Multiple sequence alignment - TraesCS5B01G410200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G410200 chr5B 100.000 5295 0 0 1 5295 585471927 585477221 0.000000e+00 9779.0
1 TraesCS5B01G410200 chr5B 96.154 520 19 1 4775 5294 556188220 556187702 0.000000e+00 848.0
2 TraesCS5B01G410200 chr5B 92.832 279 19 1 4774 5052 556186112 556186389 2.300000e-108 403.0
3 TraesCS5B01G410200 chr5B 92.806 278 18 2 4775 5052 121253126 121253401 8.260000e-108 401.0
4 TraesCS5B01G410200 chr5B 85.567 97 12 2 3699 3794 394744380 394744285 3.370000e-17 100.0
5 TraesCS5B01G410200 chr5D 93.803 2114 79 21 457 2531 477983262 477985362 0.000000e+00 3131.0
6 TraesCS5B01G410200 chr5D 94.502 2037 73 19 2763 4774 477985524 477987546 0.000000e+00 3105.0
7 TraesCS5B01G410200 chr5D 96.045 177 7 0 2549 2725 477985352 477985528 6.710000e-74 289.0
8 TraesCS5B01G410200 chr5D 85.567 97 12 2 3699 3794 336423180 336423085 3.370000e-17 100.0
9 TraesCS5B01G410200 chr5A 93.024 1964 83 26 2764 4689 597255949 597257896 0.000000e+00 2819.0
10 TraesCS5B01G410200 chr5A 89.084 2217 105 53 614 2745 597253800 597255964 0.000000e+00 2627.0
11 TraesCS5B01G410200 chr5A 84.536 97 13 2 3699 3794 437913606 437913511 1.570000e-15 95.3
12 TraesCS5B01G410200 chr7B 97.121 521 14 1 4775 5295 89006724 89006205 0.000000e+00 878.0
13 TraesCS5B01G410200 chr7B 96.346 520 17 2 4775 5294 104759377 104759894 0.000000e+00 854.0
14 TraesCS5B01G410200 chr7B 92.657 286 19 1 1 284 553328081 553328366 1.370000e-110 411.0
15 TraesCS5B01G410200 chr7B 92.606 284 17 3 1 283 692405270 692404990 6.390000e-109 405.0
16 TraesCS5B01G410200 chr3B 97.121 521 14 1 4775 5295 11920775 11921294 0.000000e+00 878.0
17 TraesCS5B01G410200 chr3B 94.326 282 14 1 1 280 739875831 739875550 1.050000e-116 431.0
18 TraesCS5B01G410200 chr1B 96.538 520 17 1 4775 5294 649307208 649307726 0.000000e+00 859.0
19 TraesCS5B01G410200 chr1B 93.357 286 15 2 1 282 547170323 547170608 2.280000e-113 420.0
20 TraesCS5B01G410200 chr1B 93.007 286 15 2 2 282 51962762 51962477 3.820000e-111 412.0
21 TraesCS5B01G410200 chr1B 90.769 65 5 1 3807 3870 222294484 222294548 9.450000e-13 86.1
22 TraesCS5B01G410200 chr2B 96.161 521 18 2 4775 5295 793151792 793152310 0.000000e+00 850.0
23 TraesCS5B01G410200 chr2B 93.007 286 17 2 1 283 456461045 456460760 1.060000e-111 414.0
24 TraesCS5B01G410200 chr2B 92.580 283 20 1 1 282 110757456 110757738 6.390000e-109 405.0
25 TraesCS5B01G410200 chr2B 92.086 139 11 0 2994 3132 361424348 361424210 4.180000e-46 196.0
26 TraesCS5B01G410200 chr2B 90.526 95 9 0 2589 2683 361424710 361424616 5.570000e-25 126.0
27 TraesCS5B01G410200 chr6B 93.286 283 19 0 1 283 422969195 422968913 8.200000e-113 418.0
28 TraesCS5B01G410200 chr6B 92.734 289 16 4 1 286 47870343 47870057 3.820000e-111 412.0
29 TraesCS5B01G410200 chr6B 91.667 168 9 2 5071 5237 473641384 473641221 1.480000e-55 228.0
30 TraesCS5B01G410200 chr6B 90.625 64 6 0 3807 3870 21012351 21012414 9.450000e-13 86.1
31 TraesCS5B01G410200 chr4B 93.165 278 18 1 4775 5052 94947808 94948084 1.780000e-109 407.0
32 TraesCS5B01G410200 chr4B 86.614 127 15 2 3714 3839 493530205 493530330 7.150000e-29 139.0
33 TraesCS5B01G410200 chr6A 89.362 235 14 6 5071 5295 442088578 442088345 8.680000e-73 285.0
34 TraesCS5B01G410200 chr2D 92.086 139 11 0 2994 3132 311717425 311717563 4.180000e-46 196.0
35 TraesCS5B01G410200 chr2D 93.846 65 3 1 3807 3870 19223945 19224009 4.360000e-16 97.1
36 TraesCS5B01G410200 chr2A 91.367 139 12 0 2994 3132 428909939 428910077 1.950000e-44 191.0
37 TraesCS5B01G410200 chr2A 89.474 95 10 0 2589 2683 428909577 428909671 2.590000e-23 121.0
38 TraesCS5B01G410200 chr4D 88.189 127 13 2 3714 3839 399534243 399534368 3.300000e-32 150.0
39 TraesCS5B01G410200 chr4A 87.402 127 14 2 3714 3839 57166250 57166375 1.540000e-30 145.0
40 TraesCS5B01G410200 chr7D 93.846 65 3 1 3807 3870 112614435 112614499 4.360000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G410200 chr5B 585471927 585477221 5294 False 9779 9779 100.000000 1 5295 1 chr5B.!!$F3 5294
1 TraesCS5B01G410200 chr5B 556187702 556188220 518 True 848 848 96.154000 4775 5294 1 chr5B.!!$R2 519
2 TraesCS5B01G410200 chr5D 477983262 477987546 4284 False 2175 3131 94.783333 457 4774 3 chr5D.!!$F1 4317
3 TraesCS5B01G410200 chr5A 597253800 597257896 4096 False 2723 2819 91.054000 614 4689 2 chr5A.!!$F1 4075
4 TraesCS5B01G410200 chr7B 89006205 89006724 519 True 878 878 97.121000 4775 5295 1 chr7B.!!$R1 520
5 TraesCS5B01G410200 chr7B 104759377 104759894 517 False 854 854 96.346000 4775 5294 1 chr7B.!!$F1 519
6 TraesCS5B01G410200 chr3B 11920775 11921294 519 False 878 878 97.121000 4775 5295 1 chr3B.!!$F1 520
7 TraesCS5B01G410200 chr1B 649307208 649307726 518 False 859 859 96.538000 4775 5294 1 chr1B.!!$F3 519
8 TraesCS5B01G410200 chr2B 793151792 793152310 518 False 850 850 96.161000 4775 5295 1 chr2B.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.038526 ACGAAGTCCCACGACACATC 60.039 55.000 0.00 0.0 41.87 3.06 F
456 457 0.243907 CGAAGTCCCACGACACATCT 59.756 55.000 0.00 0.0 41.87 2.90 F
964 992 1.061812 ACCATAGCCTCATCCCAGTCT 60.062 52.381 0.00 0.0 0.00 3.24 F
2418 2513 0.098905 TCGATCGTGCTTCTTCTCGG 59.901 55.000 15.94 0.0 0.00 4.63 F
2936 3045 0.106318 ATGCTTGCCCTGAATCCTCC 60.106 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2476 0.039618 GATCCCCAGGCAAAAGGTCA 59.960 55.000 0.0 0.0 0.00 4.02 R
2418 2513 3.619038 CCAAGATAAACTGAAGACGGAGC 59.381 47.826 0.0 0.0 0.00 4.70 R
2805 2909 0.043138 GCACGCACACACAAAAATGC 60.043 50.000 0.0 0.0 34.66 3.56 R
3987 4136 0.109039 GGACTCACTCGACAGAAGGC 60.109 60.000 0.0 0.0 0.00 4.35 R
4862 5021 0.257039 GCCAGAGATGTTGGGGTCAT 59.743 55.000 0.0 0.0 36.19 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.212888 GGCATGGACTTTTATTCATCAACT 57.787 37.500 0.00 0.00 0.00 3.16
24 25 6.633856 GGCATGGACTTTTATTCATCAACTT 58.366 36.000 0.00 0.00 0.00 2.66
25 26 6.532657 GGCATGGACTTTTATTCATCAACTTG 59.467 38.462 0.00 0.00 0.00 3.16
26 27 7.092716 GCATGGACTTTTATTCATCAACTTGT 58.907 34.615 0.00 0.00 0.00 3.16
27 28 7.599998 GCATGGACTTTTATTCATCAACTTGTT 59.400 33.333 0.00 0.00 0.00 2.83
28 29 9.480053 CATGGACTTTTATTCATCAACTTGTTT 57.520 29.630 0.00 0.00 0.00 2.83
43 44 9.814899 ATCAACTTGTTTATGTCAATTTTCACA 57.185 25.926 0.00 0.00 0.00 3.58
44 45 9.814899 TCAACTTGTTTATGTCAATTTTCACAT 57.185 25.926 0.00 0.00 37.08 3.21
45 46 9.852481 CAACTTGTTTATGTCAATTTTCACATG 57.148 29.630 0.00 0.00 34.92 3.21
46 47 9.598517 AACTTGTTTATGTCAATTTTCACATGT 57.401 25.926 0.00 0.00 34.92 3.21
47 48 9.598517 ACTTGTTTATGTCAATTTTCACATGTT 57.401 25.926 0.00 0.00 34.92 2.71
49 50 9.591792 TTGTTTATGTCAATTTTCACATGTTCA 57.408 25.926 0.00 0.00 34.92 3.18
50 51 9.761504 TGTTTATGTCAATTTTCACATGTTCAT 57.238 25.926 0.00 0.00 34.92 2.57
53 54 6.528014 TGTCAATTTTCACATGTTCATTGC 57.472 33.333 0.00 0.85 0.00 3.56
54 55 6.047231 TGTCAATTTTCACATGTTCATTGCA 58.953 32.000 0.00 3.15 0.00 4.08
55 56 6.706716 TGTCAATTTTCACATGTTCATTGCAT 59.293 30.769 0.00 0.00 0.00 3.96
56 57 7.226918 TGTCAATTTTCACATGTTCATTGCATT 59.773 29.630 0.00 0.00 0.00 3.56
57 58 8.071368 GTCAATTTTCACATGTTCATTGCATTT 58.929 29.630 0.00 0.00 0.00 2.32
58 59 8.622157 TCAATTTTCACATGTTCATTGCATTTT 58.378 25.926 0.00 0.00 0.00 1.82
59 60 8.686418 CAATTTTCACATGTTCATTGCATTTTG 58.314 29.630 0.00 0.00 0.00 2.44
60 61 7.549615 TTTTCACATGTTCATTGCATTTTGA 57.450 28.000 0.00 0.00 0.00 2.69
61 62 7.731882 TTTCACATGTTCATTGCATTTTGAT 57.268 28.000 0.00 0.00 0.00 2.57
62 63 6.713792 TCACATGTTCATTGCATTTTGATG 57.286 33.333 0.00 0.00 0.00 3.07
63 64 6.456501 TCACATGTTCATTGCATTTTGATGA 58.543 32.000 0.00 0.00 0.00 2.92
64 65 6.929606 TCACATGTTCATTGCATTTTGATGAA 59.070 30.769 6.65 6.65 37.43 2.57
65 66 7.604545 TCACATGTTCATTGCATTTTGATGAAT 59.395 29.630 12.57 0.00 40.63 2.57
66 67 7.691877 CACATGTTCATTGCATTTTGATGAATG 59.308 33.333 12.57 10.54 40.63 2.67
67 68 7.389330 ACATGTTCATTGCATTTTGATGAATGT 59.611 29.630 12.57 11.04 40.63 2.71
68 69 7.731882 TGTTCATTGCATTTTGATGAATGTT 57.268 28.000 12.57 0.00 40.63 2.71
69 70 8.155821 TGTTCATTGCATTTTGATGAATGTTT 57.844 26.923 12.57 0.00 40.63 2.83
70 71 8.283992 TGTTCATTGCATTTTGATGAATGTTTC 58.716 29.630 12.57 2.60 40.63 2.78
71 72 7.964604 TCATTGCATTTTGATGAATGTTTCA 57.035 28.000 0.00 0.00 45.01 2.69
72 73 8.379457 TCATTGCATTTTGATGAATGTTTCAA 57.621 26.923 0.00 0.00 43.95 2.69
73 74 8.837389 TCATTGCATTTTGATGAATGTTTCAAA 58.163 25.926 0.00 0.00 43.95 2.69
74 75 8.897809 CATTGCATTTTGATGAATGTTTCAAAC 58.102 29.630 0.00 0.00 43.95 2.93
75 76 7.789273 TGCATTTTGATGAATGTTTCAAACT 57.211 28.000 1.10 0.00 43.95 2.66
76 77 7.853524 TGCATTTTGATGAATGTTTCAAACTC 58.146 30.769 1.10 0.00 43.95 3.01
77 78 7.494952 TGCATTTTGATGAATGTTTCAAACTCA 59.505 29.630 1.10 0.00 43.95 3.41
78 79 8.500773 GCATTTTGATGAATGTTTCAAACTCAT 58.499 29.630 5.00 5.00 43.95 2.90
83 84 8.945481 TGATGAATGTTTCAAACTCATTTTGT 57.055 26.923 6.49 0.00 44.47 2.83
84 85 8.819015 TGATGAATGTTTCAAACTCATTTTGTG 58.181 29.630 6.49 0.00 44.47 3.33
85 86 8.721019 ATGAATGTTTCAAACTCATTTTGTGT 57.279 26.923 1.10 0.00 44.47 3.72
86 87 8.183830 TGAATGTTTCAAACTCATTTTGTGTC 57.816 30.769 1.10 0.00 44.47 3.67
87 88 7.277539 TGAATGTTTCAAACTCATTTTGTGTCC 59.722 33.333 1.10 0.00 44.47 4.02
88 89 6.030548 TGTTTCAAACTCATTTTGTGTCCA 57.969 33.333 1.10 0.00 44.47 4.02
89 90 6.459066 TGTTTCAAACTCATTTTGTGTCCAA 58.541 32.000 1.10 0.00 44.47 3.53
90 91 6.931281 TGTTTCAAACTCATTTTGTGTCCAAA 59.069 30.769 1.10 0.00 44.47 3.28
98 99 3.616956 TTTTGTGTCCAAAATGCCACA 57.383 38.095 0.00 0.00 43.72 4.17
99 100 3.834489 TTTGTGTCCAAAATGCCACAT 57.166 38.095 0.00 0.00 37.62 3.21
100 101 4.944619 TTTGTGTCCAAAATGCCACATA 57.055 36.364 0.00 0.00 37.62 2.29
101 102 5.480642 TTTGTGTCCAAAATGCCACATAT 57.519 34.783 0.00 0.00 37.62 1.78
102 103 4.453177 TGTGTCCAAAATGCCACATATG 57.547 40.909 0.00 0.00 33.19 1.78
103 104 3.831333 TGTGTCCAAAATGCCACATATGT 59.169 39.130 1.41 1.41 33.19 2.29
104 105 4.282957 TGTGTCCAAAATGCCACATATGTT 59.717 37.500 5.37 0.00 33.19 2.71
105 106 5.478332 TGTGTCCAAAATGCCACATATGTTA 59.522 36.000 5.37 0.00 33.19 2.41
106 107 6.015095 TGTGTCCAAAATGCCACATATGTTAA 60.015 34.615 5.37 0.00 33.19 2.01
107 108 6.870965 GTGTCCAAAATGCCACATATGTTAAA 59.129 34.615 5.37 0.00 0.00 1.52
108 109 7.548780 GTGTCCAAAATGCCACATATGTTAAAT 59.451 33.333 5.37 0.00 0.00 1.40
109 110 7.548427 TGTCCAAAATGCCACATATGTTAAATG 59.452 33.333 5.37 0.00 0.00 2.32
110 111 6.538021 TCCAAAATGCCACATATGTTAAATGC 59.462 34.615 5.37 5.03 0.00 3.56
111 112 6.238429 CCAAAATGCCACATATGTTAAATGCC 60.238 38.462 5.37 0.00 0.00 4.40
112 113 4.605640 ATGCCACATATGTTAAATGCCC 57.394 40.909 5.37 0.00 0.00 5.36
113 114 2.360483 TGCCACATATGTTAAATGCCCG 59.640 45.455 5.37 0.00 0.00 6.13
114 115 2.288152 GCCACATATGTTAAATGCCCGG 60.288 50.000 5.37 2.14 0.00 5.73
115 116 2.288152 CCACATATGTTAAATGCCCGGC 60.288 50.000 5.37 1.04 0.00 6.13
116 117 1.606668 ACATATGTTAAATGCCCGGCG 59.393 47.619 1.41 0.00 0.00 6.46
117 118 1.876799 CATATGTTAAATGCCCGGCGA 59.123 47.619 9.30 0.00 0.00 5.54
118 119 1.588674 TATGTTAAATGCCCGGCGAG 58.411 50.000 9.30 0.00 0.00 5.03
119 120 0.393808 ATGTTAAATGCCCGGCGAGT 60.394 50.000 9.30 0.00 0.00 4.18
120 121 1.022451 TGTTAAATGCCCGGCGAGTC 61.022 55.000 9.30 0.00 0.00 3.36
121 122 1.812093 TTAAATGCCCGGCGAGTCG 60.812 57.895 9.30 8.54 0.00 4.18
133 134 2.579787 GAGTCGCGCGTGCTGTAT 60.580 61.111 30.98 8.70 39.65 2.29
134 135 2.126071 AGTCGCGCGTGCTGTATT 60.126 55.556 30.98 2.36 39.65 1.89
135 136 1.683790 GAGTCGCGCGTGCTGTATTT 61.684 55.000 30.98 6.84 39.65 1.40
136 137 1.131826 GTCGCGCGTGCTGTATTTT 59.868 52.632 30.98 0.00 39.65 1.82
137 138 0.452122 GTCGCGCGTGCTGTATTTTT 60.452 50.000 30.98 0.00 39.65 1.94
138 139 0.451957 TCGCGCGTGCTGTATTTTTG 60.452 50.000 30.98 0.00 39.65 2.44
139 140 1.696083 GCGCGTGCTGTATTTTTGC 59.304 52.632 15.02 0.00 38.39 3.68
140 141 1.972801 CGCGTGCTGTATTTTTGCG 59.027 52.632 0.00 0.00 38.04 4.85
141 142 1.696083 GCGTGCTGTATTTTTGCGC 59.304 52.632 0.00 0.00 36.75 6.09
143 144 1.696083 GTGCTGTATTTTTGCGCGC 59.304 52.632 27.26 27.26 0.00 6.86
144 145 0.729140 GTGCTGTATTTTTGCGCGCT 60.729 50.000 33.29 14.40 0.00 5.92
145 146 0.728803 TGCTGTATTTTTGCGCGCTG 60.729 50.000 33.29 11.22 0.00 5.18
146 147 1.983160 CTGTATTTTTGCGCGCTGC 59.017 52.632 33.29 15.60 46.70 5.25
147 148 0.454957 CTGTATTTTTGCGCGCTGCT 60.455 50.000 33.29 14.39 46.63 4.24
148 149 0.728803 TGTATTTTTGCGCGCTGCTG 60.729 50.000 33.29 0.80 46.63 4.41
149 150 1.154054 TATTTTTGCGCGCTGCTGG 60.154 52.632 33.29 0.43 46.63 4.85
150 151 1.581727 TATTTTTGCGCGCTGCTGGA 61.582 50.000 33.29 13.45 46.63 3.86
151 152 2.807631 ATTTTTGCGCGCTGCTGGAG 62.808 55.000 33.29 0.00 46.63 3.86
172 173 4.058206 CGCGCGCGCTGCATTATA 62.058 61.111 45.97 0.00 46.97 0.98
173 174 2.202096 GCGCGCGCTGCATTATAG 60.202 61.111 44.38 15.91 46.97 1.31
174 175 2.202096 CGCGCGCTGCATTATAGC 60.202 61.111 30.48 6.56 46.97 2.97
180 181 3.957260 CTGCATTATAGCGCGGCT 58.043 55.556 8.83 8.38 43.41 5.52
181 182 1.494628 CTGCATTATAGCGCGGCTG 59.505 57.895 8.83 0.53 40.10 4.85
182 183 2.174349 GCATTATAGCGCGGCTGC 59.826 61.111 8.83 7.70 40.10 5.25
184 185 1.494628 CATTATAGCGCGGCTGCTG 59.505 57.895 22.96 10.42 46.70 4.41
185 186 1.669115 ATTATAGCGCGGCTGCTGG 60.669 57.895 22.96 1.40 46.70 4.85
186 187 2.099652 ATTATAGCGCGGCTGCTGGA 62.100 55.000 22.96 11.80 46.70 3.86
187 188 2.699576 TTATAGCGCGGCTGCTGGAG 62.700 60.000 22.96 0.14 46.70 3.86
211 212 3.849953 CTGGCGGACGCGCTAAAC 61.850 66.667 5.73 0.00 43.06 2.01
214 215 3.849953 GCGGACGCGCTAAACCAG 61.850 66.667 5.73 0.86 0.00 4.00
223 224 1.502190 GCTAAACCAGCCGAAGTGC 59.498 57.895 0.00 0.00 45.23 4.40
224 225 1.234615 GCTAAACCAGCCGAAGTGCA 61.235 55.000 0.00 0.00 45.23 4.57
225 226 0.517316 CTAAACCAGCCGAAGTGCAC 59.483 55.000 9.40 9.40 0.00 4.57
226 227 1.225376 TAAACCAGCCGAAGTGCACG 61.225 55.000 12.01 0.00 0.00 5.34
239 240 4.264638 GCACGCGGCAAACAGGTT 62.265 61.111 12.47 0.00 43.97 3.50
240 241 2.411290 CACGCGGCAAACAGGTTT 59.589 55.556 12.47 0.00 0.00 3.27
241 242 1.226831 CACGCGGCAAACAGGTTTT 60.227 52.632 12.47 0.00 0.00 2.43
242 243 0.804156 CACGCGGCAAACAGGTTTTT 60.804 50.000 12.47 0.00 0.00 1.94
272 273 3.793144 GAAGCGCGGCTGTTGGAG 61.793 66.667 8.83 0.00 39.62 3.86
273 274 4.314440 AAGCGCGGCTGTTGGAGA 62.314 61.111 8.83 0.00 39.62 3.71
274 275 3.612247 AAGCGCGGCTGTTGGAGAT 62.612 57.895 8.83 0.00 39.62 2.75
275 276 3.869272 GCGCGGCTGTTGGAGATG 61.869 66.667 8.83 0.00 0.00 2.90
276 277 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
277 278 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
278 279 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
279 280 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
280 281 0.392193 CGGCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
281 282 1.134699 CGGCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
282 283 2.559440 GGCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 0.00 2.18
283 284 2.169352 GGCTGTTGGAGATGCTCTTAGA 59.831 50.000 0.00 0.00 0.00 2.10
284 285 3.369892 GGCTGTTGGAGATGCTCTTAGAA 60.370 47.826 0.00 0.00 0.00 2.10
285 286 4.256920 GCTGTTGGAGATGCTCTTAGAAA 58.743 43.478 0.00 0.00 0.00 2.52
286 287 4.697352 GCTGTTGGAGATGCTCTTAGAAAA 59.303 41.667 0.00 0.00 0.00 2.29
287 288 5.182001 GCTGTTGGAGATGCTCTTAGAAAAA 59.818 40.000 0.00 0.00 0.00 1.94
288 289 6.560253 TGTTGGAGATGCTCTTAGAAAAAC 57.440 37.500 0.00 0.00 0.00 2.43
289 290 6.299141 TGTTGGAGATGCTCTTAGAAAAACT 58.701 36.000 0.00 0.00 0.00 2.66
290 291 6.205464 TGTTGGAGATGCTCTTAGAAAAACTG 59.795 38.462 0.00 0.00 0.00 3.16
291 292 5.869579 TGGAGATGCTCTTAGAAAAACTGT 58.130 37.500 0.00 0.00 0.00 3.55
292 293 6.299141 TGGAGATGCTCTTAGAAAAACTGTT 58.701 36.000 0.00 0.00 0.00 3.16
293 294 7.450074 TGGAGATGCTCTTAGAAAAACTGTTA 58.550 34.615 0.00 0.00 0.00 2.41
294 295 8.103305 TGGAGATGCTCTTAGAAAAACTGTTAT 58.897 33.333 0.00 0.00 0.00 1.89
295 296 8.951243 GGAGATGCTCTTAGAAAAACTGTTATT 58.049 33.333 0.00 0.00 0.00 1.40
296 297 9.766277 GAGATGCTCTTAGAAAAACTGTTATTG 57.234 33.333 0.00 0.00 0.00 1.90
297 298 8.239998 AGATGCTCTTAGAAAAACTGTTATTGC 58.760 33.333 0.00 0.00 0.00 3.56
298 299 7.270757 TGCTCTTAGAAAAACTGTTATTGCA 57.729 32.000 0.00 0.00 0.00 4.08
299 300 7.711846 TGCTCTTAGAAAAACTGTTATTGCAA 58.288 30.769 0.00 0.00 0.00 4.08
300 301 7.647715 TGCTCTTAGAAAAACTGTTATTGCAAC 59.352 33.333 0.00 0.00 0.00 4.17
301 302 7.114953 GCTCTTAGAAAAACTGTTATTGCAACC 59.885 37.037 0.00 0.00 0.00 3.77
302 303 8.232913 TCTTAGAAAAACTGTTATTGCAACCT 57.767 30.769 0.00 0.00 0.00 3.50
303 304 9.344772 TCTTAGAAAAACTGTTATTGCAACCTA 57.655 29.630 0.00 0.00 0.00 3.08
304 305 9.612620 CTTAGAAAAACTGTTATTGCAACCTAG 57.387 33.333 0.00 0.52 0.00 3.02
305 306 7.582667 AGAAAAACTGTTATTGCAACCTAGT 57.417 32.000 0.00 1.21 0.00 2.57
306 307 8.685838 AGAAAAACTGTTATTGCAACCTAGTA 57.314 30.769 0.00 0.00 0.00 1.82
307 308 8.784043 AGAAAAACTGTTATTGCAACCTAGTAG 58.216 33.333 0.00 0.00 0.00 2.57
308 309 8.459911 AAAAACTGTTATTGCAACCTAGTAGT 57.540 30.769 0.00 0.00 0.00 2.73
309 310 9.563748 AAAAACTGTTATTGCAACCTAGTAGTA 57.436 29.630 0.00 0.00 0.00 1.82
310 311 8.543862 AAACTGTTATTGCAACCTAGTAGTAC 57.456 34.615 0.00 0.00 0.00 2.73
311 312 7.477945 ACTGTTATTGCAACCTAGTAGTACT 57.522 36.000 0.00 8.14 0.00 2.73
312 313 8.585471 ACTGTTATTGCAACCTAGTAGTACTA 57.415 34.615 0.00 9.66 0.00 1.82
313 314 8.684520 ACTGTTATTGCAACCTAGTAGTACTAG 58.315 37.037 24.85 24.85 45.93 2.57
322 323 4.881019 CTAGTAGTACTAGGGGTAGCGA 57.119 50.000 24.30 0.00 43.37 4.93
323 324 5.419239 CTAGTAGTACTAGGGGTAGCGAT 57.581 47.826 24.30 0.00 43.37 4.58
324 325 6.537453 CTAGTAGTACTAGGGGTAGCGATA 57.463 45.833 24.30 0.00 43.37 2.92
325 326 5.419239 AGTAGTACTAGGGGTAGCGATAG 57.581 47.826 1.87 1.67 0.00 2.08
326 327 4.843516 AGTAGTACTAGGGGTAGCGATAGT 59.156 45.833 1.87 11.11 39.35 2.12
327 328 4.284829 AGTACTAGGGGTAGCGATAGTC 57.715 50.000 10.02 4.66 39.35 2.59
328 329 3.649981 AGTACTAGGGGTAGCGATAGTCA 59.350 47.826 10.02 0.00 39.35 3.41
329 330 3.810721 ACTAGGGGTAGCGATAGTCAT 57.189 47.619 0.00 0.00 39.35 3.06
330 331 3.688235 ACTAGGGGTAGCGATAGTCATC 58.312 50.000 0.00 0.00 39.35 2.92
331 332 2.677542 AGGGGTAGCGATAGTCATCA 57.322 50.000 0.00 0.00 39.35 3.07
332 333 3.176924 AGGGGTAGCGATAGTCATCAT 57.823 47.619 0.00 0.00 39.35 2.45
333 334 3.511477 AGGGGTAGCGATAGTCATCATT 58.489 45.455 0.00 0.00 39.35 2.57
334 335 3.259374 AGGGGTAGCGATAGTCATCATTG 59.741 47.826 0.00 0.00 39.35 2.82
335 336 2.996621 GGGTAGCGATAGTCATCATTGC 59.003 50.000 0.00 0.00 39.35 3.56
336 337 3.554960 GGGTAGCGATAGTCATCATTGCA 60.555 47.826 0.00 0.00 35.57 4.08
337 338 3.430218 GGTAGCGATAGTCATCATTGCAC 59.570 47.826 0.00 0.00 35.57 4.57
338 339 2.130395 AGCGATAGTCATCATTGCACG 58.870 47.619 0.00 0.00 35.57 5.34
339 340 1.860950 GCGATAGTCATCATTGCACGT 59.139 47.619 0.00 0.00 33.66 4.49
340 341 2.285220 GCGATAGTCATCATTGCACGTT 59.715 45.455 0.00 0.00 33.66 3.99
341 342 3.489416 GCGATAGTCATCATTGCACGTTA 59.511 43.478 0.00 0.00 33.66 3.18
342 343 4.606232 GCGATAGTCATCATTGCACGTTAC 60.606 45.833 0.00 0.00 33.66 2.50
343 344 4.740205 CGATAGTCATCATTGCACGTTACT 59.260 41.667 0.00 0.00 0.00 2.24
344 345 5.108217 CGATAGTCATCATTGCACGTTACTC 60.108 44.000 0.00 0.00 0.00 2.59
345 346 4.193826 AGTCATCATTGCACGTTACTCT 57.806 40.909 0.00 0.00 0.00 3.24
346 347 3.928992 AGTCATCATTGCACGTTACTCTG 59.071 43.478 0.00 0.00 0.00 3.35
347 348 3.926527 GTCATCATTGCACGTTACTCTGA 59.073 43.478 0.00 0.00 0.00 3.27
348 349 4.388773 GTCATCATTGCACGTTACTCTGAA 59.611 41.667 0.00 0.00 0.00 3.02
349 350 4.388773 TCATCATTGCACGTTACTCTGAAC 59.611 41.667 0.00 0.00 0.00 3.18
350 351 3.990092 TCATTGCACGTTACTCTGAACT 58.010 40.909 0.00 0.00 0.00 3.01
351 352 4.377021 TCATTGCACGTTACTCTGAACTT 58.623 39.130 0.00 0.00 0.00 2.66
352 353 4.211164 TCATTGCACGTTACTCTGAACTTG 59.789 41.667 0.00 0.00 33.07 3.16
353 354 2.479837 TGCACGTTACTCTGAACTTGG 58.520 47.619 0.00 0.00 31.17 3.61
354 355 1.798813 GCACGTTACTCTGAACTTGGG 59.201 52.381 0.00 0.00 31.17 4.12
355 356 2.805657 GCACGTTACTCTGAACTTGGGT 60.806 50.000 0.00 0.00 31.17 4.51
356 357 3.553508 GCACGTTACTCTGAACTTGGGTA 60.554 47.826 0.00 0.00 31.17 3.69
357 358 4.624015 CACGTTACTCTGAACTTGGGTAA 58.376 43.478 0.00 0.00 0.00 2.85
358 359 5.051816 CACGTTACTCTGAACTTGGGTAAA 58.948 41.667 0.00 0.00 0.00 2.01
359 360 5.524646 CACGTTACTCTGAACTTGGGTAAAA 59.475 40.000 0.00 0.00 0.00 1.52
360 361 6.204108 CACGTTACTCTGAACTTGGGTAAAAT 59.796 38.462 0.00 0.00 0.00 1.82
361 362 6.769341 ACGTTACTCTGAACTTGGGTAAAATT 59.231 34.615 0.00 0.00 0.00 1.82
362 363 7.041576 ACGTTACTCTGAACTTGGGTAAAATTC 60.042 37.037 0.00 0.00 0.00 2.17
363 364 7.572539 CGTTACTCTGAACTTGGGTAAAATTCC 60.573 40.741 0.00 0.00 0.00 3.01
364 365 5.953571 ACTCTGAACTTGGGTAAAATTCCT 58.046 37.500 0.00 0.00 0.00 3.36
365 366 6.004574 ACTCTGAACTTGGGTAAAATTCCTC 58.995 40.000 0.00 0.00 0.00 3.71
366 367 5.947663 TCTGAACTTGGGTAAAATTCCTCA 58.052 37.500 0.00 0.00 0.00 3.86
367 368 6.552008 TCTGAACTTGGGTAAAATTCCTCAT 58.448 36.000 0.00 0.00 0.00 2.90
368 369 6.434028 TCTGAACTTGGGTAAAATTCCTCATG 59.566 38.462 0.00 0.00 0.00 3.07
369 370 6.074648 TGAACTTGGGTAAAATTCCTCATGT 58.925 36.000 0.00 0.00 0.00 3.21
370 371 5.982890 ACTTGGGTAAAATTCCTCATGTG 57.017 39.130 0.00 0.00 0.00 3.21
371 372 5.640147 ACTTGGGTAAAATTCCTCATGTGA 58.360 37.500 0.00 0.00 0.00 3.58
372 373 6.074648 ACTTGGGTAAAATTCCTCATGTGAA 58.925 36.000 0.00 0.00 0.00 3.18
373 374 6.553100 ACTTGGGTAAAATTCCTCATGTGAAA 59.447 34.615 0.00 0.00 0.00 2.69
374 375 7.235399 ACTTGGGTAAAATTCCTCATGTGAAAT 59.765 33.333 0.00 0.00 0.00 2.17
375 376 8.657387 TTGGGTAAAATTCCTCATGTGAAATA 57.343 30.769 0.00 0.00 0.00 1.40
376 377 8.837099 TGGGTAAAATTCCTCATGTGAAATAT 57.163 30.769 0.00 0.00 0.00 1.28
377 378 9.928618 TGGGTAAAATTCCTCATGTGAAATATA 57.071 29.630 0.00 0.00 0.00 0.86
393 394 8.414003 TGTGAAATATATACCTAGATCATCCGC 58.586 37.037 0.00 0.00 0.00 5.54
394 395 7.591795 GTGAAATATATACCTAGATCATCCGCG 59.408 40.741 0.00 0.00 0.00 6.46
395 396 3.992260 ATATACCTAGATCATCCGCGC 57.008 47.619 0.00 0.00 0.00 6.86
396 397 0.452184 ATACCTAGATCATCCGCGCG 59.548 55.000 25.67 25.67 0.00 6.86
397 398 0.887836 TACCTAGATCATCCGCGCGT 60.888 55.000 29.95 9.79 0.00 6.01
398 399 1.730902 CCTAGATCATCCGCGCGTG 60.731 63.158 29.95 21.40 0.00 5.34
399 400 2.354656 TAGATCATCCGCGCGTGC 60.355 61.111 29.95 11.84 37.91 5.34
400 401 3.132481 TAGATCATCCGCGCGTGCA 62.132 57.895 29.95 12.70 42.97 4.57
401 402 2.420466 TAGATCATCCGCGCGTGCAT 62.420 55.000 29.95 14.59 42.97 3.96
402 403 2.885676 GATCATCCGCGCGTGCATT 61.886 57.895 29.95 10.43 42.97 3.56
403 404 3.172099 ATCATCCGCGCGTGCATTG 62.172 57.895 29.95 17.25 42.97 2.82
404 405 4.164664 CATCCGCGCGTGCATTGT 62.165 61.111 29.95 2.95 42.97 2.71
405 406 2.510464 ATCCGCGCGTGCATTGTA 60.510 55.556 29.95 3.37 42.97 2.41
406 407 2.808958 ATCCGCGCGTGCATTGTAC 61.809 57.895 29.95 0.00 42.97 2.90
407 408 4.514569 CCGCGCGTGCATTGTACC 62.515 66.667 29.95 0.00 42.97 3.34
408 409 4.844065 CGCGCGTGCATTGTACCG 62.844 66.667 24.19 9.97 42.97 4.02
410 411 3.783327 CGCGTGCATTGTACCGCA 61.783 61.111 15.94 5.37 46.02 5.69
411 412 2.558821 GCGTGCATTGTACCGCAA 59.441 55.556 11.68 0.00 45.12 4.85
412 413 1.081774 GCGTGCATTGTACCGCAAA 60.082 52.632 11.68 0.00 45.12 3.68
413 414 0.661780 GCGTGCATTGTACCGCAAAA 60.662 50.000 11.68 0.00 45.12 2.44
414 415 1.975837 CGTGCATTGTACCGCAAAAT 58.024 45.000 3.57 0.00 40.44 1.82
415 416 2.323959 CGTGCATTGTACCGCAAAATT 58.676 42.857 3.57 0.00 40.44 1.82
416 417 2.728839 CGTGCATTGTACCGCAAAATTT 59.271 40.909 3.57 0.00 40.44 1.82
417 418 3.181545 CGTGCATTGTACCGCAAAATTTC 60.182 43.478 3.57 0.00 40.44 2.17
418 419 3.122780 GTGCATTGTACCGCAAAATTTCC 59.877 43.478 3.57 0.00 40.44 3.13
419 420 3.243873 TGCATTGTACCGCAAAATTTCCA 60.244 39.130 0.00 0.00 40.91 3.53
420 421 3.743396 GCATTGTACCGCAAAATTTCCAA 59.257 39.130 0.00 0.00 40.91 3.53
421 422 4.212214 GCATTGTACCGCAAAATTTCCAAA 59.788 37.500 0.00 0.00 40.91 3.28
422 423 5.106752 GCATTGTACCGCAAAATTTCCAAAT 60.107 36.000 0.00 0.00 40.91 2.32
423 424 6.533185 CATTGTACCGCAAAATTTCCAAATC 58.467 36.000 0.00 0.00 40.91 2.17
424 425 5.201713 TGTACCGCAAAATTTCCAAATCA 57.798 34.783 0.00 0.00 0.00 2.57
425 426 5.788450 TGTACCGCAAAATTTCCAAATCAT 58.212 33.333 0.00 0.00 0.00 2.45
426 427 5.636965 TGTACCGCAAAATTTCCAAATCATG 59.363 36.000 0.00 0.00 0.00 3.07
427 428 4.640364 ACCGCAAAATTTCCAAATCATGT 58.360 34.783 0.00 0.00 0.00 3.21
428 429 4.451774 ACCGCAAAATTTCCAAATCATGTG 59.548 37.500 0.00 0.00 0.00 3.21
429 430 4.451774 CCGCAAAATTTCCAAATCATGTGT 59.548 37.500 0.00 0.00 0.00 3.72
430 431 5.636965 CCGCAAAATTTCCAAATCATGTGTA 59.363 36.000 0.00 0.00 0.00 2.90
431 432 6.313411 CCGCAAAATTTCCAAATCATGTGTAT 59.687 34.615 0.00 0.00 0.00 2.29
432 433 7.148440 CCGCAAAATTTCCAAATCATGTGTATT 60.148 33.333 0.00 0.00 0.00 1.89
433 434 7.688989 CGCAAAATTTCCAAATCATGTGTATTG 59.311 33.333 0.00 0.00 0.00 1.90
434 435 7.482428 GCAAAATTTCCAAATCATGTGTATTGC 59.518 33.333 0.00 0.00 0.00 3.56
435 436 7.614124 AAATTTCCAAATCATGTGTATTGCC 57.386 32.000 0.00 0.00 0.00 4.52
436 437 5.735285 TTTCCAAATCATGTGTATTGCCA 57.265 34.783 0.00 0.00 0.00 4.92
437 438 4.717233 TCCAAATCATGTGTATTGCCAC 57.283 40.909 0.00 0.00 35.86 5.01
438 439 3.128415 TCCAAATCATGTGTATTGCCACG 59.872 43.478 0.00 0.00 38.20 4.94
439 440 3.128415 CCAAATCATGTGTATTGCCACGA 59.872 43.478 0.00 0.00 38.20 4.35
440 441 4.380339 CCAAATCATGTGTATTGCCACGAA 60.380 41.667 0.00 0.00 38.20 3.85
441 442 4.621068 AATCATGTGTATTGCCACGAAG 57.379 40.909 0.00 0.00 38.20 3.79
443 444 3.000041 TCATGTGTATTGCCACGAAGTC 59.000 45.455 0.00 0.00 41.61 3.01
444 445 1.803334 TGTGTATTGCCACGAAGTCC 58.197 50.000 0.00 0.00 41.61 3.85
445 446 1.084289 GTGTATTGCCACGAAGTCCC 58.916 55.000 0.00 0.00 41.61 4.46
446 447 0.687920 TGTATTGCCACGAAGTCCCA 59.312 50.000 0.00 0.00 41.61 4.37
447 448 1.084289 GTATTGCCACGAAGTCCCAC 58.916 55.000 0.00 0.00 41.61 4.61
448 449 0.390603 TATTGCCACGAAGTCCCACG 60.391 55.000 0.00 0.00 41.61 4.94
449 450 2.107041 ATTGCCACGAAGTCCCACGA 62.107 55.000 0.00 0.00 41.61 4.35
450 451 2.737376 GCCACGAAGTCCCACGAC 60.737 66.667 0.00 0.00 41.61 4.34
451 452 2.732016 CCACGAAGTCCCACGACA 59.268 61.111 0.00 0.00 41.61 4.35
452 453 1.663702 CCACGAAGTCCCACGACAC 60.664 63.158 0.00 0.00 41.61 3.67
453 454 1.066752 CACGAAGTCCCACGACACA 59.933 57.895 0.00 0.00 41.61 3.72
454 455 0.319555 CACGAAGTCCCACGACACAT 60.320 55.000 0.00 0.00 41.61 3.21
455 456 0.038526 ACGAAGTCCCACGACACATC 60.039 55.000 0.00 0.00 41.87 3.06
456 457 0.243907 CGAAGTCCCACGACACATCT 59.756 55.000 0.00 0.00 41.87 2.90
457 458 1.336887 CGAAGTCCCACGACACATCTT 60.337 52.381 0.00 0.00 41.87 2.40
458 459 2.094906 CGAAGTCCCACGACACATCTTA 60.095 50.000 0.00 0.00 41.87 2.10
459 460 3.428999 CGAAGTCCCACGACACATCTTAT 60.429 47.826 0.00 0.00 41.87 1.73
460 461 3.802948 AGTCCCACGACACATCTTATC 57.197 47.619 0.00 0.00 41.87 1.75
461 462 2.431057 AGTCCCACGACACATCTTATCC 59.569 50.000 0.00 0.00 41.87 2.59
462 463 2.167693 GTCCCACGACACATCTTATCCA 59.832 50.000 0.00 0.00 38.99 3.41
463 464 2.835156 TCCCACGACACATCTTATCCAA 59.165 45.455 0.00 0.00 0.00 3.53
464 465 3.262151 TCCCACGACACATCTTATCCAAA 59.738 43.478 0.00 0.00 0.00 3.28
465 466 4.006989 CCCACGACACATCTTATCCAAAA 58.993 43.478 0.00 0.00 0.00 2.44
466 467 4.457603 CCCACGACACATCTTATCCAAAAA 59.542 41.667 0.00 0.00 0.00 1.94
499 500 2.673976 CAAAATGGCTTTTGTGCTGC 57.326 45.000 11.54 0.00 44.03 5.25
501 502 2.328819 AAATGGCTTTTGTGCTGCAA 57.671 40.000 2.77 0.00 34.87 4.08
505 506 1.753649 TGGCTTTTGTGCTGCAAACTA 59.246 42.857 2.77 0.00 45.70 2.24
538 539 2.639065 TGAACCTGTTTCGCTGACTTT 58.361 42.857 0.00 0.00 36.97 2.66
540 541 2.325583 ACCTGTTTCGCTGACTTTCA 57.674 45.000 0.00 0.00 0.00 2.69
576 577 6.313519 TCCTAGTTGGAGAATATTGTGCTT 57.686 37.500 5.71 0.00 40.56 3.91
584 585 4.035675 GGAGAATATTGTGCTTGTGCCTAC 59.964 45.833 0.00 0.00 38.71 3.18
634 635 2.920490 GTTCGCAAAATGTGTGTGTGTT 59.080 40.909 0.00 0.00 38.94 3.32
635 636 2.524034 TCGCAAAATGTGTGTGTGTTG 58.476 42.857 0.00 0.00 38.94 3.33
636 637 2.095008 TCGCAAAATGTGTGTGTGTTGT 60.095 40.909 0.00 0.00 38.94 3.32
638 639 2.992543 GCAAAATGTGTGTGTGTTGTGT 59.007 40.909 0.00 0.00 0.00 3.72
639 640 3.181532 GCAAAATGTGTGTGTGTTGTGTG 60.182 43.478 0.00 0.00 0.00 3.82
640 641 3.932545 AAATGTGTGTGTGTTGTGTGT 57.067 38.095 0.00 0.00 0.00 3.72
650 655 1.132262 GTGTTGTGTGTGTGGTCAAGG 59.868 52.381 0.00 0.00 0.00 3.61
654 659 1.152984 TGTGTGTGGTCAAGGCCAG 60.153 57.895 5.01 0.00 39.53 4.85
678 683 2.923605 GCAACTCATTCGCTTTGCACAT 60.924 45.455 0.40 0.00 43.16 3.21
702 711 1.816074 TAAAAGCCAAGCCCAGTACG 58.184 50.000 0.00 0.00 0.00 3.67
718 727 1.775039 TACGCCCCGTCGTCTTATCG 61.775 60.000 0.00 0.00 43.15 2.92
826 850 3.649986 ACACGCGCAGACCAAAGC 61.650 61.111 5.73 0.00 0.00 3.51
948 972 4.916041 TCTTGAATCTTGAGACCACCAT 57.084 40.909 0.00 0.00 0.00 3.55
964 992 1.061812 ACCATAGCCTCATCCCAGTCT 60.062 52.381 0.00 0.00 0.00 3.24
1123 1151 4.492160 GCTCCGGCATCGTCGACA 62.492 66.667 17.16 3.13 38.54 4.35
1357 1385 5.919141 GGTAAATATCTGCACAGTACTACGG 59.081 44.000 0.00 0.00 0.00 4.02
1578 1606 4.147449 CCATGGCGACGCTGGAGA 62.147 66.667 20.31 0.96 37.83 3.71
1579 1607 2.584418 CATGGCGACGCTGGAGAG 60.584 66.667 20.77 0.50 0.00 3.20
1861 1889 2.029518 CAGTCCAGCTGCGTGACA 59.970 61.111 19.58 0.00 38.52 3.58
1871 1899 1.893335 TGCGTGACAATGCAGCAGT 60.893 52.632 0.00 0.00 43.46 4.40
2002 2051 4.373116 GACACCTTCGGCCAGCGA 62.373 66.667 2.24 0.00 0.00 4.93
2035 2084 3.702048 GGCGTCACCAGGTAGCCA 61.702 66.667 21.77 0.00 46.48 4.75
2079 2136 1.728068 GCATTGCATGTCATTTGCCA 58.272 45.000 3.15 0.00 39.39 4.92
2085 2142 1.479323 GCATGTCATTTGCCACCATCT 59.521 47.619 0.00 0.00 33.95 2.90
2286 2369 9.252635 AGTACCATTTTAGTTACTAGCAGTAGT 57.747 33.333 0.00 0.00 42.49 2.73
2290 2373 8.195436 CCATTTTAGTTACTAGCAGTAGTAGCA 58.805 37.037 8.89 0.00 42.53 3.49
2291 2374 9.239002 CATTTTAGTTACTAGCAGTAGTAGCAG 57.761 37.037 8.89 0.00 42.53 4.24
2292 2375 7.934855 TTTAGTTACTAGCAGTAGTAGCAGT 57.065 36.000 8.89 0.00 42.53 4.40
2293 2376 9.453572 TTTTAGTTACTAGCAGTAGTAGCAGTA 57.546 33.333 8.89 0.00 42.53 2.74
2294 2377 6.923928 AGTTACTAGCAGTAGTAGCAGTAC 57.076 41.667 8.89 0.00 42.53 2.73
2295 2378 5.523188 AGTTACTAGCAGTAGTAGCAGTACG 59.477 44.000 8.89 0.00 42.53 3.67
2339 2434 3.254166 GTGATGTGATTGCACTTCCAAGT 59.746 43.478 0.00 0.00 44.32 3.16
2340 2435 3.503363 TGATGTGATTGCACTTCCAAGTC 59.497 43.478 0.00 0.00 44.32 3.01
2341 2436 2.929641 TGTGATTGCACTTCCAAGTCA 58.070 42.857 0.00 0.00 45.36 3.41
2342 2437 3.286353 TGTGATTGCACTTCCAAGTCAA 58.714 40.909 0.00 6.73 45.36 3.18
2343 2438 3.316029 TGTGATTGCACTTCCAAGTCAAG 59.684 43.478 0.00 0.00 45.36 3.02
2381 2476 2.288640 GCTCTTTGCATGTCCTTTGCTT 60.289 45.455 0.00 0.00 40.77 3.91
2418 2513 0.098905 TCGATCGTGCTTCTTCTCGG 59.901 55.000 15.94 0.00 0.00 4.63
2508 2609 4.685575 GCTTAATCTTGCTGGGATCAGTCT 60.686 45.833 0.00 0.00 42.78 3.24
2511 2612 1.277273 TCTTGCTGGGATCAGTCTGTG 59.723 52.381 0.00 0.00 42.78 3.66
2522 2623 4.509600 GGATCAGTCTGTGCAAATACTAGC 59.490 45.833 0.00 0.00 0.00 3.42
2534 2635 4.779475 ACTAGCGCTTGTGCTTGT 57.221 50.000 23.51 14.64 44.46 3.16
2539 2640 2.119671 AGCGCTTGTGCTTGTTTTAC 57.880 45.000 2.64 0.00 44.46 2.01
2702 2806 1.443828 GGCGATCACCTCCTTCTCC 59.556 63.158 0.00 0.00 0.00 3.71
2711 2815 2.776536 CACCTCCTTCTCCATCCATCTT 59.223 50.000 0.00 0.00 0.00 2.40
2714 2818 2.961741 CTCCTTCTCCATCCATCTTCGA 59.038 50.000 0.00 0.00 0.00 3.71
2717 2821 3.323115 CCTTCTCCATCCATCTTCGATGA 59.677 47.826 3.19 3.19 39.64 2.92
2720 2824 3.706086 TCTCCATCCATCTTCGATGAACA 59.294 43.478 4.98 0.00 39.64 3.18
2721 2825 4.346127 TCTCCATCCATCTTCGATGAACAT 59.654 41.667 4.98 0.00 39.64 2.71
2722 2826 5.039920 TCCATCCATCTTCGATGAACATT 57.960 39.130 4.98 0.00 39.64 2.71
2723 2827 4.818005 TCCATCCATCTTCGATGAACATTG 59.182 41.667 4.98 0.00 39.64 2.82
2724 2828 4.534168 CATCCATCTTCGATGAACATTGC 58.466 43.478 4.98 0.00 39.64 3.56
2725 2829 3.608796 TCCATCTTCGATGAACATTGCA 58.391 40.909 4.98 0.00 0.00 4.08
2726 2830 3.624410 TCCATCTTCGATGAACATTGCAG 59.376 43.478 4.98 0.00 0.00 4.41
2727 2831 3.360533 CATCTTCGATGAACATTGCAGC 58.639 45.455 4.98 0.00 0.00 5.25
2728 2832 2.425539 TCTTCGATGAACATTGCAGCA 58.574 42.857 0.00 0.00 0.00 4.41
2729 2833 3.011818 TCTTCGATGAACATTGCAGCAT 58.988 40.909 0.00 0.00 0.00 3.79
2730 2834 2.836479 TCGATGAACATTGCAGCATG 57.164 45.000 0.00 0.00 40.87 4.06
2731 2835 2.086094 TCGATGAACATTGCAGCATGT 58.914 42.857 0.00 0.00 39.31 3.21
2732 2836 2.488937 TCGATGAACATTGCAGCATGTT 59.511 40.909 15.03 15.03 42.96 2.71
2744 2848 3.243805 TGCAGCATGTTTACATTGCTTGT 60.244 39.130 16.27 0.00 39.54 3.16
2745 2849 3.742369 GCAGCATGTTTACATTGCTTGTT 59.258 39.130 13.44 0.00 38.06 2.83
2746 2850 4.211794 GCAGCATGTTTACATTGCTTGTTT 59.788 37.500 13.44 0.00 38.06 2.83
2747 2851 5.672051 CAGCATGTTTACATTGCTTGTTTG 58.328 37.500 13.44 4.37 39.87 2.93
2748 2852 4.211794 AGCATGTTTACATTGCTTGTTTGC 59.788 37.500 11.45 3.65 39.87 3.68
2749 2853 4.025061 GCATGTTTACATTGCTTGTTTGCA 60.025 37.500 0.00 0.00 39.87 4.08
2750 2854 5.334260 GCATGTTTACATTGCTTGTTTGCAT 60.334 36.000 0.00 0.00 42.96 3.96
2751 2855 5.903764 TGTTTACATTGCTTGTTTGCATC 57.096 34.783 0.00 0.00 42.96 3.91
2752 2856 5.354767 TGTTTACATTGCTTGTTTGCATCA 58.645 33.333 0.00 0.00 42.96 3.07
2753 2857 5.814188 TGTTTACATTGCTTGTTTGCATCAA 59.186 32.000 0.00 0.00 42.96 2.57
2754 2858 6.314648 TGTTTACATTGCTTGTTTGCATCAAA 59.685 30.769 6.36 0.00 42.96 2.69
2755 2859 6.915544 TTACATTGCTTGTTTGCATCAAAA 57.084 29.167 6.36 0.87 42.96 2.44
2756 2860 5.814764 ACATTGCTTGTTTGCATCAAAAA 57.185 30.435 6.36 5.03 42.96 1.94
2783 2887 0.239082 TGCTTGCTTGCTTGTGATCG 59.761 50.000 3.47 0.00 0.00 3.69
2784 2888 0.455633 GCTTGCTTGCTTGTGATCGG 60.456 55.000 0.00 0.00 0.00 4.18
2792 2896 3.885724 TGCTTGTGATCGGAATGTAGA 57.114 42.857 0.00 0.00 0.00 2.59
2801 2905 5.460419 GTGATCGGAATGTAGACAGTGATTC 59.540 44.000 0.00 0.00 0.00 2.52
2805 2909 5.039984 CGGAATGTAGACAGTGATTCTGAG 58.960 45.833 0.00 0.00 46.27 3.35
2810 2914 5.798132 TGTAGACAGTGATTCTGAGCATTT 58.202 37.500 0.00 0.00 46.27 2.32
2887 2994 0.905357 ACATGACCAGGCAGGAGTAC 59.095 55.000 1.67 0.00 41.22 2.73
2926 3035 3.004734 GGTACATAATCACATGCTTGCCC 59.995 47.826 0.00 0.00 0.00 5.36
2927 3036 3.022557 ACATAATCACATGCTTGCCCT 57.977 42.857 0.00 0.00 0.00 5.19
2928 3037 2.691526 ACATAATCACATGCTTGCCCTG 59.308 45.455 0.00 0.00 0.00 4.45
2930 3039 1.927487 AATCACATGCTTGCCCTGAA 58.073 45.000 0.00 0.00 0.00 3.02
2931 3040 2.154567 ATCACATGCTTGCCCTGAAT 57.845 45.000 0.00 0.00 0.00 2.57
2932 3041 1.466856 TCACATGCTTGCCCTGAATC 58.533 50.000 0.00 0.00 0.00 2.52
2934 3043 0.333993 ACATGCTTGCCCTGAATCCT 59.666 50.000 0.00 0.00 0.00 3.24
2936 3045 0.106318 ATGCTTGCCCTGAATCCTCC 60.106 55.000 0.00 0.00 0.00 4.30
2942 3051 1.207791 GCCCTGAATCCTCCTGAGAA 58.792 55.000 0.00 0.00 0.00 2.87
2947 3056 4.643784 CCCTGAATCCTCCTGAGAAAAATG 59.356 45.833 0.00 0.00 0.00 2.32
2952 3061 4.038271 TCCTCCTGAGAAAAATGTGCAT 57.962 40.909 0.00 0.00 0.00 3.96
2965 3074 1.369689 GTGCATTCGATCGCATGGC 60.370 57.895 25.36 18.39 40.89 4.40
3184 3304 2.175202 TGCCGCCATTAATCAGGTTTT 58.825 42.857 0.00 0.00 0.00 2.43
3339 3483 0.601841 CACGGTTTAAGGACGCAGGT 60.602 55.000 0.00 0.00 0.00 4.00
3377 3521 5.835280 TGATCATAACCTCTGATGTAGCTCA 59.165 40.000 0.00 0.00 33.56 4.26
3385 3529 4.377897 CTCTGATGTAGCTCAATGATGCA 58.622 43.478 0.00 0.00 0.00 3.96
3433 3577 0.179137 TGAACGTAGCATCGCTCTGG 60.179 55.000 0.00 0.00 40.44 3.86
3456 3600 2.914695 TTCTTTGCATGCTTTTGGCT 57.085 40.000 20.33 0.00 42.39 4.75
3651 3796 1.288127 GGCTGCTGTTTGAAGCTGG 59.712 57.895 0.00 0.00 46.67 4.85
3652 3797 1.288127 GCTGCTGTTTGAAGCTGGG 59.712 57.895 0.00 0.00 44.07 4.45
3653 3798 1.458639 GCTGCTGTTTGAAGCTGGGT 61.459 55.000 0.00 0.00 44.07 4.51
3680 3825 3.003275 GTGTGTGTTTGATCGTTGGATGT 59.997 43.478 0.00 0.00 31.51 3.06
4000 4149 2.286523 CCTGGGCCTTCTGTCGAGT 61.287 63.158 4.53 0.00 0.00 4.18
4357 4512 4.142138 ACGAGGAGATAGCAAGATCGTTTT 60.142 41.667 0.00 0.00 38.65 2.43
4375 4530 4.390909 CGTTTTACTAGGGCTGGTTACTTG 59.609 45.833 0.00 0.00 0.00 3.16
4411 4566 4.062991 CGTTAGCAAGGAACTGTAAGGTT 58.937 43.478 0.00 0.00 40.86 3.50
4422 4578 7.459234 AGGAACTGTAAGGTTGTTTATTAGCT 58.541 34.615 0.00 0.00 39.30 3.32
4464 4620 2.441532 GCATGCATCTGCCTGGGT 60.442 61.111 14.21 0.00 41.18 4.51
4509 4665 1.878088 GTCTGGGACGAAGGGTTTTTC 59.122 52.381 0.00 0.00 0.00 2.29
4611 4770 2.458620 GGTAGTGGTAGCTCCTGTCTT 58.541 52.381 0.00 0.00 37.07 3.01
4631 4790 5.872070 GTCTTCAGACCTCCTAACTTTCATG 59.128 44.000 0.00 0.00 39.07 3.07
4643 4802 6.928492 TCCTAACTTTCATGAAACCAAAATGC 59.072 34.615 16.91 0.00 0.00 3.56
4646 4805 6.165700 ACTTTCATGAAACCAAAATGCTCT 57.834 33.333 16.91 0.00 0.00 4.09
4719 4878 3.225940 CTTTCTGGGGTTCTCTTTGCTT 58.774 45.455 0.00 0.00 0.00 3.91
4720 4879 3.312736 TTCTGGGGTTCTCTTTGCTTT 57.687 42.857 0.00 0.00 0.00 3.51
4722 4881 1.000171 CTGGGGTTCTCTTTGCTTTGC 60.000 52.381 0.00 0.00 0.00 3.68
4723 4882 1.332195 GGGGTTCTCTTTGCTTTGCT 58.668 50.000 0.00 0.00 0.00 3.91
4724 4883 1.270826 GGGGTTCTCTTTGCTTTGCTC 59.729 52.381 0.00 0.00 0.00 4.26
4725 4884 1.068954 GGGTTCTCTTTGCTTTGCTCG 60.069 52.381 0.00 0.00 0.00 5.03
4726 4885 1.068954 GGTTCTCTTTGCTTTGCTCGG 60.069 52.381 0.00 0.00 0.00 4.63
4727 4886 1.068954 GTTCTCTTTGCTTTGCTCGGG 60.069 52.381 0.00 0.00 0.00 5.14
4728 4887 1.211190 CTCTTTGCTTTGCTCGGGC 59.789 57.895 0.00 0.00 39.26 6.13
4729 4888 1.228245 TCTTTGCTTTGCTCGGGCT 60.228 52.632 9.62 0.00 39.59 5.19
4730 4889 0.823356 TCTTTGCTTTGCTCGGGCTT 60.823 50.000 9.62 0.00 39.59 4.35
4802 4961 5.652994 AAGCACTGTTTTGACCTTTTGTA 57.347 34.783 0.00 0.00 0.00 2.41
4889 5048 1.903877 AACATCTCTGGCGTCTGGGG 61.904 60.000 0.00 0.00 0.00 4.96
4928 5087 2.363795 CCTGGCGTCTGGTCCCTA 60.364 66.667 4.52 0.00 0.00 3.53
4976 5135 2.113139 CTGACGTGGCAAAGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
5088 5247 5.735285 TCATCTGCGAGGATAAGATCATT 57.265 39.130 0.00 0.00 0.00 2.57
5137 5296 1.153369 CGATTGGCACTGGATCCGT 60.153 57.895 7.39 5.31 0.00 4.69
5241 5400 2.239907 GGAGTTGGAGTGGCCTAGATTT 59.760 50.000 3.32 0.00 37.63 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.212888 AGTTGATGAATAAAAGTCCATGCC 57.787 37.500 0.00 0.00 0.00 4.40
1 2 7.092716 ACAAGTTGATGAATAAAAGTCCATGC 58.907 34.615 10.54 0.00 0.00 4.06
2 3 9.480053 AAACAAGTTGATGAATAAAAGTCCATG 57.520 29.630 10.54 0.00 0.00 3.66
17 18 9.814899 TGTGAAAATTGACATAAACAAGTTGAT 57.185 25.926 10.54 0.00 36.08 2.57
18 19 9.814899 ATGTGAAAATTGACATAAACAAGTTGA 57.185 25.926 10.54 0.00 33.22 3.18
19 20 9.852481 CATGTGAAAATTGACATAAACAAGTTG 57.148 29.630 0.00 0.00 33.22 3.16
20 21 9.598517 ACATGTGAAAATTGACATAAACAAGTT 57.401 25.926 0.00 0.00 33.22 2.66
21 22 9.598517 AACATGTGAAAATTGACATAAACAAGT 57.401 25.926 0.00 0.00 33.22 3.16
23 24 9.591792 TGAACATGTGAAAATTGACATAAACAA 57.408 25.926 0.00 0.00 33.22 2.83
24 25 9.761504 ATGAACATGTGAAAATTGACATAAACA 57.238 25.926 0.00 0.81 33.22 2.83
27 28 8.710551 GCAATGAACATGTGAAAATTGACATAA 58.289 29.630 19.32 0.00 33.22 1.90
28 29 7.871463 TGCAATGAACATGTGAAAATTGACATA 59.129 29.630 19.32 6.51 33.22 2.29
29 30 6.706716 TGCAATGAACATGTGAAAATTGACAT 59.293 30.769 19.32 0.00 35.36 3.06
30 31 6.047231 TGCAATGAACATGTGAAAATTGACA 58.953 32.000 19.32 15.07 0.00 3.58
31 32 6.528014 TGCAATGAACATGTGAAAATTGAC 57.472 33.333 19.32 13.56 0.00 3.18
32 33 7.731882 AATGCAATGAACATGTGAAAATTGA 57.268 28.000 19.32 10.04 0.00 2.57
33 34 8.686418 CAAAATGCAATGAACATGTGAAAATTG 58.314 29.630 0.00 8.65 0.00 2.32
34 35 8.622157 TCAAAATGCAATGAACATGTGAAAATT 58.378 25.926 0.00 0.00 0.00 1.82
35 36 8.155821 TCAAAATGCAATGAACATGTGAAAAT 57.844 26.923 0.00 0.00 0.00 1.82
36 37 7.549615 TCAAAATGCAATGAACATGTGAAAA 57.450 28.000 0.00 0.00 0.00 2.29
37 38 7.441458 TCATCAAAATGCAATGAACATGTGAAA 59.559 29.630 0.00 0.00 30.54 2.69
38 39 6.929606 TCATCAAAATGCAATGAACATGTGAA 59.070 30.769 0.00 0.00 30.54 3.18
39 40 6.456501 TCATCAAAATGCAATGAACATGTGA 58.543 32.000 0.00 0.00 32.58 3.58
40 41 6.713792 TCATCAAAATGCAATGAACATGTG 57.286 33.333 0.00 0.00 32.58 3.21
41 42 7.389330 ACATTCATCAAAATGCAATGAACATGT 59.611 29.630 11.86 10.71 40.95 3.21
42 43 7.747888 ACATTCATCAAAATGCAATGAACATG 58.252 30.769 11.86 10.19 40.95 3.21
43 44 7.915293 ACATTCATCAAAATGCAATGAACAT 57.085 28.000 11.86 2.56 40.95 2.71
44 45 7.731882 AACATTCATCAAAATGCAATGAACA 57.268 28.000 11.86 0.00 40.95 3.18
45 46 8.283992 TGAAACATTCATCAAAATGCAATGAAC 58.716 29.630 11.86 2.09 40.95 3.18
46 47 8.379457 TGAAACATTCATCAAAATGCAATGAA 57.621 26.923 11.98 11.98 41.99 2.57
47 48 7.964604 TGAAACATTCATCAAAATGCAATGA 57.035 28.000 0.00 0.00 39.72 2.57
48 49 8.897809 GTTTGAAACATTCATCAAAATGCAATG 58.102 29.630 2.68 0.00 44.52 2.82
49 50 8.842280 AGTTTGAAACATTCATCAAAATGCAAT 58.158 25.926 11.02 0.00 44.52 3.56
50 51 8.211116 AGTTTGAAACATTCATCAAAATGCAA 57.789 26.923 11.02 0.00 44.52 4.08
51 52 7.494952 TGAGTTTGAAACATTCATCAAAATGCA 59.505 29.630 11.02 0.00 44.52 3.96
52 53 7.853524 TGAGTTTGAAACATTCATCAAAATGC 58.146 30.769 11.02 0.64 44.52 3.56
83 84 6.596309 TTAACATATGTGGCATTTTGGACA 57.404 33.333 9.63 0.00 0.00 4.02
84 85 7.465781 GCATTTAACATATGTGGCATTTTGGAC 60.466 37.037 9.63 0.00 0.00 4.02
85 86 6.538021 GCATTTAACATATGTGGCATTTTGGA 59.462 34.615 9.63 0.00 0.00 3.53
86 87 6.238429 GGCATTTAACATATGTGGCATTTTGG 60.238 38.462 9.63 0.00 35.67 3.28
87 88 6.238429 GGGCATTTAACATATGTGGCATTTTG 60.238 38.462 9.63 3.03 37.12 2.44
88 89 5.821995 GGGCATTTAACATATGTGGCATTTT 59.178 36.000 9.63 0.00 37.12 1.82
89 90 5.367302 GGGCATTTAACATATGTGGCATTT 58.633 37.500 9.63 0.00 37.12 2.32
90 91 4.501229 CGGGCATTTAACATATGTGGCATT 60.501 41.667 9.63 0.00 37.12 3.56
91 92 3.005684 CGGGCATTTAACATATGTGGCAT 59.994 43.478 9.63 0.00 37.12 4.40
92 93 2.360483 CGGGCATTTAACATATGTGGCA 59.640 45.455 9.63 0.00 37.12 4.92
93 94 2.288152 CCGGGCATTTAACATATGTGGC 60.288 50.000 9.63 8.62 34.95 5.01
94 95 2.288152 GCCGGGCATTTAACATATGTGG 60.288 50.000 15.62 3.95 0.00 4.17
95 96 2.604373 CGCCGGGCATTTAACATATGTG 60.604 50.000 20.71 0.00 0.00 3.21
96 97 1.606668 CGCCGGGCATTTAACATATGT 59.393 47.619 20.71 1.41 0.00 2.29
97 98 1.876799 TCGCCGGGCATTTAACATATG 59.123 47.619 20.71 0.00 0.00 1.78
98 99 2.151202 CTCGCCGGGCATTTAACATAT 58.849 47.619 20.71 0.00 0.00 1.78
99 100 1.134340 ACTCGCCGGGCATTTAACATA 60.134 47.619 20.71 0.00 0.00 2.29
100 101 0.393808 ACTCGCCGGGCATTTAACAT 60.394 50.000 20.71 0.00 0.00 2.71
101 102 1.003112 ACTCGCCGGGCATTTAACA 60.003 52.632 20.71 0.00 0.00 2.41
102 103 1.719709 GACTCGCCGGGCATTTAAC 59.280 57.895 20.71 1.08 0.00 2.01
103 104 1.812093 CGACTCGCCGGGCATTTAA 60.812 57.895 20.71 0.00 0.00 1.52
104 105 2.202824 CGACTCGCCGGGCATTTA 60.203 61.111 20.71 0.00 0.00 1.40
116 117 1.683790 AAATACAGCACGCGCGACTC 61.684 55.000 39.36 23.22 45.49 3.36
117 118 1.289109 AAAATACAGCACGCGCGACT 61.289 50.000 39.36 28.95 45.49 4.18
118 119 0.452122 AAAAATACAGCACGCGCGAC 60.452 50.000 39.36 27.09 45.49 5.19
119 120 0.451957 CAAAAATACAGCACGCGCGA 60.452 50.000 39.36 14.00 45.49 5.87
120 121 1.972801 CAAAAATACAGCACGCGCG 59.027 52.632 30.96 30.96 45.49 6.86
121 122 1.696083 GCAAAAATACAGCACGCGC 59.304 52.632 5.73 0.00 38.99 6.86
122 123 1.972801 CGCAAAAATACAGCACGCG 59.027 52.632 3.53 3.53 34.89 6.01
123 124 1.696083 GCGCAAAAATACAGCACGC 59.304 52.632 0.30 0.00 37.93 5.34
124 125 1.972801 CGCGCAAAAATACAGCACG 59.027 52.632 8.75 0.00 0.00 5.34
125 126 0.729140 AGCGCGCAAAAATACAGCAC 60.729 50.000 35.10 0.00 0.00 4.40
126 127 0.728803 CAGCGCGCAAAAATACAGCA 60.729 50.000 35.10 0.00 0.00 4.41
127 128 1.983160 CAGCGCGCAAAAATACAGC 59.017 52.632 35.10 0.00 0.00 4.40
128 129 0.454957 AGCAGCGCGCAAAAATACAG 60.455 50.000 35.10 11.53 46.13 2.74
129 130 0.728803 CAGCAGCGCGCAAAAATACA 60.729 50.000 35.10 0.00 46.13 2.29
130 131 1.405469 CCAGCAGCGCGCAAAAATAC 61.405 55.000 35.10 13.50 46.13 1.89
131 132 1.154054 CCAGCAGCGCGCAAAAATA 60.154 52.632 35.10 0.00 46.13 1.40
132 133 2.431260 CCAGCAGCGCGCAAAAAT 60.431 55.556 35.10 9.38 46.13 1.82
133 134 3.541093 CTCCAGCAGCGCGCAAAAA 62.541 57.895 35.10 12.17 46.13 1.94
134 135 4.029186 CTCCAGCAGCGCGCAAAA 62.029 61.111 35.10 11.03 46.13 2.44
155 156 3.947255 CTATAATGCAGCGCGCGCG 62.947 63.158 45.73 45.73 46.97 6.86
156 157 2.202096 CTATAATGCAGCGCGCGC 60.202 61.111 45.10 45.10 46.97 6.86
157 158 2.202096 GCTATAATGCAGCGCGCG 60.202 61.111 28.44 28.44 46.97 6.86
162 163 2.174349 GCCGCGCTATAATGCAGC 59.826 61.111 5.56 0.00 35.61 5.25
163 164 1.494628 CAGCCGCGCTATAATGCAG 59.505 57.895 5.56 0.00 36.40 4.41
164 165 2.606961 GCAGCCGCGCTATAATGCA 61.607 57.895 5.56 0.00 36.40 3.96
165 166 2.174349 GCAGCCGCGCTATAATGC 59.826 61.111 5.56 4.97 36.40 3.56
166 167 1.494628 CAGCAGCCGCGCTATAATG 59.505 57.895 5.56 0.00 45.49 1.90
167 168 1.669115 CCAGCAGCCGCGCTATAAT 60.669 57.895 5.56 0.00 45.49 1.28
168 169 2.280119 CCAGCAGCCGCGCTATAA 60.280 61.111 5.56 0.00 45.49 0.98
169 170 3.212906 CTCCAGCAGCCGCGCTATA 62.213 63.158 5.56 1.56 45.49 1.31
170 171 4.598894 CTCCAGCAGCCGCGCTAT 62.599 66.667 5.56 0.00 45.49 2.97
198 199 3.849953 GCTGGTTTAGCGCGTCCG 61.850 66.667 8.43 1.88 43.63 4.79
206 207 0.517316 GTGCACTTCGGCTGGTTTAG 59.483 55.000 10.32 0.00 34.04 1.85
207 208 1.225376 CGTGCACTTCGGCTGGTTTA 61.225 55.000 16.19 0.00 34.04 2.01
208 209 2.542907 CGTGCACTTCGGCTGGTTT 61.543 57.895 16.19 0.00 34.04 3.27
209 210 2.972505 CGTGCACTTCGGCTGGTT 60.973 61.111 16.19 0.00 34.04 3.67
222 223 3.766496 AAACCTGTTTGCCGCGTGC 62.766 57.895 4.92 9.16 41.77 5.34
223 224 0.804156 AAAAACCTGTTTGCCGCGTG 60.804 50.000 4.92 0.00 32.36 5.34
224 225 1.513622 AAAAACCTGTTTGCCGCGT 59.486 47.368 4.92 0.00 32.36 6.01
225 226 4.411136 AAAAACCTGTTTGCCGCG 57.589 50.000 0.00 0.00 32.36 6.46
255 256 3.793144 CTCCAACAGCCGCGCTTC 61.793 66.667 5.56 0.00 36.40 3.86
256 257 3.612247 ATCTCCAACAGCCGCGCTT 62.612 57.895 5.56 0.00 36.40 4.68
257 258 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
258 259 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
259 260 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
260 261 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
261 262 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
272 273 8.023128 TGCAATAACAGTTTTTCTAAGAGCATC 58.977 33.333 0.00 0.00 0.00 3.91
273 274 7.885297 TGCAATAACAGTTTTTCTAAGAGCAT 58.115 30.769 0.00 0.00 0.00 3.79
274 275 7.270757 TGCAATAACAGTTTTTCTAAGAGCA 57.729 32.000 0.00 0.00 0.00 4.26
275 276 7.114953 GGTTGCAATAACAGTTTTTCTAAGAGC 59.885 37.037 0.59 0.00 0.00 4.09
276 277 8.352942 AGGTTGCAATAACAGTTTTTCTAAGAG 58.647 33.333 0.59 0.00 0.00 2.85
277 278 8.232913 AGGTTGCAATAACAGTTTTTCTAAGA 57.767 30.769 0.59 0.00 0.00 2.10
278 279 9.612620 CTAGGTTGCAATAACAGTTTTTCTAAG 57.387 33.333 0.59 0.00 0.00 2.18
279 280 9.127277 ACTAGGTTGCAATAACAGTTTTTCTAA 57.873 29.630 0.59 0.00 0.00 2.10
280 281 8.685838 ACTAGGTTGCAATAACAGTTTTTCTA 57.314 30.769 0.59 0.00 0.00 2.10
281 282 7.582667 ACTAGGTTGCAATAACAGTTTTTCT 57.417 32.000 0.59 0.00 0.00 2.52
282 283 8.565416 ACTACTAGGTTGCAATAACAGTTTTTC 58.435 33.333 0.59 0.00 0.00 2.29
283 284 8.459911 ACTACTAGGTTGCAATAACAGTTTTT 57.540 30.769 0.59 0.00 0.00 1.94
284 285 8.996271 GTACTACTAGGTTGCAATAACAGTTTT 58.004 33.333 0.59 0.00 0.00 2.43
285 286 8.373220 AGTACTACTAGGTTGCAATAACAGTTT 58.627 33.333 0.59 0.00 0.00 2.66
286 287 7.904205 AGTACTACTAGGTTGCAATAACAGTT 58.096 34.615 0.59 0.00 0.00 3.16
287 288 7.477945 AGTACTACTAGGTTGCAATAACAGT 57.522 36.000 0.59 6.79 0.00 3.55
301 302 4.881019 TCGCTACCCCTAGTACTACTAG 57.119 50.000 14.28 14.28 45.93 2.57
302 303 6.019748 ACTATCGCTACCCCTAGTACTACTA 58.980 44.000 0.00 0.00 0.00 1.82
303 304 4.843516 ACTATCGCTACCCCTAGTACTACT 59.156 45.833 0.00 0.00 0.00 2.57
304 305 5.159273 ACTATCGCTACCCCTAGTACTAC 57.841 47.826 0.00 0.00 0.00 2.73
305 306 4.840680 TGACTATCGCTACCCCTAGTACTA 59.159 45.833 1.89 1.89 0.00 1.82
306 307 3.649981 TGACTATCGCTACCCCTAGTACT 59.350 47.826 0.00 0.00 0.00 2.73
307 308 4.013267 TGACTATCGCTACCCCTAGTAC 57.987 50.000 0.00 0.00 0.00 2.73
308 309 4.287845 TGATGACTATCGCTACCCCTAGTA 59.712 45.833 0.00 0.00 36.04 1.82
309 310 3.074094 TGATGACTATCGCTACCCCTAGT 59.926 47.826 0.00 0.00 36.04 2.57
310 311 3.687125 TGATGACTATCGCTACCCCTAG 58.313 50.000 0.00 0.00 36.04 3.02
311 312 3.801307 TGATGACTATCGCTACCCCTA 57.199 47.619 0.00 0.00 36.04 3.53
312 313 2.677542 TGATGACTATCGCTACCCCT 57.322 50.000 0.00 0.00 36.04 4.79
313 314 3.589988 CAATGATGACTATCGCTACCCC 58.410 50.000 0.00 0.00 36.04 4.95
314 315 2.996621 GCAATGATGACTATCGCTACCC 59.003 50.000 0.00 0.00 36.04 3.69
315 316 3.430218 GTGCAATGATGACTATCGCTACC 59.570 47.826 0.00 0.00 36.04 3.18
316 317 3.120286 CGTGCAATGATGACTATCGCTAC 59.880 47.826 0.00 0.00 36.04 3.58
317 318 3.243401 ACGTGCAATGATGACTATCGCTA 60.243 43.478 0.00 0.00 36.04 4.26
318 319 2.130395 CGTGCAATGATGACTATCGCT 58.870 47.619 0.00 0.00 36.04 4.93
319 320 1.860950 ACGTGCAATGATGACTATCGC 59.139 47.619 0.00 0.00 36.04 4.58
320 321 4.740205 AGTAACGTGCAATGATGACTATCG 59.260 41.667 0.00 0.00 36.04 2.92
321 322 5.980116 AGAGTAACGTGCAATGATGACTATC 59.020 40.000 0.00 0.00 0.00 2.08
322 323 5.750547 CAGAGTAACGTGCAATGATGACTAT 59.249 40.000 0.00 0.00 0.00 2.12
323 324 5.102313 CAGAGTAACGTGCAATGATGACTA 58.898 41.667 0.00 0.00 0.00 2.59
324 325 3.928992 CAGAGTAACGTGCAATGATGACT 59.071 43.478 0.00 0.00 0.00 3.41
325 326 3.926527 TCAGAGTAACGTGCAATGATGAC 59.073 43.478 0.00 0.00 0.00 3.06
326 327 4.186856 TCAGAGTAACGTGCAATGATGA 57.813 40.909 0.00 0.00 0.00 2.92
327 328 4.389992 AGTTCAGAGTAACGTGCAATGATG 59.610 41.667 0.00 0.00 34.46 3.07
328 329 4.569943 AGTTCAGAGTAACGTGCAATGAT 58.430 39.130 0.00 0.00 34.46 2.45
329 330 3.990092 AGTTCAGAGTAACGTGCAATGA 58.010 40.909 0.00 0.00 34.46 2.57
330 331 4.457810 CAAGTTCAGAGTAACGTGCAATG 58.542 43.478 0.00 0.00 33.29 2.82
331 332 3.498397 CCAAGTTCAGAGTAACGTGCAAT 59.502 43.478 0.00 0.00 37.47 3.56
332 333 2.869801 CCAAGTTCAGAGTAACGTGCAA 59.130 45.455 0.00 0.00 37.47 4.08
333 334 2.479837 CCAAGTTCAGAGTAACGTGCA 58.520 47.619 0.00 0.00 37.47 4.57
334 335 1.798813 CCCAAGTTCAGAGTAACGTGC 59.201 52.381 0.00 0.00 37.47 5.34
335 336 3.107642 ACCCAAGTTCAGAGTAACGTG 57.892 47.619 0.00 0.00 38.21 4.49
336 337 4.942761 TTACCCAAGTTCAGAGTAACGT 57.057 40.909 0.00 0.00 34.46 3.99
337 338 6.796705 ATTTTACCCAAGTTCAGAGTAACG 57.203 37.500 0.00 0.00 34.46 3.18
338 339 7.447545 AGGAATTTTACCCAAGTTCAGAGTAAC 59.552 37.037 0.00 0.00 0.00 2.50
339 340 7.523415 AGGAATTTTACCCAAGTTCAGAGTAA 58.477 34.615 0.00 0.00 0.00 2.24
340 341 7.086685 AGGAATTTTACCCAAGTTCAGAGTA 57.913 36.000 0.00 0.00 0.00 2.59
341 342 5.953571 AGGAATTTTACCCAAGTTCAGAGT 58.046 37.500 0.00 0.00 0.00 3.24
342 343 6.003950 TGAGGAATTTTACCCAAGTTCAGAG 58.996 40.000 0.00 0.00 0.00 3.35
343 344 5.947663 TGAGGAATTTTACCCAAGTTCAGA 58.052 37.500 0.00 0.00 0.00 3.27
344 345 6.209391 ACATGAGGAATTTTACCCAAGTTCAG 59.791 38.462 0.00 0.00 0.00 3.02
345 346 6.015519 CACATGAGGAATTTTACCCAAGTTCA 60.016 38.462 0.00 0.00 0.00 3.18
346 347 6.208599 TCACATGAGGAATTTTACCCAAGTTC 59.791 38.462 0.00 0.00 0.00 3.01
347 348 6.074648 TCACATGAGGAATTTTACCCAAGTT 58.925 36.000 0.00 0.00 0.00 2.66
348 349 5.640147 TCACATGAGGAATTTTACCCAAGT 58.360 37.500 0.00 0.00 0.00 3.16
349 350 6.588719 TTCACATGAGGAATTTTACCCAAG 57.411 37.500 0.00 0.00 0.00 3.61
350 351 6.985653 TTTCACATGAGGAATTTTACCCAA 57.014 33.333 0.00 0.00 0.00 4.12
351 352 8.837099 ATATTTCACATGAGGAATTTTACCCA 57.163 30.769 1.71 0.00 0.00 4.51
367 368 8.414003 GCGGATGATCTAGGTATATATTTCACA 58.586 37.037 0.00 0.00 0.00 3.58
368 369 7.591795 CGCGGATGATCTAGGTATATATTTCAC 59.408 40.741 0.00 0.00 0.00 3.18
369 370 7.649057 CGCGGATGATCTAGGTATATATTTCA 58.351 38.462 0.00 0.00 0.00 2.69
370 371 6.583050 GCGCGGATGATCTAGGTATATATTTC 59.417 42.308 8.83 0.00 0.00 2.17
371 372 6.448006 GCGCGGATGATCTAGGTATATATTT 58.552 40.000 8.83 0.00 0.00 1.40
372 373 5.334957 CGCGCGGATGATCTAGGTATATATT 60.335 44.000 24.84 0.00 0.00 1.28
373 374 4.154375 CGCGCGGATGATCTAGGTATATAT 59.846 45.833 24.84 0.00 0.00 0.86
374 375 3.497262 CGCGCGGATGATCTAGGTATATA 59.503 47.826 24.84 0.00 0.00 0.86
375 376 2.290916 CGCGCGGATGATCTAGGTATAT 59.709 50.000 24.84 0.00 0.00 0.86
376 377 1.669265 CGCGCGGATGATCTAGGTATA 59.331 52.381 24.84 0.00 0.00 1.47
377 378 0.452184 CGCGCGGATGATCTAGGTAT 59.548 55.000 24.84 0.00 0.00 2.73
378 379 0.887836 ACGCGCGGATGATCTAGGTA 60.888 55.000 35.22 0.00 0.00 3.08
379 380 2.194212 ACGCGCGGATGATCTAGGT 61.194 57.895 35.22 4.80 0.00 3.08
380 381 1.730902 CACGCGCGGATGATCTAGG 60.731 63.158 35.22 1.22 0.00 3.02
381 382 2.368105 GCACGCGCGGATGATCTAG 61.368 63.158 35.22 12.26 0.00 2.43
382 383 2.354656 GCACGCGCGGATGATCTA 60.355 61.111 35.22 0.00 0.00 1.98
383 384 3.797225 ATGCACGCGCGGATGATCT 62.797 57.895 35.22 8.09 42.97 2.75
384 385 2.885676 AATGCACGCGCGGATGATC 61.886 57.895 35.22 15.51 42.97 2.92
385 386 2.896854 AATGCACGCGCGGATGAT 60.897 55.556 35.22 16.85 42.97 2.45
386 387 3.863543 CAATGCACGCGCGGATGA 61.864 61.111 35.22 15.17 42.97 2.92
387 388 2.807906 TACAATGCACGCGCGGATG 61.808 57.895 35.22 24.76 42.97 3.51
388 389 2.510464 TACAATGCACGCGCGGAT 60.510 55.556 35.22 19.52 42.97 4.18
389 390 3.483665 GTACAATGCACGCGCGGA 61.484 61.111 35.22 17.97 42.97 5.54
390 391 4.514569 GGTACAATGCACGCGCGG 62.515 66.667 35.22 23.25 42.97 6.46
391 392 4.844065 CGGTACAATGCACGCGCG 62.844 66.667 30.96 30.96 42.97 6.86
395 396 1.975837 ATTTTGCGGTACAATGCACG 58.024 45.000 6.22 0.00 41.57 5.34
396 397 3.122780 GGAAATTTTGCGGTACAATGCAC 59.877 43.478 6.22 0.00 41.57 4.57
397 398 3.243873 TGGAAATTTTGCGGTACAATGCA 60.244 39.130 2.93 2.93 38.31 3.96
398 399 3.321497 TGGAAATTTTGCGGTACAATGC 58.679 40.909 0.00 0.00 38.31 3.56
399 400 5.914085 TTTGGAAATTTTGCGGTACAATG 57.086 34.783 0.00 0.00 38.31 2.82
400 401 6.226787 TGATTTGGAAATTTTGCGGTACAAT 58.773 32.000 0.00 0.00 38.31 2.71
401 402 5.601662 TGATTTGGAAATTTTGCGGTACAA 58.398 33.333 0.00 0.00 36.13 2.41
402 403 5.201713 TGATTTGGAAATTTTGCGGTACA 57.798 34.783 0.00 0.00 0.00 2.90
403 404 5.637387 ACATGATTTGGAAATTTTGCGGTAC 59.363 36.000 0.00 0.00 0.00 3.34
404 405 5.636965 CACATGATTTGGAAATTTTGCGGTA 59.363 36.000 0.00 0.00 0.00 4.02
405 406 4.451774 CACATGATTTGGAAATTTTGCGGT 59.548 37.500 0.00 0.00 0.00 5.68
406 407 4.451774 ACACATGATTTGGAAATTTTGCGG 59.548 37.500 0.00 0.00 0.00 5.69
407 408 5.594724 ACACATGATTTGGAAATTTTGCG 57.405 34.783 0.00 0.00 0.00 4.85
408 409 7.482428 GCAATACACATGATTTGGAAATTTTGC 59.518 33.333 0.00 0.00 0.00 3.68
409 410 7.964011 GGCAATACACATGATTTGGAAATTTTG 59.036 33.333 0.00 0.00 0.00 2.44
410 411 7.664731 TGGCAATACACATGATTTGGAAATTTT 59.335 29.630 0.00 0.00 0.00 1.82
411 412 7.119553 GTGGCAATACACATGATTTGGAAATTT 59.880 33.333 0.00 0.00 40.99 1.82
412 413 6.594937 GTGGCAATACACATGATTTGGAAATT 59.405 34.615 0.00 0.00 40.99 1.82
413 414 6.108015 GTGGCAATACACATGATTTGGAAAT 58.892 36.000 0.00 0.00 40.99 2.17
414 415 5.477510 GTGGCAATACACATGATTTGGAAA 58.522 37.500 0.00 0.00 40.99 3.13
415 416 4.380339 CGTGGCAATACACATGATTTGGAA 60.380 41.667 0.00 0.00 41.38 3.53
416 417 3.128415 CGTGGCAATACACATGATTTGGA 59.872 43.478 0.00 0.00 41.38 3.53
417 418 3.128415 TCGTGGCAATACACATGATTTGG 59.872 43.478 0.00 0.00 41.38 3.28
418 419 4.354071 TCGTGGCAATACACATGATTTG 57.646 40.909 0.00 0.00 41.38 2.32
419 420 4.458989 ACTTCGTGGCAATACACATGATTT 59.541 37.500 0.00 0.00 41.38 2.17
420 421 4.009675 ACTTCGTGGCAATACACATGATT 58.990 39.130 0.00 0.00 41.38 2.57
421 422 3.609853 ACTTCGTGGCAATACACATGAT 58.390 40.909 0.00 0.00 41.38 2.45
422 423 3.000041 GACTTCGTGGCAATACACATGA 59.000 45.455 0.00 0.00 41.38 3.07
423 424 2.095853 GGACTTCGTGGCAATACACATG 59.904 50.000 0.00 0.00 41.38 3.21
424 425 2.356135 GGACTTCGTGGCAATACACAT 58.644 47.619 0.00 0.00 41.38 3.21
425 426 1.609580 GGGACTTCGTGGCAATACACA 60.610 52.381 0.00 0.00 41.38 3.72
426 427 1.084289 GGGACTTCGTGGCAATACAC 58.916 55.000 0.00 0.00 37.99 2.90
427 428 0.687920 TGGGACTTCGTGGCAATACA 59.312 50.000 0.00 0.00 0.00 2.29
428 429 1.084289 GTGGGACTTCGTGGCAATAC 58.916 55.000 0.00 0.00 0.00 1.89
429 430 0.390603 CGTGGGACTTCGTGGCAATA 60.391 55.000 0.00 0.00 0.00 1.90
430 431 1.671054 CGTGGGACTTCGTGGCAAT 60.671 57.895 0.00 0.00 0.00 3.56
431 432 2.280524 CGTGGGACTTCGTGGCAA 60.281 61.111 0.00 0.00 0.00 4.52
432 433 3.228017 TCGTGGGACTTCGTGGCA 61.228 61.111 0.00 0.00 0.00 4.92
433 434 2.737376 GTCGTGGGACTTCGTGGC 60.737 66.667 0.00 0.00 40.15 5.01
434 435 1.663702 GTGTCGTGGGACTTCGTGG 60.664 63.158 0.00 0.00 43.79 4.94
435 436 0.319555 ATGTGTCGTGGGACTTCGTG 60.320 55.000 0.00 0.00 43.79 4.35
436 437 0.038526 GATGTGTCGTGGGACTTCGT 60.039 55.000 0.00 0.00 43.79 3.85
437 438 0.243907 AGATGTGTCGTGGGACTTCG 59.756 55.000 0.00 0.00 43.79 3.79
438 439 2.457366 AAGATGTGTCGTGGGACTTC 57.543 50.000 0.00 0.00 43.79 3.01
439 440 3.118738 GGATAAGATGTGTCGTGGGACTT 60.119 47.826 0.00 0.00 43.79 3.01
440 441 2.431057 GGATAAGATGTGTCGTGGGACT 59.569 50.000 0.00 0.00 43.79 3.85
441 442 2.167693 TGGATAAGATGTGTCGTGGGAC 59.832 50.000 0.00 0.00 43.71 4.46
442 443 2.462723 TGGATAAGATGTGTCGTGGGA 58.537 47.619 0.00 0.00 0.00 4.37
443 444 2.979814 TGGATAAGATGTGTCGTGGG 57.020 50.000 0.00 0.00 0.00 4.61
444 445 5.621197 TTTTTGGATAAGATGTGTCGTGG 57.379 39.130 0.00 0.00 0.00 4.94
464 465 5.238432 GCCATTTTGAAACGGAGGAATTTTT 59.762 36.000 0.00 0.00 0.00 1.94
465 466 4.754618 GCCATTTTGAAACGGAGGAATTTT 59.245 37.500 0.00 0.00 0.00 1.82
466 467 4.040339 AGCCATTTTGAAACGGAGGAATTT 59.960 37.500 0.00 0.00 0.00 1.82
467 468 3.578282 AGCCATTTTGAAACGGAGGAATT 59.422 39.130 0.00 0.00 0.00 2.17
468 469 3.165071 AGCCATTTTGAAACGGAGGAAT 58.835 40.909 0.00 0.00 0.00 3.01
495 496 2.814336 ACCTGCTTTAGTAGTTTGCAGC 59.186 45.455 7.64 0.00 46.64 5.25
497 498 4.884744 TCAAACCTGCTTTAGTAGTTTGCA 59.115 37.500 8.63 0.00 33.55 4.08
499 500 6.206498 GGTTCAAACCTGCTTTAGTAGTTTG 58.794 40.000 4.63 7.43 45.75 2.93
525 526 3.975035 GGACAATTGAAAGTCAGCGAAAC 59.025 43.478 13.59 0.00 36.50 2.78
538 539 7.787847 CCAACTAGGAGCTTGGGACAATTGA 62.788 48.000 13.59 0.00 42.64 2.57
540 541 3.562176 CCAACTAGGAGCTTGGGACAATT 60.562 47.826 2.56 0.00 42.64 2.32
568 569 0.960364 CGGGTAGGCACAAGCACAAT 60.960 55.000 0.00 0.00 44.61 2.71
576 577 1.277579 TAAATGGTCGGGTAGGCACA 58.722 50.000 0.00 0.00 0.00 4.57
584 585 8.863872 AAATAAAGAGGATATAAATGGTCGGG 57.136 34.615 0.00 0.00 0.00 5.14
634 635 1.453015 GGCCTTGACCACACACACA 60.453 57.895 0.00 0.00 0.00 3.72
635 636 1.447317 CTGGCCTTGACCACACACAC 61.447 60.000 3.32 0.00 35.33 3.82
636 637 1.152984 CTGGCCTTGACCACACACA 60.153 57.895 3.32 0.00 35.33 3.72
638 639 2.055689 CTCCTGGCCTTGACCACACA 62.056 60.000 3.32 0.00 35.33 3.72
639 640 1.302832 CTCCTGGCCTTGACCACAC 60.303 63.158 3.32 0.00 35.33 3.82
640 641 3.160585 CTCCTGGCCTTGACCACA 58.839 61.111 3.32 0.00 35.33 4.17
650 655 1.986575 GCGAATGAGTTGCTCCTGGC 61.987 60.000 0.00 0.00 42.22 4.85
654 659 1.730446 GCAAAGCGAATGAGTTGCTCC 60.730 52.381 0.00 0.00 42.41 4.70
678 683 2.156098 CTGGGCTTGGCTTTTAACGTA 58.844 47.619 0.00 0.00 0.00 3.57
702 711 2.027169 CCGATAAGACGACGGGGC 59.973 66.667 0.00 0.00 42.48 5.80
718 727 4.832608 GTCGGGGTGTGATCGGCC 62.833 72.222 0.00 0.00 0.00 6.13
948 972 0.833287 GCAAGACTGGGATGAGGCTA 59.167 55.000 0.00 0.00 27.98 3.93
1357 1385 5.298527 ACCCAAACTGTAGCAAAGTAAGAAC 59.701 40.000 0.00 0.00 0.00 3.01
2002 2051 1.373812 GCCCCTGTACTTGGACGTT 59.626 57.895 6.99 0.00 0.00 3.99
2035 2084 4.906537 GGTTGGGTTGGGGCGTGT 62.907 66.667 0.00 0.00 0.00 4.49
2079 2136 0.827368 GCGAGGAGGAAGAAGATGGT 59.173 55.000 0.00 0.00 0.00 3.55
2085 2142 0.172803 GTTAGCGCGAGGAGGAAGAA 59.827 55.000 12.10 0.00 0.00 2.52
2276 2359 5.049167 AGTACGTACTGCTACTACTGCTAG 58.951 45.833 26.87 0.00 34.72 3.42
2339 2434 5.551233 AGCAGTTCATTAGTTAGCACTTGA 58.449 37.500 0.00 0.00 34.06 3.02
2340 2435 5.641209 AGAGCAGTTCATTAGTTAGCACTTG 59.359 40.000 0.00 0.00 34.06 3.16
2341 2436 5.799213 AGAGCAGTTCATTAGTTAGCACTT 58.201 37.500 0.00 0.00 34.06 3.16
2342 2437 5.413309 AGAGCAGTTCATTAGTTAGCACT 57.587 39.130 0.00 0.00 36.99 4.40
2343 2438 6.310197 CAAAGAGCAGTTCATTAGTTAGCAC 58.690 40.000 0.00 0.00 0.00 4.40
2381 2476 0.039618 GATCCCCAGGCAAAAGGTCA 59.960 55.000 0.00 0.00 0.00 4.02
2418 2513 3.619038 CCAAGATAAACTGAAGACGGAGC 59.381 47.826 0.00 0.00 0.00 4.70
2475 2576 5.575606 CCAGCAAGATTAAGCAAAGTGAATG 59.424 40.000 0.00 0.00 0.00 2.67
2508 2609 2.159430 CACAAGCGCTAGTATTTGCACA 59.841 45.455 12.05 0.00 0.00 4.57
2511 2612 1.815132 GCACAAGCGCTAGTATTTGC 58.185 50.000 12.05 6.23 0.00 3.68
2702 2806 4.035909 TGCAATGTTCATCGAAGATGGATG 59.964 41.667 9.77 0.00 45.12 3.51
2711 2815 2.086094 ACATGCTGCAATGTTCATCGA 58.914 42.857 6.36 0.00 37.50 3.59
2720 2824 4.196626 AGCAATGTAAACATGCTGCAAT 57.803 36.364 17.53 0.00 40.63 3.56
2721 2825 3.663995 AGCAATGTAAACATGCTGCAA 57.336 38.095 17.53 0.00 40.63 4.08
2722 2826 3.243805 ACAAGCAATGTAAACATGCTGCA 60.244 39.130 17.53 4.13 40.63 4.41
2723 2827 3.319755 ACAAGCAATGTAAACATGCTGC 58.680 40.909 15.77 13.32 41.63 5.25
2724 2828 5.672051 CAAACAAGCAATGTAAACATGCTG 58.328 37.500 15.77 13.07 42.99 4.41
2725 2829 4.211794 GCAAACAAGCAATGTAAACATGCT 59.788 37.500 11.68 11.68 42.99 3.79
2726 2830 4.025061 TGCAAACAAGCAATGTAAACATGC 60.025 37.500 0.00 3.38 42.99 4.06
2727 2831 5.654317 TGCAAACAAGCAATGTAAACATG 57.346 34.783 0.00 0.00 42.99 3.21
2758 2862 3.940221 TCACAAGCAAGCAAGCAATTTTT 59.060 34.783 3.19 0.00 36.85 1.94
2759 2863 3.533547 TCACAAGCAAGCAAGCAATTTT 58.466 36.364 3.19 0.00 36.85 1.82
2760 2864 3.182341 TCACAAGCAAGCAAGCAATTT 57.818 38.095 3.19 0.00 36.85 1.82
2761 2865 2.894763 TCACAAGCAAGCAAGCAATT 57.105 40.000 3.19 0.00 36.85 2.32
2783 2887 4.808364 GCTCAGAATCACTGTCTACATTCC 59.192 45.833 0.00 0.00 45.86 3.01
2784 2888 5.414360 TGCTCAGAATCACTGTCTACATTC 58.586 41.667 0.00 0.00 45.86 2.67
2792 2896 5.068198 ACACAAAAATGCTCAGAATCACTGT 59.932 36.000 0.00 0.00 45.86 3.55
2801 2905 1.782569 CGCACACACAAAAATGCTCAG 59.217 47.619 0.00 0.00 35.88 3.35
2805 2909 0.043138 GCACGCACACACAAAAATGC 60.043 50.000 0.00 0.00 34.66 3.56
2810 2914 2.099254 CACGCACGCACACACAAA 59.901 55.556 0.00 0.00 0.00 2.83
2887 2994 1.079543 CCTTCTGAGGTGAGCCACG 60.080 63.158 0.00 0.00 38.32 4.94
2926 3035 5.392811 GCACATTTTTCTCAGGAGGATTCAG 60.393 44.000 0.00 0.00 0.00 3.02
2927 3036 4.460382 GCACATTTTTCTCAGGAGGATTCA 59.540 41.667 0.00 0.00 0.00 2.57
2928 3037 4.460382 TGCACATTTTTCTCAGGAGGATTC 59.540 41.667 0.00 0.00 0.00 2.52
2930 3039 4.038271 TGCACATTTTTCTCAGGAGGAT 57.962 40.909 0.00 0.00 0.00 3.24
2931 3040 3.507162 TGCACATTTTTCTCAGGAGGA 57.493 42.857 0.00 0.00 0.00 3.71
2932 3041 4.673580 CGAATGCACATTTTTCTCAGGAGG 60.674 45.833 0.00 0.00 0.00 4.30
2934 3043 4.071423 TCGAATGCACATTTTTCTCAGGA 58.929 39.130 0.00 0.00 0.00 3.86
2936 3045 4.727179 CGATCGAATGCACATTTTTCTCAG 59.273 41.667 10.26 0.00 0.00 3.35
2942 3051 2.917701 TGCGATCGAATGCACATTTT 57.082 40.000 21.57 0.00 35.90 1.82
2947 3056 1.369689 GCCATGCGATCGAATGCAC 60.370 57.895 27.77 18.62 45.07 4.57
3339 3483 3.893326 ATGATCATTGTGACAGGACGA 57.107 42.857 1.18 0.00 0.00 4.20
3433 3577 2.093152 CCAAAAGCATGCAAAGAATCGC 59.907 45.455 21.98 0.00 0.00 4.58
3539 3683 4.195334 AGCCGGCCAGCCTTATGG 62.195 66.667 26.15 1.40 43.72 2.74
3596 3740 0.178891 AAAGGACAGGAGAGGAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
3651 3796 2.538737 CGATCAAACACACACACACACC 60.539 50.000 0.00 0.00 0.00 4.16
3652 3797 2.095213 ACGATCAAACACACACACACAC 59.905 45.455 0.00 0.00 0.00 3.82
3653 3798 2.351455 ACGATCAAACACACACACACA 58.649 42.857 0.00 0.00 0.00 3.72
3680 3825 1.512947 CACGCACGCAACAAACACA 60.513 52.632 0.00 0.00 0.00 3.72
3727 3876 4.547905 ATCGCCGCCACGTCGTAG 62.548 66.667 0.00 0.00 0.00 3.51
3926 4075 2.352032 GCTGCCTCCAGTAGTCCGT 61.352 63.158 0.00 0.00 41.26 4.69
3987 4136 0.109039 GGACTCACTCGACAGAAGGC 60.109 60.000 0.00 0.00 0.00 4.35
4000 4149 1.548357 GCAGCAGGGAGAAGGACTCA 61.548 60.000 0.00 0.00 46.54 3.41
4357 4512 1.835531 GCCAAGTAACCAGCCCTAGTA 59.164 52.381 0.00 0.00 0.00 1.82
4464 4620 1.618837 CTGGAGAAGGAACCACGAGAA 59.381 52.381 0.00 0.00 32.44 2.87
4509 4665 0.969149 TGCCATGGCTCGGATACTAG 59.031 55.000 35.53 0.00 42.51 2.57
4611 4770 6.231211 GTTTCATGAAAGTTAGGAGGTCTGA 58.769 40.000 21.05 0.00 0.00 3.27
4631 4790 4.215613 ACGAAGGTAGAGCATTTTGGTTTC 59.784 41.667 0.00 0.00 0.00 2.78
4643 4802 3.921021 GTCACATGAACACGAAGGTAGAG 59.079 47.826 0.00 0.00 0.00 2.43
4646 4805 4.055360 CAAGTCACATGAACACGAAGGTA 58.945 43.478 0.00 0.00 0.00 3.08
4719 4878 0.320421 GACTACACAAGCCCGAGCAA 60.320 55.000 0.00 0.00 43.56 3.91
4720 4879 1.292223 GACTACACAAGCCCGAGCA 59.708 57.895 0.00 0.00 43.56 4.26
4722 4881 0.732880 CGTGACTACACAAGCCCGAG 60.733 60.000 0.00 0.00 46.20 4.63
4723 4882 1.287815 CGTGACTACACAAGCCCGA 59.712 57.895 0.00 0.00 46.20 5.14
4724 4883 1.736645 CCGTGACTACACAAGCCCG 60.737 63.158 0.00 0.00 46.20 6.13
4725 4884 0.669625 GTCCGTGACTACACAAGCCC 60.670 60.000 0.00 0.00 46.20 5.19
4726 4885 0.317479 AGTCCGTGACTACACAAGCC 59.683 55.000 4.93 0.00 46.20 4.35
4727 4886 1.699343 GAGTCCGTGACTACACAAGC 58.301 55.000 6.55 0.00 43.53 4.01
4728 4887 1.965083 CGAGTCCGTGACTACACAAG 58.035 55.000 6.55 0.00 43.53 3.16
4782 4941 4.993905 AGTACAAAAGGTCAAAACAGTGC 58.006 39.130 0.00 0.00 0.00 4.40
4802 4961 5.321927 AGGTCAATTCGGGAATTTGTTAGT 58.678 37.500 3.97 0.00 38.84 2.24
4862 5021 0.257039 GCCAGAGATGTTGGGGTCAT 59.743 55.000 0.00 0.00 36.19 3.06
4867 5026 0.742281 CAGACGCCAGAGATGTTGGG 60.742 60.000 0.00 0.00 36.19 4.12
4889 5048 2.401766 CCTGGCGTCTCCAATGCAC 61.402 63.158 0.00 0.00 46.01 4.57
4976 5135 1.541310 CCAAGTACCCTGGCGTCTGA 61.541 60.000 0.00 0.00 0.00 3.27
5241 5400 5.712446 CAGATAGGAGTATTCCCGATTCTCA 59.288 44.000 0.00 0.00 45.24 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.