Multiple sequence alignment - TraesCS5B01G410800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G410800 chr5B 100.000 5365 0 0 1 5365 586356568 586351204 0.000000e+00 9908.0
1 TraesCS5B01G410800 chr5B 87.421 1892 198 29 1088 2955 392269690 392267815 0.000000e+00 2139.0
2 TraesCS5B01G410800 chr5B 85.551 962 109 9 3404 4362 392267023 392266089 0.000000e+00 979.0
3 TraesCS5B01G410800 chr5D 94.715 4541 139 30 244 4746 478470075 478465598 0.000000e+00 6962.0
4 TraesCS5B01G410800 chr5D 87.342 1896 193 30 1088 2955 335235307 335233431 0.000000e+00 2128.0
5 TraesCS5B01G410800 chr5D 85.759 962 107 9 3404 4362 335232614 335231680 0.000000e+00 990.0
6 TraesCS5B01G410800 chr5D 96.491 228 8 0 4916 5143 478465372 478465145 1.410000e-100 377.0
7 TraesCS5B01G410800 chr5D 81.944 360 54 7 1269 1622 294359359 294359005 1.460000e-75 294.0
8 TraesCS5B01G410800 chr5D 100.000 35 0 0 996 1030 335235413 335235379 1.250000e-06 65.8
9 TraesCS5B01G410800 chr5A 92.941 4675 192 47 141 4746 597664614 597660009 0.000000e+00 6678.0
10 TraesCS5B01G410800 chr5A 87.632 1900 192 29 1088 2961 436633200 436631318 0.000000e+00 2167.0
11 TraesCS5B01G410800 chr5A 86.071 962 104 9 3404 4362 436630556 436629622 0.000000e+00 1007.0
12 TraesCS5B01G410800 chr5A 100.000 35 0 0 996 1030 436633310 436633276 1.250000e-06 65.8
13 TraesCS5B01G410800 chr4B 98.131 214 4 0 5152 5365 385556911 385556698 1.820000e-99 374.0
14 TraesCS5B01G410800 chr1B 97.664 214 4 1 5152 5365 643592308 643592520 3.050000e-97 366.0
15 TraesCS5B01G410800 chr3B 96.296 216 6 1 5152 5365 217143977 217143762 2.380000e-93 353.0
16 TraesCS5B01G410800 chr6B 94.714 227 11 1 5140 5365 25821863 25822089 8.550000e-93 351.0
17 TraesCS5B01G410800 chr6B 95.349 215 10 0 5151 5365 710805939 710805725 5.150000e-90 342.0
18 TraesCS5B01G410800 chr6B 94.860 214 7 1 5152 5365 223434224 223434015 1.110000e-86 331.0
19 TraesCS5B01G410800 chr6A 94.884 215 10 1 5152 5365 33393349 33393563 8.610000e-88 335.0
20 TraesCS5B01G410800 chr3D 94.836 213 11 0 5151 5363 44897888 44898100 3.100000e-87 333.0
21 TraesCS5B01G410800 chr7A 94.419 215 12 0 5151 5365 91280128 91279914 1.110000e-86 331.0
22 TraesCS5B01G410800 chr4A 96.875 32 1 0 992 1023 359397205 359397174 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G410800 chr5B 586351204 586356568 5364 True 9908.000000 9908 100.000000 1 5365 1 chr5B.!!$R1 5364
1 TraesCS5B01G410800 chr5B 392266089 392269690 3601 True 1559.000000 2139 86.486000 1088 4362 2 chr5B.!!$R2 3274
2 TraesCS5B01G410800 chr5D 478465145 478470075 4930 True 3669.500000 6962 95.603000 244 5143 2 chr5D.!!$R3 4899
3 TraesCS5B01G410800 chr5D 335231680 335235413 3733 True 1061.266667 2128 91.033667 996 4362 3 chr5D.!!$R2 3366
4 TraesCS5B01G410800 chr5A 597660009 597664614 4605 True 6678.000000 6678 92.941000 141 4746 1 chr5A.!!$R1 4605
5 TraesCS5B01G410800 chr5A 436629622 436633310 3688 True 1079.933333 2167 91.234333 996 4362 3 chr5A.!!$R2 3366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.533085 TTGTTTGTCATCGCCGGTCA 60.533 50.000 1.9 0.00 0.00 4.02 F
86 87 0.589223 GTTTGTCATCGCCGGTCAAA 59.411 50.000 1.9 3.43 0.00 2.69 F
1749 1806 0.543749 GATCCTGAACCAGACCCAGG 59.456 60.000 0.0 0.00 46.64 4.45 F
2220 2289 1.758280 TGTTACAGGTGACCTCGTTGT 59.242 47.619 0.0 0.00 0.00 3.32 F
3519 4054 0.548926 TGAGGTCCCCAACATGGCTA 60.549 55.000 0.0 0.00 35.79 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1801 0.179100 CATCGCTACTGTCACCTGGG 60.179 60.000 0.00 0.0 0.00 4.45 R
1773 1830 1.525923 CAGGCTCCACCCAGATCAG 59.474 63.158 0.00 0.0 40.58 2.90 R
3519 4054 1.359848 CGCTTATCGAAAGCACTGGT 58.640 50.000 22.96 0.0 43.15 4.00 R
4219 4757 0.680061 ACTCCTGTCGTTCTGGAACC 59.320 55.000 7.74 0.0 42.23 3.62 R
4941 5572 0.038159 AGCGTGTTGGACAGTAGAGC 60.038 55.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.968676 AAGGATAATACCAGTGCCACTAA 57.031 39.130 0.00 0.00 0.00 2.24
24 25 6.515512 AAGGATAATACCAGTGCCACTAAT 57.484 37.500 0.00 0.00 0.00 1.73
25 26 6.515512 AGGATAATACCAGTGCCACTAATT 57.484 37.500 0.00 0.94 0.00 1.40
26 27 6.911308 AGGATAATACCAGTGCCACTAATTT 58.089 36.000 0.00 0.00 0.00 1.82
27 28 8.041143 AGGATAATACCAGTGCCACTAATTTA 57.959 34.615 0.00 0.00 0.00 1.40
28 29 7.937394 AGGATAATACCAGTGCCACTAATTTAC 59.063 37.037 0.00 0.00 0.00 2.01
29 30 7.937394 GGATAATACCAGTGCCACTAATTTACT 59.063 37.037 0.00 0.00 0.00 2.24
30 31 8.904099 ATAATACCAGTGCCACTAATTTACTC 57.096 34.615 0.00 0.00 0.00 2.59
31 32 3.951663 ACCAGTGCCACTAATTTACTCC 58.048 45.455 0.00 0.00 0.00 3.85
32 33 3.279434 CCAGTGCCACTAATTTACTCCC 58.721 50.000 0.00 0.00 0.00 4.30
33 34 3.054361 CCAGTGCCACTAATTTACTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
34 35 4.163458 CCAGTGCCACTAATTTACTCCCTA 59.837 45.833 0.00 0.00 0.00 3.53
35 36 5.360591 CAGTGCCACTAATTTACTCCCTAG 58.639 45.833 0.00 0.00 0.00 3.02
36 37 4.409247 AGTGCCACTAATTTACTCCCTAGG 59.591 45.833 0.06 0.06 0.00 3.02
37 38 3.135895 TGCCACTAATTTACTCCCTAGGC 59.864 47.826 2.05 0.00 38.82 3.93
38 39 3.135895 GCCACTAATTTACTCCCTAGGCA 59.864 47.826 2.05 0.00 38.27 4.75
39 40 4.202472 GCCACTAATTTACTCCCTAGGCAT 60.202 45.833 2.05 0.00 38.27 4.40
40 41 5.012768 GCCACTAATTTACTCCCTAGGCATA 59.987 44.000 2.05 0.00 38.27 3.14
41 42 6.296489 GCCACTAATTTACTCCCTAGGCATAT 60.296 42.308 2.05 0.00 38.27 1.78
42 43 7.690256 CCACTAATTTACTCCCTAGGCATATT 58.310 38.462 2.05 0.00 0.00 1.28
43 44 8.822805 CCACTAATTTACTCCCTAGGCATATTA 58.177 37.037 2.05 0.90 0.00 0.98
53 54 7.665974 ACTCCCTAGGCATATTATAAAAAGTGC 59.334 37.037 2.05 0.00 0.00 4.40
54 55 7.522542 TCCCTAGGCATATTATAAAAAGTGCA 58.477 34.615 2.05 0.00 33.24 4.57
55 56 8.001875 TCCCTAGGCATATTATAAAAAGTGCAA 58.998 33.333 2.05 4.34 33.24 4.08
56 57 8.806146 CCCTAGGCATATTATAAAAAGTGCAAT 58.194 33.333 2.05 0.00 33.24 3.56
71 72 8.898983 AAAAGTGCAATTTCATCTTTTGTTTG 57.101 26.923 13.16 0.00 37.09 2.93
72 73 7.614124 AAGTGCAATTTCATCTTTTGTTTGT 57.386 28.000 0.00 0.00 0.00 2.83
73 74 7.237920 AGTGCAATTTCATCTTTTGTTTGTC 57.762 32.000 0.00 0.00 0.00 3.18
74 75 6.817641 AGTGCAATTTCATCTTTTGTTTGTCA 59.182 30.769 0.00 0.00 0.00 3.58
75 76 7.496591 AGTGCAATTTCATCTTTTGTTTGTCAT 59.503 29.630 0.00 0.00 0.00 3.06
76 77 7.795272 GTGCAATTTCATCTTTTGTTTGTCATC 59.205 33.333 0.00 0.00 0.00 2.92
77 78 7.005380 GCAATTTCATCTTTTGTTTGTCATCG 58.995 34.615 0.00 0.00 0.00 3.84
78 79 6.695292 ATTTCATCTTTTGTTTGTCATCGC 57.305 33.333 0.00 0.00 0.00 4.58
79 80 4.159377 TCATCTTTTGTTTGTCATCGCC 57.841 40.909 0.00 0.00 0.00 5.54
80 81 2.679355 TCTTTTGTTTGTCATCGCCG 57.321 45.000 0.00 0.00 0.00 6.46
81 82 1.265635 TCTTTTGTTTGTCATCGCCGG 59.734 47.619 0.00 0.00 0.00 6.13
82 83 1.001815 CTTTTGTTTGTCATCGCCGGT 60.002 47.619 1.90 0.00 0.00 5.28
83 84 0.589223 TTTGTTTGTCATCGCCGGTC 59.411 50.000 1.90 0.00 0.00 4.79
84 85 0.533085 TTGTTTGTCATCGCCGGTCA 60.533 50.000 1.90 0.00 0.00 4.02
85 86 0.533085 TGTTTGTCATCGCCGGTCAA 60.533 50.000 1.90 0.00 0.00 3.18
86 87 0.589223 GTTTGTCATCGCCGGTCAAA 59.411 50.000 1.90 3.43 0.00 2.69
87 88 1.002251 GTTTGTCATCGCCGGTCAAAA 60.002 47.619 1.90 0.00 31.45 2.44
88 89 1.309950 TTGTCATCGCCGGTCAAAAA 58.690 45.000 1.90 0.00 0.00 1.94
108 109 4.983671 AAAAAGCTCCTTTTATAGCGGG 57.016 40.909 3.64 0.00 41.98 6.13
109 110 3.646736 AAAGCTCCTTTTATAGCGGGT 57.353 42.857 0.00 0.00 43.63 5.28
110 111 2.622064 AGCTCCTTTTATAGCGGGTG 57.378 50.000 0.00 0.00 43.63 4.61
111 112 0.945099 GCTCCTTTTATAGCGGGTGC 59.055 55.000 0.00 0.00 43.24 5.01
122 123 3.884350 CGGGTGCGCTAGCTCGTA 61.884 66.667 13.93 0.00 45.42 3.43
123 124 2.728817 GGGTGCGCTAGCTCGTAT 59.271 61.111 13.93 0.00 45.42 3.06
124 125 1.661821 GGGTGCGCTAGCTCGTATG 60.662 63.158 13.93 0.00 45.42 2.39
125 126 2.303676 GGTGCGCTAGCTCGTATGC 61.304 63.158 13.93 8.12 45.42 3.14
126 127 1.299468 GTGCGCTAGCTCGTATGCT 60.299 57.895 13.93 5.77 45.42 3.79
127 128 1.299392 TGCGCTAGCTCGTATGCTG 60.299 57.895 13.93 0.00 43.87 4.41
128 129 2.653022 GCGCTAGCTCGTATGCTGC 61.653 63.158 13.93 1.13 43.87 5.25
129 130 1.007964 CGCTAGCTCGTATGCTGCT 60.008 57.895 13.93 7.30 43.87 4.24
130 131 0.596083 CGCTAGCTCGTATGCTGCTT 60.596 55.000 13.93 0.00 43.87 3.91
131 132 1.576356 GCTAGCTCGTATGCTGCTTT 58.424 50.000 7.70 0.00 43.87 3.51
132 133 1.936547 GCTAGCTCGTATGCTGCTTTT 59.063 47.619 7.70 0.00 43.87 2.27
133 134 2.352960 GCTAGCTCGTATGCTGCTTTTT 59.647 45.455 7.70 0.00 43.87 1.94
168 169 5.959512 TGGGTAGAAAATTTGGAAGGAGAA 58.040 37.500 0.00 0.00 0.00 2.87
172 173 5.459536 AGAAAATTTGGAAGGAGAACAGC 57.540 39.130 0.00 0.00 0.00 4.40
174 175 1.826385 ATTTGGAAGGAGAACAGCCG 58.174 50.000 0.00 0.00 0.00 5.52
203 204 2.554032 CACAAGCCCAGTTTACTCCAAG 59.446 50.000 0.00 0.00 0.00 3.61
237 238 2.046892 CCCACCAAGAGTCCAGCG 60.047 66.667 0.00 0.00 0.00 5.18
304 307 2.156917 GAAACCAAACCCTAACCCTCG 58.843 52.381 0.00 0.00 0.00 4.63
393 405 2.358737 CGCTGAACGCCTCCCTTT 60.359 61.111 0.00 0.00 34.21 3.11
400 412 3.127533 CGCCTCCCTTTTCCGCTG 61.128 66.667 0.00 0.00 0.00 5.18
607 619 1.202842 TCCGTGGGATATCGCAGACTA 60.203 52.381 21.68 6.37 42.51 2.59
608 620 1.068472 CCGTGGGATATCGCAGACTAC 60.068 57.143 21.68 9.53 42.51 2.73
772 789 6.456718 GCTTCTGATGAGCTATTGTTTGTCTC 60.457 42.308 0.00 0.00 0.00 3.36
802 820 3.740631 TGATCCATCTGAATCAGTCCG 57.259 47.619 10.36 0.21 32.61 4.79
828 846 3.815401 GCATGGTTCTGCTATTCCGTTAT 59.185 43.478 0.00 0.00 39.12 1.89
829 847 4.275936 GCATGGTTCTGCTATTCCGTTATT 59.724 41.667 0.00 0.00 39.12 1.40
835 853 6.128117 GGTTCTGCTATTCCGTTATTGTCAAA 60.128 38.462 0.00 0.00 0.00 2.69
836 854 7.302524 GTTCTGCTATTCCGTTATTGTCAAAA 58.697 34.615 0.00 0.00 0.00 2.44
837 855 7.441890 TCTGCTATTCCGTTATTGTCAAAAA 57.558 32.000 0.00 0.00 0.00 1.94
879 897 0.733150 GTTATTCGTTCTGCCAGCCC 59.267 55.000 0.00 0.00 0.00 5.19
908 928 6.621316 TGAATTAAACCGTGTGCTTTCTTA 57.379 33.333 0.00 0.00 0.00 2.10
923 943 7.078228 GTGCTTTCTTATGTAGTTTGTTCTGG 58.922 38.462 0.00 0.00 0.00 3.86
1034 1078 3.263369 TTGGGGACAGGTACTTAGTCA 57.737 47.619 12.51 0.00 44.54 3.41
1072 1118 5.080969 TGGTGCATCCTTACAGTAACTAC 57.919 43.478 0.00 0.00 37.07 2.73
1103 1154 1.428448 TTCGTCCTCGTCAAATGCAG 58.572 50.000 0.00 0.00 38.33 4.41
1136 1187 7.883391 TTTATCTTTGTTCTGTTGTACCCAA 57.117 32.000 0.00 0.00 0.00 4.12
1137 1188 8.472007 TTTATCTTTGTTCTGTTGTACCCAAT 57.528 30.769 0.00 0.00 32.11 3.16
1313 1370 1.270968 CATCGTGTGATTCGCTCGC 59.729 57.895 14.86 0.00 32.20 5.03
1349 1406 4.331168 GCAATGACGAGATGAAAGCTACTT 59.669 41.667 0.00 0.00 22.26 2.24
1388 1445 3.129813 TGCAATGAAGATCAATGACTGGC 59.870 43.478 0.00 0.00 28.94 4.85
1407 1464 3.007940 TGGCTTAGCTTGCAAGAGAGTTA 59.992 43.478 30.39 12.63 0.00 2.24
1408 1465 3.372514 GGCTTAGCTTGCAAGAGAGTTAC 59.627 47.826 30.39 10.15 0.00 2.50
1645 1702 5.016051 TGATCCAGAAGTGCAGAGATAAC 57.984 43.478 0.00 0.00 0.00 1.89
1744 1801 2.859165 TTGTGGATCCTGAACCAGAC 57.141 50.000 14.23 0.08 36.82 3.51
1749 1806 0.543749 GATCCTGAACCAGACCCAGG 59.456 60.000 0.00 0.00 46.64 4.45
1773 1830 5.230306 GTGACAGTAGCGATGACAATAAGAC 59.770 44.000 0.00 0.00 0.00 3.01
2220 2289 1.758280 TGTTACAGGTGACCTCGTTGT 59.242 47.619 0.00 0.00 0.00 3.32
2357 2426 6.846350 CAGAATGTCCAAGATTACCAAGAAC 58.154 40.000 0.00 0.00 0.00 3.01
2725 2794 3.411446 TGAATTTTCAGTGGCTCGTGAT 58.589 40.909 0.00 0.00 32.50 3.06
3399 3934 7.693120 CACTTCTCACACTATCGTTACTCTTAC 59.307 40.741 0.00 0.00 0.00 2.34
3519 4054 0.548926 TGAGGTCCCCAACATGGCTA 60.549 55.000 0.00 0.00 35.79 3.93
3741 4276 6.461110 ACAAGGAGCATATTCTTGAAATGG 57.539 37.500 8.95 0.00 39.97 3.16
3842 4377 4.655963 ACCAGCTCACTACAATGTTTGAT 58.344 39.130 0.00 0.00 0.00 2.57
4100 4635 3.096852 TGGTGATGGTCAAGACTCGTAT 58.903 45.455 0.00 0.00 0.00 3.06
4219 4757 0.872388 GGTGGCTACCAAAACGACAG 59.128 55.000 15.42 0.00 46.71 3.51
4226 4764 1.675552 ACCAAAACGACAGGTTCCAG 58.324 50.000 0.00 0.00 38.08 3.86
4528 5084 1.694696 ACCTGTCAGGAGACTCAAACC 59.305 52.381 26.18 0.00 45.20 3.27
4588 5144 4.260538 CGGTAGCTTTTGATCTGAATCTGC 60.261 45.833 0.00 0.00 32.75 4.26
4601 5158 3.822735 CTGAATCTGCCAGGAACTCAAAA 59.177 43.478 0.00 0.00 34.60 2.44
4663 5220 4.452455 GTGGACACTCCTACATTTGACAAG 59.548 45.833 0.00 0.00 37.46 3.16
4673 5230 8.934023 TCCTACATTTGACAAGAAAGGTTTAT 57.066 30.769 0.00 0.00 32.44 1.40
4731 5288 5.095490 GCTATGTGTTGTGGCTGATTTTAC 58.905 41.667 0.00 0.00 0.00 2.01
4746 5304 6.209129 TGATTTTACTGCGATTTTTGTTGC 57.791 33.333 0.00 0.00 0.00 4.17
4747 5305 4.684193 TTTTACTGCGATTTTTGTTGCG 57.316 36.364 0.00 0.00 0.00 4.85
4748 5306 2.323939 TACTGCGATTTTTGTTGCGG 57.676 45.000 0.00 0.00 40.14 5.69
4749 5307 0.665835 ACTGCGATTTTTGTTGCGGA 59.334 45.000 2.14 0.00 38.11 5.54
4750 5308 1.066303 ACTGCGATTTTTGTTGCGGAA 59.934 42.857 2.14 0.00 38.11 4.30
4751 5309 1.451651 CTGCGATTTTTGTTGCGGAAC 59.548 47.619 13.47 13.47 37.09 3.62
4768 5326 3.344515 GGAACGAAAATCTACAGGGCTT 58.655 45.455 0.00 0.00 0.00 4.35
4775 5333 4.917906 AAATCTACAGGGCTTGAAGTCT 57.082 40.909 2.65 0.00 0.00 3.24
4778 5336 6.567602 AATCTACAGGGCTTGAAGTCTTAT 57.432 37.500 2.65 0.00 0.00 1.73
4791 5349 8.227119 GCTTGAAGTCTTATTTGAGAACTCTTC 58.773 37.037 3.51 0.00 31.78 2.87
4792 5350 7.875316 TGAAGTCTTATTTGAGAACTCTTCG 57.125 36.000 3.51 0.00 32.87 3.79
4793 5351 6.868864 TGAAGTCTTATTTGAGAACTCTTCGG 59.131 38.462 3.51 0.00 32.87 4.30
4797 5355 6.424207 GTCTTATTTGAGAACTCTTCGGTTGT 59.576 38.462 3.51 0.00 34.02 3.32
4798 5356 7.597743 GTCTTATTTGAGAACTCTTCGGTTGTA 59.402 37.037 3.51 0.00 34.02 2.41
4810 5370 7.844009 ACTCTTCGGTTGTATACTTCCAATTA 58.156 34.615 4.17 0.00 0.00 1.40
4811 5371 8.483758 ACTCTTCGGTTGTATACTTCCAATTAT 58.516 33.333 4.17 0.00 0.00 1.28
4823 5383 8.870075 ATACTTCCAATTATCATAAGAAGCCC 57.130 34.615 5.27 0.00 35.28 5.19
4824 5384 6.071320 ACTTCCAATTATCATAAGAAGCCCC 58.929 40.000 5.27 0.00 35.28 5.80
4825 5385 4.998051 TCCAATTATCATAAGAAGCCCCC 58.002 43.478 0.00 0.00 0.00 5.40
4826 5386 3.758554 CCAATTATCATAAGAAGCCCCCG 59.241 47.826 0.00 0.00 0.00 5.73
4839 5399 3.814268 CCCCGCACGCTGAAATGG 61.814 66.667 0.00 0.00 0.00 3.16
4841 5401 2.331893 CCCGCACGCTGAAATGGAA 61.332 57.895 0.00 0.00 0.00 3.53
4842 5402 1.154225 CCGCACGCTGAAATGGAAC 60.154 57.895 0.00 0.00 0.00 3.62
4844 5404 1.866237 GCACGCTGAAATGGAACGA 59.134 52.632 0.00 0.00 0.00 3.85
4848 5408 2.973224 CACGCTGAAATGGAACGAAAAG 59.027 45.455 0.00 0.00 0.00 2.27
4849 5409 1.978782 CGCTGAAATGGAACGAAAAGC 59.021 47.619 0.00 0.00 0.00 3.51
4851 5411 3.120338 CGCTGAAATGGAACGAAAAGCTA 60.120 43.478 0.00 0.00 0.00 3.32
4853 5413 4.083271 GCTGAAATGGAACGAAAAGCTACT 60.083 41.667 0.00 0.00 0.00 2.57
4854 5414 5.607119 TGAAATGGAACGAAAAGCTACTC 57.393 39.130 0.00 0.00 0.00 2.59
4880 5492 1.972198 CACCGCCAGTGTCCTAGAA 59.028 57.895 0.00 0.00 41.93 2.10
4886 5499 2.294791 CGCCAGTGTCCTAGAATCCTAG 59.705 54.545 0.00 0.00 41.58 3.02
4888 5501 4.471548 GCCAGTGTCCTAGAATCCTAGTA 58.528 47.826 0.00 0.00 40.57 1.82
4899 5512 6.718454 CCTAGAATCCTAGTATTGGTACCGAA 59.282 42.308 5.77 2.48 40.57 4.30
4903 5516 4.858850 TCCTAGTATTGGTACCGAACTGA 58.141 43.478 18.82 9.31 0.00 3.41
4904 5517 5.263599 TCCTAGTATTGGTACCGAACTGAA 58.736 41.667 18.82 3.65 0.00 3.02
4911 5524 2.435069 TGGTACCGAACTGAAACCTTGA 59.565 45.455 7.57 0.00 0.00 3.02
4912 5525 3.071892 TGGTACCGAACTGAAACCTTGAT 59.928 43.478 7.57 0.00 0.00 2.57
4913 5526 3.683340 GGTACCGAACTGAAACCTTGATC 59.317 47.826 0.00 0.00 0.00 2.92
4914 5527 3.771577 ACCGAACTGAAACCTTGATCT 57.228 42.857 0.00 0.00 0.00 2.75
4928 5559 7.761038 AACCTTGATCTTTTAGGTCGATTTT 57.239 32.000 8.98 0.00 41.33 1.82
4939 5570 4.440839 AGGTCGATTTTTGATTTCCAGC 57.559 40.909 0.00 0.00 0.00 4.85
4941 5572 3.171277 GTCGATTTTTGATTTCCAGCGG 58.829 45.455 0.00 0.00 0.00 5.52
4944 5575 2.723124 TTTTTGATTTCCAGCGGCTC 57.277 45.000 0.00 0.00 0.00 4.70
4970 5601 1.011968 CCAACACGCTGCGCTAGTAA 61.012 55.000 23.51 0.00 0.00 2.24
5082 5713 1.754803 CCTGAGCCGTTCCTATACACA 59.245 52.381 0.00 0.00 0.00 3.72
5085 5716 4.547532 CTGAGCCGTTCCTATACACATAC 58.452 47.826 0.00 0.00 0.00 2.39
5146 5777 4.240175 GGAAGCAGGTTCCGTACTATAG 57.760 50.000 15.65 0.00 45.69 1.31
5147 5778 3.635836 GGAAGCAGGTTCCGTACTATAGT 59.364 47.826 15.65 10.87 45.69 2.12
5148 5779 4.099113 GGAAGCAGGTTCCGTACTATAGTT 59.901 45.833 15.65 0.00 45.69 2.24
5149 5780 4.915158 AGCAGGTTCCGTACTATAGTTC 57.085 45.455 11.40 4.97 0.00 3.01
5150 5781 4.534797 AGCAGGTTCCGTACTATAGTTCT 58.465 43.478 11.40 0.00 0.00 3.01
5151 5782 4.954826 AGCAGGTTCCGTACTATAGTTCTT 59.045 41.667 11.40 0.00 0.00 2.52
5152 5783 5.041940 GCAGGTTCCGTACTATAGTTCTTG 58.958 45.833 11.40 0.52 0.00 3.02
5153 5784 5.393896 GCAGGTTCCGTACTATAGTTCTTGT 60.394 44.000 11.40 0.00 0.00 3.16
5154 5785 6.628185 CAGGTTCCGTACTATAGTTCTTGTT 58.372 40.000 11.40 0.00 0.00 2.83
5155 5786 7.095270 CAGGTTCCGTACTATAGTTCTTGTTT 58.905 38.462 11.40 0.00 0.00 2.83
5156 5787 7.601508 CAGGTTCCGTACTATAGTTCTTGTTTT 59.398 37.037 11.40 0.00 0.00 2.43
5157 5788 7.601508 AGGTTCCGTACTATAGTTCTTGTTTTG 59.398 37.037 11.40 0.00 0.00 2.44
5158 5789 7.599998 GGTTCCGTACTATAGTTCTTGTTTTGA 59.400 37.037 11.40 0.00 0.00 2.69
5159 5790 8.981647 GTTCCGTACTATAGTTCTTGTTTTGAA 58.018 33.333 11.40 0.00 0.00 2.69
5160 5791 9.715121 TTCCGTACTATAGTTCTTGTTTTGAAT 57.285 29.630 11.40 0.00 0.00 2.57
5161 5792 9.362539 TCCGTACTATAGTTCTTGTTTTGAATC 57.637 33.333 11.40 0.00 0.00 2.52
5162 5793 9.146984 CCGTACTATAGTTCTTGTTTTGAATCA 57.853 33.333 11.40 0.00 0.00 2.57
5183 5814 6.668541 TCAGAATGATCGAATCCTTTCAAC 57.331 37.500 0.00 0.00 42.56 3.18
5184 5815 5.291858 TCAGAATGATCGAATCCTTTCAACG 59.708 40.000 0.00 0.00 42.56 4.10
5185 5816 5.291858 CAGAATGATCGAATCCTTTCAACGA 59.708 40.000 0.00 0.00 39.69 3.85
5186 5817 6.018425 CAGAATGATCGAATCCTTTCAACGAT 60.018 38.462 0.00 0.00 44.35 3.73
5187 5818 5.663795 ATGATCGAATCCTTTCAACGATG 57.336 39.130 0.00 0.00 42.33 3.84
5188 5819 3.871006 TGATCGAATCCTTTCAACGATGG 59.129 43.478 0.00 0.00 42.33 3.51
5189 5820 3.328382 TCGAATCCTTTCAACGATGGT 57.672 42.857 0.00 0.00 0.00 3.55
5190 5821 3.670625 TCGAATCCTTTCAACGATGGTT 58.329 40.909 0.00 0.00 36.63 3.67
5191 5822 4.823157 TCGAATCCTTTCAACGATGGTTA 58.177 39.130 0.00 0.00 33.72 2.85
5192 5823 4.628333 TCGAATCCTTTCAACGATGGTTAC 59.372 41.667 0.00 0.00 33.72 2.50
5193 5824 4.390603 CGAATCCTTTCAACGATGGTTACA 59.609 41.667 0.00 0.00 33.72 2.41
5194 5825 5.064707 CGAATCCTTTCAACGATGGTTACAT 59.935 40.000 0.00 0.00 40.85 2.29
5195 5826 5.818136 ATCCTTTCAACGATGGTTACATG 57.182 39.130 0.00 0.00 37.47 3.21
5196 5827 4.647611 TCCTTTCAACGATGGTTACATGT 58.352 39.130 2.69 2.69 37.47 3.21
5197 5828 4.693566 TCCTTTCAACGATGGTTACATGTC 59.306 41.667 0.00 0.00 37.47 3.06
5198 5829 4.142687 CCTTTCAACGATGGTTACATGTCC 60.143 45.833 0.00 0.00 37.47 4.02
5199 5830 2.980568 TCAACGATGGTTACATGTCCC 58.019 47.619 0.00 4.37 37.47 4.46
5200 5831 2.014128 CAACGATGGTTACATGTCCCC 58.986 52.381 0.00 3.95 37.47 4.81
5201 5832 1.580059 ACGATGGTTACATGTCCCCT 58.420 50.000 0.00 0.00 37.47 4.79
5202 5833 1.913419 ACGATGGTTACATGTCCCCTT 59.087 47.619 0.00 1.43 37.47 3.95
5203 5834 2.307686 ACGATGGTTACATGTCCCCTTT 59.692 45.455 0.00 0.00 37.47 3.11
5204 5835 3.245122 ACGATGGTTACATGTCCCCTTTT 60.245 43.478 0.00 0.00 37.47 2.27
5205 5836 4.019141 ACGATGGTTACATGTCCCCTTTTA 60.019 41.667 0.00 0.00 37.47 1.52
5206 5837 5.130350 CGATGGTTACATGTCCCCTTTTAT 58.870 41.667 0.00 0.00 37.47 1.40
5207 5838 6.126710 ACGATGGTTACATGTCCCCTTTTATA 60.127 38.462 0.00 0.00 37.47 0.98
5208 5839 6.940298 CGATGGTTACATGTCCCCTTTTATAT 59.060 38.462 0.00 0.00 37.47 0.86
5209 5840 7.119262 CGATGGTTACATGTCCCCTTTTATATC 59.881 40.741 0.00 1.11 37.47 1.63
5210 5841 7.460214 TGGTTACATGTCCCCTTTTATATCT 57.540 36.000 0.00 0.00 0.00 1.98
5211 5842 7.514721 TGGTTACATGTCCCCTTTTATATCTC 58.485 38.462 0.00 0.00 0.00 2.75
5212 5843 7.349859 TGGTTACATGTCCCCTTTTATATCTCT 59.650 37.037 0.00 0.00 0.00 3.10
5213 5844 7.878644 GGTTACATGTCCCCTTTTATATCTCTC 59.121 40.741 0.00 0.00 0.00 3.20
5214 5845 6.102897 ACATGTCCCCTTTTATATCTCTCG 57.897 41.667 0.00 0.00 0.00 4.04
5215 5846 5.839063 ACATGTCCCCTTTTATATCTCTCGA 59.161 40.000 0.00 0.00 0.00 4.04
5216 5847 6.326583 ACATGTCCCCTTTTATATCTCTCGAA 59.673 38.462 0.00 0.00 0.00 3.71
5217 5848 6.406692 TGTCCCCTTTTATATCTCTCGAAG 57.593 41.667 0.00 0.00 0.00 3.79
5218 5849 5.304614 TGTCCCCTTTTATATCTCTCGAAGG 59.695 44.000 0.00 0.00 34.76 3.46
5222 5853 6.406692 CCTTTTATATCTCTCGAAGGGACA 57.593 41.667 0.00 0.00 32.08 4.02
5223 5854 6.217294 CCTTTTATATCTCTCGAAGGGACAC 58.783 44.000 0.00 0.00 32.08 3.67
5224 5855 5.434352 TTTATATCTCTCGAAGGGACACG 57.566 43.478 0.00 0.00 0.00 4.49
5225 5856 2.704464 TATCTCTCGAAGGGACACGA 57.296 50.000 0.00 0.00 37.72 4.35
5226 5857 1.096416 ATCTCTCGAAGGGACACGAC 58.904 55.000 0.00 0.00 35.89 4.34
5227 5858 1.134901 CTCTCGAAGGGACACGACG 59.865 63.158 0.00 0.00 35.89 5.12
5228 5859 1.296755 CTCTCGAAGGGACACGACGA 61.297 60.000 0.00 0.00 35.89 4.20
5229 5860 0.675837 TCTCGAAGGGACACGACGAT 60.676 55.000 0.00 0.00 35.89 3.73
5230 5861 0.248134 CTCGAAGGGACACGACGATC 60.248 60.000 0.00 0.00 35.89 3.69
5231 5862 1.226603 CGAAGGGACACGACGATCC 60.227 63.158 0.00 8.14 33.01 3.36
5249 5880 3.441290 CTCGAGGAGGCGTCGGTT 61.441 66.667 3.91 0.00 41.23 4.44
5250 5881 3.398353 CTCGAGGAGGCGTCGGTTC 62.398 68.421 3.91 0.00 41.23 3.62
5251 5882 4.493747 CGAGGAGGCGTCGGTTCC 62.494 72.222 0.00 0.00 37.97 3.62
5252 5883 3.379445 GAGGAGGCGTCGGTTCCA 61.379 66.667 0.00 0.00 33.32 3.53
5253 5884 3.358076 GAGGAGGCGTCGGTTCCAG 62.358 68.421 0.00 0.00 33.32 3.86
5254 5885 4.452733 GGAGGCGTCGGTTCCAGG 62.453 72.222 0.00 0.00 0.00 4.45
5255 5886 3.379445 GAGGCGTCGGTTCCAGGA 61.379 66.667 0.00 0.00 0.00 3.86
5256 5887 3.358076 GAGGCGTCGGTTCCAGGAG 62.358 68.421 0.00 0.00 0.00 3.69
5257 5888 3.379445 GGCGTCGGTTCCAGGAGA 61.379 66.667 0.00 0.00 0.00 3.71
5258 5889 2.722201 GGCGTCGGTTCCAGGAGAT 61.722 63.158 0.00 0.00 0.00 2.75
5259 5890 1.227002 GCGTCGGTTCCAGGAGATC 60.227 63.158 0.00 0.00 0.00 2.75
5260 5891 1.064296 CGTCGGTTCCAGGAGATCG 59.936 63.158 0.00 0.00 0.00 3.69
5261 5892 1.374343 CGTCGGTTCCAGGAGATCGA 61.374 60.000 6.73 6.73 0.00 3.59
5262 5893 0.815734 GTCGGTTCCAGGAGATCGAA 59.184 55.000 11.01 0.00 34.03 3.71
5263 5894 1.103803 TCGGTTCCAGGAGATCGAAG 58.896 55.000 7.99 0.00 30.77 3.79
5264 5895 0.103208 CGGTTCCAGGAGATCGAAGG 59.897 60.000 0.00 0.00 0.00 3.46
5265 5896 0.466124 GGTTCCAGGAGATCGAAGGG 59.534 60.000 0.00 0.00 0.00 3.95
5266 5897 1.486211 GTTCCAGGAGATCGAAGGGA 58.514 55.000 0.00 0.00 0.00 4.20
5267 5898 1.410882 GTTCCAGGAGATCGAAGGGAG 59.589 57.143 0.00 0.00 0.00 4.30
5268 5899 0.105964 TCCAGGAGATCGAAGGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
5269 5900 1.745264 CAGGAGATCGAAGGGAGGC 59.255 63.158 0.00 0.00 0.00 4.70
5270 5901 1.830408 AGGAGATCGAAGGGAGGCG 60.830 63.158 0.00 0.00 0.00 5.52
5271 5902 2.128507 GGAGATCGAAGGGAGGCGT 61.129 63.158 0.00 0.00 0.00 5.68
5272 5903 1.360911 GAGATCGAAGGGAGGCGTC 59.639 63.158 0.00 0.00 0.00 5.19
5273 5904 2.026301 GATCGAAGGGAGGCGTCG 59.974 66.667 0.00 0.00 36.12 5.12
5274 5905 3.486252 GATCGAAGGGAGGCGTCGG 62.486 68.421 0.00 0.00 35.51 4.79
5276 5907 4.065281 CGAAGGGAGGCGTCGGTT 62.065 66.667 0.00 0.00 0.00 4.44
5277 5908 2.434359 GAAGGGAGGCGTCGGTTG 60.434 66.667 0.00 0.00 0.00 3.77
5278 5909 4.699522 AAGGGAGGCGTCGGTTGC 62.700 66.667 0.00 0.00 0.00 4.17
5286 5917 2.968156 CGTCGGTTGCGGGACAAA 60.968 61.111 0.00 0.00 40.82 2.83
5287 5918 2.635338 GTCGGTTGCGGGACAAAC 59.365 61.111 0.00 0.00 42.97 2.93
5288 5919 2.592287 TCGGTTGCGGGACAAACC 60.592 61.111 0.00 0.00 43.54 3.27
5296 5927 2.635338 GGGACAAACCGCAACGAC 59.365 61.111 0.00 0.00 40.11 4.34
5297 5928 2.247267 GGACAAACCGCAACGACG 59.753 61.111 0.00 0.00 0.00 5.12
5305 5936 4.676586 CGCAACGACGGTTTGGGC 62.677 66.667 0.00 0.00 32.98 5.36
5306 5937 3.587933 GCAACGACGGTTTGGGCA 61.588 61.111 0.00 0.00 32.98 5.36
5307 5938 3.111939 CAACGACGGTTTGGGCAA 58.888 55.556 0.00 0.00 32.98 4.52
5308 5939 1.008995 CAACGACGGTTTGGGCAAG 60.009 57.895 0.00 0.00 32.98 4.01
5309 5940 2.190841 AACGACGGTTTGGGCAAGG 61.191 57.895 0.00 0.00 30.42 3.61
5310 5941 3.361977 CGACGGTTTGGGCAAGGG 61.362 66.667 0.00 0.00 0.00 3.95
5311 5942 2.989253 GACGGTTTGGGCAAGGGG 60.989 66.667 0.00 0.00 0.00 4.79
5312 5943 3.501040 GACGGTTTGGGCAAGGGGA 62.501 63.158 0.00 0.00 0.00 4.81
5313 5944 2.676471 CGGTTTGGGCAAGGGGAG 60.676 66.667 0.00 0.00 0.00 4.30
5314 5945 2.851045 GGTTTGGGCAAGGGGAGA 59.149 61.111 0.00 0.00 0.00 3.71
5315 5946 1.388133 GGTTTGGGCAAGGGGAGAT 59.612 57.895 0.00 0.00 0.00 2.75
5316 5947 0.252239 GGTTTGGGCAAGGGGAGATT 60.252 55.000 0.00 0.00 0.00 2.40
5317 5948 1.644509 GTTTGGGCAAGGGGAGATTT 58.355 50.000 0.00 0.00 0.00 2.17
5318 5949 1.977854 GTTTGGGCAAGGGGAGATTTT 59.022 47.619 0.00 0.00 0.00 1.82
5319 5950 2.371841 GTTTGGGCAAGGGGAGATTTTT 59.628 45.455 0.00 0.00 0.00 1.94
5320 5951 1.937191 TGGGCAAGGGGAGATTTTTC 58.063 50.000 0.00 0.00 0.00 2.29
5321 5952 1.195115 GGGCAAGGGGAGATTTTTCC 58.805 55.000 0.00 0.00 36.46 3.13
5352 5983 7.476540 ACAGAATTATTTTTAACACTCCCCC 57.523 36.000 0.00 0.00 0.00 5.40
5353 5984 7.246027 ACAGAATTATTTTTAACACTCCCCCT 58.754 34.615 0.00 0.00 0.00 4.79
5354 5985 8.395605 ACAGAATTATTTTTAACACTCCCCCTA 58.604 33.333 0.00 0.00 0.00 3.53
5355 5986 9.250246 CAGAATTATTTTTAACACTCCCCCTAA 57.750 33.333 0.00 0.00 0.00 2.69
5360 5991 9.910267 TTATTTTTAACACTCCCCCTAATCTAC 57.090 33.333 0.00 0.00 0.00 2.59
5361 5992 5.603170 TTTAACACTCCCCCTAATCTACG 57.397 43.478 0.00 0.00 0.00 3.51
5362 5993 1.411041 ACACTCCCCCTAATCTACGC 58.589 55.000 0.00 0.00 0.00 4.42
5363 5994 1.063114 ACACTCCCCCTAATCTACGCT 60.063 52.381 0.00 0.00 0.00 5.07
5364 5995 2.040178 CACTCCCCCTAATCTACGCTT 58.960 52.381 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.626999 ATTAGTGGCACTGGTATTATCCTTA 57.373 36.000 29.65 1.81 0.00 2.69
1 2 5.968676 TTAGTGGCACTGGTATTATCCTT 57.031 39.130 29.65 1.20 0.00 3.36
2 3 6.515512 AATTAGTGGCACTGGTATTATCCT 57.484 37.500 29.65 1.41 0.00 3.24
3 4 7.937394 AGTAAATTAGTGGCACTGGTATTATCC 59.063 37.037 29.65 15.04 0.00 2.59
5 6 7.937394 GGAGTAAATTAGTGGCACTGGTATTAT 59.063 37.037 29.65 11.01 0.00 1.28
6 7 7.277396 GGAGTAAATTAGTGGCACTGGTATTA 58.723 38.462 29.65 18.46 0.00 0.98
7 8 6.120220 GGAGTAAATTAGTGGCACTGGTATT 58.880 40.000 29.65 20.82 0.00 1.89
8 9 5.397559 GGGAGTAAATTAGTGGCACTGGTAT 60.398 44.000 29.65 16.53 0.00 2.73
9 10 4.080751 GGGAGTAAATTAGTGGCACTGGTA 60.081 45.833 29.65 15.00 0.00 3.25
10 11 3.308188 GGGAGTAAATTAGTGGCACTGGT 60.308 47.826 29.65 15.01 0.00 4.00
11 12 3.054361 AGGGAGTAAATTAGTGGCACTGG 60.054 47.826 29.65 0.00 0.00 4.00
12 13 4.222124 AGGGAGTAAATTAGTGGCACTG 57.778 45.455 29.65 0.00 0.00 3.66
13 14 4.409247 CCTAGGGAGTAAATTAGTGGCACT 59.591 45.833 25.34 25.34 0.00 4.40
14 15 4.704965 CCTAGGGAGTAAATTAGTGGCAC 58.295 47.826 10.29 10.29 0.00 5.01
15 16 3.135895 GCCTAGGGAGTAAATTAGTGGCA 59.864 47.826 11.72 0.00 36.91 4.92
16 17 3.135895 TGCCTAGGGAGTAAATTAGTGGC 59.864 47.826 11.72 0.00 37.38 5.01
17 18 5.568620 ATGCCTAGGGAGTAAATTAGTGG 57.431 43.478 11.72 0.00 0.00 4.00
27 28 7.665974 GCACTTTTTATAATATGCCTAGGGAGT 59.334 37.037 11.72 0.00 0.00 3.85
28 29 7.665559 TGCACTTTTTATAATATGCCTAGGGAG 59.334 37.037 11.72 0.00 32.02 4.30
29 30 7.522542 TGCACTTTTTATAATATGCCTAGGGA 58.477 34.615 11.72 8.58 32.02 4.20
30 31 7.759489 TGCACTTTTTATAATATGCCTAGGG 57.241 36.000 11.72 0.00 32.02 3.53
45 46 9.344309 CAAACAAAAGATGAAATTGCACTTTTT 57.656 25.926 17.27 11.54 38.26 1.94
46 47 8.513774 ACAAACAAAAGATGAAATTGCACTTTT 58.486 25.926 15.43 15.43 40.02 2.27
47 48 8.042944 ACAAACAAAAGATGAAATTGCACTTT 57.957 26.923 1.08 1.08 33.18 2.66
48 49 7.333921 TGACAAACAAAAGATGAAATTGCACTT 59.666 29.630 0.00 0.00 0.00 3.16
49 50 6.817641 TGACAAACAAAAGATGAAATTGCACT 59.182 30.769 0.00 0.00 0.00 4.40
50 51 7.002816 TGACAAACAAAAGATGAAATTGCAC 57.997 32.000 0.00 0.00 0.00 4.57
51 52 7.306690 CGATGACAAACAAAAGATGAAATTGCA 60.307 33.333 0.00 0.00 0.00 4.08
52 53 7.005380 CGATGACAAACAAAAGATGAAATTGC 58.995 34.615 0.00 0.00 0.00 3.56
53 54 7.005380 GCGATGACAAACAAAAGATGAAATTG 58.995 34.615 0.00 0.00 0.00 2.32
54 55 6.146021 GGCGATGACAAACAAAAGATGAAATT 59.854 34.615 0.00 0.00 0.00 1.82
55 56 5.634859 GGCGATGACAAACAAAAGATGAAAT 59.365 36.000 0.00 0.00 0.00 2.17
56 57 4.981674 GGCGATGACAAACAAAAGATGAAA 59.018 37.500 0.00 0.00 0.00 2.69
57 58 4.545610 GGCGATGACAAACAAAAGATGAA 58.454 39.130 0.00 0.00 0.00 2.57
58 59 3.364864 CGGCGATGACAAACAAAAGATGA 60.365 43.478 0.00 0.00 0.00 2.92
59 60 2.910482 CGGCGATGACAAACAAAAGATG 59.090 45.455 0.00 0.00 0.00 2.90
60 61 2.095263 CCGGCGATGACAAACAAAAGAT 60.095 45.455 9.30 0.00 0.00 2.40
61 62 1.265635 CCGGCGATGACAAACAAAAGA 59.734 47.619 9.30 0.00 0.00 2.52
62 63 1.001815 ACCGGCGATGACAAACAAAAG 60.002 47.619 9.30 0.00 0.00 2.27
63 64 1.002251 GACCGGCGATGACAAACAAAA 60.002 47.619 9.30 0.00 0.00 2.44
64 65 0.589223 GACCGGCGATGACAAACAAA 59.411 50.000 9.30 0.00 0.00 2.83
65 66 0.533085 TGACCGGCGATGACAAACAA 60.533 50.000 9.30 0.00 0.00 2.83
66 67 0.533085 TTGACCGGCGATGACAAACA 60.533 50.000 9.30 0.00 0.00 2.83
67 68 0.589223 TTTGACCGGCGATGACAAAC 59.411 50.000 9.30 0.00 0.00 2.93
68 69 1.309950 TTTTGACCGGCGATGACAAA 58.690 45.000 9.30 9.05 0.00 2.83
69 70 1.309950 TTTTTGACCGGCGATGACAA 58.690 45.000 9.30 2.35 0.00 3.18
70 71 3.008141 TTTTTGACCGGCGATGACA 57.992 47.368 9.30 0.00 0.00 3.58
87 88 4.157840 CACCCGCTATAAAAGGAGCTTTTT 59.842 41.667 0.00 1.95 40.23 1.94
88 89 3.694566 CACCCGCTATAAAAGGAGCTTTT 59.305 43.478 0.00 0.00 44.46 2.27
89 90 3.279434 CACCCGCTATAAAAGGAGCTTT 58.721 45.455 0.00 0.00 36.50 3.51
90 91 2.919228 CACCCGCTATAAAAGGAGCTT 58.081 47.619 0.00 0.00 36.50 3.74
91 92 1.475213 GCACCCGCTATAAAAGGAGCT 60.475 52.381 0.00 0.00 36.50 4.09
92 93 0.945099 GCACCCGCTATAAAAGGAGC 59.055 55.000 0.00 0.00 35.24 4.70
93 94 1.217882 CGCACCCGCTATAAAAGGAG 58.782 55.000 0.00 0.00 35.30 3.69
94 95 3.372795 CGCACCCGCTATAAAAGGA 57.627 52.632 0.00 0.00 35.30 3.36
105 106 3.195591 ATACGAGCTAGCGCACCCG 62.196 63.158 18.87 15.06 39.10 5.28
106 107 1.661821 CATACGAGCTAGCGCACCC 60.662 63.158 18.87 0.00 39.10 4.61
107 108 2.303676 GCATACGAGCTAGCGCACC 61.304 63.158 18.87 4.53 39.10 5.01
108 109 1.299468 AGCATACGAGCTAGCGCAC 60.299 57.895 18.87 9.10 44.50 5.34
109 110 1.299392 CAGCATACGAGCTAGCGCA 60.299 57.895 18.87 0.00 44.54 6.09
110 111 2.653022 GCAGCATACGAGCTAGCGC 61.653 63.158 9.55 9.06 44.54 5.92
111 112 0.596083 AAGCAGCATACGAGCTAGCG 60.596 55.000 9.55 0.00 44.54 4.26
112 113 1.576356 AAAGCAGCATACGAGCTAGC 58.424 50.000 6.62 6.62 44.54 3.42
137 138 3.942130 AATTTTCTACCCAGCAACTGC 57.058 42.857 0.00 0.00 42.49 4.40
138 139 4.280677 TCCAAATTTTCTACCCAGCAACTG 59.719 41.667 0.00 0.00 0.00 3.16
139 140 4.479158 TCCAAATTTTCTACCCAGCAACT 58.521 39.130 0.00 0.00 0.00 3.16
140 141 4.864704 TCCAAATTTTCTACCCAGCAAC 57.135 40.909 0.00 0.00 0.00 4.17
141 142 4.283212 CCTTCCAAATTTTCTACCCAGCAA 59.717 41.667 0.00 0.00 0.00 3.91
142 143 3.831911 CCTTCCAAATTTTCTACCCAGCA 59.168 43.478 0.00 0.00 0.00 4.41
143 144 4.086457 TCCTTCCAAATTTTCTACCCAGC 58.914 43.478 0.00 0.00 0.00 4.85
144 145 5.570320 TCTCCTTCCAAATTTTCTACCCAG 58.430 41.667 0.00 0.00 0.00 4.45
156 157 0.889186 GCGGCTGTTCTCCTTCCAAA 60.889 55.000 0.00 0.00 0.00 3.28
183 184 2.863809 CTTGGAGTAAACTGGGCTTGT 58.136 47.619 0.00 0.00 0.00 3.16
203 204 3.573491 GCTGGGTCGGCGTATTGC 61.573 66.667 6.85 2.82 45.38 3.56
223 224 3.303135 TCGCGCTGGACTCTTGGT 61.303 61.111 5.56 0.00 0.00 3.67
273 275 2.114056 GTTTGGTTTCGGAAGCGTTTC 58.886 47.619 3.02 3.02 36.06 2.78
304 307 0.537653 GGAAGGACTGTAGAGGTGGC 59.462 60.000 0.00 0.00 0.00 5.01
393 405 3.849951 GGCTCGGATCCAGCGGAA 61.850 66.667 22.08 0.00 37.81 4.30
607 619 1.010350 CGATACGTCGGCTAAGCGT 60.010 57.895 0.00 0.00 44.00 5.07
608 620 3.811328 CGATACGTCGGCTAAGCG 58.189 61.111 0.00 0.00 44.00 4.68
644 659 1.328680 CAACTGGATTGAGGAATCGCG 59.671 52.381 0.00 0.00 41.23 5.87
772 789 4.063998 TCAGATGGATCAATCAACCTCG 57.936 45.455 12.74 0.00 0.00 4.63
835 853 8.157476 ACTTATATCCTCAGAACACACAGTTTT 58.843 33.333 0.00 0.00 41.51 2.43
836 854 7.680730 ACTTATATCCTCAGAACACACAGTTT 58.319 34.615 0.00 0.00 41.51 2.66
837 855 7.246171 ACTTATATCCTCAGAACACACAGTT 57.754 36.000 0.00 0.00 44.93 3.16
838 856 6.859112 ACTTATATCCTCAGAACACACAGT 57.141 37.500 0.00 0.00 0.00 3.55
879 897 3.293262 CACACGGTTTAATTCAACCACG 58.707 45.455 19.12 12.24 45.97 4.94
886 904 7.081976 ACATAAGAAAGCACACGGTTTAATTC 58.918 34.615 0.00 0.00 42.73 2.17
1072 1118 8.570096 TTGACGAGGACGAATTTTATACATAG 57.430 34.615 0.00 0.00 42.66 2.23
1083 1129 2.002586 CTGCATTTGACGAGGACGAAT 58.997 47.619 0.00 0.00 42.66 3.34
1129 1180 5.780793 ACTGTCTCCCTGATATATTGGGTAC 59.219 44.000 18.54 17.42 41.58 3.34
1136 1187 5.329399 GGAGTCACTGTCTCCCTGATATAT 58.671 45.833 10.39 0.00 43.90 0.86
1137 1188 4.730966 GGAGTCACTGTCTCCCTGATATA 58.269 47.826 10.39 0.00 43.90 0.86
1313 1370 1.135859 GTCATTGCGCTTGTCCTTCAG 60.136 52.381 9.73 0.00 0.00 3.02
1349 1406 1.815003 CATTGCGCATCTGGTCGGA 60.815 57.895 12.75 0.00 0.00 4.55
1388 1445 4.324936 GTCGTAACTCTCTTGCAAGCTAAG 59.675 45.833 21.99 18.56 0.00 2.18
1645 1702 4.645535 TGTCATCTTCAAAACTCTCTGGG 58.354 43.478 0.00 0.00 0.00 4.45
1744 1801 0.179100 CATCGCTACTGTCACCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
1749 1806 5.230306 GTCTTATTGTCATCGCTACTGTCAC 59.770 44.000 0.00 0.00 0.00 3.67
1773 1830 1.525923 CAGGCTCCACCCAGATCAG 59.474 63.158 0.00 0.00 40.58 2.90
2149 2218 4.163427 TCTGAGTTTCCTTCTCATCAGGT 58.837 43.478 0.00 0.00 40.46 4.00
2220 2289 5.305386 TCAGAGTCAATTCTCTCCAGAAACA 59.695 40.000 0.00 0.00 42.14 2.83
2357 2426 2.484264 CAGCCTTAAAGTTCTGAACCCG 59.516 50.000 16.48 1.86 0.00 5.28
2725 2794 9.483916 TCTTGTAAACGACTCATTAAGATCAAA 57.516 29.630 0.00 0.00 0.00 2.69
3098 3458 9.793259 AAGTCTATCAAGGAATTCTGTAAACAA 57.207 29.630 5.23 0.00 0.00 2.83
3115 3475 9.764363 ATAAATGCACGAATAGAAAGTCTATCA 57.236 29.630 0.00 0.00 38.66 2.15
3399 3934 3.995705 CTCTCAAGTCTTTCCTGCAAGAG 59.004 47.826 0.00 0.00 33.29 2.85
3439 3974 9.918630 AAAGTTCAAGATTTATATGCATATGGC 57.081 29.630 26.21 13.56 45.13 4.40
3519 4054 1.359848 CGCTTATCGAAAGCACTGGT 58.640 50.000 22.96 0.00 43.15 4.00
3741 4276 5.584251 CCTCTTCCTTGATCTTAAGCTTCAC 59.416 44.000 0.00 0.00 0.00 3.18
3788 4323 3.570550 GGGACTCGTAGCAAGATGAGTAT 59.429 47.826 7.82 0.00 44.10 2.12
3794 4329 2.028130 CTCAGGGACTCGTAGCAAGAT 58.972 52.381 0.00 0.00 34.60 2.40
3842 4377 2.319844 TGAGCCTGTTTCTCACTGAGA 58.680 47.619 4.50 4.50 35.81 3.27
4100 4635 2.042537 TGCCACTTGCCCAAACCA 60.043 55.556 0.00 0.00 40.16 3.67
4186 4724 2.207229 CCACCACCACGACCAGAGA 61.207 63.158 0.00 0.00 0.00 3.10
4219 4757 0.680061 ACTCCTGTCGTTCTGGAACC 59.320 55.000 7.74 0.00 42.23 3.62
4226 4764 1.374758 CTGGCCACTCCTGTCGTTC 60.375 63.158 0.00 0.00 35.26 3.95
4528 5084 6.718454 AACAGATTCAGATCAGAAAACTCG 57.282 37.500 4.51 5.82 34.60 4.18
4565 5121 4.260538 GCAGATTCAGATCAAAAGCTACCG 60.261 45.833 0.00 0.00 34.60 4.02
4601 5158 6.206634 CCACAACACAAACCATATAACTCAGT 59.793 38.462 0.00 0.00 0.00 3.41
4611 5168 2.452600 ACTCCCACAACACAAACCAT 57.547 45.000 0.00 0.00 0.00 3.55
4663 5220 5.248870 CCACTGCATGGTATAAACCTTTC 57.751 43.478 0.00 0.00 46.91 2.62
4706 5263 1.812235 TCAGCCACAACACATAGCAG 58.188 50.000 0.00 0.00 0.00 4.24
4709 5266 6.317088 CAGTAAAATCAGCCACAACACATAG 58.683 40.000 0.00 0.00 0.00 2.23
4731 5288 1.451651 GTTCCGCAACAAAAATCGCAG 59.548 47.619 0.00 0.00 32.14 5.18
4746 5304 1.664151 GCCCTGTAGATTTTCGTTCCG 59.336 52.381 0.00 0.00 0.00 4.30
4747 5305 2.987232 AGCCCTGTAGATTTTCGTTCC 58.013 47.619 0.00 0.00 0.00 3.62
4748 5306 4.000988 TCAAGCCCTGTAGATTTTCGTTC 58.999 43.478 0.00 0.00 0.00 3.95
4749 5307 4.015872 TCAAGCCCTGTAGATTTTCGTT 57.984 40.909 0.00 0.00 0.00 3.85
4750 5308 3.695830 TCAAGCCCTGTAGATTTTCGT 57.304 42.857 0.00 0.00 0.00 3.85
4751 5309 4.003648 ACTTCAAGCCCTGTAGATTTTCG 58.996 43.478 0.00 0.00 0.00 3.46
4752 5310 5.249420 AGACTTCAAGCCCTGTAGATTTTC 58.751 41.667 0.00 0.00 0.00 2.29
4753 5311 5.248380 AGACTTCAAGCCCTGTAGATTTT 57.752 39.130 0.00 0.00 0.00 1.82
4754 5312 4.917906 AGACTTCAAGCCCTGTAGATTT 57.082 40.909 0.00 0.00 0.00 2.17
4755 5313 4.917906 AAGACTTCAAGCCCTGTAGATT 57.082 40.909 0.00 0.00 0.00 2.40
4756 5314 6.567602 AATAAGACTTCAAGCCCTGTAGAT 57.432 37.500 0.00 0.00 0.00 1.98
4757 5315 6.013725 TCAAATAAGACTTCAAGCCCTGTAGA 60.014 38.462 0.00 0.00 0.00 2.59
4758 5316 6.173339 TCAAATAAGACTTCAAGCCCTGTAG 58.827 40.000 0.00 0.00 0.00 2.74
4759 5317 6.013725 TCTCAAATAAGACTTCAAGCCCTGTA 60.014 38.462 0.00 0.00 0.00 2.74
4760 5318 4.985538 TCAAATAAGACTTCAAGCCCTGT 58.014 39.130 0.00 0.00 0.00 4.00
4761 5319 5.248640 TCTCAAATAAGACTTCAAGCCCTG 58.751 41.667 0.00 0.00 0.00 4.45
4762 5320 5.505181 TCTCAAATAAGACTTCAAGCCCT 57.495 39.130 0.00 0.00 0.00 5.19
4763 5321 5.707764 AGTTCTCAAATAAGACTTCAAGCCC 59.292 40.000 0.00 0.00 0.00 5.19
4768 5326 6.868864 CCGAAGAGTTCTCAAATAAGACTTCA 59.131 38.462 0.00 0.00 30.79 3.02
4775 5333 9.362539 GTATACAACCGAAGAGTTCTCAAATAA 57.637 33.333 0.00 0.00 0.00 1.40
4778 5336 6.989659 AGTATACAACCGAAGAGTTCTCAAA 58.010 36.000 5.50 0.00 0.00 2.69
4797 5355 9.959721 GGGCTTCTTATGATAATTGGAAGTATA 57.040 33.333 11.76 0.00 34.50 1.47
4798 5356 7.890655 GGGGCTTCTTATGATAATTGGAAGTAT 59.109 37.037 11.76 0.00 34.50 2.12
4810 5370 0.179018 GTGCGGGGGCTTCTTATGAT 60.179 55.000 0.00 0.00 0.00 2.45
4811 5371 1.223487 GTGCGGGGGCTTCTTATGA 59.777 57.895 0.00 0.00 0.00 2.15
4821 5381 3.814268 CATTTCAGCGTGCGGGGG 61.814 66.667 0.00 0.00 0.00 5.40
4822 5382 3.814268 CCATTTCAGCGTGCGGGG 61.814 66.667 0.00 0.00 0.00 5.73
4823 5383 2.331893 TTCCATTTCAGCGTGCGGG 61.332 57.895 0.00 0.00 0.00 6.13
4824 5384 1.154225 GTTCCATTTCAGCGTGCGG 60.154 57.895 0.00 0.00 0.00 5.69
4825 5385 1.509787 CGTTCCATTTCAGCGTGCG 60.510 57.895 0.00 0.00 0.00 5.34
4826 5386 0.237235 TTCGTTCCATTTCAGCGTGC 59.763 50.000 0.00 0.00 0.00 5.34
4849 5409 1.269569 TGGCGGTGAATATGCGAGTAG 60.270 52.381 0.00 0.00 0.00 2.57
4851 5411 0.530650 CTGGCGGTGAATATGCGAGT 60.531 55.000 0.00 0.00 30.93 4.18
4853 5413 1.520192 ACTGGCGGTGAATATGCGA 59.480 52.632 0.00 0.00 0.00 5.10
4854 5414 4.124910 ACTGGCGGTGAATATGCG 57.875 55.556 0.00 0.00 0.00 4.73
4880 5492 5.452255 TCAGTTCGGTACCAATACTAGGAT 58.548 41.667 13.54 0.00 0.00 3.24
4886 5499 4.572909 AGGTTTCAGTTCGGTACCAATAC 58.427 43.478 13.54 6.33 0.00 1.89
4888 5501 3.782656 AGGTTTCAGTTCGGTACCAAT 57.217 42.857 13.54 0.00 0.00 3.16
4899 5512 5.701290 CGACCTAAAAGATCAAGGTTTCAGT 59.299 40.000 9.57 0.54 43.69 3.41
4903 5516 7.761038 AAATCGACCTAAAAGATCAAGGTTT 57.239 32.000 9.57 1.21 43.69 3.27
4904 5517 7.761038 AAAATCGACCTAAAAGATCAAGGTT 57.239 32.000 9.57 0.00 43.69 3.50
4911 5524 8.802267 TGGAAATCAAAAATCGACCTAAAAGAT 58.198 29.630 0.00 0.00 0.00 2.40
4912 5525 8.172352 TGGAAATCAAAAATCGACCTAAAAGA 57.828 30.769 0.00 0.00 0.00 2.52
4913 5526 7.062255 GCTGGAAATCAAAAATCGACCTAAAAG 59.938 37.037 0.00 0.00 0.00 2.27
4914 5527 6.866248 GCTGGAAATCAAAAATCGACCTAAAA 59.134 34.615 0.00 0.00 0.00 1.52
4928 5559 1.555075 AGTAGAGCCGCTGGAAATCAA 59.445 47.619 0.00 0.00 0.00 2.57
4939 5570 0.732880 CGTGTTGGACAGTAGAGCCG 60.733 60.000 0.00 0.00 0.00 5.52
4941 5572 0.038159 AGCGTGTTGGACAGTAGAGC 60.038 55.000 0.00 0.00 0.00 4.09
4944 5575 1.617755 CGCAGCGTGTTGGACAGTAG 61.618 60.000 6.65 0.00 0.00 2.57
4970 5601 4.040217 CAGGAAATCAGGATCGGATCTTCT 59.960 45.833 16.96 4.62 0.00 2.85
5050 5681 1.260544 GGCTCAGGGCAAGTCAAATT 58.739 50.000 0.00 0.00 44.01 1.82
5082 5713 4.560128 AGCATCGCATCGAAATACAGTAT 58.440 39.130 0.00 0.00 39.99 2.12
5085 5716 3.055591 AGAGCATCGCATCGAAATACAG 58.944 45.455 0.00 0.00 42.67 2.74
5145 5776 8.019669 CGATCATTCTGATTCAAAACAAGAACT 58.980 33.333 0.00 0.00 37.20 3.01
5146 5777 8.017373 TCGATCATTCTGATTCAAAACAAGAAC 58.983 33.333 0.00 0.00 37.20 3.01
5147 5778 8.098220 TCGATCATTCTGATTCAAAACAAGAA 57.902 30.769 0.00 0.00 37.20 2.52
5148 5779 7.671495 TCGATCATTCTGATTCAAAACAAGA 57.329 32.000 0.00 0.00 37.20 3.02
5149 5780 8.906636 ATTCGATCATTCTGATTCAAAACAAG 57.093 30.769 0.00 0.00 37.20 3.16
5150 5781 7.970061 GGATTCGATCATTCTGATTCAAAACAA 59.030 33.333 0.00 0.00 37.20 2.83
5151 5782 7.337689 AGGATTCGATCATTCTGATTCAAAACA 59.662 33.333 0.00 0.00 37.20 2.83
5152 5783 7.701445 AGGATTCGATCATTCTGATTCAAAAC 58.299 34.615 0.00 0.00 37.20 2.43
5153 5784 7.870509 AGGATTCGATCATTCTGATTCAAAA 57.129 32.000 0.00 0.00 37.20 2.44
5154 5785 7.870509 AAGGATTCGATCATTCTGATTCAAA 57.129 32.000 0.00 0.00 37.20 2.69
5155 5786 7.553760 TGAAAGGATTCGATCATTCTGATTCAA 59.446 33.333 0.00 0.00 38.46 2.69
5156 5787 7.049754 TGAAAGGATTCGATCATTCTGATTCA 58.950 34.615 0.00 0.00 38.46 2.57
5157 5788 7.488187 TGAAAGGATTCGATCATTCTGATTC 57.512 36.000 0.00 0.00 38.46 2.52
5158 5789 7.466455 CGTTGAAAGGATTCGATCATTCTGATT 60.466 37.037 0.00 0.00 38.46 2.57
5159 5790 6.018425 CGTTGAAAGGATTCGATCATTCTGAT 60.018 38.462 0.00 0.00 38.46 2.90
5160 5791 5.291858 CGTTGAAAGGATTCGATCATTCTGA 59.708 40.000 0.00 0.00 38.46 3.27
5161 5792 5.291858 TCGTTGAAAGGATTCGATCATTCTG 59.708 40.000 0.00 0.00 38.46 3.02
5162 5793 5.419542 TCGTTGAAAGGATTCGATCATTCT 58.580 37.500 0.00 0.00 38.46 2.40
5163 5794 5.718649 TCGTTGAAAGGATTCGATCATTC 57.281 39.130 0.00 0.00 38.46 2.67
5164 5795 5.008019 CCATCGTTGAAAGGATTCGATCATT 59.992 40.000 0.00 0.00 38.82 2.57
5165 5796 4.512944 CCATCGTTGAAAGGATTCGATCAT 59.487 41.667 0.00 0.00 38.82 2.45
5166 5797 3.871006 CCATCGTTGAAAGGATTCGATCA 59.129 43.478 0.00 0.00 38.82 2.92
5167 5798 3.871594 ACCATCGTTGAAAGGATTCGATC 59.128 43.478 0.00 0.00 38.82 3.69
5168 5799 3.873910 ACCATCGTTGAAAGGATTCGAT 58.126 40.909 0.00 0.00 40.95 3.59
5169 5800 3.328382 ACCATCGTTGAAAGGATTCGA 57.672 42.857 0.00 0.00 38.46 3.71
5170 5801 4.390603 TGTAACCATCGTTGAAAGGATTCG 59.609 41.667 0.00 0.00 38.46 3.34
5171 5802 5.873179 TGTAACCATCGTTGAAAGGATTC 57.127 39.130 0.00 0.00 31.70 2.52
5172 5803 5.710099 ACATGTAACCATCGTTGAAAGGATT 59.290 36.000 0.00 0.00 31.70 3.01
5173 5804 5.253330 ACATGTAACCATCGTTGAAAGGAT 58.747 37.500 0.00 0.00 34.13 3.24
5174 5805 4.647611 ACATGTAACCATCGTTGAAAGGA 58.352 39.130 0.00 0.00 33.17 3.36
5175 5806 4.142687 GGACATGTAACCATCGTTGAAAGG 60.143 45.833 0.00 0.00 33.17 3.11
5176 5807 4.142687 GGGACATGTAACCATCGTTGAAAG 60.143 45.833 12.86 0.00 33.17 2.62
5177 5808 3.754323 GGGACATGTAACCATCGTTGAAA 59.246 43.478 12.86 0.00 33.17 2.69
5178 5809 3.340034 GGGACATGTAACCATCGTTGAA 58.660 45.455 12.86 0.00 33.17 2.69
5179 5810 2.355310 GGGGACATGTAACCATCGTTGA 60.355 50.000 17.94 0.00 33.17 3.18
5180 5811 2.014128 GGGGACATGTAACCATCGTTG 58.986 52.381 17.94 0.00 33.17 4.10
5181 5812 1.913419 AGGGGACATGTAACCATCGTT 59.087 47.619 17.94 0.00 35.90 3.85
5182 5813 1.580059 AGGGGACATGTAACCATCGT 58.420 50.000 17.94 0.00 0.00 3.73
5183 5814 2.710096 AAGGGGACATGTAACCATCG 57.290 50.000 17.94 0.00 0.00 3.84
5184 5815 8.164070 AGATATAAAAGGGGACATGTAACCATC 58.836 37.037 17.94 11.51 0.00 3.51
5185 5816 8.057246 AGATATAAAAGGGGACATGTAACCAT 57.943 34.615 17.94 10.23 0.00 3.55
5186 5817 7.349859 AGAGATATAAAAGGGGACATGTAACCA 59.650 37.037 17.94 1.10 0.00 3.67
5187 5818 7.746703 AGAGATATAAAAGGGGACATGTAACC 58.253 38.462 0.00 4.19 0.00 2.85
5188 5819 7.599245 CGAGAGATATAAAAGGGGACATGTAAC 59.401 40.741 0.00 0.00 0.00 2.50
5189 5820 7.507956 TCGAGAGATATAAAAGGGGACATGTAA 59.492 37.037 0.00 0.00 33.31 2.41
5190 5821 7.008332 TCGAGAGATATAAAAGGGGACATGTA 58.992 38.462 0.00 0.00 33.31 2.29
5191 5822 5.839063 TCGAGAGATATAAAAGGGGACATGT 59.161 40.000 0.00 0.00 33.31 3.21
5192 5823 6.346477 TCGAGAGATATAAAAGGGGACATG 57.654 41.667 0.00 0.00 33.31 3.21
5193 5824 6.014156 CCTTCGAGAGATATAAAAGGGGACAT 60.014 42.308 0.00 0.00 41.60 3.06
5194 5825 5.304614 CCTTCGAGAGATATAAAAGGGGACA 59.695 44.000 0.00 0.00 41.60 4.02
5195 5826 5.279556 CCCTTCGAGAGATATAAAAGGGGAC 60.280 48.000 9.65 0.00 43.79 4.46
5196 5827 4.838986 CCCTTCGAGAGATATAAAAGGGGA 59.161 45.833 9.65 0.00 43.79 4.81
5197 5828 4.838986 TCCCTTCGAGAGATATAAAAGGGG 59.161 45.833 15.94 1.63 46.25 4.79
5199 5830 6.217294 GTGTCCCTTCGAGAGATATAAAAGG 58.783 44.000 0.00 0.00 41.60 3.11
5200 5831 5.915758 CGTGTCCCTTCGAGAGATATAAAAG 59.084 44.000 0.00 0.00 41.60 2.27
5201 5832 5.591472 TCGTGTCCCTTCGAGAGATATAAAA 59.409 40.000 0.00 0.00 41.60 1.52
5202 5833 5.008415 GTCGTGTCCCTTCGAGAGATATAAA 59.992 44.000 0.00 0.00 41.60 1.40
5203 5834 4.514441 GTCGTGTCCCTTCGAGAGATATAA 59.486 45.833 0.00 0.00 41.60 0.98
5204 5835 4.063689 GTCGTGTCCCTTCGAGAGATATA 58.936 47.826 0.00 0.00 41.60 0.86
5205 5836 2.879646 GTCGTGTCCCTTCGAGAGATAT 59.120 50.000 0.00 0.00 41.60 1.63
5206 5837 2.286872 GTCGTGTCCCTTCGAGAGATA 58.713 52.381 0.00 0.00 41.60 1.98
5207 5838 1.096416 GTCGTGTCCCTTCGAGAGAT 58.904 55.000 0.00 0.00 41.60 2.75
5208 5839 1.296755 CGTCGTGTCCCTTCGAGAGA 61.297 60.000 0.00 0.00 36.76 3.10
5209 5840 1.134901 CGTCGTGTCCCTTCGAGAG 59.865 63.158 0.00 0.00 36.76 3.20
5210 5841 0.675837 ATCGTCGTGTCCCTTCGAGA 60.676 55.000 0.00 0.00 36.76 4.04
5211 5842 0.248134 GATCGTCGTGTCCCTTCGAG 60.248 60.000 0.00 0.00 36.76 4.04
5212 5843 1.651240 GGATCGTCGTGTCCCTTCGA 61.651 60.000 7.82 0.00 35.14 3.71
5213 5844 1.226603 GGATCGTCGTGTCCCTTCG 60.227 63.158 7.82 0.00 0.00 3.79
5214 5845 4.808649 GGATCGTCGTGTCCCTTC 57.191 61.111 7.82 0.00 0.00 3.46
5218 5849 2.049475 CTCGAGGGATCGTCGTGTCC 62.049 65.000 3.91 9.87 41.54 4.02
5219 5850 1.352404 CTCGAGGGATCGTCGTGTC 59.648 63.158 3.91 0.00 41.54 3.67
5220 5851 2.113433 CCTCGAGGGATCGTCGTGT 61.113 63.158 24.62 0.00 41.54 4.49
5221 5852 1.777030 CTCCTCGAGGGATCGTCGTG 61.777 65.000 30.80 11.78 44.15 4.35
5222 5853 1.524165 CTCCTCGAGGGATCGTCGT 60.524 63.158 30.80 0.00 44.15 4.34
5223 5854 2.255172 CCTCCTCGAGGGATCGTCG 61.255 68.421 30.80 10.53 45.43 5.12
5224 5855 3.752704 CCTCCTCGAGGGATCGTC 58.247 66.667 30.80 0.00 45.43 4.20
5232 5863 3.398353 GAACCGACGCCTCCTCGAG 62.398 68.421 5.13 5.13 32.65 4.04
5233 5864 3.437795 GAACCGACGCCTCCTCGA 61.438 66.667 0.00 0.00 32.65 4.04
5234 5865 4.493747 GGAACCGACGCCTCCTCG 62.494 72.222 6.27 0.00 0.00 4.63
5235 5866 3.358076 CTGGAACCGACGCCTCCTC 62.358 68.421 12.88 0.00 0.00 3.71
5236 5867 3.382832 CTGGAACCGACGCCTCCT 61.383 66.667 12.88 0.00 0.00 3.69
5237 5868 4.452733 CCTGGAACCGACGCCTCC 62.453 72.222 6.52 6.52 0.00 4.30
5238 5869 3.358076 CTCCTGGAACCGACGCCTC 62.358 68.421 0.00 0.00 0.00 4.70
5239 5870 3.382832 CTCCTGGAACCGACGCCT 61.383 66.667 0.00 0.00 0.00 5.52
5240 5871 2.630592 GATCTCCTGGAACCGACGCC 62.631 65.000 0.00 0.00 0.00 5.68
5241 5872 1.227002 GATCTCCTGGAACCGACGC 60.227 63.158 0.00 0.00 0.00 5.19
5242 5873 1.064296 CGATCTCCTGGAACCGACG 59.936 63.158 0.00 0.00 0.00 5.12
5243 5874 0.815734 TTCGATCTCCTGGAACCGAC 59.184 55.000 12.29 0.00 0.00 4.79
5244 5875 1.103803 CTTCGATCTCCTGGAACCGA 58.896 55.000 9.65 9.65 0.00 4.69
5245 5876 0.103208 CCTTCGATCTCCTGGAACCG 59.897 60.000 0.00 1.84 0.00 4.44
5246 5877 0.466124 CCCTTCGATCTCCTGGAACC 59.534 60.000 0.00 0.00 0.00 3.62
5247 5878 1.410882 CTCCCTTCGATCTCCTGGAAC 59.589 57.143 0.00 0.00 0.00 3.62
5248 5879 1.689575 CCTCCCTTCGATCTCCTGGAA 60.690 57.143 0.00 0.00 0.00 3.53
5249 5880 0.105964 CCTCCCTTCGATCTCCTGGA 60.106 60.000 0.00 0.00 0.00 3.86
5250 5881 1.753368 GCCTCCCTTCGATCTCCTGG 61.753 65.000 0.00 0.00 0.00 4.45
5251 5882 1.745264 GCCTCCCTTCGATCTCCTG 59.255 63.158 0.00 0.00 0.00 3.86
5252 5883 1.830408 CGCCTCCCTTCGATCTCCT 60.830 63.158 0.00 0.00 0.00 3.69
5253 5884 2.077821 GACGCCTCCCTTCGATCTCC 62.078 65.000 0.00 0.00 0.00 3.71
5254 5885 1.360911 GACGCCTCCCTTCGATCTC 59.639 63.158 0.00 0.00 0.00 2.75
5255 5886 2.482333 CGACGCCTCCCTTCGATCT 61.482 63.158 0.00 0.00 37.39 2.75
5256 5887 2.026301 CGACGCCTCCCTTCGATC 59.974 66.667 0.00 0.00 37.39 3.69
5257 5888 3.528370 CCGACGCCTCCCTTCGAT 61.528 66.667 0.00 0.00 37.39 3.59
5259 5890 4.065281 AACCGACGCCTCCCTTCG 62.065 66.667 0.00 0.00 35.24 3.79
5260 5891 2.434359 CAACCGACGCCTCCCTTC 60.434 66.667 0.00 0.00 0.00 3.46
5261 5892 4.699522 GCAACCGACGCCTCCCTT 62.700 66.667 0.00 0.00 0.00 3.95
5269 5900 2.968156 TTTGTCCCGCAACCGACG 60.968 61.111 0.00 0.00 36.72 5.12
5270 5901 2.635338 GTTTGTCCCGCAACCGAC 59.365 61.111 0.00 0.00 36.72 4.79
5271 5902 2.592287 GGTTTGTCCCGCAACCGA 60.592 61.111 0.00 0.00 36.72 4.69
5272 5903 4.020378 CGGTTTGTCCCGCAACCG 62.020 66.667 9.08 9.08 41.78 4.44
5279 5910 2.635338 GTCGTTGCGGTTTGTCCC 59.365 61.111 0.00 0.00 0.00 4.46
5280 5911 2.247267 CGTCGTTGCGGTTTGTCC 59.753 61.111 0.00 0.00 0.00 4.02
5281 5912 2.247267 CCGTCGTTGCGGTTTGTC 59.753 61.111 7.45 0.00 46.11 3.18
5288 5919 4.676586 GCCCAAACCGTCGTTGCG 62.677 66.667 0.00 0.00 30.72 4.85
5289 5920 2.999363 CTTGCCCAAACCGTCGTTGC 62.999 60.000 0.00 0.00 30.72 4.17
5290 5921 1.008995 CTTGCCCAAACCGTCGTTG 60.009 57.895 0.00 0.00 30.72 4.10
5291 5922 2.190841 CCTTGCCCAAACCGTCGTT 61.191 57.895 0.00 0.00 0.00 3.85
5292 5923 2.593436 CCTTGCCCAAACCGTCGT 60.593 61.111 0.00 0.00 0.00 4.34
5293 5924 3.361977 CCCTTGCCCAAACCGTCG 61.362 66.667 0.00 0.00 0.00 5.12
5294 5925 2.989253 CCCCTTGCCCAAACCGTC 60.989 66.667 0.00 0.00 0.00 4.79
5295 5926 3.503839 TCCCCTTGCCCAAACCGT 61.504 61.111 0.00 0.00 0.00 4.83
5296 5927 2.499303 ATCTCCCCTTGCCCAAACCG 62.499 60.000 0.00 0.00 0.00 4.44
5297 5928 0.252239 AATCTCCCCTTGCCCAAACC 60.252 55.000 0.00 0.00 0.00 3.27
5298 5929 1.644509 AAATCTCCCCTTGCCCAAAC 58.355 50.000 0.00 0.00 0.00 2.93
5299 5930 2.414250 AAAATCTCCCCTTGCCCAAA 57.586 45.000 0.00 0.00 0.00 3.28
5300 5931 2.256306 GAAAAATCTCCCCTTGCCCAA 58.744 47.619 0.00 0.00 0.00 4.12
5301 5932 1.552254 GGAAAAATCTCCCCTTGCCCA 60.552 52.381 0.00 0.00 0.00 5.36
5302 5933 1.195115 GGAAAAATCTCCCCTTGCCC 58.805 55.000 0.00 0.00 0.00 5.36
5326 5957 9.027202 GGGGGAGTGTTAAAAATAATTCTGTAA 57.973 33.333 0.00 0.00 0.00 2.41
5327 5958 8.395605 AGGGGGAGTGTTAAAAATAATTCTGTA 58.604 33.333 0.00 0.00 0.00 2.74
5328 5959 7.246027 AGGGGGAGTGTTAAAAATAATTCTGT 58.754 34.615 0.00 0.00 0.00 3.41
5329 5960 7.718334 AGGGGGAGTGTTAAAAATAATTCTG 57.282 36.000 0.00 0.00 0.00 3.02
5334 5965 9.910267 GTAGATTAGGGGGAGTGTTAAAAATAA 57.090 33.333 0.00 0.00 0.00 1.40
5335 5966 8.206189 CGTAGATTAGGGGGAGTGTTAAAAATA 58.794 37.037 0.00 0.00 0.00 1.40
5336 5967 7.052248 CGTAGATTAGGGGGAGTGTTAAAAAT 58.948 38.462 0.00 0.00 0.00 1.82
5337 5968 6.408869 CGTAGATTAGGGGGAGTGTTAAAAA 58.591 40.000 0.00 0.00 0.00 1.94
5338 5969 5.627503 GCGTAGATTAGGGGGAGTGTTAAAA 60.628 44.000 0.00 0.00 0.00 1.52
5339 5970 4.141869 GCGTAGATTAGGGGGAGTGTTAAA 60.142 45.833 0.00 0.00 0.00 1.52
5340 5971 3.385755 GCGTAGATTAGGGGGAGTGTTAA 59.614 47.826 0.00 0.00 0.00 2.01
5341 5972 2.961062 GCGTAGATTAGGGGGAGTGTTA 59.039 50.000 0.00 0.00 0.00 2.41
5342 5973 1.761198 GCGTAGATTAGGGGGAGTGTT 59.239 52.381 0.00 0.00 0.00 3.32
5343 5974 1.063114 AGCGTAGATTAGGGGGAGTGT 60.063 52.381 0.00 0.00 0.00 3.55
5344 5975 1.705873 AGCGTAGATTAGGGGGAGTG 58.294 55.000 0.00 0.00 0.00 3.51
5345 5976 2.473576 AAGCGTAGATTAGGGGGAGT 57.526 50.000 0.00 0.00 29.87 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.