTTCTTGCCAACATTTACAAC 59.266 43.478 0.00 0.00 0.00 3.32
1818 1881 0.037975 TTTACAACGACCTCTCCGCC 60.038 55.000 0.00 0.00 0.00 6.13
1823 1886 3.068691 CGACCTCTCCGCCCTCAA 61.069 66.667 0.00 0.00 0.00 3.02
1824 1887 2.896443 GACCTCTCCGCCCTCAAG 59.104 66.667 0.00 0.00 0.00 3.02
1828 1891 2.604686 TCTCCGCCCTCAAGCACT 60.605 61.111 0.00 0.00 0.00 4.40
1835 1898 2.614481 CCGCCCTCAAGCACTACTTAAA 60.614 50.000 0.00 0.00 36.04 1.52
1840 1903 5.305585 CCCTCAAGCACTACTTAAACTTGA 58.694 41.667 0.00 0.00 43.18 3.02
1844 1907 5.820423 TCAAGCACTACTTAAACTTGAGCAA 59.180 36.000 0.00 0.00 41.20 3.91
1845 1908 5.931441 AGCACTACTTAAACTTGAGCAAG 57.069 39.130 8.60 8.60 43.79 4.01
1857 1920 1.077930 GAGCAAGAGCCATCAGCCA 60.078 57.895 0.00 0.00 45.47 4.75
2019 2097 1.050988 ATCCTGGCTACATCCACGCT 61.051 55.000 0.00 0.00 31.74 5.07
2022 2100 0.459899 CTGGCTACATCCACGCTGTA 59.540 55.000 0.00 0.00 31.74 2.74
2285 2372 3.126001 TGCCAACTCAAGTCGAAAGAT 57.874 42.857 0.00 0.00 45.19 2.40
2295 2382 2.745884 CGAAAGATGGCGTGGGCA 60.746 61.111 0.00 0.00 43.52 5.36
2320 2407 2.309613 ACAAGATGCAGCCTGAAAACA 58.690 42.857 7.72 0.00 0.00 2.83
2322 2409 3.250744 CAAGATGCAGCCTGAAAACATG 58.749 45.455 0.00 0.00 0.00 3.21
2331 2418 3.632145 AGCCTGAAAACATGTCGTTCTTT 59.368 39.130 18.14 7.71 36.59 2.52
2333 2420 3.730715 CCTGAAAACATGTCGTTCTTTGC 59.269 43.478 18.14 1.31 36.59 3.68
2362 2449 1.154205 CGATCCGGGCATGACAGTTC 61.154 60.000 0.00 0.00 0.00 3.01
2551 2650 4.026052 TCTGCAAGATGATACAGAGGACA 58.974 43.478 0.00 0.00 38.67 4.02
2560 2659 4.023980 TGATACAGAGGACAAGATTCCGT 58.976 43.478 0.00 0.00 41.04 4.69
2625 2726 3.265791 CAAAGGCAGGATACAGAGACAC 58.734 50.000 0.00 0.00 41.41 3.67
2723 2827 0.096976 CGTAGGGCAATTTCACGCAG 59.903 55.000 0.00 0.00 0.00 5.18
2800 2907 4.082523 CATCGTGTGGGCCGGTCT 62.083 66.667 5.77 0.00 0.00 3.85
2830 2937 4.863491 TGAGAATTTTGAAGAGCAAGCAC 58.137 39.130 0.00 0.00 37.87 4.40
2833 2940 4.099881 AGAATTTTGAAGAGCAAGCACCAA 59.900 37.500 0.00 0.00 37.87 3.67
2946 3053 1.943968 GCTGCAATTGGAGTGGACGTA 60.944 52.381 25.43 0.00 35.78 3.57
2948 3055 2.352651 CTGCAATTGGAGTGGACGTATG 59.647 50.000 18.09 0.00 0.00 2.39
3039 3146 3.815401 AGGCGAGTGCAATTTATATGGAC 59.185 43.478 0.00 0.00 45.35 4.02
3063 3170 0.240945 CCAAGTTGACGATGGCAACC 59.759 55.000 11.71 0.00 45.05 3.77
3123 3257 5.127845 GGTCACCATAAGAAGAGATGAGTCA 59.872 44.000 0.00 0.00 0.00 3.41
3213 3395 9.322773 CATGTCACTAATGTTGATGTCTTAGAT 57.677 33.333 0.00 0.00 0.00 1.98
3316 3510 9.319143 CAACTCTTCTCGAAGGTAATGAAATAT 57.681 33.333 6.81 0.00 38.88 1.28
3518 3774 0.804989 GACCATTCAAGCGGGTGAAG 59.195 55.000 6.66 0.00 40.72 3.02
3593 3850 4.573162 GACGGGAAGTCGGAACAG 57.427 61.111 0.00 0.00 40.43 3.16
3680 3938 6.968131 TGATCATCTTAAGAAACAAGTCGG 57.032 37.500 9.71 0.00 0.00 4.79
3720 3978 2.320781 CGGGACAGGAGAACCTATGAT 58.679 52.381 0.00 0.00 45.94 2.45
3806 4077 3.236896 AGAGTACCGTAATATGGTGGGG 58.763 50.000 14.13 0.00 38.15 4.96
3810 4081 2.332117 ACCGTAATATGGTGGGGTAGG 58.668 52.381 2.88 0.00 35.83 3.18
3825 4096 1.407712 GGTAGGCTTGCCGGTGAAATA 60.408 52.381 1.90 0.00 0.00 1.40
3839 4110 5.297776 CCGGTGAAATAATCTTCATCAGCTT 59.702 40.000 0.00 0.00 36.40 3.74
3859 4147 6.093219 CAGCTTATTGTGAGTGCAGAAACTAT 59.907 38.462 0.00 0.00 30.49 2.12
3864 4152 5.914898 TGTGAGTGCAGAAACTATAGCTA 57.085 39.130 0.00 0.00 0.00 3.32
3922 4215 6.200854 CCTGGTTGCTTTTTCTTTATGTTGTC 59.799 38.462 0.00 0.00 0.00 3.18
3935 4228 6.434028 TCTTTATGTTGTCAAATTCAGGGGAG 59.566 38.462 0.00 0.00 0.00 4.30
3940 4237 4.015872 TGTCAAATTCAGGGGAGTACAC 57.984 45.455 0.00 0.00 0.00 2.90
3996 4293 7.984391 ACGATATGCAATCTTCACATTAAACA 58.016 30.769 0.00 0.00 0.00 2.83
3999 4296 9.793252 GATATGCAATCTTCACATTAAACAACT 57.207 29.630 0.00 0.00 0.00 3.16
4008 4305 8.681806 TCTTCACATTAAACAACTGATTTGACA 58.318 29.630 0.00 0.00 38.73 3.58
4045 4344 4.065088 TGTGTGCTCTTGTTAACTGATCC 58.935 43.478 7.22 1.41 0.00 3.36
4070 4369 7.591426 CCTTTGACTTACATAAAACAAGCTGAC 59.409 37.037 0.00 0.00 0.00 3.51
4104 4403 3.733727 GCTGTGATTTAAACAAACGGTGG 59.266 43.478 0.00 0.00 0.00 4.61
4125 4424 5.136828 TGGTTCACAGTTGATGTACCAATT 58.863 37.500 1.49 0.00 44.17 2.32
4209 4525 4.215827 GGACATGAGCTCATTGGATGAATC 59.784 45.833 26.70 10.71 39.11 2.52
4213 4529 2.479656 GAGCTCATTGGATGAATCGAGC 59.520 50.000 9.40 0.00 41.13 5.03
4324 4647 9.082313 CCCATATAAAAATTAACATCTCAGCCT 57.918 33.333 0.00 0.00 0.00 4.58
4334 4657 2.964464 ACATCTCAGCCTCTACCTCATG 59.036 50.000 0.00 0.00 0.00 3.07
4429 4763 1.949257 CTTATCCCCGGCGCATTTC 59.051 57.895 10.83 0.00 0.00 2.17
4456 4791 5.072741 TCAAAGTTGAGGAGCTAGCAAAAT 58.927 37.500 18.83 0.00 32.50 1.82
4473 4808 7.088589 AGCAAAATGTACTTTACTATGCAGG 57.911 36.000 16.50 0.00 0.00 4.85
4482 4817 8.148351 TGTACTTTACTATGCAGGGAATACATC 58.852 37.037 0.00 0.00 0.00 3.06
4495 4831 5.012046 AGGGAATACATCGACTATGCAATGA 59.988 40.000 0.00 0.00 39.39 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.739022 ATTGTGTGCAATAACGTTCATTATG 57.261 32.000 2.82 0.00 42.96 1.90
19 20 6.563753 GCAAATTGTGTGCAATAACGTTCATT 60.564 34.615 2.82 0.51 43.89 2.57
148 151 8.830915 TGGATATTGGGTGTGTGTAAATTATT 57.169 30.769 0.00 0.00 0.00 1.40
197 200 9.010366 GTGTTTGCTTCTATTTTTAATCGGATC 57.990 33.333 0.00 0.00 0.00 3.36
199 202 7.806014 GTGTGTTTGCTTCTATTTTTAATCGGA 59.194 33.333 0.00 0.00 0.00 4.55
200 203 7.061789 GGTGTGTTTGCTTCTATTTTTAATCGG 59.938 37.037 0.00 0.00 0.00 4.18
263 266 6.398234 TTTGTTGTTGTGTAGTTGCCATAT 57.602 33.333 0.00 0.00 0.00 1.78
264 267 5.836821 TTTGTTGTTGTGTAGTTGCCATA 57.163 34.783 0.00 0.00 0.00 2.74
274 277 1.724082 GTTGCGCTTTTGTTGTTGTGT 59.276 42.857 9.73 0.00 0.00 3.72
367 370 7.116805 GCAAATTTTCAATTTGGACTAGTCTGG 59.883 37.037 21.88 0.35 38.91 3.86
413 416 3.883631 TGCATATTATGAAGCAGTGCG 57.116 42.857 10.00 0.00 34.06 5.34
419 422 6.585322 GCCTTTGATCTTGCATATTATGAAGC 59.415 38.462 7.87 0.00 0.00 3.86
456 459 8.973378 CGTAAATCACATTGGTGTTTAACATTT 58.027 29.630 0.00 0.00 45.45 2.32
457 460 8.353684 TCGTAAATCACATTGGTGTTTAACATT 58.646 29.630 0.00 0.00 45.45 2.71
458 461 7.877003 TCGTAAATCACATTGGTGTTTAACAT 58.123 30.769 0.00 0.00 45.45 2.71
459 462 7.260558 TCGTAAATCACATTGGTGTTTAACA 57.739 32.000 0.00 0.00 45.45 2.41
460 463 7.483691 GGATCGTAAATCACATTGGTGTTTAAC 59.516 37.037 0.00 0.00 45.45 2.01
461 464 7.175119 TGGATCGTAAATCACATTGGTGTTTAA 59.825 33.333 0.00 0.00 45.45 1.52
462 465 6.655425 TGGATCGTAAATCACATTGGTGTTTA 59.345 34.615 0.00 0.00 45.45 2.01
463 466 5.475220 TGGATCGTAAATCACATTGGTGTTT 59.525 36.000 0.00 0.00 45.45 2.83
464 467 5.007034 TGGATCGTAAATCACATTGGTGTT 58.993 37.500 0.00 0.00 45.45 3.32
465 468 4.584874 TGGATCGTAAATCACATTGGTGT 58.415 39.130 0.00 0.00 45.45 4.16
466 469 5.756195 ATGGATCGTAAATCACATTGGTG 57.244 39.130 0.00 0.00 46.66 4.17
467 470 5.885352 TGAATGGATCGTAAATCACATTGGT 59.115 36.000 0.00 0.00 0.00 3.67
468 471 6.201517 GTGAATGGATCGTAAATCACATTGG 58.798 40.000 0.00 0.00 37.65 3.16
469 472 5.903530 CGTGAATGGATCGTAAATCACATTG 59.096 40.000 12.87 0.00 37.59 2.82
470 473 5.504010 GCGTGAATGGATCGTAAATCACATT 60.504 40.000 12.87 0.00 37.59 2.71
471 474 4.024893 GCGTGAATGGATCGTAAATCACAT 60.025 41.667 12.87 0.00 37.59 3.21
472 475 3.308595 GCGTGAATGGATCGTAAATCACA 59.691 43.478 12.87 0.00 37.59 3.58
473 476 3.555956 AGCGTGAATGGATCGTAAATCAC 59.444 43.478 0.00 0.00 35.13 3.06
474 477 3.792401 AGCGTGAATGGATCGTAAATCA 58.208 40.909 0.00 0.00 0.00 2.57
475 478 4.795970 AAGCGTGAATGGATCGTAAATC 57.204 40.909 0.00 0.00 0.00 2.17
476 479 9.817809 ATATATAAGCGTGAATGGATCGTAAAT 57.182 29.630 0.00 0.00 0.00 1.40
477 480 9.647797 AATATATAAGCGTGAATGGATCGTAAA 57.352 29.630 0.00 0.00 0.00 2.01
478 481 9.083080 CAATATATAAGCGTGAATGGATCGTAA 57.917 33.333 0.00 0.00 0.00 3.18
479 482 8.248253 ACAATATATAAGCGTGAATGGATCGTA 58.752 33.333 0.00 0.00 0.00 3.43
480 483 7.097192 ACAATATATAAGCGTGAATGGATCGT 58.903 34.615 0.00 0.00 0.00 3.73
481 484 7.525688 ACAATATATAAGCGTGAATGGATCG 57.474 36.000 0.00 0.00 0.00 3.69
482 485 9.587772 AGTACAATATATAAGCGTGAATGGATC 57.412 33.333 0.00 0.00 0.00 3.36
483 486 9.587772 GAGTACAATATATAAGCGTGAATGGAT 57.412 33.333 0.00 0.00 0.00 3.41
484 487 8.581578 TGAGTACAATATATAAGCGTGAATGGA 58.418 33.333 0.00 0.00 0.00 3.41
485 488 8.757164 TGAGTACAATATATAAGCGTGAATGG 57.243 34.615 0.00 0.00 0.00 3.16
524 527 8.509690 GGACGATTAATCATCAATGATGTTGAT 58.490 33.333 21.13 15.80 46.22 2.57
525 528 7.041167 GGGACGATTAATCATCAATGATGTTGA 60.041 37.037 21.13 12.44 46.22 3.18
526 529 7.040892 AGGGACGATTAATCATCAATGATGTTG 60.041 37.037 21.13 9.27 46.22 3.33
527 530 7.000472 AGGGACGATTAATCATCAATGATGTT 59.000 34.615 21.13 16.38 46.22 2.71
528 531 6.537355 AGGGACGATTAATCATCAATGATGT 58.463 36.000 21.13 7.28 46.22 3.06
529 532 6.652062 TGAGGGACGATTAATCATCAATGATG 59.348 38.462 16.63 16.63 46.22 3.07
531 534 6.173427 TGAGGGACGATTAATCATCAATGA 57.827 37.500 13.13 0.00 41.70 2.57
532 535 6.866010 TTGAGGGACGATTAATCATCAATG 57.134 37.500 13.13 0.00 0.00 2.82
533 536 9.224267 CTTATTGAGGGACGATTAATCATCAAT 57.776 33.333 21.06 21.06 37.58 2.57
534 537 8.210946 ACTTATTGAGGGACGATTAATCATCAA 58.789 33.333 13.13 13.81 31.72 2.57
535 538 7.735917 ACTTATTGAGGGACGATTAATCATCA 58.264 34.615 13.13 6.94 0.00 3.07
536 539 8.608844 AACTTATTGAGGGACGATTAATCATC 57.391 34.615 15.57 9.55 0.00 2.92
537 540 9.490379 GTAACTTATTGAGGGACGATTAATCAT 57.510 33.333 15.57 0.00 0.00 2.45
538 541 8.479689 TGTAACTTATTGAGGGACGATTAATCA 58.520 33.333 15.57 0.00 0.00 2.57
539 542 8.762426 GTGTAACTTATTGAGGGACGATTAATC 58.238 37.037 5.30 5.30 0.00 1.75
540 543 7.437267 CGTGTAACTTATTGAGGGACGATTAAT 59.563 37.037 0.00 0.00 31.75 1.40
541 544 6.753279 CGTGTAACTTATTGAGGGACGATTAA 59.247 38.462 0.00 0.00 31.75 1.40
542 545 6.127647 ACGTGTAACTTATTGAGGGACGATTA 60.128 38.462 0.00 0.00 31.75 1.75
543 546 5.107133 CGTGTAACTTATTGAGGGACGATT 58.893 41.667 0.00 0.00 31.75 3.34
544 547 4.159135 ACGTGTAACTTATTGAGGGACGAT 59.841 41.667 0.00 0.00 31.75 3.73
545 548 3.507233 ACGTGTAACTTATTGAGGGACGA 59.493 43.478 0.00 0.00 31.75 4.20
546 549 3.611113 CACGTGTAACTTATTGAGGGACG 59.389 47.826 7.58 0.00 31.75 4.79
547 550 3.930848 CCACGTGTAACTTATTGAGGGAC 59.069 47.826 15.65 0.00 31.75 4.46
548 551 3.833650 TCCACGTGTAACTTATTGAGGGA 59.166 43.478 15.65 0.00 31.75 4.20
549 552 3.930848 GTCCACGTGTAACTTATTGAGGG 59.069 47.826 15.65 0.00 31.75 4.30
550 553 3.611113 CGTCCACGTGTAACTTATTGAGG 59.389 47.826 15.65 3.10 31.75 3.86
551 554 4.817987 CGTCCACGTGTAACTTATTGAG 57.182 45.455 15.65 0.00 31.75 3.02
565 568 3.636043 GGTGTGTGCACGTCCACG 61.636 66.667 20.76 0.00 46.13 4.94
566 569 2.512745 TGGTGTGTGCACGTCCAC 60.513 61.111 19.91 19.91 46.13 4.02
567 570 2.512745 GTGGTGTGTGCACGTCCA 60.513 61.111 18.84 18.84 46.13 4.02
568 571 2.512745 TGTGGTGTGTGCACGTCC 60.513 61.111 13.13 14.22 46.13 4.79
569 572 1.436195 ATGTGTGGTGTGTGCACGTC 61.436 55.000 13.13 8.59 46.13 4.34
570 573 1.451207 ATGTGTGGTGTGTGCACGT 60.451 52.632 13.13 0.00 46.13 4.49
571 574 1.009788 CATGTGTGGTGTGTGCACG 60.010 57.895 13.13 0.00 46.13 5.34
572 575 1.100463 TCCATGTGTGGTGTGTGCAC 61.100 55.000 10.75 10.75 46.16 4.57
573 576 0.394899 TTCCATGTGTGGTGTGTGCA 60.395 50.000 0.00 0.00 46.16 4.57
574 577 0.961019 ATTCCATGTGTGGTGTGTGC 59.039 50.000 0.00 0.00 46.16 4.57
575 578 2.227149 CTCATTCCATGTGTGGTGTGTG 59.773 50.000 0.00 0.00 46.16 3.82
576 579 2.507484 CTCATTCCATGTGTGGTGTGT 58.493 47.619 0.00 0.00 46.16 3.72
577 580 1.814394 CCTCATTCCATGTGTGGTGTG 59.186 52.381 0.00 0.00 46.16 3.82
578 581 1.425066 ACCTCATTCCATGTGTGGTGT 59.575 47.619 7.52 0.00 46.16 4.16
579 582 2.205022 ACCTCATTCCATGTGTGGTG 57.795 50.000 7.52 0.00 46.16 4.17
580 583 2.978156 AACCTCATTCCATGTGTGGT 57.022 45.000 3.41 3.41 46.16 4.16
582 585 3.684908 TGGTAACCTCATTCCATGTGTG 58.315 45.455 0.00 0.00 0.00 3.82
583 586 3.873801 GCTGGTAACCTCATTCCATGTGT 60.874 47.826 0.00 0.00 0.00 3.72
584 587 2.684881 GCTGGTAACCTCATTCCATGTG 59.315 50.000 0.00 0.00 0.00 3.21
585 588 2.680805 CGCTGGTAACCTCATTCCATGT 60.681 50.000 0.00 0.00 0.00 3.21
586 589 1.942657 CGCTGGTAACCTCATTCCATG 59.057 52.381 0.00 0.00 0.00 3.66
587 590 1.559682 ACGCTGGTAACCTCATTCCAT 59.440 47.619 0.00 0.00 0.00 3.41
588 591 0.981183 ACGCTGGTAACCTCATTCCA 59.019 50.000 0.00 0.00 0.00 3.53
589 592 1.369625 CACGCTGGTAACCTCATTCC 58.630 55.000 0.00 0.00 0.00 3.01
590 593 0.727398 GCACGCTGGTAACCTCATTC 59.273 55.000 0.00 0.00 0.00 2.67
591 594 0.036164 TGCACGCTGGTAACCTCATT 59.964 50.000 0.00 0.00 0.00 2.57
592 595 0.673644 GTGCACGCTGGTAACCTCAT 60.674 55.000 0.00 0.00 0.00 2.90
593 596 1.301401 GTGCACGCTGGTAACCTCA 60.301 57.895 0.00 0.00 0.00 3.86
594 597 1.301401 TGTGCACGCTGGTAACCTC 60.301 57.895 13.13 0.00 0.00 3.85
595 598 1.597027 GTGTGCACGCTGGTAACCT 60.597 57.895 22.93 0.00 0.00 3.50
596 599 2.613506 GGTGTGCACGCTGGTAACC 61.614 63.158 28.09 16.44 0.00 2.85
597 600 1.440938 TTGGTGTGCACGCTGGTAAC 61.441 55.000 28.09 11.24 0.00 2.50
598 601 1.153147 TTGGTGTGCACGCTGGTAA 60.153 52.632 28.09 15.75 0.00 2.85
599 602 1.890041 GTTGGTGTGCACGCTGGTA 60.890 57.895 28.09 11.02 0.00 3.25
600 603 3.209097 GTTGGTGTGCACGCTGGT 61.209 61.111 28.09 0.00 0.00 4.00
601 604 1.233950 TATGTTGGTGTGCACGCTGG 61.234 55.000 28.09 0.00 0.00 4.85
602 605 0.590682 TTATGTTGGTGTGCACGCTG 59.409 50.000 28.09 0.00 0.00 5.18
603 606 1.313772 TTTATGTTGGTGTGCACGCT 58.686 45.000 28.09 11.97 0.00 5.07
604 607 2.346099 ATTTATGTTGGTGTGCACGC 57.654 45.000 22.19 22.19 0.00 5.34
605 608 6.942886 ATTTTATTTATGTTGGTGTGCACG 57.057 33.333 13.13 0.00 0.00 5.34
606 609 9.197694 TGTTATTTTATTTATGTTGGTGTGCAC 57.802 29.630 10.75 10.75 0.00 4.57
607 610 9.764363 TTGTTATTTTATTTATGTTGGTGTGCA 57.236 25.926 0.00 0.00 0.00 4.57
643 646 9.426837 CATGTGGATCAAAGAAAATAATGTGTT 57.573 29.630 0.00 0.00 0.00 3.32
644 647 7.546667 GCATGTGGATCAAAGAAAATAATGTGT 59.453 33.333 0.00 0.00 0.00 3.72
645 648 7.546316 TGCATGTGGATCAAAGAAAATAATGTG 59.454 33.333 0.00 0.00 0.00 3.21
646 649 7.546667 GTGCATGTGGATCAAAGAAAATAATGT 59.453 33.333 0.00 0.00 0.00 2.71
647 650 7.253850 CGTGCATGTGGATCAAAGAAAATAATG 60.254 37.037 0.00 0.00 0.00 1.90
648 651 6.753279 CGTGCATGTGGATCAAAGAAAATAAT 59.247 34.615 0.00 0.00 0.00 1.28
649 652 6.092092 CGTGCATGTGGATCAAAGAAAATAA 58.908 36.000 0.00 0.00 0.00 1.40
650 653 5.392919 CCGTGCATGTGGATCAAAGAAAATA 60.393 40.000 4.96 0.00 0.00 1.40
651 654 4.487948 CGTGCATGTGGATCAAAGAAAAT 58.512 39.130 0.00 0.00 0.00 1.82
652 655 3.305267 CCGTGCATGTGGATCAAAGAAAA 60.305 43.478 4.96 0.00 0.00 2.29
653 656 2.228582 CCGTGCATGTGGATCAAAGAAA 59.771 45.455 4.96 0.00 0.00 2.52
654 657 1.811965 CCGTGCATGTGGATCAAAGAA 59.188 47.619 4.96 0.00 0.00 2.52
655 658 1.452110 CCGTGCATGTGGATCAAAGA 58.548 50.000 4.96 0.00 0.00 2.52
656 659 0.452987 CCCGTGCATGTGGATCAAAG 59.547 55.000 4.96 0.00 0.00 2.77
657 660 0.251121 ACCCGTGCATGTGGATCAAA 60.251 50.000 17.31 0.00 0.00 2.69
658 661 0.615850 TACCCGTGCATGTGGATCAA 59.384 50.000 17.31 0.00 0.00 2.57
659 662 0.836606 ATACCCGTGCATGTGGATCA 59.163 50.000 17.31 5.47 0.00 2.92
660 663 1.603802 CAATACCCGTGCATGTGGATC 59.396 52.381 17.31 0.00 0.00 3.36
661 664 1.679139 CAATACCCGTGCATGTGGAT 58.321 50.000 17.31 0.27 0.00 3.41
662 665 0.393673 CCAATACCCGTGCATGTGGA 60.394 55.000 17.31 0.00 0.00 4.02
663 666 0.679640 ACCAATACCCGTGCATGTGG 60.680 55.000 10.20 10.20 0.00 4.17
664 667 0.732571 GACCAATACCCGTGCATGTG 59.267 55.000 4.96 0.00 0.00 3.21
665 668 0.618458 AGACCAATACCCGTGCATGT 59.382 50.000 4.96 0.00 0.00 3.21
666 669 2.483876 CTAGACCAATACCCGTGCATG 58.516 52.381 0.00 0.00 0.00 4.06
667 670 1.202651 GCTAGACCAATACCCGTGCAT 60.203 52.381 0.00 0.00 0.00 3.96
668 671 0.177141 GCTAGACCAATACCCGTGCA 59.823 55.000 0.00 0.00 0.00 4.57
669 672 0.464452 AGCTAGACCAATACCCGTGC 59.536 55.000 0.00 0.00 0.00 5.34
670 673 3.799232 GCTTAGCTAGACCAATACCCGTG 60.799 52.174 0.00 0.00 0.00 4.94
671 674 2.364647 GCTTAGCTAGACCAATACCCGT 59.635 50.000 0.00 0.00 0.00 5.28
672 675 2.364324 TGCTTAGCTAGACCAATACCCG 59.636 50.000 5.60 0.00 0.00 5.28
673 676 4.127907 GTTGCTTAGCTAGACCAATACCC 58.872 47.826 5.60 0.00 0.00 3.69
674 677 5.024785 AGTTGCTTAGCTAGACCAATACC 57.975 43.478 5.60 0.00 0.00 2.73
675 678 6.570692 TGTAGTTGCTTAGCTAGACCAATAC 58.429 40.000 5.60 0.00 0.00 1.89
676 679 6.785337 TGTAGTTGCTTAGCTAGACCAATA 57.215 37.500 5.60 0.00 0.00 1.90
677 680 5.677319 TGTAGTTGCTTAGCTAGACCAAT 57.323 39.130 5.60 0.00 0.00 3.16
678 681 5.046591 ACATGTAGTTGCTTAGCTAGACCAA 60.047 40.000 5.60 0.00 0.00 3.67
679 682 4.466370 ACATGTAGTTGCTTAGCTAGACCA 59.534 41.667 5.60 0.00 0.00 4.02
680 683 5.012328 ACATGTAGTTGCTTAGCTAGACC 57.988 43.478 5.60 0.00 0.00 3.85
681 684 5.897050 AGACATGTAGTTGCTTAGCTAGAC 58.103 41.667 5.60 1.92 0.00 2.59
682 685 6.602009 TGTAGACATGTAGTTGCTTAGCTAGA 59.398 38.462 5.60 0.00 0.00 2.43
683 686 6.796426 TGTAGACATGTAGTTGCTTAGCTAG 58.204 40.000 5.60 0.00 0.00 3.42
684 687 6.769134 TGTAGACATGTAGTTGCTTAGCTA 57.231 37.500 5.60 0.00 0.00 3.32
685 688 5.661056 TGTAGACATGTAGTTGCTTAGCT 57.339 39.130 5.60 0.00 0.00 3.32
686 689 6.978659 TGTATGTAGACATGTAGTTGCTTAGC 59.021 38.462 0.00 0.00 37.15 3.09
699 702 6.776744 AGGATTCATGCATGTATGTAGACAT 58.223 36.000 25.43 5.09 40.78 3.06
700 703 6.178607 AGGATTCATGCATGTATGTAGACA 57.821 37.500 25.43 0.46 0.00 3.41
701 704 6.309009 CGTAGGATTCATGCATGTATGTAGAC 59.691 42.308 25.43 14.92 0.00 2.59
702 705 6.015434 ACGTAGGATTCATGCATGTATGTAGA 60.015 38.462 25.43 10.64 0.00 2.59
703 706 6.159293 ACGTAGGATTCATGCATGTATGTAG 58.841 40.000 25.43 13.53 0.00 2.74
704 707 6.096673 ACGTAGGATTCATGCATGTATGTA 57.903 37.500 25.43 13.79 0.00 2.29
705 708 4.960938 ACGTAGGATTCATGCATGTATGT 58.039 39.130 25.43 17.47 0.00 2.29
706 709 5.925969 TGTACGTAGGATTCATGCATGTATG 59.074 40.000 25.43 16.85 0.00 2.39
707 710 6.096673 TGTACGTAGGATTCATGCATGTAT 57.903 37.500 25.43 21.49 0.00 2.29
708 711 5.523438 TGTACGTAGGATTCATGCATGTA 57.477 39.130 25.43 17.45 0.00 2.29
709 712 4.400529 TGTACGTAGGATTCATGCATGT 57.599 40.909 25.43 8.12 0.00 3.21
710 713 5.733226 TTTGTACGTAGGATTCATGCATG 57.267 39.130 21.07 21.07 0.00 4.06
711 714 6.112734 TCTTTTGTACGTAGGATTCATGCAT 58.887 36.000 0.00 0.00 0.00 3.96
712 715 5.483811 TCTTTTGTACGTAGGATTCATGCA 58.516 37.500 0.00 0.00 0.00 3.96
713 716 6.417191 TTCTTTTGTACGTAGGATTCATGC 57.583 37.500 0.00 0.00 0.00 4.06
714 717 8.286800 TGTTTTCTTTTGTACGTAGGATTCATG 58.713 33.333 0.00 0.00 0.00 3.07
715 718 8.287503 GTGTTTTCTTTTGTACGTAGGATTCAT 58.712 33.333 0.00 0.00 0.00 2.57
716 719 7.280428 TGTGTTTTCTTTTGTACGTAGGATTCA 59.720 33.333 0.00 0.00 0.00 2.57
717 720 7.585210 GTGTGTTTTCTTTTGTACGTAGGATTC 59.415 37.037 0.00 0.00 0.00 2.52
718 721 7.281549 AGTGTGTTTTCTTTTGTACGTAGGATT 59.718 33.333 0.00 0.00 0.00 3.01
719 722 6.764560 AGTGTGTTTTCTTTTGTACGTAGGAT 59.235 34.615 0.00 0.00 0.00 3.24
720 723 6.108015 AGTGTGTTTTCTTTTGTACGTAGGA 58.892 36.000 0.00 0.00 0.00 2.94
721 724 6.354039 AGTGTGTTTTCTTTTGTACGTAGG 57.646 37.500 0.00 0.00 0.00 3.18
722 725 7.457868 TCAAGTGTGTTTTCTTTTGTACGTAG 58.542 34.615 0.00 0.00 0.00 3.51
723 726 7.361889 TCAAGTGTGTTTTCTTTTGTACGTA 57.638 32.000 0.00 0.00 0.00 3.57
724 727 6.243811 TCAAGTGTGTTTTCTTTTGTACGT 57.756 33.333 0.00 0.00 0.00 3.57
725 728 7.555639 TTTCAAGTGTGTTTTCTTTTGTACG 57.444 32.000 0.00 0.00 0.00 3.67
726 729 9.187455 TCTTTTCAAGTGTGTTTTCTTTTGTAC 57.813 29.630 0.00 0.00 0.00 2.90
727 730 9.751542 TTCTTTTCAAGTGTGTTTTCTTTTGTA 57.248 25.926 0.00 0.00 0.00 2.41
728 731 8.547894 GTTCTTTTCAAGTGTGTTTTCTTTTGT 58.452 29.630 0.00 0.00 0.00 2.83
729 732 8.547069 TGTTCTTTTCAAGTGTGTTTTCTTTTG 58.453 29.630 0.00 0.00 0.00 2.44
730 733 8.655651 TGTTCTTTTCAAGTGTGTTTTCTTTT 57.344 26.923 0.00 0.00 0.00 2.27
731 734 8.711457 CATGTTCTTTTCAAGTGTGTTTTCTTT 58.289 29.630 0.00 0.00 0.00 2.52
732 735 7.872483 ACATGTTCTTTTCAAGTGTGTTTTCTT 59.128 29.630 0.00 0.00 0.00 2.52
733 736 7.378181 ACATGTTCTTTTCAAGTGTGTTTTCT 58.622 30.769 0.00 0.00 0.00 2.52
734 737 7.581011 ACATGTTCTTTTCAAGTGTGTTTTC 57.419 32.000 0.00 0.00 0.00 2.29
735 738 7.961325 AACATGTTCTTTTCAAGTGTGTTTT 57.039 28.000 4.92 0.00 0.00 2.43
736 739 7.275560 GCTAACATGTTCTTTTCAAGTGTGTTT 59.724 33.333 15.85 0.00 0.00 2.83
737 740 6.751888 GCTAACATGTTCTTTTCAAGTGTGTT 59.248 34.615 15.85 0.00 0.00 3.32
738 741 6.265577 GCTAACATGTTCTTTTCAAGTGTGT 58.734 36.000 15.85 0.00 0.00 3.72
739 742 5.687285 GGCTAACATGTTCTTTTCAAGTGTG 59.313 40.000 15.85 0.00 0.00 3.82
740 743 5.359576 TGGCTAACATGTTCTTTTCAAGTGT 59.640 36.000 15.85 0.00 0.00 3.55
741 744 5.830912 TGGCTAACATGTTCTTTTCAAGTG 58.169 37.500 15.85 0.00 0.00 3.16
742 745 6.463995 TTGGCTAACATGTTCTTTTCAAGT 57.536 33.333 15.85 0.00 0.00 3.16
743 746 6.200854 GGTTTGGCTAACATGTTCTTTTCAAG 59.799 38.462 15.85 6.13 38.55 3.02
744 747 6.045955 GGTTTGGCTAACATGTTCTTTTCAA 58.954 36.000 15.85 10.75 38.55 2.69
745 748 5.362430 AGGTTTGGCTAACATGTTCTTTTCA 59.638 36.000 15.85 5.26 38.55 2.69
746 749 5.691754 CAGGTTTGGCTAACATGTTCTTTTC 59.308 40.000 15.85 2.67 42.14 2.29
747 750 5.362430 TCAGGTTTGGCTAACATGTTCTTTT 59.638 36.000 21.79 0.00 46.01 2.27
748 751 4.892934 TCAGGTTTGGCTAACATGTTCTTT 59.107 37.500 21.79 0.00 46.01 2.52
749 752 4.469657 TCAGGTTTGGCTAACATGTTCTT 58.530 39.130 21.79 0.00 46.01 2.52
750 753 4.074970 CTCAGGTTTGGCTAACATGTTCT 58.925 43.478 21.79 0.00 46.01 3.01
751 754 3.191371 CCTCAGGTTTGGCTAACATGTTC 59.809 47.826 21.79 1.02 46.01 3.18
752 755 3.157087 CCTCAGGTTTGGCTAACATGTT 58.843 45.455 21.79 16.68 46.01 2.71
753 756 2.795329 CCTCAGGTTTGGCTAACATGT 58.205 47.619 21.79 0.00 46.01 3.21
754 757 1.474077 GCCTCAGGTTTGGCTAACATG 59.526 52.381 17.97 17.97 46.97 3.21
755 758 1.839424 GCCTCAGGTTTGGCTAACAT 58.161 50.000 13.54 3.55 45.26 2.71
756 759 3.339547 GCCTCAGGTTTGGCTAACA 57.660 52.632 13.54 0.00 45.26 2.41
762 765 1.672356 CAGACGGCCTCAGGTTTGG 60.672 63.158 0.00 0.00 0.00 3.28
763 766 2.328099 GCAGACGGCCTCAGGTTTG 61.328 63.158 0.00 0.00 36.11 2.93
764 767 2.032681 GCAGACGGCCTCAGGTTT 59.967 61.111 0.00 0.00 36.11 3.27
776 779 2.124570 ATGTGATGGGCGGCAGAC 60.125 61.111 12.47 1.45 0.00 3.51
777 780 2.124612 CATGTGATGGGCGGCAGA 60.125 61.111 12.47 0.00 0.00 4.26
778 781 2.124612 TCATGTGATGGGCGGCAG 60.125 61.111 12.47 0.00 0.00 4.85
779 782 2.124612 CTCATGTGATGGGCGGCA 60.125 61.111 12.47 0.00 0.00 5.69
780 783 2.124570 ACTCATGTGATGGGCGGC 60.125 61.111 0.00 0.00 32.68 6.53
781 784 2.475466 GCACTCATGTGATGGGCGG 61.475 63.158 0.94 0.00 46.55 6.13
782 785 2.475466 GGCACTCATGTGATGGGCG 61.475 63.158 0.94 0.00 46.55 6.13
783 786 1.077212 AGGCACTCATGTGATGGGC 60.077 57.895 0.94 3.47 46.55 5.36
806 809 1.898574 GTGGGTGGTGCTGGACAAG 60.899 63.158 0.77 0.00 0.00 3.16
807 810 2.194597 GTGGGTGGTGCTGGACAA 59.805 61.111 0.77 0.00 0.00 3.18
808 811 3.884774 GGTGGGTGGTGCTGGACA 61.885 66.667 0.77 0.00 0.00 4.02
809 812 3.133365 AAGGTGGGTGGTGCTGGAC 62.133 63.158 0.00 0.00 0.00 4.02
810 813 2.776526 AAGGTGGGTGGTGCTGGA 60.777 61.111 0.00 0.00 0.00 3.86
811 814 2.598394 CAAGGTGGGTGGTGCTGG 60.598 66.667 0.00 0.00 0.00 4.85
812 815 3.297620 GCAAGGTGGGTGGTGCTG 61.298 66.667 0.00 0.00 34.13 4.41
813 816 3.501911 AGCAAGGTGGGTGGTGCT 61.502 61.111 0.00 0.00 42.40 4.40
873 876 3.384146 GGCTGTACTCCTACTTTCCTACC 59.616 52.174 0.00 0.00 0.00 3.18
876 879 3.476485 AGGCTGTACTCCTACTTTCCT 57.524 47.619 5.60 0.00 30.79 3.36
884 887 5.130643 GGGAAGTAAATTAGGCTGTACTCCT 59.869 44.000 11.15 11.15 37.72 3.69
885 888 5.366460 GGGAAGTAAATTAGGCTGTACTCC 58.634 45.833 0.00 4.04 0.00 3.85
886 889 5.048507 CGGGAAGTAAATTAGGCTGTACTC 58.951 45.833 0.00 0.00 0.00 2.59
887 890 4.141779 CCGGGAAGTAAATTAGGCTGTACT 60.142 45.833 0.00 0.00 0.00 2.73
888 891 4.124970 CCGGGAAGTAAATTAGGCTGTAC 58.875 47.826 0.00 0.00 0.00 2.90
889 892 3.135167 CCCGGGAAGTAAATTAGGCTGTA 59.865 47.826 18.48 0.00 0.00 2.74
894 897 3.568430 GCAATCCCGGGAAGTAAATTAGG 59.432 47.826 30.84 6.25 0.00 2.69
943 946 4.919793 AGAGTGTGAGTAAGTAGGCAGTA 58.080 43.478 0.00 0.00 0.00 2.74
951 954 4.153411 AGCAAGGTAGAGTGTGAGTAAGT 58.847 43.478 0.00 0.00 0.00 2.24
953 956 4.149598 TGAGCAAGGTAGAGTGTGAGTAA 58.850 43.478 0.00 0.00 0.00 2.24
965 998 1.605058 GGTCGGAGCTGAGCAAGGTA 61.605 60.000 7.39 0.00 36.52 3.08
966 999 2.659610 GTCGGAGCTGAGCAAGGT 59.340 61.111 7.39 0.00 40.07 3.50
967 1000 2.125350 GGTCGGAGCTGAGCAAGG 60.125 66.667 7.39 0.00 36.41 3.61
968 1001 2.125350 GGGTCGGAGCTGAGCAAG 60.125 66.667 7.39 0.00 38.10 4.01
970 1003 3.385384 CTGGGTCGGAGCTGAGCA 61.385 66.667 7.39 0.00 38.10 4.26
971 1004 3.071206 TCTGGGTCGGAGCTGAGC 61.071 66.667 7.19 0.00 35.66 4.26
972 1005 3.205395 CTCTGGGTCGGAGCTGAG 58.795 66.667 7.19 10.82 29.69 3.35
1042 1090 3.272334 GATGATCGCGGTGGTGGC 61.272 66.667 6.13 0.00 0.00 5.01
1417 1468 2.350895 CACGGCCATGTCCTCCAA 59.649 61.111 2.24 0.00 0.00 3.53
1512 1563 3.262686 GCGATTCGGACGGCTTCC 61.263 66.667 8.34 0.00 41.75 3.46
1524 1575 2.532256 GCATCTGCTCAGCGCGATT 61.532 57.895 12.10 0.00 43.27 3.34
1535 1586 2.578495 CTTTTCTGTTCGTGCATCTGC 58.422 47.619 0.00 0.00 42.50 4.26
1551 1602 4.293648 GGGGCAAACGCGGCTTTT 62.294 61.111 12.47 0.00 0.00 2.27
1632 1695 4.349503 AGCAATGTGGCCGCCTCA 62.350 61.111 16.22 16.22 0.00 3.86
1682 1745 1.743995 ACCGGGAGCACGTATTTGC 60.744 57.895 6.32 0.00 43.34 3.68
1779 1842 3.294493 TTGGCAAGAACGGCTGGC 61.294 61.111 0.00 0.00 43.26 4.85
1782 1845 1.039856 AAATGTTGGCAAGAACGGCT 58.960 45.000 0.00 0.00 0.00 5.52
1800 1863 1.588082 GGCGGAGAGGTCGTTGTAA 59.412 57.895 0.00 0.00 0.00 2.41
1806 1869 3.068691 TTGAGGGCGGAGAGGTCG 61.069 66.667 0.00 0.00 0.00 4.79
1823 1886 5.611374 TCTTGCTCAAGTTTAAGTAGTGCT 58.389 37.500 9.20 0.00 39.38 4.40
1824 1887 5.615764 GCTCTTGCTCAAGTTTAAGTAGTGC 60.616 44.000 9.20 0.00 39.38 4.40
1828 1891 4.968259 TGGCTCTTGCTCAAGTTTAAGTA 58.032 39.130 9.20 0.00 39.38 2.24
1835 1898 1.949547 GCTGATGGCTCTTGCTCAAGT 60.950 52.381 9.20 0.00 39.38 3.16
1840 1903 0.033405 AATGGCTGATGGCTCTTGCT 60.033 50.000 0.00 0.00 41.46 3.91
1844 1907 0.463295 CACGAATGGCTGATGGCTCT 60.463 55.000 0.00 0.00 41.46 4.09
1845 1908 1.442526 CCACGAATGGCTGATGGCTC 61.443 60.000 0.00 0.00 39.82 4.70
1866 1929 1.079127 GATGTGTAGTGGCGCACCT 60.079 57.895 10.83 6.50 34.49 4.00
1867 1930 2.106683 GGATGTGTAGTGGCGCACC 61.107 63.158 10.83 0.00 34.49 5.01
1878 1941 1.135094 CCCATAGCTGGAGGATGTGT 58.865 55.000 0.00 0.00 46.37 3.72
1969 2047 1.133823 TCTGATGTTGTGCCACTTGGT 60.134 47.619 0.00 0.00 37.57 3.67
2019 2097 1.128200 CCTCCGGGGACATGAATACA 58.872 55.000 0.37 0.00 37.23 2.29
2022 2100 0.326618 ACTCCTCCGGGGACATGAAT 60.327 55.000 0.37 0.00 39.58 2.57
2090 2168 3.368571 GCACCCAGCAGCCACTTC 61.369 66.667 0.00 0.00 44.79 3.01
2191 2278 1.514443 GCGGACAGTACTGCTCGAC 60.514 63.158 30.09 20.98 38.89 4.20
2264 2351 3.126001 TCTTTCGACTTGAGTTGGCAT 57.874 42.857 0.00 0.00 0.00 4.40
2285 2372 1.228276 TTGTATGTTGCCCACGCCA 60.228 52.632 0.00 0.00 0.00 5.69
2295 2382 3.354948 TCAGGCTGCATCTTGTATGTT 57.645 42.857 10.34 0.00 0.00 2.71
2342 2429 1.899437 AACTGTCATGCCCGGATCGT 61.899 55.000 0.73 0.00 0.00 3.73
2362 2449 2.731968 GCTTCCACCATTGTGCGTATTG 60.732 50.000 0.00 0.00 41.35 1.90
2453 2540 5.335504 CCTTCAGCTTTCATCTTTCTTGGAC 60.336 44.000 0.00 0.00 0.00 4.02
2571 2670 2.821378 TGACACTATTCGGAGTTTCGGA 59.179 45.455 0.00 0.00 30.19 4.55
2573 2672 5.376947 GAATGACACTATTCGGAGTTTCG 57.623 43.478 0.00 0.00 30.19 3.46
2596 2695 1.260544 ATCCTGCCTTTGTGCCTTTC 58.739 50.000 0.00 0.00 0.00 2.62
2601 2700 2.012673 CTCTGTATCCTGCCTTTGTGC 58.987 52.381 0.00 0.00 0.00 4.57
2603 2702 2.906389 TGTCTCTGTATCCTGCCTTTGT 59.094 45.455 0.00 0.00 0.00 2.83
2625 2726 7.223193 TGCTTTGTCTTGTCATCTTTCAAAATG 59.777 33.333 0.00 0.00 0.00 2.32
2732 2836 2.071540 CTGCATCAGACGAAGCTTTCA 58.928 47.619 0.00 0.00 36.79 2.69
2800 2907 6.491062 TGCTCTTCAAAATTCTCATTCTTGGA 59.509 34.615 0.00 0.00 0.00 3.53
2874 2981 2.190578 CCCTCGACTTCCCCATGC 59.809 66.667 0.00 0.00 0.00 4.06
3039 3146 1.197721 GCCATCGTCAACTTGGACAAG 59.802 52.381 10.34 10.34 43.79 3.16
3063 3170 0.397941 TTGGCTGGTCTGAGTTGGAG 59.602 55.000 0.00 0.00 0.00 3.86
3123 3257 7.738437 ATTGTTTTGGACCATGATATCCTTT 57.262 32.000 0.00 0.00 35.86 3.11
3213 3395 5.887035 TGTCTGCATTTCATCAATGTATCCA 59.113 36.000 0.00 0.00 43.95 3.41
3316 3510 5.807909 TGAGGATGAGATGTTTTCATGTGA 58.192 37.500 0.00 0.00 41.05 3.58
3327 3521 8.591940 TCCTTTTGTAGATATGAGGATGAGATG 58.408 37.037 0.00 0.00 0.00 2.90
3518 3774 2.106566 TGAATCTCTGACCTGAGCTCC 58.893 52.381 12.15 0.00 34.29 4.70
3593 3850 1.795286 CGCCTCTCTAATCATTTCCGC 59.205 52.381 0.00 0.00 0.00 5.54
3680 3938 3.316573 AACTGCACCTCTAGCGCCC 62.317 63.158 2.29 0.00 33.85 6.13
3778 4049 8.145767 CCACCATATTACGGTACTCTTCATAAA 58.854 37.037 0.00 0.00 34.02 1.40
3780 4051 6.209986 CCCACCATATTACGGTACTCTTCATA 59.790 42.308 0.00 0.00 34.02 2.15
3793 4064 3.751518 CAAGCCTACCCCACCATATTAC 58.248 50.000 0.00 0.00 0.00 1.89
3794 4065 2.107552 GCAAGCCTACCCCACCATATTA 59.892 50.000 0.00 0.00 0.00 0.98
3806 4077 2.032680 TATTTCACCGGCAAGCCTAC 57.967 50.000 9.73 0.00 0.00 3.18
3810 4081 3.128589 TGAAGATTATTTCACCGGCAAGC 59.871 43.478 0.00 0.00 32.39 4.01
3825 4096 6.183360 GCACTCACAATAAGCTGATGAAGATT 60.183 38.462 0.00 0.00 38.33 2.40
3839 4110 6.878317 AGCTATAGTTTCTGCACTCACAATA 58.122 36.000 0.84 0.00 0.00 1.90
3895 4187 6.670695 ACATAAAGAAAAAGCAACCAGGAT 57.329 33.333 0.00 0.00 0.00 3.24
3922 4215 4.216257 CAGTTGTGTACTCCCCTGAATTTG 59.784 45.833 0.00 0.00 33.85 2.32
3935 4228 5.163693 ACCAAACAAACTAGCAGTTGTGTAC 60.164 40.000 7.57 0.00 38.66 2.90
3940 4237 3.130340 ACCACCAAACAAACTAGCAGTTG 59.870 43.478 2.88 0.00 38.66 3.16
3996 4293 8.896744 CATATGTATGTCCTTGTCAAATCAGTT 58.103 33.333 0.00 0.00 0.00 3.16
3999 4296 7.828717 ACACATATGTATGTCCTTGTCAAATCA 59.171 33.333 8.32 0.00 44.57 2.57
4008 4305 5.102953 AGCACACACATATGTATGTCCTT 57.897 39.130 16.77 3.18 44.57 3.36
4045 4344 8.345565 AGTCAGCTTGTTTTATGTAAGTCAAAG 58.654 33.333 0.00 0.00 0.00 2.77
4104 4403 4.917415 GCAATTGGTACATCAACTGTGAAC 59.083 41.667 7.72 0.00 39.30 3.18
4125 4424 3.389983 ACTACTTGGTACAGAAGTTGGCA 59.610 43.478 13.10 0.00 42.39 4.92
4209 4525 2.288825 TGAATCCTTATTAGCCGGCTCG 60.289 50.000 36.73 16.80 0.00 5.03
4213 4529 4.703897 TCTGTTGAATCCTTATTAGCCGG 58.296 43.478 0.00 0.00 0.00 6.13
4306 4629 6.963322 AGGTAGAGGCTGAGATGTTAATTTT 58.037 36.000 0.00 0.00 0.00 1.82
4324 4647 7.663493 CAGAGATGATAGTACACATGAGGTAGA 59.337 40.741 0.00 0.00 0.00 2.59
4385 4719 6.857777 AGAAGATAATGCTGATGTGCTAAC 57.142 37.500 0.00 0.00 0.00 2.34
4429 4763 5.423015 TGCTAGCTCCTCAACTTTGAATAG 58.577 41.667 17.23 0.00 36.64 1.73
4456 4791 7.426606 TGTATTCCCTGCATAGTAAAGTACA 57.573 36.000 0.00 0.00 0.00 2.90
4473 4808 5.928839 AGTCATTGCATAGTCGATGTATTCC 59.071 40.000 0.00 0.00 37.90 3.01
4482 4817 4.445718 GTCCATACAGTCATTGCATAGTCG 59.554 45.833 0.00 0.00 0.00 4.18
4507 4843 5.352284 TCTGAAGTTCTGTTCAACTGTCTC 58.648 41.667 4.17 0.00 36.69 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.