Multiple sequence alignment - TraesCS5B01G407600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G407600 chr5B 100.000 6597 0 0 780 7376 583294357 583300953 0.000000e+00 12183.0
1 TraesCS5B01G407600 chr5B 100.000 510 0 0 1 510 583293578 583294087 0.000000e+00 942.0
2 TraesCS5B01G407600 chr5D 87.308 2348 147 53 3766 5992 475900231 475902548 0.000000e+00 2545.0
3 TraesCS5B01G407600 chr5D 92.570 1790 70 25 789 2559 475897290 475899035 0.000000e+00 2510.0
4 TraesCS5B01G407600 chr5D 87.519 1306 124 22 6047 7327 475902569 475903860 0.000000e+00 1472.0
5 TraesCS5B01G407600 chr5D 90.205 684 54 12 3094 3773 475899536 475900210 0.000000e+00 880.0
6 TraesCS5B01G407600 chr5D 92.025 489 32 6 2536 3022 475899051 475899534 0.000000e+00 680.0
7 TraesCS5B01G407600 chr5D 90.595 521 26 13 3 505 475896665 475897180 0.000000e+00 669.0
8 TraesCS5B01G407600 chr5D 81.116 233 22 13 3766 3983 509436819 509437044 4.580000e-37 167.0
9 TraesCS5B01G407600 chr5D 86.131 137 14 4 7232 7366 475903853 475903986 7.710000e-30 143.0
10 TraesCS5B01G407600 chr5D 75.338 296 47 16 5165 5440 360131845 360131556 1.300000e-22 119.0
11 TraesCS5B01G407600 chr5D 81.818 77 8 3 4051 4121 417734539 417734615 7.990000e-05 60.2
12 TraesCS5B01G407600 chr5D 100.000 32 0 0 4046 4077 528624395 528624426 7.990000e-05 60.2
13 TraesCS5B01G407600 chr5A 86.746 2256 146 61 3092 5229 595395613 595397833 0.000000e+00 2368.0
14 TraesCS5B01G407600 chr5A 90.092 1857 86 31 780 2562 595393243 595395075 0.000000e+00 2320.0
15 TraesCS5B01G407600 chr5A 86.078 1178 84 33 5266 6406 595397821 595398955 0.000000e+00 1194.0
16 TraesCS5B01G407600 chr5A 86.703 737 50 20 6388 7093 595398979 595399698 0.000000e+00 774.0
17 TraesCS5B01G407600 chr5A 85.151 431 51 10 6956 7376 595399689 595400116 5.290000e-116 429.0
18 TraesCS5B01G407600 chr5A 84.091 440 39 16 2533 2949 595395082 595395513 5.360000e-106 396.0
19 TraesCS5B01G407600 chr5A 89.270 233 18 6 127 356 595392742 595392970 1.210000e-72 285.0
20 TraesCS5B01G407600 chr5A 98.958 96 1 0 351 446 595392995 595393090 9.840000e-39 172.0
21 TraesCS5B01G407600 chr2A 80.095 211 30 9 3780 3979 642219181 642218972 5.960000e-31 147.0
22 TraesCS5B01G407600 chr2A 81.707 82 9 2 4046 4121 20644349 20644268 6.180000e-06 63.9
23 TraesCS5B01G407600 chr2A 81.707 82 9 4 4045 4121 221203061 221203141 6.180000e-06 63.9
24 TraesCS5B01G407600 chr4D 93.671 79 4 1 3020 3097 21876059 21876137 4.680000e-22 117.0
25 TraesCS5B01G407600 chr3D 93.671 79 4 1 3018 3095 169888217 169888139 4.680000e-22 117.0
26 TraesCS5B01G407600 chr6D 93.506 77 3 2 3019 3095 368365284 368365358 6.050000e-21 113.0
27 TraesCS5B01G407600 chr6D 91.139 79 7 0 3020 3098 370795145 370795223 2.810000e-19 108.0
28 TraesCS5B01G407600 chr6D 81.928 83 8 5 4046 4121 80600202 80600120 6.180000e-06 63.9
29 TraesCS5B01G407600 chr6D 100.000 28 0 0 4050 4077 4553636 4553663 1.300000e-02 52.8
30 TraesCS5B01G407600 chr6B 93.506 77 3 2 3019 3095 553057203 553057129 6.050000e-21 113.0
31 TraesCS5B01G407600 chr6B 100.000 29 0 0 3787 3815 183356675 183356703 4.000000e-03 54.7
32 TraesCS5B01G407600 chr6A 93.506 77 3 2 3019 3095 509279057 509279131 6.050000e-21 113.0
33 TraesCS5B01G407600 chr4A 91.463 82 4 3 3020 3098 88424488 88424569 7.820000e-20 110.0
34 TraesCS5B01G407600 chr1D 90.361 83 8 0 3020 3102 440410440 440410522 7.820000e-20 110.0
35 TraesCS5B01G407600 chr2D 88.636 88 8 2 3019 3104 635845316 635845403 1.010000e-18 106.0
36 TraesCS5B01G407600 chr3A 81.707 82 10 1 4046 4122 406173249 406173168 6.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G407600 chr5B 583293578 583300953 7375 False 6562.500000 12183 100.000000 1 7376 2 chr5B.!!$F1 7375
1 TraesCS5B01G407600 chr5D 475896665 475903986 7321 False 1271.285714 2545 89.479000 3 7366 7 chr5D.!!$F4 7363
2 TraesCS5B01G407600 chr5A 595392742 595400116 7374 False 992.250000 2368 88.386125 127 7376 8 chr5A.!!$F1 7249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 929 0.031111 AACTCCCCCTCGATCCATGA 60.031 55.0 0.00 0.00 0.00 3.07 F
2183 2325 0.106708 CGGTCGATGGATGGATGGTT 59.893 55.0 0.00 0.00 0.00 3.67 F
2795 2995 0.109913 TCTTAGATCGGCGGGCTAGA 59.890 55.0 7.21 1.21 0.00 2.43 F
3324 3583 0.392998 ATGACATCAGGACAACGGCC 60.393 55.0 0.00 0.00 0.00 6.13 F
4695 5080 0.401105 ATCCACCCCTCTCCTCCATG 60.401 60.0 0.00 0.00 0.00 3.66 F
5169 5577 0.038599 ATGACTTCAGCATGCACCCA 59.961 50.0 21.98 8.90 34.76 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 2370 0.035056 CCACCACCACATCCTCTTCC 60.035 60.000 0.0 0.0 0.00 3.46 R
3083 3325 1.068741 GGCTAACATGTACTCCCTCCG 59.931 57.143 0.0 0.0 0.00 4.63 R
4695 5080 0.820871 ACCAGAGAAGCTGTCGATCC 59.179 55.000 0.0 0.0 43.33 3.36 R
4877 5268 0.304705 AACGCAAGCTGACTTCAACG 59.695 50.000 0.0 0.0 45.62 4.10 R
6052 6493 0.320771 AGCCAAGACGTTCGCATTCT 60.321 50.000 0.0 0.0 0.00 2.40 R
6728 7241 0.391130 TCGTCCGGCTTCCATTCTTG 60.391 55.000 0.0 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.600908 TTACTTGTAAACGATGCCACTTC 57.399 39.130 0.00 0.00 0.00 3.01
141 143 3.456380 AAGGCCATGAAAGTGTACCAT 57.544 42.857 5.01 0.00 0.00 3.55
158 160 3.728845 ACCATCGTACATATGAACTGGC 58.271 45.455 10.38 0.00 28.76 4.85
163 165 4.212716 TCGTACATATGAACTGGCTAGGT 58.787 43.478 10.38 0.00 0.00 3.08
167 169 6.315393 CGTACATATGAACTGGCTAGGTTTTT 59.685 38.462 10.38 0.00 0.00 1.94
168 170 6.515272 ACATATGAACTGGCTAGGTTTTTG 57.485 37.500 10.38 0.00 0.00 2.44
170 172 6.719370 ACATATGAACTGGCTAGGTTTTTGAA 59.281 34.615 10.38 0.00 0.00 2.69
173 176 4.578928 TGAACTGGCTAGGTTTTTGAAGTC 59.421 41.667 0.85 0.00 0.00 3.01
201 204 2.276201 TGACCGCATTCGAAATACCAG 58.724 47.619 0.00 0.00 38.10 4.00
202 205 2.277084 GACCGCATTCGAAATACCAGT 58.723 47.619 0.00 0.00 38.10 4.00
203 206 3.119065 TGACCGCATTCGAAATACCAGTA 60.119 43.478 0.00 0.00 38.10 2.74
205 208 5.204409 ACCGCATTCGAAATACCAGTATA 57.796 39.130 0.00 0.00 38.10 1.47
209 212 6.307318 CCGCATTCGAAATACCAGTATAGTAC 59.693 42.308 0.00 0.00 38.10 2.73
239 245 2.602217 CGTTTACTTGTCAGCTTGCACC 60.602 50.000 0.00 0.00 0.00 5.01
244 250 1.677576 CTTGTCAGCTTGCACCTGAAA 59.322 47.619 15.65 9.49 40.69 2.69
297 303 3.751698 GCCTTCAAAGTACCAGTACCTTG 59.248 47.826 11.44 11.44 38.30 3.61
346 352 0.901580 CACGTACCCCTACACACCCT 60.902 60.000 0.00 0.00 0.00 4.34
347 353 0.613012 ACGTACCCCTACACACCCTC 60.613 60.000 0.00 0.00 0.00 4.30
348 354 1.660560 CGTACCCCTACACACCCTCG 61.661 65.000 0.00 0.00 0.00 4.63
349 355 1.000739 TACCCCTACACACCCTCGG 59.999 63.158 0.00 0.00 0.00 4.63
427 463 1.355720 CACCACATCTTTTCCCTCCCT 59.644 52.381 0.00 0.00 0.00 4.20
479 515 0.967887 GCTCCAAAGCCCCTCCTTTC 60.968 60.000 0.00 0.00 43.10 2.62
505 549 1.961277 CTTGTCACTCACCCGCACC 60.961 63.158 0.00 0.00 0.00 5.01
506 550 3.800685 TTGTCACTCACCCGCACCG 62.801 63.158 0.00 0.00 0.00 4.94
811 855 3.076785 TCTCTCTCCTCACCTCCTTTTCT 59.923 47.826 0.00 0.00 0.00 2.52
813 857 2.499693 CTCTCCTCACCTCCTTTTCTCC 59.500 54.545 0.00 0.00 0.00 3.71
848 901 0.394488 TCTTCCTCGATCGCCTCTGT 60.394 55.000 11.09 0.00 0.00 3.41
876 929 0.031111 AACTCCCCCTCGATCCATGA 60.031 55.000 0.00 0.00 0.00 3.07
879 932 1.766059 CCCCCTCGATCCATGACCA 60.766 63.158 0.00 0.00 0.00 4.02
928 982 5.385509 TCACACGATCACTTGTGATCTAA 57.614 39.130 29.42 14.66 45.62 2.10
988 1048 3.876274 TCATTGAGCTGTAGTCTGGTC 57.124 47.619 0.00 0.00 39.37 4.02
999 1059 0.396435 AGTCTGGTCCGACATTGCAA 59.604 50.000 0.00 0.00 36.38 4.08
1109 1169 1.617947 GGGAAGCCACTGAGGTCGAT 61.618 60.000 0.00 0.00 40.61 3.59
1442 1502 3.406361 CCTCACTCACGTGCGCAC 61.406 66.667 30.42 30.42 40.99 5.34
1490 1550 3.306472 TTTGCCTAAGTTGACCAAGGT 57.694 42.857 0.00 0.00 0.00 3.50
1498 1558 3.577805 AGTTGACCAAGGTGTTAAGCT 57.422 42.857 0.00 0.00 34.99 3.74
1771 1842 3.853475 CATGATGGCCTCCTTTTGTTTC 58.147 45.455 3.32 0.00 0.00 2.78
1847 1921 0.179029 ACTTTGTCCCCGGTCAAGTG 60.179 55.000 0.00 3.37 0.00 3.16
1848 1922 1.515521 CTTTGTCCCCGGTCAAGTGC 61.516 60.000 0.00 0.00 0.00 4.40
1849 1923 2.272230 TTTGTCCCCGGTCAAGTGCA 62.272 55.000 0.00 0.00 0.00 4.57
1850 1924 2.063015 TTGTCCCCGGTCAAGTGCAT 62.063 55.000 0.00 0.00 0.00 3.96
1851 1925 2.040544 GTCCCCGGTCAAGTGCATG 61.041 63.158 0.00 0.00 0.00 4.06
1937 2019 7.989416 AATTTCACCATCTTCATTTTGCATT 57.011 28.000 0.00 0.00 0.00 3.56
1969 2062 5.941948 ACACACTAACAAATTAGCACCTC 57.058 39.130 0.00 0.00 41.48 3.85
2045 2162 0.394938 ATCGCCACAGGTACACACAA 59.605 50.000 0.00 0.00 0.00 3.33
2066 2183 3.677156 ATGCAGCTTTAATCTTCCCCT 57.323 42.857 0.00 0.00 0.00 4.79
2112 2229 0.888619 CAAGGCAGGTAGAGACACGA 59.111 55.000 0.00 0.00 0.00 4.35
2113 2230 1.478510 CAAGGCAGGTAGAGACACGAT 59.521 52.381 0.00 0.00 0.00 3.73
2114 2231 1.107114 AGGCAGGTAGAGACACGATG 58.893 55.000 0.00 0.00 0.00 3.84
2136 2254 1.641123 CGCGGCCGTCCTGTTAATTT 61.641 55.000 28.70 0.00 0.00 1.82
2164 2306 1.207089 TGGAATGAGTGACCGGTGATC 59.793 52.381 14.63 7.68 0.00 2.92
2165 2307 1.560923 GAATGAGTGACCGGTGATCG 58.439 55.000 14.63 0.00 38.88 3.69
2174 2316 3.116463 CGGTGATCGGTCGATGGA 58.884 61.111 10.77 0.00 34.60 3.41
2175 2317 1.660355 CGGTGATCGGTCGATGGAT 59.340 57.895 10.77 1.30 34.60 3.41
2176 2318 0.664466 CGGTGATCGGTCGATGGATG 60.664 60.000 10.77 0.00 34.60 3.51
2177 2319 0.319900 GGTGATCGGTCGATGGATGG 60.320 60.000 10.77 0.00 34.60 3.51
2178 2320 0.673985 GTGATCGGTCGATGGATGGA 59.326 55.000 10.77 0.00 34.60 3.41
2179 2321 1.273606 GTGATCGGTCGATGGATGGAT 59.726 52.381 10.77 0.00 34.60 3.41
2180 2322 1.273327 TGATCGGTCGATGGATGGATG 59.727 52.381 10.77 0.00 34.60 3.51
2181 2323 0.610174 ATCGGTCGATGGATGGATGG 59.390 55.000 4.97 0.00 32.98 3.51
2182 2324 0.759060 TCGGTCGATGGATGGATGGT 60.759 55.000 0.00 0.00 0.00 3.55
2183 2325 0.106708 CGGTCGATGGATGGATGGTT 59.893 55.000 0.00 0.00 0.00 3.67
2184 2326 1.475034 CGGTCGATGGATGGATGGTTT 60.475 52.381 0.00 0.00 0.00 3.27
2225 2370 2.997315 TGGTGGACGCAGGAGGAG 60.997 66.667 0.00 0.00 0.00 3.69
2226 2371 3.775654 GGTGGACGCAGGAGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
2227 2372 2.680352 GTGGACGCAGGAGGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
2242 2387 1.280457 GAGGAAGAGGATGTGGTGGT 58.720 55.000 0.00 0.00 0.00 4.16
2519 2665 6.575162 AATCTGTTCCGTTTGCTTTTATCT 57.425 33.333 0.00 0.00 0.00 1.98
2614 2806 9.455847 GCAAGTAAATGATTAAGCTTAAGGATG 57.544 33.333 22.55 12.10 0.00 3.51
2626 2818 7.440523 AAGCTTAAGGATGTCAAGTTAACAG 57.559 36.000 8.61 0.00 0.00 3.16
2628 2820 6.998673 AGCTTAAGGATGTCAAGTTAACAGTT 59.001 34.615 8.61 0.00 0.00 3.16
2637 2829 5.929415 TGTCAAGTTAACAGTTATCGATGCA 59.071 36.000 8.54 0.00 0.00 3.96
2642 2834 7.377766 AGTTAACAGTTATCGATGCATTTGT 57.622 32.000 8.54 2.84 0.00 2.83
2649 2841 5.525378 AGTTATCGATGCATTTGTCTTCCTC 59.475 40.000 8.54 0.00 0.00 3.71
2650 2842 2.632377 TCGATGCATTTGTCTTCCTCC 58.368 47.619 0.00 0.00 0.00 4.30
2795 2995 0.109913 TCTTAGATCGGCGGGCTAGA 59.890 55.000 7.21 1.21 0.00 2.43
2796 2996 0.959553 CTTAGATCGGCGGGCTAGAA 59.040 55.000 7.21 0.00 0.00 2.10
2797 2997 1.340248 CTTAGATCGGCGGGCTAGAAA 59.660 52.381 7.21 0.00 0.00 2.52
2799 2999 1.629043 AGATCGGCGGGCTAGAAATA 58.371 50.000 7.21 0.00 0.00 1.40
2800 3000 2.180276 AGATCGGCGGGCTAGAAATAT 58.820 47.619 7.21 0.00 0.00 1.28
2801 3001 3.362706 AGATCGGCGGGCTAGAAATATA 58.637 45.455 7.21 0.00 0.00 0.86
2850 3057 7.007723 ACTTACAATGGGAAAAGGACAACATA 58.992 34.615 0.00 0.00 0.00 2.29
2851 3058 7.673926 ACTTACAATGGGAAAAGGACAACATAT 59.326 33.333 0.00 0.00 0.00 1.78
2854 3061 4.046286 TGGGAAAAGGACAACATATGCT 57.954 40.909 1.58 0.00 0.00 3.79
2865 3072 5.002464 ACAACATATGCTTGAAATCTGCC 57.998 39.130 18.72 0.00 0.00 4.85
2924 3132 9.364989 GCAGCCATAAAAACACTAATTTTATCA 57.635 29.630 2.24 0.00 39.63 2.15
2974 3216 6.296026 AGAGTTCACCAAGTGTATTAGCAAA 58.704 36.000 0.00 0.00 34.79 3.68
2975 3217 6.770785 AGAGTTCACCAAGTGTATTAGCAAAA 59.229 34.615 0.00 0.00 34.79 2.44
3021 3263 8.974060 TGGAACTAATGACCTTATTTCCATAC 57.026 34.615 14.36 0.00 46.30 2.39
3022 3264 8.778059 TGGAACTAATGACCTTATTTCCATACT 58.222 33.333 14.36 0.00 46.30 2.12
3023 3265 9.274206 GGAACTAATGACCTTATTTCCATACTC 57.726 37.037 12.04 0.00 43.58 2.59
3024 3266 9.274206 GAACTAATGACCTTATTTCCATACTCC 57.726 37.037 0.00 0.00 0.00 3.85
3025 3267 7.746703 ACTAATGACCTTATTTCCATACTCCC 58.253 38.462 0.00 0.00 0.00 4.30
3026 3268 6.848562 AATGACCTTATTTCCATACTCCCT 57.151 37.500 0.00 0.00 0.00 4.20
3027 3269 5.888982 TGACCTTATTTCCATACTCCCTC 57.111 43.478 0.00 0.00 0.00 4.30
3028 3270 5.538877 TGACCTTATTTCCATACTCCCTCT 58.461 41.667 0.00 0.00 0.00 3.69
3029 3271 5.366768 TGACCTTATTTCCATACTCCCTCTG 59.633 44.000 0.00 0.00 0.00 3.35
3030 3272 5.289510 ACCTTATTTCCATACTCCCTCTGT 58.710 41.667 0.00 0.00 0.00 3.41
3031 3273 6.449956 ACCTTATTTCCATACTCCCTCTGTA 58.550 40.000 0.00 0.00 0.00 2.74
3032 3274 6.906901 ACCTTATTTCCATACTCCCTCTGTAA 59.093 38.462 0.00 0.00 0.00 2.41
3033 3275 7.404980 ACCTTATTTCCATACTCCCTCTGTAAA 59.595 37.037 0.00 0.00 0.00 2.01
3034 3276 7.934120 CCTTATTTCCATACTCCCTCTGTAAAG 59.066 40.741 0.00 0.00 0.00 1.85
3035 3277 8.618240 TTATTTCCATACTCCCTCTGTAAAGA 57.382 34.615 0.00 0.00 0.00 2.52
3036 3278 6.945636 TTTCCATACTCCCTCTGTAAAGAA 57.054 37.500 0.00 0.00 0.00 2.52
3037 3279 6.945636 TTCCATACTCCCTCTGTAAAGAAA 57.054 37.500 0.00 0.00 0.00 2.52
3038 3280 7.510675 TTCCATACTCCCTCTGTAAAGAAAT 57.489 36.000 0.00 0.00 0.00 2.17
3039 3281 8.618240 TTCCATACTCCCTCTGTAAAGAAATA 57.382 34.615 0.00 0.00 0.00 1.40
3040 3282 8.798975 TCCATACTCCCTCTGTAAAGAAATAT 57.201 34.615 0.00 0.00 0.00 1.28
3041 3283 9.892444 TCCATACTCCCTCTGTAAAGAAATATA 57.108 33.333 0.00 0.00 0.00 0.86
3046 3288 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3047 3289 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3048 3290 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
3049 3291 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
3065 3307 7.964604 AAGAGTGTTTAGATCACTACCAAAC 57.035 36.000 0.00 0.00 44.68 2.93
3066 3308 6.157211 AGAGTGTTTAGATCACTACCAAACG 58.843 40.000 0.00 0.00 44.68 3.60
3067 3309 4.689345 AGTGTTTAGATCACTACCAAACGC 59.311 41.667 0.00 0.00 43.17 4.84
3068 3310 4.689345 GTGTTTAGATCACTACCAAACGCT 59.311 41.667 0.00 0.00 30.86 5.07
3069 3311 4.927425 TGTTTAGATCACTACCAAACGCTC 59.073 41.667 0.00 0.00 0.00 5.03
3070 3312 5.169295 GTTTAGATCACTACCAAACGCTCT 58.831 41.667 0.00 0.00 0.00 4.09
3071 3313 3.963428 AGATCACTACCAAACGCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
3072 3314 6.519679 TTAGATCACTACCAAACGCTCTTA 57.480 37.500 0.00 0.00 0.00 2.10
3073 3315 5.599999 AGATCACTACCAAACGCTCTTAT 57.400 39.130 0.00 0.00 0.00 1.73
3074 3316 6.710597 AGATCACTACCAAACGCTCTTATA 57.289 37.500 0.00 0.00 0.00 0.98
3075 3317 7.291411 AGATCACTACCAAACGCTCTTATAT 57.709 36.000 0.00 0.00 0.00 0.86
3076 3318 7.727181 AGATCACTACCAAACGCTCTTATATT 58.273 34.615 0.00 0.00 0.00 1.28
3077 3319 8.204836 AGATCACTACCAAACGCTCTTATATTT 58.795 33.333 0.00 0.00 0.00 1.40
3078 3320 7.534085 TCACTACCAAACGCTCTTATATTTG 57.466 36.000 0.00 0.00 32.89 2.32
3079 3321 7.101054 TCACTACCAAACGCTCTTATATTTGT 58.899 34.615 0.00 0.00 31.48 2.83
3080 3322 7.604927 TCACTACCAAACGCTCTTATATTTGTT 59.395 33.333 0.00 0.00 31.48 2.83
3081 3323 8.234546 CACTACCAAACGCTCTTATATTTGTTT 58.765 33.333 0.00 0.00 31.48 2.83
3082 3324 9.439500 ACTACCAAACGCTCTTATATTTGTTTA 57.561 29.630 0.00 0.00 31.48 2.01
3083 3325 9.698617 CTACCAAACGCTCTTATATTTGTTTAC 57.301 33.333 0.00 0.00 31.48 2.01
3084 3326 7.238571 ACCAAACGCTCTTATATTTGTTTACG 58.761 34.615 0.00 0.00 31.48 3.18
3085 3327 6.685403 CCAAACGCTCTTATATTTGTTTACGG 59.315 38.462 0.00 0.00 31.48 4.02
3086 3328 7.413219 CCAAACGCTCTTATATTTGTTTACGGA 60.413 37.037 0.00 0.00 31.48 4.69
3087 3329 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
3088 3330 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
3089 3331 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
3090 3332 6.285990 GCTCTTATATTTGTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
3145 3390 2.188829 GGCGCCTGCATGCATCTTA 61.189 57.895 22.97 0.00 45.35 2.10
3156 3408 5.404096 TGCATGCATCTTAAACATCACAAG 58.596 37.500 18.46 0.00 0.00 3.16
3324 3583 0.392998 ATGACATCAGGACAACGGCC 60.393 55.000 0.00 0.00 0.00 6.13
3335 3594 2.819595 AACGGCCTGTGCTATGCG 60.820 61.111 0.00 0.00 37.74 4.73
3467 3729 2.620251 TGCTATTCCATCCGGTCTTG 57.380 50.000 0.00 0.00 0.00 3.02
3468 3730 1.837439 TGCTATTCCATCCGGTCTTGT 59.163 47.619 0.00 0.00 0.00 3.16
3472 3734 4.879545 GCTATTCCATCCGGTCTTGTAAAA 59.120 41.667 0.00 0.00 0.00 1.52
3473 3735 5.355910 GCTATTCCATCCGGTCTTGTAAAAA 59.644 40.000 0.00 0.00 0.00 1.94
3474 3736 5.897377 ATTCCATCCGGTCTTGTAAAAAG 57.103 39.130 0.00 0.00 0.00 2.27
3476 3738 2.163613 CCATCCGGTCTTGTAAAAAGCC 59.836 50.000 0.00 0.00 0.00 4.35
3634 3896 5.067954 TCCATCGGTCGAATCTAATCAGTA 58.932 41.667 0.00 0.00 0.00 2.74
3689 3951 4.314740 TTGACCCAACTTATGCACAAAC 57.685 40.909 0.00 0.00 0.00 2.93
3690 3952 3.291584 TGACCCAACTTATGCACAAACA 58.708 40.909 0.00 0.00 0.00 2.83
3706 3968 7.204604 TGCACAAACATCATGATCCAATTATC 58.795 34.615 4.86 0.00 0.00 1.75
3707 3969 7.068962 TGCACAAACATCATGATCCAATTATCT 59.931 33.333 4.86 0.00 0.00 1.98
3708 3970 7.594015 GCACAAACATCATGATCCAATTATCTC 59.406 37.037 4.86 0.00 0.00 2.75
3709 3971 8.080417 CACAAACATCATGATCCAATTATCTCC 58.920 37.037 4.86 0.00 0.00 3.71
3769 4033 1.686115 GCTAACTACTACCCCCGTCCA 60.686 57.143 0.00 0.00 0.00 4.02
3935 4228 6.536941 GGTCATACTCAGAAAGGATTGACTTC 59.463 42.308 0.00 0.00 34.88 3.01
3951 4244 7.337942 GGATTGACTTCTTGACTGGATTTATGT 59.662 37.037 0.00 0.00 0.00 2.29
3989 4282 5.368816 GGACAGGGGGAGTATGTATAAAACT 59.631 44.000 0.00 0.00 0.00 2.66
4079 4378 9.696917 CTCTATAAACTTGGTCAAATTTTGCTT 57.303 29.630 4.19 0.00 0.00 3.91
4080 4379 9.474920 TCTATAAACTTGGTCAAATTTTGCTTG 57.525 29.630 4.19 0.00 0.00 4.01
4081 4380 9.474920 CTATAAACTTGGTCAAATTTTGCTTGA 57.525 29.630 4.19 0.00 0.00 3.02
4142 4447 6.881602 GGAGAAATACTATTTAGCTGATGGGG 59.118 42.308 0.00 0.00 0.00 4.96
4247 4569 6.174720 AGACCAATCTTGAAACTGACACTA 57.825 37.500 0.00 0.00 0.00 2.74
4255 4577 6.390721 TCTTGAAACTGACACTATAGCTGAC 58.609 40.000 0.00 0.00 0.00 3.51
4277 4599 4.342092 ACTGCAACCTAATTCAGCAAGTTT 59.658 37.500 0.00 0.00 34.45 2.66
4339 4661 3.691609 CCAGAAGCACTCACCTAATTTCC 59.308 47.826 0.00 0.00 0.00 3.13
4352 4674 4.828387 ACCTAATTTCCGCAGTTAACCAAA 59.172 37.500 0.88 0.00 0.00 3.28
4413 4742 0.690077 CCCCCACTACCTCCTGTACC 60.690 65.000 0.00 0.00 0.00 3.34
4426 4755 1.486726 CCTGTACCACCCCAGATCTTC 59.513 57.143 0.00 0.00 0.00 2.87
4427 4756 1.137086 CTGTACCACCCCAGATCTTCG 59.863 57.143 0.00 0.00 0.00 3.79
4428 4757 0.464452 GTACCACCCCAGATCTTCGG 59.536 60.000 0.00 0.00 0.00 4.30
4429 4758 1.335132 TACCACCCCAGATCTTCGGC 61.335 60.000 0.00 0.00 0.00 5.54
4483 4836 3.257561 CGATGAACTGAGCGGCGG 61.258 66.667 9.78 0.00 0.00 6.13
4533 4886 1.522806 TTGTGAAGCGGCGACAACT 60.523 52.632 12.98 0.00 0.00 3.16
4593 4946 1.597461 CCTTCCCGTTGTCCTCTCC 59.403 63.158 0.00 0.00 0.00 3.71
4652 5005 3.005050 CGCCCACTCCACTCGTAATAATA 59.995 47.826 0.00 0.00 0.00 0.98
4653 5006 4.500205 CGCCCACTCCACTCGTAATAATAA 60.500 45.833 0.00 0.00 0.00 1.40
4655 5008 5.408604 GCCCACTCCACTCGTAATAATAATG 59.591 44.000 0.00 0.00 0.00 1.90
4656 5009 5.408604 CCCACTCCACTCGTAATAATAATGC 59.591 44.000 0.00 0.00 0.00 3.56
4658 5011 6.366332 CCACTCCACTCGTAATAATAATGCTC 59.634 42.308 0.00 0.00 0.00 4.26
4695 5080 0.401105 ATCCACCCCTCTCCTCCATG 60.401 60.000 0.00 0.00 0.00 3.66
4762 5149 1.584495 CGGGTGTGTGTCTCGATCA 59.416 57.895 0.00 0.00 0.00 2.92
4818 5205 4.656117 TGCCGCTCGCGAACAAGA 62.656 61.111 11.33 0.00 42.08 3.02
5085 5481 4.337274 TCTGCAATGATTTAGACCTGCATG 59.663 41.667 0.00 0.00 38.95 4.06
5108 5504 7.273457 TGTATTACAGGGATGGGTTAAGAAA 57.727 36.000 0.00 0.00 0.00 2.52
5109 5505 7.114095 TGTATTACAGGGATGGGTTAAGAAAC 58.886 38.462 0.00 0.00 34.66 2.78
5110 5506 3.067684 ACAGGGATGGGTTAAGAAACG 57.932 47.619 0.00 0.00 36.39 3.60
5111 5507 1.743394 CAGGGATGGGTTAAGAAACGC 59.257 52.381 0.00 0.00 46.00 4.84
5130 5536 1.085091 CACTACGACCTACTGCTCGT 58.915 55.000 1.96 1.96 44.97 4.18
5164 5572 8.693542 AGTAAAATTTAATGACTTCAGCATGC 57.306 30.769 10.51 10.51 34.76 4.06
5165 5573 8.306038 AGTAAAATTTAATGACTTCAGCATGCA 58.694 29.630 21.98 0.00 34.76 3.96
5166 5574 6.956299 AAATTTAATGACTTCAGCATGCAC 57.044 33.333 21.98 4.43 34.76 4.57
5168 5576 1.180029 AATGACTTCAGCATGCACCC 58.820 50.000 21.98 3.14 34.76 4.61
5169 5577 0.038599 ATGACTTCAGCATGCACCCA 59.961 50.000 21.98 8.90 34.76 4.51
5216 5631 4.503910 TGATGAGGTTCACTGTATTTCGG 58.496 43.478 0.00 0.00 0.00 4.30
5220 5635 6.045072 TGAGGTTCACTGTATTTCGGTAAT 57.955 37.500 0.00 0.00 33.83 1.89
5227 5642 8.928733 GTTCACTGTATTTCGGTAATTTCAGTA 58.071 33.333 13.06 3.01 37.72 2.74
5360 5784 1.270252 CCTTTGGCCGAAATGCAAACT 60.270 47.619 6.92 0.00 0.00 2.66
5420 5844 7.712264 TTTGTTGTTGCTGAAATATTTCTGG 57.288 32.000 26.78 20.09 38.02 3.86
5718 6144 0.249657 CAGCGCTCCAAGATACTCCC 60.250 60.000 7.13 0.00 0.00 4.30
5853 6291 3.119291 GACATCGATCGCTTCTGTTGAT 58.881 45.455 11.09 0.00 0.00 2.57
5875 6313 3.136443 TCCTCTTTTGGACTTCTGAGCAA 59.864 43.478 0.00 0.00 0.00 3.91
5877 6315 4.082895 CCTCTTTTGGACTTCTGAGCAATG 60.083 45.833 0.00 0.00 0.00 2.82
5878 6316 3.822735 TCTTTTGGACTTCTGAGCAATGG 59.177 43.478 0.00 0.00 0.00 3.16
5904 6342 1.767759 ATGTGGGCCATAAAGCTGAC 58.232 50.000 10.70 0.00 29.82 3.51
5905 6343 0.323360 TGTGGGCCATAAAGCTGACC 60.323 55.000 10.70 0.00 0.00 4.02
5911 6349 0.729116 CCATAAAGCTGACCTGCACG 59.271 55.000 0.00 0.00 34.99 5.34
5913 6351 2.616960 CATAAAGCTGACCTGCACGTA 58.383 47.619 0.00 0.00 34.99 3.57
5914 6352 2.074547 TAAAGCTGACCTGCACGTAC 57.925 50.000 0.00 0.00 34.99 3.67
5915 6353 0.944311 AAAGCTGACCTGCACGTACG 60.944 55.000 15.01 15.01 34.99 3.67
5916 6354 2.049433 GCTGACCTGCACGTACGT 60.049 61.111 16.72 16.72 0.00 3.57
5925 6363 4.006532 CACGTACGTGCACTGTGT 57.993 55.556 32.93 8.21 39.39 3.72
5926 6364 2.293765 CACGTACGTGCACTGTGTT 58.706 52.632 32.93 0.00 39.39 3.32
5932 6370 1.953559 ACGTGCACTGTGTTTGATCT 58.046 45.000 16.19 0.00 0.00 2.75
5974 6415 7.602517 ATTACCACTCATCTTCTTTTCTTCG 57.397 36.000 0.00 0.00 0.00 3.79
5992 6433 8.817092 TTTCTTCGGGGTAAAATTATCATTCT 57.183 30.769 0.00 0.00 0.00 2.40
5993 6434 8.446599 TTCTTCGGGGTAAAATTATCATTCTC 57.553 34.615 0.00 0.00 0.00 2.87
5994 6435 7.802117 TCTTCGGGGTAAAATTATCATTCTCT 58.198 34.615 0.00 0.00 0.00 3.10
5995 6436 8.272173 TCTTCGGGGTAAAATTATCATTCTCTT 58.728 33.333 0.00 0.00 0.00 2.85
5997 6438 8.446599 TCGGGGTAAAATTATCATTCTCTTTC 57.553 34.615 0.00 0.00 0.00 2.62
5998 6439 7.501225 TCGGGGTAAAATTATCATTCTCTTTCC 59.499 37.037 0.00 0.00 0.00 3.13
5999 6440 7.502561 CGGGGTAAAATTATCATTCTCTTTCCT 59.497 37.037 0.00 0.00 0.00 3.36
6000 6441 9.201989 GGGGTAAAATTATCATTCTCTTTCCTT 57.798 33.333 0.00 0.00 0.00 3.36
6039 6480 7.364522 TCATTCTCCTCGAATAAAACACAAG 57.635 36.000 0.00 0.00 40.33 3.16
6042 6483 6.539649 TCTCCTCGAATAAAACACAAGTTG 57.460 37.500 0.00 0.00 38.17 3.16
6076 6523 3.173668 TGCGAACGTCTTGGCTTATAT 57.826 42.857 0.00 0.00 32.55 0.86
6077 6524 4.310357 TGCGAACGTCTTGGCTTATATA 57.690 40.909 0.00 0.00 32.55 0.86
6078 6525 4.046462 TGCGAACGTCTTGGCTTATATAC 58.954 43.478 0.00 0.00 32.55 1.47
6166 6632 5.053811 GTGAATAGGAAGCTAAAGAGGAGC 58.946 45.833 0.00 0.00 40.42 4.70
6168 6634 1.958288 AGGAAGCTAAAGAGGAGCCA 58.042 50.000 0.00 0.00 41.06 4.75
6529 7039 3.316868 TGAAACGGTGAAAACCTGGAATC 59.683 43.478 0.00 0.00 0.00 2.52
6530 7040 2.951229 ACGGTGAAAACCTGGAATCT 57.049 45.000 0.00 0.00 0.00 2.40
6531 7041 4.360951 AACGGTGAAAACCTGGAATCTA 57.639 40.909 0.00 0.00 0.00 1.98
6682 7195 0.753262 CTCACGGACTCAATAGGGGG 59.247 60.000 0.00 0.00 0.00 5.40
6699 7212 2.053277 GGTCGAGAGGTCACTCCCC 61.053 68.421 0.00 0.00 45.11 4.81
6725 7238 3.458163 CCGCCGTGGAGAAGCCTA 61.458 66.667 0.00 0.00 42.00 3.93
6726 7239 2.797278 CCGCCGTGGAGAAGCCTAT 61.797 63.158 0.00 0.00 42.00 2.57
6727 7240 1.461091 CCGCCGTGGAGAAGCCTATA 61.461 60.000 0.00 0.00 42.00 1.31
6728 7241 0.318784 CGCCGTGGAGAAGCCTATAC 60.319 60.000 0.00 0.00 37.63 1.47
6740 7276 5.372373 AGAAGCCTATACAAGAATGGAAGC 58.628 41.667 0.00 0.00 0.00 3.86
6770 7306 2.037121 TCACTCGAAGCATCTCCAACAA 59.963 45.455 0.00 0.00 0.00 2.83
6771 7307 2.158449 CACTCGAAGCATCTCCAACAAC 59.842 50.000 0.00 0.00 0.00 3.32
6775 7311 2.157738 GAAGCATCTCCAACAACAGCT 58.842 47.619 0.00 0.00 0.00 4.24
6811 7347 5.733226 GCAAAAAGCACTTGGTGTAAATT 57.267 34.783 0.00 0.00 44.79 1.82
6821 7357 6.680378 GCACTTGGTGTAAATTTAGGGCATAG 60.680 42.308 5.88 0.48 35.75 2.23
6843 7379 3.263941 GTGCTTTGTAGGGCACGG 58.736 61.111 2.40 0.00 46.87 4.94
6874 7410 5.278061 AGTGTCTCCAATAGCTACCCTAAA 58.722 41.667 0.00 0.00 0.00 1.85
6875 7411 5.364157 AGTGTCTCCAATAGCTACCCTAAAG 59.636 44.000 0.00 0.00 0.00 1.85
6876 7412 4.654262 TGTCTCCAATAGCTACCCTAAAGG 59.346 45.833 0.00 0.00 43.78 3.11
6877 7413 3.646637 TCTCCAATAGCTACCCTAAAGGC 59.353 47.826 0.00 0.00 40.58 4.35
6878 7414 3.648545 CTCCAATAGCTACCCTAAAGGCT 59.351 47.826 0.00 0.00 40.58 4.58
6879 7415 4.823107 TCCAATAGCTACCCTAAAGGCTA 58.177 43.478 0.00 0.00 40.58 3.93
6880 7416 5.221303 TCCAATAGCTACCCTAAAGGCTAA 58.779 41.667 0.00 0.00 40.06 3.09
6988 7525 2.192605 GCCTCCAAATGGCGATGTT 58.807 52.632 0.00 0.00 41.03 2.71
7012 7675 2.202743 GCGCGTGGCTATGACTGA 60.203 61.111 8.43 0.00 39.11 3.41
7046 7709 0.743097 GCCTTGATAGTACGGTCGGT 59.257 55.000 0.00 0.00 0.00 4.69
7066 7729 2.033236 GTCGTCGCACTGAAATTCAACA 60.033 45.455 0.00 0.00 0.00 3.33
7076 7739 4.037923 ACTGAAATTCAACACCAAAGCGAT 59.962 37.500 0.00 0.00 0.00 4.58
7097 7760 4.373116 ATGGCCGCGACTGAACGT 62.373 61.111 8.23 0.00 35.59 3.99
7106 7769 1.208614 GACTGAACGTCGCGGTAGT 59.791 57.895 6.13 0.48 32.04 2.73
7108 7771 1.862147 CTGAACGTCGCGGTAGTCG 60.862 63.158 6.13 6.64 42.76 4.18
7109 7772 2.174349 GAACGTCGCGGTAGTCGT 59.826 61.111 6.13 7.30 41.72 4.34
7119 7783 0.170561 CGGTAGTCGTCTGGTCCTTG 59.829 60.000 0.00 0.00 0.00 3.61
7128 7792 2.480419 CGTCTGGTCCTTGACATGTTTC 59.520 50.000 0.00 0.00 33.68 2.78
7176 7840 1.472728 GCGGATAGAAATCGGTGGTGT 60.473 52.381 0.00 0.00 35.46 4.16
7228 7899 3.878667 GCCAATCCGGGGAGAGGG 61.879 72.222 0.00 0.00 34.06 4.30
7230 7901 3.878667 CAATCCGGGGAGAGGGGC 61.879 72.222 0.00 0.00 0.00 5.80
7267 8026 2.125512 GGTGCGGCTGAGATTCGT 60.126 61.111 0.00 0.00 0.00 3.85
7268 8027 2.167861 GGTGCGGCTGAGATTCGTC 61.168 63.158 0.00 0.00 0.00 4.20
7270 8029 2.184322 GCGGCTGAGATTCGTCCA 59.816 61.111 0.00 0.00 0.00 4.02
7279 8039 4.498241 CTGAGATTCGTCCAATTCAGTGA 58.502 43.478 0.00 0.00 31.56 3.41
7302 8062 2.281345 ACGACGACACGGGAGAGT 60.281 61.111 0.00 0.00 37.61 3.24
7308 8068 1.891150 ACGACACGGGAGAGTTATTGT 59.109 47.619 0.00 0.00 32.53 2.71
7311 8071 4.022068 ACGACACGGGAGAGTTATTGTTTA 60.022 41.667 0.00 0.00 32.53 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.066203 GCATCGTTTACAAGTAATGGGGG 59.934 47.826 0.00 0.00 0.00 5.40
1 2 3.066203 GGCATCGTTTACAAGTAATGGGG 59.934 47.826 0.00 0.00 0.00 4.96
28 29 8.779354 ACTACTCCTTTATTCACTTAGCAAAG 57.221 34.615 0.00 0.00 38.77 2.77
93 95 1.609208 ATGCAGATAAATGTCGCCCC 58.391 50.000 0.00 0.00 0.00 5.80
94 96 4.829064 TTTATGCAGATAAATGTCGCCC 57.171 40.909 0.00 0.00 30.47 6.13
141 143 4.212716 ACCTAGCCAGTTCATATGTACGA 58.787 43.478 1.90 0.00 0.00 3.43
156 158 6.645306 AGATCTAGACTTCAAAAACCTAGCC 58.355 40.000 0.00 0.00 0.00 3.93
158 160 9.145865 GTCAAGATCTAGACTTCAAAAACCTAG 57.854 37.037 0.00 0.00 0.00 3.02
163 165 5.408604 GCGGTCAAGATCTAGACTTCAAAAA 59.591 40.000 0.00 0.00 35.18 1.94
167 169 3.089284 TGCGGTCAAGATCTAGACTTCA 58.911 45.455 0.00 0.00 35.18 3.02
168 170 3.784701 TGCGGTCAAGATCTAGACTTC 57.215 47.619 0.00 0.00 35.18 3.01
170 172 3.243234 CGAATGCGGTCAAGATCTAGACT 60.243 47.826 0.00 0.00 35.18 3.24
173 176 3.355626 TCGAATGCGGTCAAGATCTAG 57.644 47.619 0.00 0.00 38.28 2.43
209 212 8.532341 CAAGCTGACAAGTAAACGTATATACTG 58.468 37.037 11.05 7.14 32.84 2.74
239 245 2.689983 AGTTGCTGTTCCTGGTTTTCAG 59.310 45.455 0.00 0.28 43.00 3.02
244 250 2.572290 GTACAGTTGCTGTTCCTGGTT 58.428 47.619 7.11 0.00 42.59 3.67
297 303 2.836888 GGCAGGGTGTATAGGCCC 59.163 66.667 0.00 3.83 45.16 5.80
346 352 1.153628 GCCGCTTAAAGAGAGCCGA 60.154 57.895 0.00 0.00 36.81 5.54
347 353 0.811616 ATGCCGCTTAAAGAGAGCCG 60.812 55.000 0.00 0.00 36.81 5.52
348 354 1.332065 GAATGCCGCTTAAAGAGAGCC 59.668 52.381 0.00 0.00 36.81 4.70
349 355 1.332065 GGAATGCCGCTTAAAGAGAGC 59.668 52.381 0.00 0.00 36.79 4.09
465 501 2.558147 GGGGGAAAGGAGGGGCTTT 61.558 63.158 0.00 0.00 0.00 3.51
479 515 1.538876 TGAGTGACAAGGGAGGGGG 60.539 63.158 0.00 0.00 0.00 5.40
785 829 0.106217 GAGGTGAGGAGAGAGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
811 855 4.287326 GGAAGAAGAAGAGGAAAGAAGGGA 59.713 45.833 0.00 0.00 0.00 4.20
813 857 5.487433 GAGGAAGAAGAAGAGGAAAGAAGG 58.513 45.833 0.00 0.00 0.00 3.46
848 901 2.914278 TCGAGGGGGAGTTAATTTCCAA 59.086 45.455 10.17 0.00 36.40 3.53
876 929 2.339769 GGACTATAAGAGGGCCATGGT 58.660 52.381 14.67 0.00 0.00 3.55
879 932 3.941629 TCTTGGACTATAAGAGGGCCAT 58.058 45.455 6.18 0.00 34.73 4.40
928 982 0.889186 CCAGGCACGCCACTACTTTT 60.889 55.000 11.35 0.00 38.92 2.27
999 1059 1.070601 GGCAGGTTCCTTTGCAACATT 59.929 47.619 0.00 0.00 42.02 2.71
1265 1325 3.430862 GCTTGAACGCGCATCCCA 61.431 61.111 5.73 0.00 0.00 4.37
1490 1550 3.603158 TTGAGCGGACATAGCTTAACA 57.397 42.857 0.00 0.00 46.13 2.41
1498 1558 0.531974 GCCGGAATTGAGCGGACATA 60.532 55.000 5.05 0.00 0.00 2.29
1771 1842 4.214119 CACATGTACAAGTGGTGAAAGGAG 59.786 45.833 20.79 0.00 32.24 3.69
1847 1921 2.679355 TTGTTTGTCACGTAGCATGC 57.321 45.000 10.51 10.51 0.00 4.06
1848 1922 3.946402 TGTTTGTTTGTCACGTAGCATG 58.054 40.909 0.00 0.00 0.00 4.06
1849 1923 3.548014 GCTGTTTGTTTGTCACGTAGCAT 60.548 43.478 0.00 0.00 0.00 3.79
1850 1924 2.223157 GCTGTTTGTTTGTCACGTAGCA 60.223 45.455 0.00 0.00 0.00 3.49
1851 1925 2.223157 TGCTGTTTGTTTGTCACGTAGC 60.223 45.455 0.00 0.00 0.00 3.58
1882 1956 4.339530 CAGTGGACACATAGAGCTAGCTAA 59.660 45.833 19.38 9.65 0.00 3.09
1896 1970 6.806739 GGTGAAATTAATTAAGCAGTGGACAC 59.193 38.462 0.01 0.00 0.00 3.67
1898 1972 6.919721 TGGTGAAATTAATTAAGCAGTGGAC 58.080 36.000 0.01 0.00 0.00 4.02
1949 2031 6.071952 CCAATGAGGTGCTAATTTGTTAGTGT 60.072 38.462 0.00 0.00 0.00 3.55
1950 2032 6.324819 CCAATGAGGTGCTAATTTGTTAGTG 58.675 40.000 0.00 0.00 0.00 2.74
1969 2062 8.509690 CCTATACATCTGCAGATTTAACCAATG 58.490 37.037 26.70 15.68 31.21 2.82
2025 2142 0.037697 TGTGTGTACCTGTGGCGATC 60.038 55.000 0.00 0.00 0.00 3.69
2045 2162 3.703052 CAGGGGAAGATTAAAGCTGCATT 59.297 43.478 1.02 0.00 0.00 3.56
2066 2183 1.078497 AATGGCGAGGACGAATGCA 60.078 52.632 0.00 0.00 42.66 3.96
2101 2218 0.589229 CGCGTCCATCGTGTCTCTAC 60.589 60.000 0.00 0.00 43.87 2.59
2136 2254 0.612744 TCACTCATTCCACGGCATGA 59.387 50.000 0.00 0.00 0.00 3.07
2164 2306 0.106708 AACCATCCATCCATCGACCG 59.893 55.000 0.00 0.00 0.00 4.79
2165 2307 2.222027 GAAACCATCCATCCATCGACC 58.778 52.381 0.00 0.00 0.00 4.79
2166 2308 1.867233 CGAAACCATCCATCCATCGAC 59.133 52.381 0.00 0.00 0.00 4.20
2167 2309 1.810031 GCGAAACCATCCATCCATCGA 60.810 52.381 0.00 0.00 0.00 3.59
2168 2310 0.588252 GCGAAACCATCCATCCATCG 59.412 55.000 0.00 0.00 0.00 3.84
2169 2311 1.605710 CTGCGAAACCATCCATCCATC 59.394 52.381 0.00 0.00 0.00 3.51
2170 2312 1.683943 CTGCGAAACCATCCATCCAT 58.316 50.000 0.00 0.00 0.00 3.41
2171 2313 0.394216 CCTGCGAAACCATCCATCCA 60.394 55.000 0.00 0.00 0.00 3.41
2172 2314 1.728490 GCCTGCGAAACCATCCATCC 61.728 60.000 0.00 0.00 0.00 3.51
2173 2315 1.729881 GCCTGCGAAACCATCCATC 59.270 57.895 0.00 0.00 0.00 3.51
2174 2316 2.114670 CGCCTGCGAAACCATCCAT 61.115 57.895 5.43 0.00 42.83 3.41
2175 2317 2.745884 CGCCTGCGAAACCATCCA 60.746 61.111 5.43 0.00 42.83 3.41
2176 2318 2.435938 TCGCCTGCGAAACCATCC 60.436 61.111 12.40 0.00 46.01 3.51
2204 2346 2.927856 TCCTGCGTCCACCACCAT 60.928 61.111 0.00 0.00 0.00 3.55
2225 2370 0.035056 CCACCACCACATCCTCTTCC 60.035 60.000 0.00 0.00 0.00 3.46
2226 2371 0.693049 ACCACCACCACATCCTCTTC 59.307 55.000 0.00 0.00 0.00 2.87
2227 2372 0.401738 CACCACCACCACATCCTCTT 59.598 55.000 0.00 0.00 0.00 2.85
2519 2665 0.470766 AACGGAGTGTAAAGCCCACA 59.529 50.000 0.00 0.00 45.00 4.17
2614 2806 6.403333 TGCATCGATAACTGTTAACTTGAC 57.597 37.500 7.22 0.00 0.00 3.18
2619 2811 7.464358 AGACAAATGCATCGATAACTGTTAAC 58.536 34.615 0.00 0.00 0.00 2.01
2626 2818 5.277538 GGAGGAAGACAAATGCATCGATAAC 60.278 44.000 0.00 0.00 0.00 1.89
2628 2820 4.101585 AGGAGGAAGACAAATGCATCGATA 59.898 41.667 0.00 0.00 0.00 2.92
2850 3057 4.275810 ACATGTAGGCAGATTTCAAGCAT 58.724 39.130 0.00 0.00 0.00 3.79
2851 3058 3.689347 ACATGTAGGCAGATTTCAAGCA 58.311 40.909 0.00 0.00 0.00 3.91
2854 3061 3.055458 TCGGACATGTAGGCAGATTTCAA 60.055 43.478 0.00 0.00 0.00 2.69
2865 3072 5.005779 GTGCAGAAAATACTCGGACATGTAG 59.994 44.000 0.00 0.00 0.00 2.74
3020 3262 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
3021 3263 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
3022 3264 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
3023 3265 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
3039 3281 9.654663 GTTTGGTAGTGATCTAAACACTCTTAT 57.345 33.333 0.00 0.00 45.58 1.73
3040 3282 7.811236 CGTTTGGTAGTGATCTAAACACTCTTA 59.189 37.037 0.00 0.00 45.58 2.10
3041 3283 6.645415 CGTTTGGTAGTGATCTAAACACTCTT 59.355 38.462 0.00 0.00 45.58 2.85
3042 3284 6.157211 CGTTTGGTAGTGATCTAAACACTCT 58.843 40.000 0.00 0.00 45.58 3.24
3043 3285 5.163982 GCGTTTGGTAGTGATCTAAACACTC 60.164 44.000 0.00 0.00 45.58 3.51
3045 3287 4.689345 AGCGTTTGGTAGTGATCTAAACAC 59.311 41.667 0.00 0.00 36.53 3.32
3046 3288 4.890088 AGCGTTTGGTAGTGATCTAAACA 58.110 39.130 0.00 0.00 36.53 2.83
3047 3289 5.169295 AGAGCGTTTGGTAGTGATCTAAAC 58.831 41.667 0.00 0.00 34.51 2.01
3048 3290 5.401531 AGAGCGTTTGGTAGTGATCTAAA 57.598 39.130 0.00 0.00 0.00 1.85
3049 3291 5.401531 AAGAGCGTTTGGTAGTGATCTAA 57.598 39.130 0.00 0.00 0.00 2.10
3050 3292 6.710597 ATAAGAGCGTTTGGTAGTGATCTA 57.289 37.500 0.00 0.00 0.00 1.98
3051 3293 3.963428 AAGAGCGTTTGGTAGTGATCT 57.037 42.857 0.00 0.00 0.00 2.75
3052 3294 7.948278 AATATAAGAGCGTTTGGTAGTGATC 57.052 36.000 0.00 0.00 0.00 2.92
3053 3295 7.769044 ACAAATATAAGAGCGTTTGGTAGTGAT 59.231 33.333 0.00 0.00 36.23 3.06
3054 3296 7.101054 ACAAATATAAGAGCGTTTGGTAGTGA 58.899 34.615 0.00 0.00 36.23 3.41
3055 3297 7.303634 ACAAATATAAGAGCGTTTGGTAGTG 57.696 36.000 0.00 0.00 36.23 2.74
3056 3298 7.916914 AACAAATATAAGAGCGTTTGGTAGT 57.083 32.000 0.00 0.00 36.23 2.73
3057 3299 9.698617 GTAAACAAATATAAGAGCGTTTGGTAG 57.301 33.333 0.00 0.00 36.23 3.18
3058 3300 8.382130 CGTAAACAAATATAAGAGCGTTTGGTA 58.618 33.333 0.00 0.00 36.23 3.25
3059 3301 7.238571 CGTAAACAAATATAAGAGCGTTTGGT 58.761 34.615 0.00 0.00 36.23 3.67
3060 3302 6.685403 CCGTAAACAAATATAAGAGCGTTTGG 59.315 38.462 0.00 0.00 36.23 3.28
3061 3303 7.457868 TCCGTAAACAAATATAAGAGCGTTTG 58.542 34.615 0.00 0.00 37.52 2.93
3062 3304 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
3063 3305 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
3064 3306 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
3065 3307 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
3066 3308 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
3067 3309 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
3068 3310 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
3069 3311 8.199449 TGTACTCCCTCCGTAAACAAATATAAG 58.801 37.037 0.00 0.00 0.00 1.73
3070 3312 8.076910 TGTACTCCCTCCGTAAACAAATATAA 57.923 34.615 0.00 0.00 0.00 0.98
3071 3313 7.658525 TGTACTCCCTCCGTAAACAAATATA 57.341 36.000 0.00 0.00 0.00 0.86
3072 3314 6.549433 TGTACTCCCTCCGTAAACAAATAT 57.451 37.500 0.00 0.00 0.00 1.28
3073 3315 5.999205 TGTACTCCCTCCGTAAACAAATA 57.001 39.130 0.00 0.00 0.00 1.40
3074 3316 4.895668 TGTACTCCCTCCGTAAACAAAT 57.104 40.909 0.00 0.00 0.00 2.32
3075 3317 4.040706 ACATGTACTCCCTCCGTAAACAAA 59.959 41.667 0.00 0.00 0.00 2.83
3076 3318 3.579586 ACATGTACTCCCTCCGTAAACAA 59.420 43.478 0.00 0.00 0.00 2.83
3077 3319 3.167485 ACATGTACTCCCTCCGTAAACA 58.833 45.455 0.00 0.00 0.00 2.83
3078 3320 3.881937 ACATGTACTCCCTCCGTAAAC 57.118 47.619 0.00 0.00 0.00 2.01
3079 3321 4.142093 GCTAACATGTACTCCCTCCGTAAA 60.142 45.833 0.00 0.00 0.00 2.01
3080 3322 3.382546 GCTAACATGTACTCCCTCCGTAA 59.617 47.826 0.00 0.00 0.00 3.18
3081 3323 2.954318 GCTAACATGTACTCCCTCCGTA 59.046 50.000 0.00 0.00 0.00 4.02
3082 3324 1.755380 GCTAACATGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
3083 3325 1.068741 GGCTAACATGTACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
3084 3326 2.103263 CTGGCTAACATGTACTCCCTCC 59.897 54.545 0.00 0.00 0.00 4.30
3085 3327 2.766828 ACTGGCTAACATGTACTCCCTC 59.233 50.000 0.00 0.00 0.00 4.30
3086 3328 2.834113 ACTGGCTAACATGTACTCCCT 58.166 47.619 0.00 0.00 0.00 4.20
3087 3329 3.270877 CAACTGGCTAACATGTACTCCC 58.729 50.000 0.00 0.00 0.00 4.30
3088 3330 3.055385 TCCAACTGGCTAACATGTACTCC 60.055 47.826 0.00 0.71 34.44 3.85
3089 3331 4.184629 CTCCAACTGGCTAACATGTACTC 58.815 47.826 0.00 0.00 34.44 2.59
3090 3332 3.583086 ACTCCAACTGGCTAACATGTACT 59.417 43.478 0.00 0.00 34.44 2.73
3453 3715 3.504520 GCTTTTTACAAGACCGGATGGAA 59.495 43.478 9.46 4.08 39.21 3.53
3457 3719 2.081462 CGGCTTTTTACAAGACCGGAT 58.919 47.619 9.46 0.00 35.14 4.18
3485 3747 7.857734 TCGGAGACTTTGCATATCAAATTAA 57.142 32.000 0.00 0.00 43.14 1.40
3486 3748 7.857734 TTCGGAGACTTTGCATATCAAATTA 57.142 32.000 0.00 0.00 43.14 1.40
3498 3760 7.860373 TGTCAAATTTACATTTCGGAGACTTTG 59.140 33.333 0.00 0.00 34.32 2.77
3634 3896 6.933514 ACTTTGACCAACCATATTTTCCAT 57.066 33.333 0.00 0.00 0.00 3.41
3663 3925 4.037446 TGTGCATAAGTTGGGTCAAACTTC 59.963 41.667 6.74 0.00 45.10 3.01
3665 3927 3.561143 TGTGCATAAGTTGGGTCAAACT 58.439 40.909 0.00 0.00 42.21 2.66
3689 3951 8.304596 CCAAAAGGAGATAATTGGATCATGATG 58.695 37.037 14.30 0.00 44.01 3.07
3690 3952 8.229605 TCCAAAAGGAGATAATTGGATCATGAT 58.770 33.333 8.25 8.25 44.71 2.45
3747 4011 1.406898 GACGGGGGTAGTAGTTAGCAC 59.593 57.143 0.00 0.00 32.27 4.40
3762 4026 1.821216 AGCATTAACTTGTGGACGGG 58.179 50.000 0.00 0.00 0.00 5.28
3769 4033 8.135529 GGTCAAACTTAGAAAGCATTAACTTGT 58.864 33.333 0.00 0.00 0.00 3.16
3951 4244 2.109834 CCCTGTCCCCAAATATATGGCA 59.890 50.000 0.00 0.00 39.26 4.92
3989 4282 7.461749 ACTCCTCCAGTTTAGAAAATCATGAA 58.538 34.615 0.00 0.00 26.56 2.57
4057 4352 8.141835 GTCAAGCAAAATTTGACCAAGTTTAT 57.858 30.769 10.26 0.00 45.40 1.40
4100 4399 9.778741 GTATTTCTCCATTCCATAATGTAGTCA 57.221 33.333 0.00 0.00 40.84 3.41
4123 4428 5.171339 CTGCCCCATCAGCTAAATAGTAT 57.829 43.478 0.00 0.00 0.00 2.12
4142 4447 4.870426 TGCTGTGTTTTAGTCTATAGCTGC 59.130 41.667 0.00 0.00 0.00 5.25
4247 4569 5.102953 TGAATTAGGTTGCAGTCAGCTAT 57.897 39.130 0.00 0.00 45.94 2.97
4255 4577 4.510038 AACTTGCTGAATTAGGTTGCAG 57.490 40.909 0.00 0.00 35.02 4.41
4277 4599 3.758755 CCTGTGGCAATCAGCTATAGA 57.241 47.619 3.21 0.00 44.05 1.98
4339 4661 6.808212 AGAATCATCATTTTTGGTTAACTGCG 59.192 34.615 5.42 0.00 0.00 5.18
4352 4674 9.813446 GCTATTTTCTTCCAAGAATCATCATTT 57.187 29.630 2.59 0.00 43.92 2.32
4413 4742 2.190578 GGCCGAAGATCTGGGGTG 59.809 66.667 13.42 0.00 0.00 4.61
4426 4755 2.104792 TCTGGATTTTATCAGGAGGCCG 59.895 50.000 0.00 0.00 0.00 6.13
4427 4756 3.749226 CTCTGGATTTTATCAGGAGGCC 58.251 50.000 0.00 0.00 0.00 5.19
4428 4757 3.145286 GCTCTGGATTTTATCAGGAGGC 58.855 50.000 0.00 0.00 33.27 4.70
4429 4758 4.387598 CTGCTCTGGATTTTATCAGGAGG 58.612 47.826 0.00 0.00 33.27 4.30
4483 4836 4.498177 GGAAAGGAAAAGAGTCACTGTTGC 60.498 45.833 0.00 0.00 34.91 4.17
4652 5005 4.809496 CAGGGCCGGCAGAGCATT 62.809 66.667 30.85 1.41 0.00 3.56
4695 5080 0.820871 ACCAGAGAAGCTGTCGATCC 59.179 55.000 0.00 0.00 43.33 3.36
4717 5102 2.210116 GGTTAATCATGATGGCGTCGT 58.790 47.619 9.46 0.00 0.00 4.34
4775 5162 1.338973 TCCCGTTCCATATCTACGCAC 59.661 52.381 0.00 0.00 34.16 5.34
4868 5255 1.667724 CTGACTTCAACGGATCCATGC 59.332 52.381 13.41 0.00 0.00 4.06
4869 5256 1.667724 GCTGACTTCAACGGATCCATG 59.332 52.381 13.41 10.35 0.00 3.66
4870 5257 1.556911 AGCTGACTTCAACGGATCCAT 59.443 47.619 13.41 0.00 0.00 3.41
4877 5268 0.304705 AACGCAAGCTGACTTCAACG 59.695 50.000 0.00 0.00 45.62 4.10
5085 5481 6.259387 CGTTTCTTAACCCATCCCTGTAATAC 59.741 42.308 0.00 0.00 0.00 1.89
5108 5504 1.505353 GCAGTAGGTCGTAGTGCGT 59.495 57.895 14.74 0.00 45.91 5.24
5109 5505 4.379221 GCAGTAGGTCGTAGTGCG 57.621 61.111 14.74 0.00 45.91 5.34
5118 5524 5.438833 ACTTCTCTATAACGAGCAGTAGGT 58.561 41.667 0.00 0.00 36.08 3.08
5161 5569 2.014010 AGTGAAAACCATGGGTGCAT 57.986 45.000 18.09 0.00 35.34 3.96
5162 5570 1.686052 GAAGTGAAAACCATGGGTGCA 59.314 47.619 18.09 9.23 35.34 4.57
5163 5571 1.000843 GGAAGTGAAAACCATGGGTGC 59.999 52.381 18.09 6.31 35.34 5.01
5164 5572 2.035832 GTGGAAGTGAAAACCATGGGTG 59.964 50.000 18.09 0.00 35.34 4.61
5165 5573 2.091333 AGTGGAAGTGAAAACCATGGGT 60.091 45.455 18.09 6.57 37.65 4.51
5166 5574 2.297033 CAGTGGAAGTGAAAACCATGGG 59.703 50.000 18.09 0.00 40.62 4.00
5227 5642 4.084013 CGAAAGGTAAACATTTCAGCGTCT 60.084 41.667 17.35 0.00 44.18 4.18
5420 5844 5.901552 TGTGATGGTTTTCCTTTTCAGTTC 58.098 37.500 0.00 0.00 41.38 3.01
5429 5853 6.388619 ACCTACTTATGTGATGGTTTTCCT 57.611 37.500 0.00 0.00 41.38 3.36
5637 6063 2.178521 GCGACGCCTTTCTCGAGA 59.821 61.111 12.08 12.08 31.24 4.04
5799 6229 3.118038 GTGGCCTGGTGTAATCAATAGGA 60.118 47.826 3.32 0.00 33.49 2.94
5853 6291 2.705658 TGCTCAGAAGTCCAAAAGAGGA 59.294 45.455 0.00 0.00 34.64 3.71
5886 6324 0.323360 GGTCAGCTTTATGGCCCACA 60.323 55.000 0.00 0.00 39.15 4.17
5899 6337 2.049433 ACGTACGTGCAGGTCAGC 60.049 61.111 22.14 6.93 0.00 4.26
5911 6349 2.800544 AGATCAAACACAGTGCACGTAC 59.199 45.455 12.01 0.00 0.00 3.67
5913 6351 1.953559 AGATCAAACACAGTGCACGT 58.046 45.000 12.01 9.84 0.00 4.49
5914 6352 3.059884 AGTAGATCAAACACAGTGCACG 58.940 45.455 12.01 9.15 0.00 5.34
5915 6353 3.809832 ACAGTAGATCAAACACAGTGCAC 59.190 43.478 9.40 9.40 0.00 4.57
5916 6354 4.071961 ACAGTAGATCAAACACAGTGCA 57.928 40.909 0.00 0.00 0.00 4.57
5917 6355 4.083802 GGAACAGTAGATCAAACACAGTGC 60.084 45.833 0.00 0.00 0.00 4.40
5918 6356 5.300752 AGGAACAGTAGATCAAACACAGTG 58.699 41.667 0.00 0.00 0.00 3.66
5919 6357 5.305644 AGAGGAACAGTAGATCAAACACAGT 59.694 40.000 0.00 0.00 0.00 3.55
5920 6358 5.788450 AGAGGAACAGTAGATCAAACACAG 58.212 41.667 0.00 0.00 0.00 3.66
5921 6359 5.808366 AGAGGAACAGTAGATCAAACACA 57.192 39.130 0.00 0.00 0.00 3.72
5922 6360 5.800941 CGTAGAGGAACAGTAGATCAAACAC 59.199 44.000 0.00 0.00 0.00 3.32
5923 6361 5.105877 CCGTAGAGGAACAGTAGATCAAACA 60.106 44.000 0.00 0.00 45.00 2.83
5924 6362 5.341617 CCGTAGAGGAACAGTAGATCAAAC 58.658 45.833 0.00 0.00 45.00 2.93
5925 6363 5.578005 CCGTAGAGGAACAGTAGATCAAA 57.422 43.478 0.00 0.00 45.00 2.69
5957 6395 3.944087 ACCCCGAAGAAAAGAAGATGAG 58.056 45.455 0.00 0.00 0.00 2.90
5974 6415 8.768501 AGGAAAGAGAATGATAATTTTACCCC 57.231 34.615 0.00 0.00 0.00 4.95
6015 6456 7.444183 AACTTGTGTTTTATTCGAGGAGAATGA 59.556 33.333 3.86 0.00 40.46 2.57
6016 6457 7.535258 CAACTTGTGTTTTATTCGAGGAGAATG 59.465 37.037 3.86 0.00 40.91 2.67
6017 6458 7.228706 ACAACTTGTGTTTTATTCGAGGAGAAT 59.771 33.333 0.00 0.00 44.41 2.40
6018 6459 6.540914 ACAACTTGTGTTTTATTCGAGGAGAA 59.459 34.615 0.00 0.00 39.50 2.87
6019 6460 6.053005 ACAACTTGTGTTTTATTCGAGGAGA 58.947 36.000 0.00 0.00 37.01 3.71
6020 6461 6.300354 ACAACTTGTGTTTTATTCGAGGAG 57.700 37.500 0.00 0.00 37.01 3.69
6049 6490 2.158841 GCCAAGACGTTCGCATTCTTTA 59.841 45.455 0.00 0.00 0.00 1.85
6052 6493 0.320771 AGCCAAGACGTTCGCATTCT 60.321 50.000 0.00 0.00 0.00 2.40
6053 6494 0.517316 AAGCCAAGACGTTCGCATTC 59.483 50.000 0.00 0.00 0.00 2.67
6055 6496 2.024176 ATAAGCCAAGACGTTCGCAT 57.976 45.000 0.00 0.00 0.00 4.73
6056 6497 2.658373 TATAAGCCAAGACGTTCGCA 57.342 45.000 0.00 0.00 0.00 5.10
6057 6498 4.046462 TGTATATAAGCCAAGACGTTCGC 58.954 43.478 0.00 0.00 0.00 4.70
6058 6499 7.753580 TGATATGTATATAAGCCAAGACGTTCG 59.246 37.037 0.00 0.00 0.00 3.95
6059 6500 8.981724 TGATATGTATATAAGCCAAGACGTTC 57.018 34.615 0.00 0.00 0.00 3.95
6176 6642 4.564110 GTACCCCCATCGGCAGGC 62.564 72.222 0.00 0.00 0.00 4.85
6351 6817 3.274288 CAGGTATTTCAGGCTCAGTTCC 58.726 50.000 0.00 0.00 0.00 3.62
6383 6849 9.639563 AGGAAAGAAAGAAAGAAGAAGAAGATT 57.360 29.630 0.00 0.00 0.00 2.40
6384 6850 9.639563 AAGGAAAGAAAGAAAGAAGAAGAAGAT 57.360 29.630 0.00 0.00 0.00 2.40
6529 7039 1.520666 CCGGCCAACCCACTAGTAG 59.479 63.158 2.24 0.00 0.00 2.57
6530 7040 2.662070 GCCGGCCAACCCACTAGTA 61.662 63.158 18.11 0.00 0.00 1.82
6531 7041 4.029809 GCCGGCCAACCCACTAGT 62.030 66.667 18.11 0.00 0.00 2.57
6673 7186 1.041437 GACCTCTCGACCCCCTATTG 58.959 60.000 0.00 0.00 0.00 1.90
6682 7195 2.408241 CGGGGAGTGACCTCTCGAC 61.408 68.421 0.00 0.00 39.28 4.20
6724 7237 3.491964 CGTCCGGCTTCCATTCTTGTATA 60.492 47.826 0.00 0.00 0.00 1.47
6725 7238 2.741878 CGTCCGGCTTCCATTCTTGTAT 60.742 50.000 0.00 0.00 0.00 2.29
6726 7239 1.404986 CGTCCGGCTTCCATTCTTGTA 60.405 52.381 0.00 0.00 0.00 2.41
6727 7240 0.673644 CGTCCGGCTTCCATTCTTGT 60.674 55.000 0.00 0.00 0.00 3.16
6728 7241 0.391130 TCGTCCGGCTTCCATTCTTG 60.391 55.000 0.00 0.00 0.00 3.02
6756 7292 2.157738 GAGCTGTTGTTGGAGATGCTT 58.842 47.619 0.00 0.00 0.00 3.91
6770 7306 2.500098 TGCCGTCCTAAAATAGAGCTGT 59.500 45.455 0.00 0.00 0.00 4.40
6771 7307 3.179443 TGCCGTCCTAAAATAGAGCTG 57.821 47.619 0.00 0.00 0.00 4.24
6775 7311 4.762765 TGCTTTTTGCCGTCCTAAAATAGA 59.237 37.500 0.00 0.00 42.00 1.98
6798 7334 6.727394 TCTATGCCCTAAATTTACACCAAGT 58.273 36.000 0.00 0.00 0.00 3.16
6811 7347 4.016444 CAAAGCACCTTTCTATGCCCTAA 58.984 43.478 0.00 0.00 43.12 2.69
6821 7357 1.616159 TGCCCTACAAAGCACCTTTC 58.384 50.000 0.00 0.00 33.08 2.62
6843 7379 4.397417 AGCTATTGGAGACACTCATTTTGC 59.603 41.667 0.00 0.00 42.67 3.68
6874 7410 3.466395 TTTGGTGCCCTATTTTAGCCT 57.534 42.857 0.00 0.00 0.00 4.58
6875 7411 4.250464 GTTTTTGGTGCCCTATTTTAGCC 58.750 43.478 0.00 0.00 0.00 3.93
6876 7412 4.888917 TGTTTTTGGTGCCCTATTTTAGC 58.111 39.130 0.00 0.00 0.00 3.09
6877 7413 5.804979 CGATGTTTTTGGTGCCCTATTTTAG 59.195 40.000 0.00 0.00 0.00 1.85
6878 7414 5.477291 TCGATGTTTTTGGTGCCCTATTTTA 59.523 36.000 0.00 0.00 0.00 1.52
6879 7415 4.282195 TCGATGTTTTTGGTGCCCTATTTT 59.718 37.500 0.00 0.00 0.00 1.82
6880 7416 3.829601 TCGATGTTTTTGGTGCCCTATTT 59.170 39.130 0.00 0.00 0.00 1.40
7027 7690 0.743097 ACCGACCGTACTATCAAGGC 59.257 55.000 0.00 0.00 0.00 4.35
7029 7692 1.667724 ACGACCGACCGTACTATCAAG 59.332 52.381 0.00 0.00 41.44 3.02
7030 7693 1.665679 GACGACCGACCGTACTATCAA 59.334 52.381 2.24 0.00 43.49 2.57
7031 7694 1.290203 GACGACCGACCGTACTATCA 58.710 55.000 2.24 0.00 43.49 2.15
7034 7697 2.452813 GCGACGACCGACCGTACTA 61.453 63.158 0.00 0.00 43.49 1.82
7046 7709 2.033236 GTGTTGAATTTCAGTGCGACGA 60.033 45.455 0.00 0.00 0.00 4.20
7066 7729 1.819632 GCCATCCGATCGCTTTGGT 60.820 57.895 22.23 0.87 0.00 3.67
7089 7752 1.208614 GACTACCGCGACGTTCAGT 59.791 57.895 8.23 0.00 0.00 3.41
7091 7754 2.174107 CGACTACCGCGACGTTCA 59.826 61.111 8.23 0.00 0.00 3.18
7097 7760 2.359107 ACCAGACGACTACCGCGA 60.359 61.111 8.23 0.00 43.32 5.87
7106 7769 1.338107 ACATGTCAAGGACCAGACGA 58.662 50.000 11.18 3.35 37.58 4.20
7108 7771 2.480419 CGAAACATGTCAAGGACCAGAC 59.520 50.000 0.00 9.50 35.37 3.51
7109 7772 2.549992 CCGAAACATGTCAAGGACCAGA 60.550 50.000 0.00 0.00 0.00 3.86
7119 7783 1.017387 GGATGGAGCCGAAACATGTC 58.983 55.000 0.00 0.00 0.00 3.06
7267 8026 0.036388 GTCGCCCTCACTGAATTGGA 60.036 55.000 0.00 0.00 0.00 3.53
7268 8027 1.361668 CGTCGCCCTCACTGAATTGG 61.362 60.000 0.00 0.00 0.00 3.16
7270 8029 0.389948 GTCGTCGCCCTCACTGAATT 60.390 55.000 0.00 0.00 0.00 2.17
7302 8062 3.263489 TCCGCCGACCATAAACAATAA 57.737 42.857 0.00 0.00 0.00 1.40
7308 8068 4.621832 GGTTCCGCCGACCATAAA 57.378 55.556 0.00 0.00 37.14 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.