Multiple sequence alignment - TraesCS5B01G408000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G408000 chr5B 100.000 3542 0 0 1 3542 583580440 583576899 0.000000e+00 6541.0
1 TraesCS5B01G408000 chr5B 89.328 253 24 2 3202 3452 296045598 296045347 7.380000e-82 315.0
2 TraesCS5B01G408000 chr5B 88.755 249 25 2 3202 3448 296018106 296017859 5.750000e-78 302.0
3 TraesCS5B01G408000 chr5B 79.196 423 75 12 50 467 338935181 338934767 7.490000e-72 281.0
4 TraesCS5B01G408000 chr5A 91.185 2734 140 42 1 2718 595543510 595540862 0.000000e+00 3620.0
5 TraesCS5B01G408000 chr5A 89.723 253 15 7 2791 3043 595540826 595540585 2.650000e-81 313.0
6 TraesCS5B01G408000 chr5A 86.833 281 23 3 3240 3519 126097952 126097685 5.750000e-78 302.0
7 TraesCS5B01G408000 chr5D 94.962 2084 60 18 964 3037 476158932 476156884 0.000000e+00 3225.0
8 TraesCS5B01G408000 chr5D 88.268 895 81 11 34 918 476159819 476158939 0.000000e+00 1050.0
9 TraesCS5B01G408000 chr5D 91.707 410 15 10 1827 2236 286180270 286180660 5.170000e-153 551.0
10 TraesCS5B01G408000 chr5D 89.024 410 14 11 1827 2236 563675488 563675110 2.470000e-131 479.0
11 TraesCS5B01G408000 chr5D 86.061 330 22 9 881 1209 286178114 286178420 2.040000e-87 333.0
12 TraesCS5B01G408000 chr5D 94.634 205 6 3 2997 3201 476156881 476156682 2.650000e-81 313.0
13 TraesCS5B01G408000 chr5D 88.554 166 9 3 1596 1753 286180102 286180265 3.610000e-45 193.0
14 TraesCS5B01G408000 chr5D 87.059 170 14 5 881 1049 563677608 563677446 6.040000e-43 185.0
15 TraesCS5B01G408000 chr5D 94.068 118 7 0 1092 1209 563677447 563677330 2.810000e-41 180.0
16 TraesCS5B01G408000 chr5D 96.000 50 2 0 1234 1283 286178417 286178466 8.150000e-12 82.4
17 TraesCS5B01G408000 chr6B 87.679 909 59 15 1328 2216 615309139 615310014 0.000000e+00 1009.0
18 TraesCS5B01G408000 chr6B 77.570 428 40 22 898 1324 615295595 615295967 1.290000e-49 207.0
19 TraesCS5B01G408000 chr7D 91.707 410 15 10 1827 2236 529583687 529583297 5.170000e-153 551.0
20 TraesCS5B01G408000 chr7D 88.520 331 31 4 3210 3540 581107368 581107691 9.220000e-106 394.0
21 TraesCS5B01G408000 chr7D 85.758 330 23 9 881 1209 529585967 529585661 9.480000e-86 327.0
22 TraesCS5B01G408000 chr7D 78.436 422 78 11 50 468 28543486 28543075 2.710000e-66 263.0
23 TraesCS5B01G408000 chr7D 81.325 166 6 6 1596 1753 529583840 529583692 1.040000e-20 111.0
24 TraesCS5B01G408000 chr7D 96.000 50 2 0 1234 1283 529585664 529585615 8.150000e-12 82.4
25 TraesCS5B01G408000 chr2A 91.463 410 16 10 1827 2236 102426203 102425813 2.400000e-151 545.0
26 TraesCS5B01G408000 chr2A 85.455 330 24 9 881 1209 102428345 102428039 4.410000e-84 322.0
27 TraesCS5B01G408000 chr2A 80.523 421 70 12 63 479 203533153 203533565 2.650000e-81 313.0
28 TraesCS5B01G408000 chr2A 80.723 166 7 6 1596 1753 102426356 102426208 4.840000e-19 106.0
29 TraesCS5B01G408000 chr2A 96.000 50 2 0 1234 1283 102428042 102427993 8.150000e-12 82.4
30 TraesCS5B01G408000 chr3A 90.732 410 19 11 1827 2236 572018860 572018470 2.420000e-146 529.0
31 TraesCS5B01G408000 chr3A 87.574 169 8 5 1596 1753 572019031 572018865 2.170000e-42 183.0
32 TraesCS5B01G408000 chr3A 92.174 115 8 1 1096 1209 572026363 572026249 1.020000e-35 161.0
33 TraesCS5B01G408000 chr3A 85.276 163 16 5 881 1042 572026513 572026358 1.020000e-35 161.0
34 TraesCS5B01G408000 chr3A 100.000 28 0 0 1256 1283 572020698 572020671 6.000000e-03 52.8
35 TraesCS5B01G408000 chr2D 90.732 410 19 10 1827 2236 37310702 37310312 2.420000e-146 529.0
36 TraesCS5B01G408000 chr2D 88.923 325 34 2 3202 3524 404295911 404296235 1.980000e-107 399.0
37 TraesCS5B01G408000 chr2D 85.196 331 23 11 881 1209 37312588 37312282 2.050000e-82 316.0
38 TraesCS5B01G408000 chr2D 80.132 453 64 16 33 479 420735349 420735781 7.380000e-82 315.0
39 TraesCS5B01G408000 chr2D 96.000 50 2 0 1234 1283 37312285 37312236 8.150000e-12 82.4
40 TraesCS5B01G408000 chr4D 89.457 313 31 2 3202 3513 431747893 431747582 9.220000e-106 394.0
41 TraesCS5B01G408000 chr4D 85.981 321 36 5 3201 3514 65222616 65222298 5.670000e-88 335.0
42 TraesCS5B01G408000 chr4D 85.802 324 30 6 3201 3523 481339635 481339943 2.640000e-86 329.0
43 TraesCS5B01G408000 chr4D 83.383 337 48 8 51 384 497536027 497536358 4.440000e-79 305.0
44 TraesCS5B01G408000 chr3B 81.798 445 64 14 4 439 562779700 562780136 1.210000e-94 357.0
45 TraesCS5B01G408000 chr3B 86.604 321 32 7 3202 3514 559205901 559205584 9.410000e-91 344.0
46 TraesCS5B01G408000 chr6D 85.542 332 39 8 3202 3530 445421396 445421721 4.380000e-89 339.0
47 TraesCS5B01G408000 chr3D 79.425 452 79 12 33 477 23857100 23856656 1.240000e-79 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G408000 chr5B 583576899 583580440 3541 True 6541.000000 6541 100.000000 1 3542 1 chr5B.!!$R4 3541
1 TraesCS5B01G408000 chr5A 595540585 595543510 2925 True 1966.500000 3620 90.454000 1 3043 2 chr5A.!!$R2 3042
2 TraesCS5B01G408000 chr5D 476156682 476159819 3137 True 1529.333333 3225 92.621333 34 3201 3 chr5D.!!$R1 3167
3 TraesCS5B01G408000 chr5D 286178114 286180660 2546 False 289.850000 551 90.580500 881 2236 4 chr5D.!!$F1 1355
4 TraesCS5B01G408000 chr5D 563675110 563677608 2498 True 281.333333 479 90.050333 881 2236 3 chr5D.!!$R2 1355
5 TraesCS5B01G408000 chr6B 615309139 615310014 875 False 1009.000000 1009 87.679000 1328 2216 1 chr6B.!!$F2 888
6 TraesCS5B01G408000 chr7D 529583297 529585967 2670 True 267.850000 551 88.697500 881 2236 4 chr7D.!!$R2 1355
7 TraesCS5B01G408000 chr2A 102425813 102428345 2532 True 263.850000 545 88.410250 881 2236 4 chr2A.!!$R1 1355
8 TraesCS5B01G408000 chr3A 572018470 572020698 2228 True 254.933333 529 92.768667 1256 2236 3 chr3A.!!$R1 980
9 TraesCS5B01G408000 chr2D 37310312 37312588 2276 True 309.133333 529 90.642667 881 2236 3 chr2D.!!$R1 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.598065 GGTCCTCATGCGTGCTTTTT 59.402 50.0 0.0 0.0 0.0 1.94 F
787 807 0.602905 CACACGTTTCCCACTCCCTC 60.603 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3372 1.669999 GGCGGCCGTAGTCCTTCTTA 61.670 60.0 28.7 0.0 0.00 2.10 R
2721 4290 0.033920 CACTGACTAGCACTGGCACA 59.966 55.0 0.0 0.0 44.61 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.625897 CACGGGTCTCAGGGCACA 61.626 66.667 0.00 0.00 0.00 4.57
60 61 0.598065 GGTCCTCATGCGTGCTTTTT 59.402 50.000 0.00 0.00 0.00 1.94
85 86 5.964887 TTTTGGCTTCTGATTTTCAAACG 57.035 34.783 0.00 0.00 0.00 3.60
128 129 9.651718 GAATAGTCCAAATAAGTAATGCTTTCG 57.348 33.333 0.00 0.00 38.57 3.46
141 142 7.848491 AGTAATGCTTTCGTATTCGTATTTCC 58.152 34.615 0.00 0.00 38.33 3.13
142 143 6.671614 AATGCTTTCGTATTCGTATTTCCA 57.328 33.333 0.00 0.00 38.33 3.53
147 148 6.018994 GCTTTCGTATTCGTATTTCCAGTGAT 60.019 38.462 0.00 0.00 38.33 3.06
151 152 5.977725 CGTATTCGTATTTCCAGTGATGAGT 59.022 40.000 0.00 0.00 0.00 3.41
236 239 8.923683 GCTTTAACTCTTCAAACTTAGTACGAT 58.076 33.333 0.00 0.00 0.00 3.73
241 244 6.149142 ACTCTTCAAACTTAGTACGATCGACT 59.851 38.462 24.34 21.14 0.00 4.18
261 264 8.682128 TCGACTAATAAAATCACAATTTTGGC 57.318 30.769 6.42 0.00 43.32 4.52
321 324 7.921214 TCTTATCTATGAAACTTGGTAAGAGCG 59.079 37.037 0.00 0.00 0.00 5.03
396 401 0.811281 AAAACTTGCTATGCCCTCGC 59.189 50.000 0.00 0.00 0.00 5.03
439 445 3.774528 TGAGGCAATCGAGCGGCT 61.775 61.111 12.07 12.07 41.35 5.52
440 446 2.417516 GAGGCAATCGAGCGGCTA 59.582 61.111 12.19 0.00 38.29 3.93
445 455 1.953138 CAATCGAGCGGCTAGGCAG 60.953 63.158 17.45 10.16 34.64 4.85
447 457 4.815108 TCGAGCGGCTAGGCAGGA 62.815 66.667 17.45 4.41 34.64 3.86
537 547 4.020378 CGGTTGCCCAAACGGACG 62.020 66.667 10.41 0.00 46.80 4.79
561 571 2.143122 GCGAATCAGTTGACTTGTCCA 58.857 47.619 0.00 0.00 0.00 4.02
574 584 2.035237 TTGTCCACGAACGCCTTCCT 62.035 55.000 0.00 0.00 0.00 3.36
582 592 2.035576 ACGAACGCCTTCCTATACATCC 59.964 50.000 0.00 0.00 0.00 3.51
584 594 3.306088 CGAACGCCTTCCTATACATCCAT 60.306 47.826 0.00 0.00 0.00 3.41
617 629 8.408043 TCAAAGATCAATTAGTCAAATGTGGT 57.592 30.769 0.00 0.00 0.00 4.16
618 630 8.514594 TCAAAGATCAATTAGTCAAATGTGGTC 58.485 33.333 0.00 0.00 0.00 4.02
619 631 6.668541 AGATCAATTAGTCAAATGTGGTCG 57.331 37.500 0.00 0.00 0.00 4.79
620 632 5.586243 AGATCAATTAGTCAAATGTGGTCGG 59.414 40.000 0.00 0.00 0.00 4.79
621 633 4.900684 TCAATTAGTCAAATGTGGTCGGA 58.099 39.130 0.00 0.00 0.00 4.55
622 634 4.935205 TCAATTAGTCAAATGTGGTCGGAG 59.065 41.667 0.00 0.00 0.00 4.63
787 807 0.602905 CACACGTTTCCCACTCCCTC 60.603 60.000 0.00 0.00 0.00 4.30
873 893 3.795101 CACGAACCGAGTCATTATACCAC 59.205 47.826 0.00 0.00 0.00 4.16
878 898 3.516300 ACCGAGTCATTATACCACACCAA 59.484 43.478 0.00 0.00 0.00 3.67
918 939 2.679369 TACCACAAGCAGCAGCAGCA 62.679 55.000 12.92 0.00 45.49 4.41
953 974 1.128136 CTTCGACGCTCAAGTACTCGA 59.872 52.381 8.52 3.17 0.00 4.04
998 1019 1.424493 CTCTCGCACGGATCAAAGCC 61.424 60.000 0.00 0.00 0.00 4.35
1702 3256 4.351054 ACGAAGGGCCCAAGCTGG 62.351 66.667 27.56 9.10 39.73 4.85
1704 3258 2.966732 CGAAGGGCCCAAGCTGGTA 61.967 63.158 27.56 0.00 39.73 3.25
2081 3641 4.873129 CGGGGAGGTGACGATGCG 62.873 72.222 0.00 0.00 0.00 4.73
2358 3924 2.191109 GTGGTGTGGTCCAACGGT 59.809 61.111 0.00 0.00 39.34 4.83
2517 4083 1.287815 GTCGTCGGTCACCATCACA 59.712 57.895 0.00 0.00 0.00 3.58
2523 4089 0.740868 CGGTCACCATCACATCGCTT 60.741 55.000 0.00 0.00 0.00 4.68
2560 4126 3.384927 GCATCGCCACGTGTACTC 58.615 61.111 15.65 0.00 0.00 2.59
2562 4128 0.806102 GCATCGCCACGTGTACTCAT 60.806 55.000 15.65 0.00 0.00 2.90
2563 4129 1.640428 CATCGCCACGTGTACTCATT 58.360 50.000 15.65 0.00 0.00 2.57
2564 4130 1.999735 CATCGCCACGTGTACTCATTT 59.000 47.619 15.65 0.00 0.00 2.32
2598 4164 4.302455 CTTTTCTCGATCGATGCCAGTAT 58.698 43.478 19.78 0.00 0.00 2.12
2604 4170 2.987149 CGATCGATGCCAGTATTACACC 59.013 50.000 10.26 0.00 0.00 4.16
2612 4178 2.287788 GCCAGTATTACACCATGCATGC 60.288 50.000 21.69 11.82 0.00 4.06
2618 4187 1.496934 TACACCATGCATGCGATACG 58.503 50.000 21.69 8.92 0.00 3.06
2634 4203 3.127030 CGATACGCTAGCATGGAGTGATA 59.873 47.826 16.45 0.00 29.39 2.15
2678 4247 5.886960 TTCTTTTCCTAGCAAAGATGAGC 57.113 39.130 13.36 0.00 39.46 4.26
2682 4251 0.465705 CCTAGCAAAGATGAGCCCGA 59.534 55.000 0.00 0.00 0.00 5.14
2696 4265 0.397114 GCCCGATTTTTCCCAGGGAT 60.397 55.000 9.80 0.00 44.70 3.85
2700 4269 2.358195 CCGATTTTTCCCAGGGATCCTT 60.358 50.000 9.80 0.00 0.00 3.36
2718 4287 6.038714 GGATCCTTGGTGTATTGAGATGTTTC 59.961 42.308 3.84 0.00 0.00 2.78
2719 4288 5.253330 TCCTTGGTGTATTGAGATGTTTCC 58.747 41.667 0.00 0.00 0.00 3.13
2720 4289 5.014123 TCCTTGGTGTATTGAGATGTTTCCT 59.986 40.000 0.00 0.00 0.00 3.36
2721 4290 5.711976 CCTTGGTGTATTGAGATGTTTCCTT 59.288 40.000 0.00 0.00 0.00 3.36
2722 4291 6.349611 CCTTGGTGTATTGAGATGTTTCCTTG 60.350 42.308 0.00 0.00 0.00 3.61
2723 4292 5.630121 TGGTGTATTGAGATGTTTCCTTGT 58.370 37.500 0.00 0.00 0.00 3.16
2724 4293 5.473162 TGGTGTATTGAGATGTTTCCTTGTG 59.527 40.000 0.00 0.00 0.00 3.33
2725 4294 5.393962 GTGTATTGAGATGTTTCCTTGTGC 58.606 41.667 0.00 0.00 0.00 4.57
2726 4295 4.458989 TGTATTGAGATGTTTCCTTGTGCC 59.541 41.667 0.00 0.00 0.00 5.01
2727 4296 2.655090 TGAGATGTTTCCTTGTGCCA 57.345 45.000 0.00 0.00 0.00 4.92
2728 4297 2.507484 TGAGATGTTTCCTTGTGCCAG 58.493 47.619 0.00 0.00 0.00 4.85
2729 4298 2.158623 TGAGATGTTTCCTTGTGCCAGT 60.159 45.455 0.00 0.00 0.00 4.00
2730 4299 2.227388 GAGATGTTTCCTTGTGCCAGTG 59.773 50.000 0.00 0.00 0.00 3.66
2731 4300 0.675633 ATGTTTCCTTGTGCCAGTGC 59.324 50.000 0.00 0.00 38.26 4.40
2743 4315 0.108424 GCCAGTGCTAGTCAGTGAGG 60.108 60.000 18.08 8.09 46.64 3.86
2744 4316 1.550327 CCAGTGCTAGTCAGTGAGGA 58.450 55.000 18.08 0.00 46.64 3.71
2745 4317 2.106566 CCAGTGCTAGTCAGTGAGGAT 58.893 52.381 18.08 0.00 46.64 3.24
2747 4319 3.317711 CCAGTGCTAGTCAGTGAGGATAG 59.682 52.174 18.08 0.00 46.64 2.08
2749 4321 4.826733 CAGTGCTAGTCAGTGAGGATAGAT 59.173 45.833 13.57 0.00 46.64 1.98
2751 4323 4.824537 GTGCTAGTCAGTGAGGATAGATGA 59.175 45.833 9.94 0.00 0.00 2.92
2754 4326 3.843422 AGTCAGTGAGGATAGATGAGGG 58.157 50.000 0.00 0.00 0.00 4.30
2755 4327 2.896685 GTCAGTGAGGATAGATGAGGGG 59.103 54.545 0.00 0.00 0.00 4.79
2756 4328 2.158249 TCAGTGAGGATAGATGAGGGGG 60.158 54.545 0.00 0.00 0.00 5.40
2757 4329 2.156425 AGTGAGGATAGATGAGGGGGA 58.844 52.381 0.00 0.00 0.00 4.81
2758 4330 2.158234 AGTGAGGATAGATGAGGGGGAC 60.158 54.545 0.00 0.00 0.00 4.46
2760 4332 2.456340 TGAGGATAGATGAGGGGGACAT 59.544 50.000 0.00 0.00 0.00 3.06
2761 4333 2.836981 GAGGATAGATGAGGGGGACATG 59.163 54.545 0.00 0.00 0.00 3.21
2837 4414 4.698575 AGGACCGATCAAGATTCTAAAGC 58.301 43.478 0.00 0.00 0.00 3.51
2839 4416 4.876107 GGACCGATCAAGATTCTAAAGCAA 59.124 41.667 0.00 0.00 0.00 3.91
2941 4518 6.431852 TGGGACTAATTTAACAGCAAACCTAC 59.568 38.462 0.00 0.00 0.00 3.18
2960 4537 0.749454 CCCTCCTTGGCTCCATTTCG 60.749 60.000 0.00 0.00 0.00 3.46
2981 4558 9.636879 ATTTCGTTCTCTCTATGATCATACATG 57.363 33.333 11.49 2.92 0.00 3.21
2984 4561 5.929058 TCTCTCTATGATCATACATGGGC 57.071 43.478 11.49 0.00 31.32 5.36
2986 4563 3.448660 TCTCTATGATCATACATGGGCCG 59.551 47.826 11.49 0.09 31.32 6.13
2988 4565 0.322816 ATGATCATACATGGGCCGGC 60.323 55.000 21.18 21.18 0.00 6.13
2989 4566 1.675641 GATCATACATGGGCCGGCC 60.676 63.158 38.57 38.57 0.00 6.13
2990 4567 3.551496 ATCATACATGGGCCGGCCG 62.551 63.158 38.22 27.04 36.85 6.13
3030 4613 2.049156 GACCGGGCTTGCAAAAGC 60.049 61.111 6.32 0.17 44.76 3.51
3048 4673 3.149005 AGCCCGATCCTTAAACAACAA 57.851 42.857 0.00 0.00 0.00 2.83
3068 4693 2.259917 AGCCCAAAGCCTAAAAATGCT 58.740 42.857 0.00 0.00 45.47 3.79
3107 4732 6.363167 TTTGATCCCATCTTGAAAAGCAAT 57.637 33.333 0.00 0.00 45.70 3.56
3122 4747 0.108662 GCAATCCAAAAGCCCGGAAG 60.109 55.000 0.73 0.00 34.22 3.46
3201 4826 3.521452 AAGCCCAAGCCCAACCCT 61.521 61.111 0.00 0.00 41.25 4.34
3202 4827 3.833553 AAGCCCAAGCCCAACCCTG 62.834 63.158 0.00 0.00 41.25 4.45
3203 4828 4.621087 GCCCAAGCCCAACCCTGT 62.621 66.667 0.00 0.00 0.00 4.00
3204 4829 2.201210 CCCAAGCCCAACCCTGTT 59.799 61.111 0.00 0.00 0.00 3.16
3205 4830 2.209315 CCCAAGCCCAACCCTGTTG 61.209 63.158 0.00 0.00 0.00 3.33
3206 4831 1.152567 CCAAGCCCAACCCTGTTGA 60.153 57.895 8.47 0.00 0.00 3.18
3207 4832 0.758685 CCAAGCCCAACCCTGTTGAA 60.759 55.000 8.47 0.00 0.00 2.69
3208 4833 0.389025 CAAGCCCAACCCTGTTGAAC 59.611 55.000 8.47 0.00 0.00 3.18
3209 4834 0.032615 AAGCCCAACCCTGTTGAACA 60.033 50.000 8.47 0.00 0.00 3.18
3210 4835 0.188342 AGCCCAACCCTGTTGAACAT 59.812 50.000 8.47 0.00 0.00 2.71
3211 4836 0.318120 GCCCAACCCTGTTGAACATG 59.682 55.000 8.47 0.00 0.00 3.21
3212 4837 0.318120 CCCAACCCTGTTGAACATGC 59.682 55.000 8.47 0.00 0.00 4.06
3213 4838 1.039068 CCAACCCTGTTGAACATGCA 58.961 50.000 8.47 0.00 0.00 3.96
3214 4839 1.269726 CCAACCCTGTTGAACATGCAC 60.270 52.381 8.47 0.00 0.00 4.57
3215 4840 1.408340 CAACCCTGTTGAACATGCACA 59.592 47.619 0.00 0.00 0.00 4.57
3216 4841 1.999648 ACCCTGTTGAACATGCACAT 58.000 45.000 0.00 0.00 0.00 3.21
3217 4842 3.153369 ACCCTGTTGAACATGCACATA 57.847 42.857 0.00 0.00 0.00 2.29
3218 4843 2.819608 ACCCTGTTGAACATGCACATAC 59.180 45.455 0.00 0.00 0.00 2.39
3219 4844 2.159531 CCCTGTTGAACATGCACATACG 60.160 50.000 0.00 0.00 0.00 3.06
3220 4845 2.483877 CCTGTTGAACATGCACATACGT 59.516 45.455 0.00 0.00 0.00 3.57
3221 4846 3.682377 CCTGTTGAACATGCACATACGTA 59.318 43.478 0.00 0.00 0.00 3.57
3222 4847 4.332543 CCTGTTGAACATGCACATACGTAT 59.667 41.667 1.14 1.14 0.00 3.06
3223 4848 5.522097 CCTGTTGAACATGCACATACGTATA 59.478 40.000 7.96 0.00 0.00 1.47
3224 4849 6.202762 CCTGTTGAACATGCACATACGTATAT 59.797 38.462 7.96 0.00 0.00 0.86
3225 4850 7.383843 CCTGTTGAACATGCACATACGTATATA 59.616 37.037 7.96 0.00 0.00 0.86
3226 4851 8.293114 TGTTGAACATGCACATACGTATATAG 57.707 34.615 7.96 2.41 0.00 1.31
3227 4852 7.383843 TGTTGAACATGCACATACGTATATAGG 59.616 37.037 7.96 0.00 0.00 2.57
3228 4853 6.988522 TGAACATGCACATACGTATATAGGT 58.011 36.000 7.96 12.40 0.00 3.08
3229 4854 7.088272 TGAACATGCACATACGTATATAGGTC 58.912 38.462 7.96 4.56 0.00 3.85
3230 4855 6.835819 ACATGCACATACGTATATAGGTCT 57.164 37.500 7.96 0.00 0.00 3.85
3231 4856 6.621613 ACATGCACATACGTATATAGGTCTG 58.378 40.000 7.96 13.71 0.00 3.51
3232 4857 5.638596 TGCACATACGTATATAGGTCTGG 57.361 43.478 19.17 12.10 0.00 3.86
3233 4858 4.461431 TGCACATACGTATATAGGTCTGGG 59.539 45.833 19.17 17.30 0.00 4.45
3234 4859 4.461781 GCACATACGTATATAGGTCTGGGT 59.538 45.833 18.72 9.08 0.00 4.51
3235 4860 5.649395 GCACATACGTATATAGGTCTGGGTA 59.351 44.000 18.72 1.84 0.00 3.69
3236 4861 6.320672 GCACATACGTATATAGGTCTGGGTAT 59.679 42.308 18.72 3.73 0.00 2.73
3237 4862 7.147949 GCACATACGTATATAGGTCTGGGTATT 60.148 40.741 18.72 1.98 0.00 1.89
3238 4863 8.188799 CACATACGTATATAGGTCTGGGTATTG 58.811 40.741 19.17 8.83 0.00 1.90
3239 4864 7.892241 ACATACGTATATAGGTCTGGGTATTGT 59.108 37.037 19.17 0.00 0.00 2.71
3240 4865 9.399797 CATACGTATATAGGTCTGGGTATTGTA 57.600 37.037 7.96 0.00 0.00 2.41
3241 4866 7.693969 ACGTATATAGGTCTGGGTATTGTAC 57.306 40.000 2.21 0.00 0.00 2.90
3242 4867 6.372659 ACGTATATAGGTCTGGGTATTGTACG 59.627 42.308 2.21 0.00 36.90 3.67
3243 4868 6.372659 CGTATATAGGTCTGGGTATTGTACGT 59.627 42.308 0.00 0.00 0.00 3.57
3244 4869 7.094634 CGTATATAGGTCTGGGTATTGTACGTT 60.095 40.741 0.00 0.00 0.00 3.99
3245 4870 3.604875 AGGTCTGGGTATTGTACGTTG 57.395 47.619 0.00 0.00 0.00 4.10
3246 4871 2.004733 GGTCTGGGTATTGTACGTTGC 58.995 52.381 0.00 0.00 0.00 4.17
3247 4872 2.613474 GGTCTGGGTATTGTACGTTGCA 60.613 50.000 0.00 0.00 0.00 4.08
3248 4873 2.414138 GTCTGGGTATTGTACGTTGCAC 59.586 50.000 0.00 0.00 0.00 4.57
3249 4874 1.735571 CTGGGTATTGTACGTTGCACC 59.264 52.381 0.00 0.00 0.00 5.01
3250 4875 1.348366 TGGGTATTGTACGTTGCACCT 59.652 47.619 0.00 0.00 0.00 4.00
3251 4876 1.735571 GGGTATTGTACGTTGCACCTG 59.264 52.381 0.00 0.00 0.00 4.00
3252 4877 2.419667 GGTATTGTACGTTGCACCTGT 58.580 47.619 0.00 0.00 0.00 4.00
3253 4878 3.587923 GGTATTGTACGTTGCACCTGTA 58.412 45.455 0.00 0.00 0.00 2.74
3254 4879 3.615496 GGTATTGTACGTTGCACCTGTAG 59.385 47.826 0.00 0.00 0.00 2.74
3255 4880 1.504359 TTGTACGTTGCACCTGTAGC 58.496 50.000 0.00 0.00 0.00 3.58
3256 4881 0.665068 TGTACGTTGCACCTGTAGCG 60.665 55.000 0.00 0.00 39.82 4.26
3257 4882 0.665369 GTACGTTGCACCTGTAGCGT 60.665 55.000 9.86 9.86 46.91 5.07
3258 4883 0.387622 TACGTTGCACCTGTAGCGTC 60.388 55.000 8.41 0.00 42.79 5.19
3259 4884 1.372997 CGTTGCACCTGTAGCGTCT 60.373 57.895 0.00 0.00 33.85 4.18
3260 4885 1.344942 CGTTGCACCTGTAGCGTCTC 61.345 60.000 0.00 0.00 33.85 3.36
3261 4886 0.038159 GTTGCACCTGTAGCGTCTCT 60.038 55.000 0.00 0.00 33.85 3.10
3262 4887 0.243907 TTGCACCTGTAGCGTCTCTC 59.756 55.000 0.00 0.00 33.85 3.20
3263 4888 0.609406 TGCACCTGTAGCGTCTCTCT 60.609 55.000 0.00 0.00 33.85 3.10
3264 4889 0.528470 GCACCTGTAGCGTCTCTCTT 59.472 55.000 0.00 0.00 0.00 2.85
3265 4890 1.468395 GCACCTGTAGCGTCTCTCTTC 60.468 57.143 0.00 0.00 0.00 2.87
3266 4891 1.133407 CACCTGTAGCGTCTCTCTTCC 59.867 57.143 0.00 0.00 0.00 3.46
3267 4892 0.741915 CCTGTAGCGTCTCTCTTCCC 59.258 60.000 0.00 0.00 0.00 3.97
3268 4893 1.683629 CCTGTAGCGTCTCTCTTCCCT 60.684 57.143 0.00 0.00 0.00 4.20
3269 4894 1.673920 CTGTAGCGTCTCTCTTCCCTC 59.326 57.143 0.00 0.00 0.00 4.30
3270 4895 1.282447 TGTAGCGTCTCTCTTCCCTCT 59.718 52.381 0.00 0.00 0.00 3.69
3271 4896 1.673920 GTAGCGTCTCTCTTCCCTCTG 59.326 57.143 0.00 0.00 0.00 3.35
3272 4897 0.039035 AGCGTCTCTCTTCCCTCTGT 59.961 55.000 0.00 0.00 0.00 3.41
3273 4898 1.282447 AGCGTCTCTCTTCCCTCTGTA 59.718 52.381 0.00 0.00 0.00 2.74
3274 4899 2.093106 GCGTCTCTCTTCCCTCTGTAA 58.907 52.381 0.00 0.00 0.00 2.41
3275 4900 2.159352 GCGTCTCTCTTCCCTCTGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3276 4901 3.349022 CGTCTCTCTTCCCTCTGTAACT 58.651 50.000 0.00 0.00 0.00 2.24
3277 4902 3.759618 CGTCTCTCTTCCCTCTGTAACTT 59.240 47.826 0.00 0.00 0.00 2.66
3278 4903 4.380023 CGTCTCTCTTCCCTCTGTAACTTG 60.380 50.000 0.00 0.00 0.00 3.16
3279 4904 4.525100 GTCTCTCTTCCCTCTGTAACTTGT 59.475 45.833 0.00 0.00 0.00 3.16
3280 4905 5.011227 GTCTCTCTTCCCTCTGTAACTTGTT 59.989 44.000 0.00 0.00 0.00 2.83
3281 4906 5.011125 TCTCTCTTCCCTCTGTAACTTGTTG 59.989 44.000 0.00 0.00 0.00 3.33
3282 4907 4.654262 TCTCTTCCCTCTGTAACTTGTTGT 59.346 41.667 0.00 0.00 0.00 3.32
3283 4908 5.836898 TCTCTTCCCTCTGTAACTTGTTGTA 59.163 40.000 0.00 0.00 0.00 2.41
3284 4909 6.497259 TCTCTTCCCTCTGTAACTTGTTGTAT 59.503 38.462 0.00 0.00 0.00 2.29
3285 4910 6.698380 TCTTCCCTCTGTAACTTGTTGTATC 58.302 40.000 0.00 0.00 0.00 2.24
3286 4911 6.497259 TCTTCCCTCTGTAACTTGTTGTATCT 59.503 38.462 0.00 0.00 0.00 1.98
3287 4912 6.681729 TCCCTCTGTAACTTGTTGTATCTT 57.318 37.500 0.00 0.00 0.00 2.40
3288 4913 6.464222 TCCCTCTGTAACTTGTTGTATCTTG 58.536 40.000 0.00 0.00 0.00 3.02
3289 4914 5.643777 CCCTCTGTAACTTGTTGTATCTTGG 59.356 44.000 0.00 0.00 0.00 3.61
3290 4915 5.643777 CCTCTGTAACTTGTTGTATCTTGGG 59.356 44.000 0.00 0.00 0.00 4.12
3291 4916 6.428083 TCTGTAACTTGTTGTATCTTGGGA 57.572 37.500 0.00 0.00 0.00 4.37
3292 4917 6.464222 TCTGTAACTTGTTGTATCTTGGGAG 58.536 40.000 0.00 0.00 0.00 4.30
3293 4918 6.269077 TCTGTAACTTGTTGTATCTTGGGAGA 59.731 38.462 0.00 0.00 36.09 3.71
3294 4919 6.228258 TGTAACTTGTTGTATCTTGGGAGAC 58.772 40.000 0.00 0.00 33.99 3.36
3295 4920 4.974645 ACTTGTTGTATCTTGGGAGACA 57.025 40.909 0.00 0.00 41.21 3.41
3296 4921 5.304686 ACTTGTTGTATCTTGGGAGACAA 57.695 39.130 2.68 2.68 46.94 3.18
3305 4930 1.801242 TTGGGAGACAAGACACCAGA 58.199 50.000 0.00 0.00 33.18 3.86
3306 4931 1.048601 TGGGAGACAAGACACCAGAC 58.951 55.000 0.00 0.00 0.00 3.51
3307 4932 0.038159 GGGAGACAAGACACCAGACG 60.038 60.000 0.00 0.00 0.00 4.18
3308 4933 0.959553 GGAGACAAGACACCAGACGA 59.040 55.000 0.00 0.00 0.00 4.20
3309 4934 1.340248 GGAGACAAGACACCAGACGAA 59.660 52.381 0.00 0.00 0.00 3.85
3310 4935 2.395654 GAGACAAGACACCAGACGAAC 58.604 52.381 0.00 0.00 0.00 3.95
3311 4936 1.068741 AGACAAGACACCAGACGAACC 59.931 52.381 0.00 0.00 0.00 3.62
3312 4937 0.106149 ACAAGACACCAGACGAACCC 59.894 55.000 0.00 0.00 0.00 4.11
3313 4938 0.602905 CAAGACACCAGACGAACCCC 60.603 60.000 0.00 0.00 0.00 4.95
3314 4939 0.763223 AAGACACCAGACGAACCCCT 60.763 55.000 0.00 0.00 0.00 4.79
3315 4940 0.763223 AGACACCAGACGAACCCCTT 60.763 55.000 0.00 0.00 0.00 3.95
3316 4941 0.602905 GACACCAGACGAACCCCTTG 60.603 60.000 0.00 0.00 0.00 3.61
3317 4942 1.342672 ACACCAGACGAACCCCTTGT 61.343 55.000 0.00 0.00 0.00 3.16
3318 4943 0.682852 CACCAGACGAACCCCTTGTA 59.317 55.000 0.00 0.00 0.00 2.41
3319 4944 1.278127 CACCAGACGAACCCCTTGTAT 59.722 52.381 0.00 0.00 0.00 2.29
3320 4945 1.553704 ACCAGACGAACCCCTTGTATC 59.446 52.381 0.00 0.00 0.00 2.24
3321 4946 1.831736 CCAGACGAACCCCTTGTATCT 59.168 52.381 0.00 0.00 0.00 1.98
3322 4947 3.028850 CCAGACGAACCCCTTGTATCTA 58.971 50.000 0.00 0.00 0.00 1.98
3323 4948 3.641906 CCAGACGAACCCCTTGTATCTAT 59.358 47.826 0.00 0.00 0.00 1.98
3324 4949 4.831155 CCAGACGAACCCCTTGTATCTATA 59.169 45.833 0.00 0.00 0.00 1.31
3325 4950 5.480772 CCAGACGAACCCCTTGTATCTATAT 59.519 44.000 0.00 0.00 0.00 0.86
3326 4951 6.662234 CCAGACGAACCCCTTGTATCTATATA 59.338 42.308 0.00 0.00 0.00 0.86
3327 4952 7.342284 CCAGACGAACCCCTTGTATCTATATAT 59.658 40.741 0.00 0.00 0.00 0.86
3328 4953 8.191446 CAGACGAACCCCTTGTATCTATATATG 58.809 40.741 0.00 0.00 0.00 1.78
3329 4954 7.894364 AGACGAACCCCTTGTATCTATATATGT 59.106 37.037 0.00 0.00 0.00 2.29
3330 4955 7.837863 ACGAACCCCTTGTATCTATATATGTG 58.162 38.462 0.00 0.00 0.00 3.21
3331 4956 6.757010 CGAACCCCTTGTATCTATATATGTGC 59.243 42.308 0.00 0.00 0.00 4.57
3332 4957 6.561519 ACCCCTTGTATCTATATATGTGCC 57.438 41.667 0.00 0.00 0.00 5.01
3333 4958 6.272320 ACCCCTTGTATCTATATATGTGCCT 58.728 40.000 0.00 0.00 0.00 4.75
3334 4959 7.427501 ACCCCTTGTATCTATATATGTGCCTA 58.572 38.462 0.00 0.00 0.00 3.93
3335 4960 7.565398 ACCCCTTGTATCTATATATGTGCCTAG 59.435 40.741 0.00 0.00 0.00 3.02
3336 4961 7.565398 CCCCTTGTATCTATATATGTGCCTAGT 59.435 40.741 0.00 0.00 0.00 2.57
3337 4962 8.417106 CCCTTGTATCTATATATGTGCCTAGTG 58.583 40.741 0.00 0.00 0.00 2.74
3338 4963 7.923344 CCTTGTATCTATATATGTGCCTAGTGC 59.077 40.741 0.00 0.00 41.77 4.40
3349 4974 1.939974 GCCTAGTGCACGATCAATGA 58.060 50.000 12.01 0.00 40.77 2.57
3350 4975 1.863454 GCCTAGTGCACGATCAATGAG 59.137 52.381 12.01 0.23 40.77 2.90
3351 4976 2.481969 GCCTAGTGCACGATCAATGAGA 60.482 50.000 12.01 0.00 40.77 3.27
3352 4977 3.785486 CCTAGTGCACGATCAATGAGAA 58.215 45.455 12.01 0.00 0.00 2.87
3353 4978 4.375272 CCTAGTGCACGATCAATGAGAAT 58.625 43.478 12.01 0.00 0.00 2.40
3354 4979 4.813161 CCTAGTGCACGATCAATGAGAATT 59.187 41.667 12.01 0.00 0.00 2.17
3355 4980 5.985530 CCTAGTGCACGATCAATGAGAATTA 59.014 40.000 12.01 0.00 0.00 1.40
3356 4981 6.648310 CCTAGTGCACGATCAATGAGAATTAT 59.352 38.462 12.01 0.00 0.00 1.28
3357 4982 6.536731 AGTGCACGATCAATGAGAATTATC 57.463 37.500 12.01 0.00 0.00 1.75
3358 4983 5.176406 AGTGCACGATCAATGAGAATTATCG 59.824 40.000 12.01 0.00 43.73 2.92
3359 4984 5.175673 GTGCACGATCAATGAGAATTATCGA 59.824 40.000 0.00 0.00 41.38 3.59
3360 4985 5.928264 TGCACGATCAATGAGAATTATCGAT 59.072 36.000 2.16 2.16 41.38 3.59
3361 4986 6.128742 TGCACGATCAATGAGAATTATCGATG 60.129 38.462 8.54 5.34 41.38 3.84
3362 4987 6.239226 CACGATCAATGAGAATTATCGATGC 58.761 40.000 8.54 0.00 41.38 3.91
3363 4988 5.928264 ACGATCAATGAGAATTATCGATGCA 59.072 36.000 8.54 0.00 41.38 3.96
3364 4989 6.128715 ACGATCAATGAGAATTATCGATGCAC 60.129 38.462 8.54 0.00 41.38 4.57
3365 4990 6.128742 CGATCAATGAGAATTATCGATGCACA 60.129 38.462 8.54 0.47 41.38 4.57
3366 4991 6.291067 TCAATGAGAATTATCGATGCACAC 57.709 37.500 8.54 0.00 0.00 3.82
3367 4992 5.816777 TCAATGAGAATTATCGATGCACACA 59.183 36.000 8.54 2.08 0.00 3.72
3368 4993 6.315891 TCAATGAGAATTATCGATGCACACAA 59.684 34.615 8.54 0.00 0.00 3.33
3369 4994 6.872628 ATGAGAATTATCGATGCACACAAT 57.127 33.333 8.54 0.00 0.00 2.71
3370 4995 6.291067 TGAGAATTATCGATGCACACAATC 57.709 37.500 8.54 0.00 0.00 2.67
3371 4996 5.237127 TGAGAATTATCGATGCACACAATCC 59.763 40.000 8.54 0.00 0.00 3.01
3372 4997 4.516698 AGAATTATCGATGCACACAATCCC 59.483 41.667 8.54 0.00 0.00 3.85
3373 4998 3.558931 TTATCGATGCACACAATCCCT 57.441 42.857 8.54 0.00 0.00 4.20
3374 4999 2.425143 ATCGATGCACACAATCCCTT 57.575 45.000 0.00 0.00 0.00 3.95
3375 5000 2.198827 TCGATGCACACAATCCCTTT 57.801 45.000 0.00 0.00 0.00 3.11
3376 5001 2.083774 TCGATGCACACAATCCCTTTC 58.916 47.619 0.00 0.00 0.00 2.62
3377 5002 2.086869 CGATGCACACAATCCCTTTCT 58.913 47.619 0.00 0.00 0.00 2.52
3378 5003 2.096496 CGATGCACACAATCCCTTTCTC 59.904 50.000 0.00 0.00 0.00 2.87
3379 5004 1.909700 TGCACACAATCCCTTTCTCC 58.090 50.000 0.00 0.00 0.00 3.71
3380 5005 1.177401 GCACACAATCCCTTTCTCCC 58.823 55.000 0.00 0.00 0.00 4.30
3381 5006 1.547675 GCACACAATCCCTTTCTCCCA 60.548 52.381 0.00 0.00 0.00 4.37
3382 5007 2.875296 CACACAATCCCTTTCTCCCAA 58.125 47.619 0.00 0.00 0.00 4.12
3383 5008 3.230134 CACACAATCCCTTTCTCCCAAA 58.770 45.455 0.00 0.00 0.00 3.28
3384 5009 3.834231 CACACAATCCCTTTCTCCCAAAT 59.166 43.478 0.00 0.00 0.00 2.32
3385 5010 4.284234 CACACAATCCCTTTCTCCCAAATT 59.716 41.667 0.00 0.00 0.00 1.82
3386 5011 4.907269 ACACAATCCCTTTCTCCCAAATTT 59.093 37.500 0.00 0.00 0.00 1.82
3387 5012 6.014669 CACACAATCCCTTTCTCCCAAATTTA 60.015 38.462 0.00 0.00 0.00 1.40
3388 5013 6.730507 ACACAATCCCTTTCTCCCAAATTTAT 59.269 34.615 0.00 0.00 0.00 1.40
3389 5014 7.898636 ACACAATCCCTTTCTCCCAAATTTATA 59.101 33.333 0.00 0.00 0.00 0.98
3390 5015 8.927411 CACAATCCCTTTCTCCCAAATTTATAT 58.073 33.333 0.00 0.00 0.00 0.86
3391 5016 8.927411 ACAATCCCTTTCTCCCAAATTTATATG 58.073 33.333 0.00 0.00 0.00 1.78
3392 5017 8.370182 CAATCCCTTTCTCCCAAATTTATATGG 58.630 37.037 0.00 0.00 36.42 2.74
3393 5018 6.992235 TCCCTTTCTCCCAAATTTATATGGT 58.008 36.000 0.00 0.00 34.79 3.55
3394 5019 8.120256 TCCCTTTCTCCCAAATTTATATGGTA 57.880 34.615 0.00 0.00 34.79 3.25
3395 5020 8.742437 TCCCTTTCTCCCAAATTTATATGGTAT 58.258 33.333 0.00 0.00 34.79 2.73
3396 5021 9.025041 CCCTTTCTCCCAAATTTATATGGTATC 57.975 37.037 0.00 0.00 34.79 2.24
3397 5022 9.586732 CCTTTCTCCCAAATTTATATGGTATCA 57.413 33.333 0.00 0.00 34.79 2.15
3414 5039 6.777213 GGTATCAGATACCGTATTGATCCT 57.223 41.667 21.68 0.00 45.20 3.24
3415 5040 7.171630 GGTATCAGATACCGTATTGATCCTT 57.828 40.000 21.68 2.31 45.20 3.36
3416 5041 7.036220 GGTATCAGATACCGTATTGATCCTTG 58.964 42.308 21.68 0.00 45.20 3.61
3417 5042 4.883083 TCAGATACCGTATTGATCCTTGC 58.117 43.478 0.00 0.00 0.00 4.01
3418 5043 3.997021 CAGATACCGTATTGATCCTTGCC 59.003 47.826 0.00 0.00 0.00 4.52
3419 5044 3.904339 AGATACCGTATTGATCCTTGCCT 59.096 43.478 0.00 0.00 0.00 4.75
3420 5045 5.047306 CAGATACCGTATTGATCCTTGCCTA 60.047 44.000 0.00 0.00 0.00 3.93
3421 5046 5.542635 AGATACCGTATTGATCCTTGCCTAA 59.457 40.000 0.00 0.00 0.00 2.69
3422 5047 4.497291 ACCGTATTGATCCTTGCCTAAA 57.503 40.909 0.00 0.00 0.00 1.85
3423 5048 4.196971 ACCGTATTGATCCTTGCCTAAAC 58.803 43.478 0.00 0.00 0.00 2.01
3424 5049 3.564225 CCGTATTGATCCTTGCCTAAACC 59.436 47.826 0.00 0.00 0.00 3.27
3425 5050 3.247648 CGTATTGATCCTTGCCTAAACCG 59.752 47.826 0.00 0.00 0.00 4.44
3426 5051 1.459450 TTGATCCTTGCCTAAACCGC 58.541 50.000 0.00 0.00 0.00 5.68
3427 5052 0.618458 TGATCCTTGCCTAAACCGCT 59.382 50.000 0.00 0.00 0.00 5.52
3428 5053 1.004277 TGATCCTTGCCTAAACCGCTT 59.996 47.619 0.00 0.00 0.00 4.68
3429 5054 1.671328 GATCCTTGCCTAAACCGCTTC 59.329 52.381 0.00 0.00 0.00 3.86
3430 5055 0.322187 TCCTTGCCTAAACCGCTTCC 60.322 55.000 0.00 0.00 0.00 3.46
3431 5056 1.644786 CCTTGCCTAAACCGCTTCCG 61.645 60.000 0.00 0.00 0.00 4.30
3432 5057 2.253414 CTTGCCTAAACCGCTTCCGC 62.253 60.000 0.00 0.00 0.00 5.54
3433 5058 2.744709 GCCTAAACCGCTTCCGCA 60.745 61.111 0.00 0.00 35.30 5.69
3434 5059 2.329614 GCCTAAACCGCTTCCGCAA 61.330 57.895 0.00 0.00 35.30 4.85
3435 5060 1.500396 CCTAAACCGCTTCCGCAAC 59.500 57.895 0.00 0.00 35.30 4.17
3436 5061 1.500396 CTAAACCGCTTCCGCAACC 59.500 57.895 0.00 0.00 35.30 3.77
3437 5062 1.918868 CTAAACCGCTTCCGCAACCC 61.919 60.000 0.00 0.00 35.30 4.11
3438 5063 2.400269 TAAACCGCTTCCGCAACCCT 62.400 55.000 0.00 0.00 35.30 4.34
3439 5064 2.400269 AAACCGCTTCCGCAACCCTA 62.400 55.000 0.00 0.00 35.30 3.53
3440 5065 2.511600 CCGCTTCCGCAACCCTAG 60.512 66.667 0.00 0.00 35.30 3.02
3441 5066 3.195698 CGCTTCCGCAACCCTAGC 61.196 66.667 0.00 0.00 35.30 3.42
3442 5067 2.824489 GCTTCCGCAACCCTAGCC 60.824 66.667 0.00 0.00 35.78 3.93
3443 5068 2.511600 CTTCCGCAACCCTAGCCG 60.512 66.667 0.00 0.00 0.00 5.52
3444 5069 4.770874 TTCCGCAACCCTAGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
3498 5123 4.847444 GCCGCTGCTCCTTCCCTC 62.847 72.222 0.00 0.00 33.53 4.30
3499 5124 4.521062 CCGCTGCTCCTTCCCTCG 62.521 72.222 0.00 0.00 0.00 4.63
3501 5126 4.087892 GCTGCTCCTTCCCTCGCA 62.088 66.667 0.00 0.00 0.00 5.10
3502 5127 2.186384 CTGCTCCTTCCCTCGCAG 59.814 66.667 0.00 0.00 43.10 5.18
3503 5128 4.087892 TGCTCCTTCCCTCGCAGC 62.088 66.667 0.00 0.00 0.00 5.25
3504 5129 4.847444 GCTCCTTCCCTCGCAGCC 62.847 72.222 0.00 0.00 0.00 4.85
3505 5130 4.521062 CTCCTTCCCTCGCAGCCG 62.521 72.222 0.00 0.00 0.00 5.52
3523 5148 3.953775 CTCCACCCCAACAGCCGT 61.954 66.667 0.00 0.00 0.00 5.68
3524 5149 3.491598 CTCCACCCCAACAGCCGTT 62.492 63.158 0.00 0.00 35.01 4.44
3531 5156 4.980903 CAACAGCCGTTGCGCCAC 62.981 66.667 4.18 2.21 45.64 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.534476 TGCCCTGAGACCCGTGTTA 60.534 57.895 0.00 0.00 0.00 2.41
19 20 2.847234 TGCCCTGAGACCCGTGTT 60.847 61.111 0.00 0.00 0.00 3.32
22 23 3.626924 GTGTGCCCTGAGACCCGT 61.627 66.667 0.00 0.00 0.00 5.28
23 24 3.596066 CTGTGTGCCCTGAGACCCG 62.596 68.421 0.00 0.00 0.00 5.28
24 25 2.348998 CTGTGTGCCCTGAGACCC 59.651 66.667 0.00 0.00 0.00 4.46
28 29 2.177594 GAGGACCTGTGTGCCCTGAG 62.178 65.000 0.00 0.00 32.35 3.35
30 31 1.845627 ATGAGGACCTGTGTGCCCTG 61.846 60.000 0.00 0.00 32.35 4.45
38 39 2.046892 GCACGCATGAGGACCTGT 60.047 61.111 0.00 0.00 0.00 4.00
60 61 7.708752 ACGTTTGAAAATCAGAAGCCAAAAATA 59.291 29.630 0.00 0.00 0.00 1.40
105 106 9.826574 ATACGAAAGCATTACTTATTTGGACTA 57.173 29.630 0.00 0.00 37.75 2.59
119 120 6.315393 ACTGGAAATACGAATACGAAAGCATT 59.685 34.615 0.00 0.00 42.66 3.56
128 129 6.292381 GCACTCATCACTGGAAATACGAATAC 60.292 42.308 0.00 0.00 0.00 1.89
141 142 7.137490 TCTTATTTGAAAGCACTCATCACTG 57.863 36.000 0.00 0.00 0.00 3.66
142 143 7.066766 GGATCTTATTTGAAAGCACTCATCACT 59.933 37.037 0.00 0.00 0.00 3.41
147 148 7.707624 AATGGATCTTATTTGAAAGCACTCA 57.292 32.000 0.00 0.00 0.00 3.41
214 217 7.959651 GTCGATCGTACTAAGTTTGAAGAGTTA 59.040 37.037 15.94 0.00 0.00 2.24
236 239 7.483375 CGCCAAAATTGTGATTTTATTAGTCGA 59.517 33.333 0.00 0.00 42.14 4.20
241 244 6.402222 AGGCGCCAAAATTGTGATTTTATTA 58.598 32.000 31.54 0.00 42.14 0.98
252 255 2.030363 TCAGTTGTAGGCGCCAAAATTG 60.030 45.455 31.54 23.63 0.00 2.32
253 256 2.030274 GTCAGTTGTAGGCGCCAAAATT 60.030 45.455 31.54 13.40 0.00 1.82
259 262 0.948678 TTTTGTCAGTTGTAGGCGCC 59.051 50.000 21.89 21.89 0.00 6.53
296 299 7.921214 TCGCTCTTACCAAGTTTCATAGATAAG 59.079 37.037 0.00 0.00 0.00 1.73
321 324 3.363178 CAAACTTGTGGTTTTCTCGCTC 58.637 45.455 0.00 0.00 44.77 5.03
363 366 9.180678 CATAGCAAGTTTTAATTTCAGTCGTTT 57.819 29.630 0.00 0.00 0.00 3.60
375 378 2.422127 GCGAGGGCATAGCAAGTTTTAA 59.578 45.455 0.00 0.00 39.62 1.52
396 401 2.349438 CGTGAAGTTGTTGAATCCCACG 60.349 50.000 0.00 0.00 39.74 4.94
439 445 1.616327 ACCTGCCATGTCCTGCCTA 60.616 57.895 0.00 0.00 0.00 3.93
440 446 2.937689 ACCTGCCATGTCCTGCCT 60.938 61.111 0.00 0.00 0.00 4.75
445 455 3.434319 CACGCACCTGCCATGTCC 61.434 66.667 0.00 0.00 37.91 4.02
468 478 5.234757 CCATACAAATGCATCGGAAATTTGG 59.765 40.000 19.52 0.00 42.78 3.28
470 480 5.976458 ACCATACAAATGCATCGGAAATTT 58.024 33.333 0.00 0.00 0.00 1.82
537 547 4.398247 GACAAGTCAACTGATTCGCATTC 58.602 43.478 0.00 0.00 0.00 2.67
561 571 2.035576 GGATGTATAGGAAGGCGTTCGT 59.964 50.000 17.30 17.30 35.06 3.85
769 789 1.752833 GAGGGAGTGGGAAACGTGT 59.247 57.895 0.00 0.00 0.00 4.49
852 872 3.444742 TGTGGTATAATGACTCGGTTCGT 59.555 43.478 0.00 0.00 0.00 3.85
873 893 2.126596 TGCTGGTGCTGGTTTGGTG 61.127 57.895 0.00 0.00 40.48 4.17
878 898 2.901840 CGTGTGCTGGTGCTGGTT 60.902 61.111 0.00 0.00 40.48 3.67
899 920 1.968017 GCTGCTGCTGCTTGTGGTA 60.968 57.895 22.10 0.00 40.48 3.25
926 947 2.504244 GAGCGTCGAAGTCCACGG 60.504 66.667 0.00 0.00 36.50 4.94
927 948 1.337817 CTTGAGCGTCGAAGTCCACG 61.338 60.000 0.00 0.00 39.09 4.94
929 950 1.068748 GTACTTGAGCGTCGAAGTCCA 60.069 52.381 0.00 0.00 34.28 4.02
930 951 1.199558 AGTACTTGAGCGTCGAAGTCC 59.800 52.381 0.00 0.00 34.28 3.85
931 952 2.507866 GAGTACTTGAGCGTCGAAGTC 58.492 52.381 0.00 0.00 34.28 3.01
932 953 1.136029 CGAGTACTTGAGCGTCGAAGT 60.136 52.381 3.81 0.00 36.40 3.01
933 954 1.128136 TCGAGTACTTGAGCGTCGAAG 59.872 52.381 8.87 0.00 36.76 3.79
934 955 1.128136 CTCGAGTACTTGAGCGTCGAA 59.872 52.381 24.10 0.00 39.04 3.71
935 956 0.720027 CTCGAGTACTTGAGCGTCGA 59.280 55.000 24.10 12.92 37.32 4.20
936 957 3.206348 CTCGAGTACTTGAGCGTCG 57.794 57.895 24.10 9.35 34.62 5.12
1818 3372 1.669999 GGCGGCCGTAGTCCTTCTTA 61.670 60.000 28.70 0.00 0.00 2.10
2496 4062 3.695022 GATGGTGACCGACGACCCG 62.695 68.421 0.00 0.00 0.00 5.28
2517 4083 0.912486 AGGTGGCCTTCTTAAGCGAT 59.088 50.000 3.32 0.00 0.00 4.58
2564 4130 3.815809 TCGAGAAAAGCAGAGGGAAAAA 58.184 40.909 0.00 0.00 0.00 1.94
2569 4135 1.135139 TCGATCGAGAAAAGCAGAGGG 59.865 52.381 15.15 0.00 0.00 4.30
2598 4164 1.864082 CGTATCGCATGCATGGTGTAA 59.136 47.619 27.34 3.21 0.00 2.41
2612 4178 1.266989 TCACTCCATGCTAGCGTATCG 59.733 52.381 9.63 3.20 0.00 2.92
2618 4187 3.161067 TCCTCTATCACTCCATGCTAGC 58.839 50.000 8.10 8.10 28.71 3.42
2621 4190 4.411540 ACAAATCCTCTATCACTCCATGCT 59.588 41.667 0.00 0.00 0.00 3.79
2654 4223 6.127507 GGCTCATCTTTGCTAGGAAAAGAAAT 60.128 38.462 10.83 0.30 44.49 2.17
2668 4237 3.429410 GGGAAAAATCGGGCTCATCTTTG 60.429 47.826 0.00 0.00 0.00 2.77
2678 4247 1.692411 GATCCCTGGGAAAAATCGGG 58.308 55.000 21.42 0.00 34.34 5.14
2696 4265 5.014123 AGGAAACATCTCAATACACCAAGGA 59.986 40.000 0.00 0.00 0.00 3.36
2700 4269 5.473162 CACAAGGAAACATCTCAATACACCA 59.527 40.000 0.00 0.00 0.00 4.17
2718 4287 0.035317 TGACTAGCACTGGCACAAGG 59.965 55.000 0.00 0.00 44.61 3.61
2719 4288 1.270518 ACTGACTAGCACTGGCACAAG 60.271 52.381 0.00 0.00 44.61 3.16
2720 4289 0.758734 ACTGACTAGCACTGGCACAA 59.241 50.000 0.00 0.00 44.61 3.33
2721 4290 0.033920 CACTGACTAGCACTGGCACA 59.966 55.000 0.00 0.00 44.61 4.57
2722 4291 0.318441 TCACTGACTAGCACTGGCAC 59.682 55.000 0.00 0.00 44.61 5.01
2723 4292 0.605083 CTCACTGACTAGCACTGGCA 59.395 55.000 0.00 0.00 44.61 4.92
2724 4293 0.108424 CCTCACTGACTAGCACTGGC 60.108 60.000 0.00 0.00 41.61 4.85
2725 4294 1.550327 TCCTCACTGACTAGCACTGG 58.450 55.000 0.00 0.00 0.00 4.00
2726 4295 4.203226 TCTATCCTCACTGACTAGCACTG 58.797 47.826 0.00 0.00 0.00 3.66
2727 4296 4.511786 TCTATCCTCACTGACTAGCACT 57.488 45.455 0.00 0.00 0.00 4.40
2728 4297 4.824537 TCATCTATCCTCACTGACTAGCAC 59.175 45.833 0.00 0.00 0.00 4.40
2729 4298 5.053978 TCATCTATCCTCACTGACTAGCA 57.946 43.478 0.00 0.00 0.00 3.49
2730 4299 4.458989 CCTCATCTATCCTCACTGACTAGC 59.541 50.000 0.00 0.00 0.00 3.42
2731 4300 5.009631 CCCTCATCTATCCTCACTGACTAG 58.990 50.000 0.00 0.00 0.00 2.57
2743 4315 1.980765 TGCATGTCCCCCTCATCTATC 59.019 52.381 0.00 0.00 0.00 2.08
2744 4316 1.701847 GTGCATGTCCCCCTCATCTAT 59.298 52.381 0.00 0.00 0.00 1.98
2745 4317 1.131638 GTGCATGTCCCCCTCATCTA 58.868 55.000 0.00 0.00 0.00 1.98
2747 4319 1.152881 GGTGCATGTCCCCCTCATC 60.153 63.158 0.00 0.00 0.00 2.92
2749 4321 0.548926 TAAGGTGCATGTCCCCCTCA 60.549 55.000 0.00 0.00 0.00 3.86
2751 4323 0.550147 AGTAAGGTGCATGTCCCCCT 60.550 55.000 0.00 0.00 0.00 4.79
2754 4326 2.092968 TGATCAGTAAGGTGCATGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
2755 4327 3.266510 TGATCAGTAAGGTGCATGTCC 57.733 47.619 0.00 0.00 0.00 4.02
2756 4328 3.064545 GCTTGATCAGTAAGGTGCATGTC 59.935 47.826 0.00 0.00 0.00 3.06
2757 4329 3.012518 GCTTGATCAGTAAGGTGCATGT 58.987 45.455 0.00 0.00 0.00 3.21
2758 4330 3.064958 CAGCTTGATCAGTAAGGTGCATG 59.935 47.826 11.10 0.00 43.79 4.06
2760 4332 2.616256 CCAGCTTGATCAGTAAGGTGCA 60.616 50.000 16.27 0.00 46.69 4.57
2761 4333 2.012673 CCAGCTTGATCAGTAAGGTGC 58.987 52.381 16.27 5.61 46.69 5.01
2837 4414 1.498264 TTGCCATCCCCATCCATTTG 58.502 50.000 0.00 0.00 0.00 2.32
2839 4416 1.008693 ACTTTGCCATCCCCATCCATT 59.991 47.619 0.00 0.00 0.00 3.16
2893 4470 1.533187 ATTGCACCCCCATCCATCTA 58.467 50.000 0.00 0.00 0.00 1.98
2894 4471 0.638292 AATTGCACCCCCATCCATCT 59.362 50.000 0.00 0.00 0.00 2.90
2941 4518 0.749454 CGAAATGGAGCCAAGGAGGG 60.749 60.000 0.00 0.00 38.09 4.30
2960 4537 6.105333 GCCCATGTATGATCATAGAGAGAAC 58.895 44.000 15.83 5.67 0.00 3.01
2994 4571 2.600470 AAAAACCTGGCCCGGCTC 60.600 61.111 14.06 0.00 0.00 4.70
2995 4572 2.917227 CAAAAACCTGGCCCGGCT 60.917 61.111 14.06 0.00 0.00 5.52
2996 4573 4.002506 CCAAAAACCTGGCCCGGC 62.003 66.667 14.06 0.00 0.00 6.13
2997 4574 2.203567 TCCAAAAACCTGGCCCGG 60.204 61.111 12.40 12.40 36.32 5.73
2998 4575 2.570284 GGTCCAAAAACCTGGCCCG 61.570 63.158 0.00 0.00 36.32 6.13
2999 4576 2.570284 CGGTCCAAAAACCTGGCCC 61.570 63.158 0.00 0.00 37.15 5.80
3030 4613 2.163613 GGCTTGTTGTTTAAGGATCGGG 59.836 50.000 0.00 0.00 0.00 5.14
3032 4615 2.817258 TGGGCTTGTTGTTTAAGGATCG 59.183 45.455 0.00 0.00 0.00 3.69
3090 4715 4.540359 TTGGATTGCTTTTCAAGATGGG 57.460 40.909 0.00 0.00 38.22 4.00
3107 4732 2.282887 GGCTTCCGGGCTTTTGGA 60.283 61.111 0.00 0.00 37.53 3.53
3122 4747 2.578664 CTGATTTTTGGGCCGGGC 59.421 61.111 22.00 22.00 0.00 6.13
3201 4826 7.383843 CCTATATACGTATGTGCATGTTCAACA 59.616 37.037 18.37 0.00 0.00 3.33
3202 4827 7.384115 ACCTATATACGTATGTGCATGTTCAAC 59.616 37.037 18.37 0.00 0.00 3.18
3203 4828 7.438564 ACCTATATACGTATGTGCATGTTCAA 58.561 34.615 18.37 0.00 0.00 2.69
3204 4829 6.988522 ACCTATATACGTATGTGCATGTTCA 58.011 36.000 18.37 0.00 0.00 3.18
3205 4830 7.273598 CAGACCTATATACGTATGTGCATGTTC 59.726 40.741 18.37 4.62 0.00 3.18
3206 4831 7.090808 CAGACCTATATACGTATGTGCATGTT 58.909 38.462 18.37 0.00 0.00 2.71
3207 4832 6.350194 CCAGACCTATATACGTATGTGCATGT 60.350 42.308 18.37 7.52 0.00 3.21
3208 4833 6.036470 CCAGACCTATATACGTATGTGCATG 58.964 44.000 18.37 7.89 0.00 4.06
3209 4834 5.127194 CCCAGACCTATATACGTATGTGCAT 59.873 44.000 18.37 6.09 0.00 3.96
3210 4835 4.461431 CCCAGACCTATATACGTATGTGCA 59.539 45.833 18.37 0.00 0.00 4.57
3211 4836 4.461781 ACCCAGACCTATATACGTATGTGC 59.538 45.833 18.37 3.76 0.00 4.57
3212 4837 7.876936 ATACCCAGACCTATATACGTATGTG 57.123 40.000 18.37 7.65 0.00 3.21
3213 4838 7.892241 ACAATACCCAGACCTATATACGTATGT 59.108 37.037 18.37 13.99 0.00 2.29
3214 4839 8.289939 ACAATACCCAGACCTATATACGTATG 57.710 38.462 18.37 3.75 0.00 2.39
3215 4840 9.401058 GTACAATACCCAGACCTATATACGTAT 57.599 37.037 13.54 13.54 0.00 3.06
3216 4841 7.549134 CGTACAATACCCAGACCTATATACGTA 59.451 40.741 0.00 0.00 0.00 3.57
3217 4842 6.372659 CGTACAATACCCAGACCTATATACGT 59.627 42.308 0.00 0.00 0.00 3.57
3218 4843 6.372659 ACGTACAATACCCAGACCTATATACG 59.627 42.308 0.00 0.00 37.23 3.06
3219 4844 7.693969 ACGTACAATACCCAGACCTATATAC 57.306 40.000 0.00 0.00 0.00 1.47
3220 4845 7.309377 GCAACGTACAATACCCAGACCTATATA 60.309 40.741 0.00 0.00 0.00 0.86
3221 4846 6.517864 GCAACGTACAATACCCAGACCTATAT 60.518 42.308 0.00 0.00 0.00 0.86
3222 4847 5.221303 GCAACGTACAATACCCAGACCTATA 60.221 44.000 0.00 0.00 0.00 1.31
3223 4848 4.442472 GCAACGTACAATACCCAGACCTAT 60.442 45.833 0.00 0.00 0.00 2.57
3224 4849 3.119029 GCAACGTACAATACCCAGACCTA 60.119 47.826 0.00 0.00 0.00 3.08
3225 4850 2.354403 GCAACGTACAATACCCAGACCT 60.354 50.000 0.00 0.00 0.00 3.85
3226 4851 2.004733 GCAACGTACAATACCCAGACC 58.995 52.381 0.00 0.00 0.00 3.85
3227 4852 2.414138 GTGCAACGTACAATACCCAGAC 59.586 50.000 0.00 0.00 0.00 3.51
3228 4853 2.613474 GGTGCAACGTACAATACCCAGA 60.613 50.000 0.00 0.00 38.12 3.86
3229 4854 1.735571 GGTGCAACGTACAATACCCAG 59.264 52.381 0.00 0.00 38.12 4.45
3230 4855 1.348366 AGGTGCAACGTACAATACCCA 59.652 47.619 0.00 0.00 38.12 4.51
3231 4856 1.735571 CAGGTGCAACGTACAATACCC 59.264 52.381 0.00 0.00 38.12 3.69
3232 4857 2.419667 ACAGGTGCAACGTACAATACC 58.580 47.619 0.00 0.00 38.12 2.73
3233 4858 3.061697 GCTACAGGTGCAACGTACAATAC 59.938 47.826 0.00 0.00 38.12 1.89
3234 4859 3.255725 GCTACAGGTGCAACGTACAATA 58.744 45.455 0.00 0.00 38.12 1.90
3235 4860 2.073816 GCTACAGGTGCAACGTACAAT 58.926 47.619 0.00 0.00 38.12 2.71
3236 4861 1.504359 GCTACAGGTGCAACGTACAA 58.496 50.000 0.00 0.00 38.12 2.41
3237 4862 0.665068 CGCTACAGGTGCAACGTACA 60.665 55.000 0.00 0.00 38.12 2.90
3238 4863 0.665369 ACGCTACAGGTGCAACGTAC 60.665 55.000 0.00 0.00 38.12 3.67
3239 4864 0.387622 GACGCTACAGGTGCAACGTA 60.388 55.000 0.00 0.94 38.12 3.57
3240 4865 1.663702 GACGCTACAGGTGCAACGT 60.664 57.895 0.00 0.00 38.12 3.99
3241 4866 1.344942 GAGACGCTACAGGTGCAACG 61.345 60.000 0.00 0.00 38.12 4.10
3242 4867 0.038159 AGAGACGCTACAGGTGCAAC 60.038 55.000 0.00 0.00 0.00 4.17
3243 4868 0.243907 GAGAGACGCTACAGGTGCAA 59.756 55.000 0.00 0.00 0.00 4.08
3244 4869 0.609406 AGAGAGACGCTACAGGTGCA 60.609 55.000 0.00 0.00 0.00 4.57
3245 4870 0.528470 AAGAGAGACGCTACAGGTGC 59.472 55.000 0.00 0.00 0.00 5.01
3246 4871 1.133407 GGAAGAGAGACGCTACAGGTG 59.867 57.143 0.00 0.00 0.00 4.00
3247 4872 1.465794 GGAAGAGAGACGCTACAGGT 58.534 55.000 0.00 0.00 0.00 4.00
3248 4873 0.741915 GGGAAGAGAGACGCTACAGG 59.258 60.000 0.00 0.00 0.00 4.00
3249 4874 1.673920 GAGGGAAGAGAGACGCTACAG 59.326 57.143 0.00 0.00 0.00 2.74
3250 4875 1.282447 AGAGGGAAGAGAGACGCTACA 59.718 52.381 0.00 0.00 0.00 2.74
3251 4876 1.673920 CAGAGGGAAGAGAGACGCTAC 59.326 57.143 0.00 0.00 0.00 3.58
3252 4877 1.282447 ACAGAGGGAAGAGAGACGCTA 59.718 52.381 0.00 0.00 0.00 4.26
3253 4878 0.039035 ACAGAGGGAAGAGAGACGCT 59.961 55.000 0.00 0.00 0.00 5.07
3254 4879 1.752683 TACAGAGGGAAGAGAGACGC 58.247 55.000 0.00 0.00 0.00 5.19
3255 4880 3.349022 AGTTACAGAGGGAAGAGAGACG 58.651 50.000 0.00 0.00 0.00 4.18
3256 4881 4.525100 ACAAGTTACAGAGGGAAGAGAGAC 59.475 45.833 0.00 0.00 0.00 3.36
3257 4882 4.742012 ACAAGTTACAGAGGGAAGAGAGA 58.258 43.478 0.00 0.00 0.00 3.10
3258 4883 5.221541 ACAACAAGTTACAGAGGGAAGAGAG 60.222 44.000 0.00 0.00 0.00 3.20
3259 4884 4.654262 ACAACAAGTTACAGAGGGAAGAGA 59.346 41.667 0.00 0.00 0.00 3.10
3260 4885 4.962155 ACAACAAGTTACAGAGGGAAGAG 58.038 43.478 0.00 0.00 0.00 2.85
3261 4886 6.497259 AGATACAACAAGTTACAGAGGGAAGA 59.503 38.462 0.00 0.00 0.00 2.87
3262 4887 6.702329 AGATACAACAAGTTACAGAGGGAAG 58.298 40.000 0.00 0.00 0.00 3.46
3263 4888 6.681729 AGATACAACAAGTTACAGAGGGAA 57.318 37.500 0.00 0.00 0.00 3.97
3264 4889 6.464222 CAAGATACAACAAGTTACAGAGGGA 58.536 40.000 0.00 0.00 0.00 4.20
3265 4890 5.643777 CCAAGATACAACAAGTTACAGAGGG 59.356 44.000 0.00 0.00 0.00 4.30
3266 4891 5.643777 CCCAAGATACAACAAGTTACAGAGG 59.356 44.000 0.00 0.00 0.00 3.69
3267 4892 6.464222 TCCCAAGATACAACAAGTTACAGAG 58.536 40.000 0.00 0.00 0.00 3.35
3268 4893 6.269077 TCTCCCAAGATACAACAAGTTACAGA 59.731 38.462 0.00 0.00 0.00 3.41
3269 4894 6.369065 GTCTCCCAAGATACAACAAGTTACAG 59.631 42.308 0.00 0.00 33.08 2.74
3270 4895 6.183361 TGTCTCCCAAGATACAACAAGTTACA 60.183 38.462 0.00 0.00 33.08 2.41
3271 4896 6.228258 TGTCTCCCAAGATACAACAAGTTAC 58.772 40.000 0.00 0.00 33.08 2.50
3272 4897 6.428083 TGTCTCCCAAGATACAACAAGTTA 57.572 37.500 0.00 0.00 33.08 2.24
3273 4898 5.304686 TGTCTCCCAAGATACAACAAGTT 57.695 39.130 0.00 0.00 33.08 2.66
3274 4899 4.974645 TGTCTCCCAAGATACAACAAGT 57.025 40.909 0.00 0.00 33.08 3.16
3286 4911 1.416401 GTCTGGTGTCTTGTCTCCCAA 59.584 52.381 0.00 0.00 0.00 4.12
3287 4912 1.048601 GTCTGGTGTCTTGTCTCCCA 58.951 55.000 0.00 0.00 0.00 4.37
3288 4913 0.038159 CGTCTGGTGTCTTGTCTCCC 60.038 60.000 0.00 0.00 0.00 4.30
3289 4914 0.959553 TCGTCTGGTGTCTTGTCTCC 59.040 55.000 0.00 0.00 0.00 3.71
3290 4915 2.395654 GTTCGTCTGGTGTCTTGTCTC 58.604 52.381 0.00 0.00 0.00 3.36
3291 4916 1.068741 GGTTCGTCTGGTGTCTTGTCT 59.931 52.381 0.00 0.00 0.00 3.41
3292 4917 1.499049 GGTTCGTCTGGTGTCTTGTC 58.501 55.000 0.00 0.00 0.00 3.18
3293 4918 0.106149 GGGTTCGTCTGGTGTCTTGT 59.894 55.000 0.00 0.00 0.00 3.16
3294 4919 0.602905 GGGGTTCGTCTGGTGTCTTG 60.603 60.000 0.00 0.00 0.00 3.02
3295 4920 0.763223 AGGGGTTCGTCTGGTGTCTT 60.763 55.000 0.00 0.00 0.00 3.01
3296 4921 0.763223 AAGGGGTTCGTCTGGTGTCT 60.763 55.000 0.00 0.00 0.00 3.41
3297 4922 0.602905 CAAGGGGTTCGTCTGGTGTC 60.603 60.000 0.00 0.00 0.00 3.67
3298 4923 1.342672 ACAAGGGGTTCGTCTGGTGT 61.343 55.000 0.00 0.00 0.00 4.16
3299 4924 0.682852 TACAAGGGGTTCGTCTGGTG 59.317 55.000 0.00 0.00 0.00 4.17
3300 4925 1.553704 GATACAAGGGGTTCGTCTGGT 59.446 52.381 0.00 0.00 0.00 4.00
3301 4926 1.831736 AGATACAAGGGGTTCGTCTGG 59.168 52.381 0.00 0.00 0.00 3.86
3302 4927 4.939052 ATAGATACAAGGGGTTCGTCTG 57.061 45.455 0.00 0.00 0.00 3.51
3303 4928 7.894364 ACATATATAGATACAAGGGGTTCGTCT 59.106 37.037 0.00 0.00 0.00 4.18
3304 4929 7.974501 CACATATATAGATACAAGGGGTTCGTC 59.025 40.741 0.00 0.00 0.00 4.20
3305 4930 7.578955 GCACATATATAGATACAAGGGGTTCGT 60.579 40.741 0.00 0.00 0.00 3.85
3306 4931 6.757010 GCACATATATAGATACAAGGGGTTCG 59.243 42.308 0.00 0.00 0.00 3.95
3307 4932 7.048512 GGCACATATATAGATACAAGGGGTTC 58.951 42.308 0.00 0.00 0.00 3.62
3308 4933 6.735704 AGGCACATATATAGATACAAGGGGTT 59.264 38.462 0.00 0.00 0.00 4.11
3309 4934 6.272320 AGGCACATATATAGATACAAGGGGT 58.728 40.000 0.00 0.00 0.00 4.95
3310 4935 6.814954 AGGCACATATATAGATACAAGGGG 57.185 41.667 0.00 0.00 0.00 4.79
3311 4936 8.417106 CACTAGGCACATATATAGATACAAGGG 58.583 40.741 0.00 0.00 0.00 3.95
3312 4937 7.923344 GCACTAGGCACATATATAGATACAAGG 59.077 40.741 0.00 0.00 43.97 3.61
3313 4938 8.864069 GCACTAGGCACATATATAGATACAAG 57.136 38.462 0.00 0.00 43.97 3.16
3330 4955 1.863454 CTCATTGATCGTGCACTAGGC 59.137 52.381 16.19 1.16 45.13 3.93
3331 4956 3.443099 TCTCATTGATCGTGCACTAGG 57.557 47.619 16.19 0.00 0.00 3.02
3332 4957 5.980698 AATTCTCATTGATCGTGCACTAG 57.019 39.130 16.19 0.00 0.00 2.57
3333 4958 6.363357 CGATAATTCTCATTGATCGTGCACTA 59.637 38.462 16.19 3.92 35.75 2.74
3334 4959 5.176406 CGATAATTCTCATTGATCGTGCACT 59.824 40.000 16.19 0.00 35.75 4.40
3335 4960 5.175673 TCGATAATTCTCATTGATCGTGCAC 59.824 40.000 6.82 6.82 40.16 4.57
3336 4961 5.288804 TCGATAATTCTCATTGATCGTGCA 58.711 37.500 4.87 0.00 40.16 4.57
3337 4962 5.829233 TCGATAATTCTCATTGATCGTGC 57.171 39.130 4.87 0.00 40.16 5.34
3338 4963 6.128742 TGCATCGATAATTCTCATTGATCGTG 60.129 38.462 0.00 4.54 40.16 4.35
3339 4964 5.928264 TGCATCGATAATTCTCATTGATCGT 59.072 36.000 0.00 0.00 40.16 3.73
3340 4965 6.128742 TGTGCATCGATAATTCTCATTGATCG 60.129 38.462 0.00 0.00 40.51 3.69
3341 4966 7.014115 GTGTGCATCGATAATTCTCATTGATC 58.986 38.462 0.00 0.00 0.00 2.92
3342 4967 6.484308 TGTGTGCATCGATAATTCTCATTGAT 59.516 34.615 0.00 0.00 0.00 2.57
3343 4968 5.816777 TGTGTGCATCGATAATTCTCATTGA 59.183 36.000 0.00 0.00 0.00 2.57
3344 4969 6.051646 TGTGTGCATCGATAATTCTCATTG 57.948 37.500 0.00 0.00 0.00 2.82
3345 4970 6.682423 TTGTGTGCATCGATAATTCTCATT 57.318 33.333 0.00 0.00 0.00 2.57
3346 4971 6.072838 GGATTGTGTGCATCGATAATTCTCAT 60.073 38.462 0.00 0.00 0.00 2.90
3347 4972 5.237127 GGATTGTGTGCATCGATAATTCTCA 59.763 40.000 0.00 0.00 0.00 3.27
3348 4973 5.334414 GGGATTGTGTGCATCGATAATTCTC 60.334 44.000 0.00 0.00 0.00 2.87
3349 4974 4.516698 GGGATTGTGTGCATCGATAATTCT 59.483 41.667 0.00 0.00 0.00 2.40
3350 4975 4.516698 AGGGATTGTGTGCATCGATAATTC 59.483 41.667 0.00 0.00 0.00 2.17
3351 4976 4.464008 AGGGATTGTGTGCATCGATAATT 58.536 39.130 0.00 0.00 0.00 1.40
3352 4977 4.090761 AGGGATTGTGTGCATCGATAAT 57.909 40.909 0.00 0.00 0.00 1.28
3353 4978 3.558931 AGGGATTGTGTGCATCGATAA 57.441 42.857 0.00 0.00 0.00 1.75
3354 4979 3.558931 AAGGGATTGTGTGCATCGATA 57.441 42.857 0.00 0.00 0.00 2.92
3355 4980 2.425143 AAGGGATTGTGTGCATCGAT 57.575 45.000 0.00 0.00 0.00 3.59
3356 4981 2.083774 GAAAGGGATTGTGTGCATCGA 58.916 47.619 0.00 0.00 0.00 3.59
3357 4982 2.086869 AGAAAGGGATTGTGTGCATCG 58.913 47.619 0.00 0.00 0.00 3.84
3358 4983 2.424956 GGAGAAAGGGATTGTGTGCATC 59.575 50.000 0.00 0.00 0.00 3.91
3359 4984 2.450476 GGAGAAAGGGATTGTGTGCAT 58.550 47.619 0.00 0.00 0.00 3.96
3360 4985 1.547675 GGGAGAAAGGGATTGTGTGCA 60.548 52.381 0.00 0.00 0.00 4.57
3361 4986 1.177401 GGGAGAAAGGGATTGTGTGC 58.823 55.000 0.00 0.00 0.00 4.57
3362 4987 2.584835 TGGGAGAAAGGGATTGTGTG 57.415 50.000 0.00 0.00 0.00 3.82
3363 4988 3.611025 TTTGGGAGAAAGGGATTGTGT 57.389 42.857 0.00 0.00 0.00 3.72
3364 4989 5.488262 AAATTTGGGAGAAAGGGATTGTG 57.512 39.130 0.00 0.00 0.00 3.33
3365 4990 8.927411 CATATAAATTTGGGAGAAAGGGATTGT 58.073 33.333 0.00 0.00 0.00 2.71
3366 4991 8.370182 CCATATAAATTTGGGAGAAAGGGATTG 58.630 37.037 0.00 0.00 0.00 2.67
3367 4992 8.073735 ACCATATAAATTTGGGAGAAAGGGATT 58.926 33.333 0.00 0.00 37.32 3.01
3368 4993 7.604722 ACCATATAAATTTGGGAGAAAGGGAT 58.395 34.615 0.00 0.00 37.32 3.85
3369 4994 6.992235 ACCATATAAATTTGGGAGAAAGGGA 58.008 36.000 0.00 0.00 37.32 4.20
3370 4995 8.956446 ATACCATATAAATTTGGGAGAAAGGG 57.044 34.615 0.00 0.00 37.32 3.95
3371 4996 9.586732 TGATACCATATAAATTTGGGAGAAAGG 57.413 33.333 0.00 0.00 37.32 3.11
3392 5017 6.531948 GCAAGGATCAATACGGTATCTGATAC 59.468 42.308 17.52 17.52 35.00 2.24
3393 5018 6.351033 GGCAAGGATCAATACGGTATCTGATA 60.351 42.308 17.74 0.00 0.00 2.15
3394 5019 5.482908 GCAAGGATCAATACGGTATCTGAT 58.517 41.667 17.75 17.75 0.00 2.90
3395 5020 4.262463 GGCAAGGATCAATACGGTATCTGA 60.262 45.833 0.30 7.99 0.00 3.27
3396 5021 3.997021 GGCAAGGATCAATACGGTATCTG 59.003 47.826 0.30 3.13 0.00 2.90
3397 5022 3.904339 AGGCAAGGATCAATACGGTATCT 59.096 43.478 0.30 0.00 0.00 1.98
3398 5023 4.273148 AGGCAAGGATCAATACGGTATC 57.727 45.455 0.30 0.00 0.00 2.24
3399 5024 5.818678 TTAGGCAAGGATCAATACGGTAT 57.181 39.130 0.00 0.00 0.00 2.73
3400 5025 5.362263 GTTTAGGCAAGGATCAATACGGTA 58.638 41.667 0.00 0.00 0.00 4.02
3401 5026 4.196971 GTTTAGGCAAGGATCAATACGGT 58.803 43.478 0.00 0.00 0.00 4.83
3402 5027 3.564225 GGTTTAGGCAAGGATCAATACGG 59.436 47.826 0.00 0.00 0.00 4.02
3403 5028 3.247648 CGGTTTAGGCAAGGATCAATACG 59.752 47.826 0.00 0.00 0.00 3.06
3404 5029 3.003378 GCGGTTTAGGCAAGGATCAATAC 59.997 47.826 0.00 0.00 0.00 1.89
3405 5030 3.118038 AGCGGTTTAGGCAAGGATCAATA 60.118 43.478 0.00 0.00 0.00 1.90
3406 5031 2.024414 GCGGTTTAGGCAAGGATCAAT 58.976 47.619 0.00 0.00 0.00 2.57
3407 5032 1.004277 AGCGGTTTAGGCAAGGATCAA 59.996 47.619 0.00 0.00 0.00 2.57
3408 5033 0.618458 AGCGGTTTAGGCAAGGATCA 59.382 50.000 0.00 0.00 0.00 2.92
3409 5034 1.671328 GAAGCGGTTTAGGCAAGGATC 59.329 52.381 0.00 0.00 0.00 3.36
3410 5035 1.682087 GGAAGCGGTTTAGGCAAGGAT 60.682 52.381 0.00 0.00 0.00 3.24
3411 5036 0.322187 GGAAGCGGTTTAGGCAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
3412 5037 1.644786 CGGAAGCGGTTTAGGCAAGG 61.645 60.000 0.00 0.00 0.00 3.61
3413 5038 1.794222 CGGAAGCGGTTTAGGCAAG 59.206 57.895 0.00 0.00 0.00 4.01
3414 5039 3.975246 CGGAAGCGGTTTAGGCAA 58.025 55.556 0.00 0.00 0.00 4.52
3426 5051 2.511600 CGGCTAGGGTTGCGGAAG 60.512 66.667 0.00 0.00 33.45 3.46
3427 5052 4.770874 GCGGCTAGGGTTGCGGAA 62.771 66.667 0.00 0.00 33.45 4.30
3481 5106 4.847444 GAGGGAAGGAGCAGCGGC 62.847 72.222 0.00 0.00 41.61 6.53
3482 5107 4.521062 CGAGGGAAGGAGCAGCGG 62.521 72.222 0.00 0.00 0.00 5.52
3484 5109 4.087892 TGCGAGGGAAGGAGCAGC 62.088 66.667 0.00 0.00 34.39 5.25
3488 5113 4.521062 CGGCTGCGAGGGAAGGAG 62.521 72.222 0.00 0.00 0.00 3.69
3506 5131 3.491598 AACGGCTGTTGGGGTGGAG 62.492 63.158 10.90 0.00 36.81 3.86
3507 5132 3.494254 AACGGCTGTTGGGGTGGA 61.494 61.111 10.90 0.00 36.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.