Multiple sequence alignment - TraesCS5B01G406500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G406500 chr5B 100.000 2473 0 0 677 3149 582773187 582775659 0.000000e+00 4567.0
1 TraesCS5B01G406500 chr5B 100.000 460 0 0 1 460 582772511 582772970 0.000000e+00 850.0
2 TraesCS5B01G406500 chr5B 99.659 293 1 0 677 969 582772678 582772970 1.290000e-148 536.0
3 TraesCS5B01G406500 chr5B 99.659 293 1 0 168 460 582773187 582773479 1.290000e-148 536.0
4 TraesCS5B01G406500 chr5A 92.684 2146 79 24 679 2787 594770428 594772532 0.000000e+00 3022.0
5 TraesCS5B01G406500 chr5A 88.223 484 23 12 1 460 594770250 594770723 5.940000e-152 547.0
6 TraesCS5B01G406500 chr5A 88.776 294 20 7 2094 2386 486468300 486468019 6.460000e-92 348.0
7 TraesCS5B01G406500 chr5A 86.260 131 5 5 2423 2552 131302110 131301992 2.550000e-26 130.0
8 TraesCS5B01G406500 chr5D 95.518 1718 48 11 677 2391 475381785 475383476 0.000000e+00 2719.0
9 TraesCS5B01G406500 chr5D 93.548 465 12 5 1 460 475381613 475382064 0.000000e+00 676.0
10 TraesCS5B01G406500 chr5D 93.781 402 17 3 2428 2829 475383476 475383869 5.810000e-167 597.0
11 TraesCS5B01G406500 chr5D 79.612 206 28 8 2848 3042 475383971 475384173 5.480000e-28 135.0
12 TraesCS5B01G406500 chr5D 97.500 40 0 1 3085 3123 475384313 475384352 2.030000e-07 67.6
13 TraesCS5B01G406500 chr6A 87.708 301 23 4 2093 2386 217309505 217309798 3.890000e-89 339.0
14 TraesCS5B01G406500 chr6A 92.000 150 12 0 1250 1399 500083776 500083627 8.850000e-51 211.0
15 TraesCS5B01G406500 chr6A 86.550 171 19 1 2093 2263 407124940 407125106 5.360000e-43 185.0
16 TraesCS5B01G406500 chr6A 83.206 131 9 8 2423 2552 217309791 217309909 1.190000e-19 108.0
17 TraesCS5B01G406500 chr6A 89.157 83 4 4 2311 2393 407125397 407125474 7.190000e-17 99.0
18 TraesCS5B01G406500 chr6A 82.927 123 8 8 2431 2552 407125470 407125580 7.190000e-17 99.0
19 TraesCS5B01G406500 chr1A 87.372 293 24 7 2094 2386 119396887 119397166 1.090000e-84 324.0
20 TraesCS5B01G406500 chr1A 83.969 131 8 6 2423 2552 119397159 119397277 2.570000e-21 113.0
21 TraesCS5B01G406500 chr2A 91.176 170 10 4 2224 2393 60653047 60652883 3.160000e-55 226.0
22 TraesCS5B01G406500 chr2A 89.412 170 15 3 1230 1399 35975998 35976164 8.850000e-51 211.0
23 TraesCS5B01G406500 chr2A 87.379 103 5 3 2446 2548 60652876 60652782 9.230000e-21 111.0
24 TraesCS5B01G406500 chr6D 92.000 150 12 0 1250 1399 358326157 358326008 8.850000e-51 211.0
25 TraesCS5B01G406500 chr2D 89.412 170 15 2 1230 1399 32763253 32763419 8.850000e-51 211.0
26 TraesCS5B01G406500 chr2B 89.412 170 15 2 1230 1399 54440321 54440487 8.850000e-51 211.0
27 TraesCS5B01G406500 chr7D 86.517 178 24 0 1224 1401 174992588 174992765 2.480000e-46 196.0
28 TraesCS5B01G406500 chr7A 86.188 181 25 0 1221 1401 177136135 177136315 2.480000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G406500 chr5B 582772511 582775659 3148 False 1622.25 4567 99.8295 1 3149 4 chr5B.!!$F1 3148
1 TraesCS5B01G406500 chr5A 594770250 594772532 2282 False 1784.50 3022 90.4535 1 2787 2 chr5A.!!$F1 2786
2 TraesCS5B01G406500 chr5D 475381613 475384352 2739 False 838.92 2719 91.9918 1 3123 5 chr5D.!!$F1 3122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 367 0.033306 TTATAAACCGCCCCAACCCC 60.033 55.0 0.00 0.0 0.00 4.95 F
403 432 0.038801 GCAAAGCTCCTGAAAGCCAC 60.039 55.0 0.02 0.0 43.56 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 1990 3.446570 AAGGGTAGGACGACGCCG 61.447 66.667 0.00 0.00 42.50 6.46 R
2171 2224 3.712907 ATGTAACAGCCGGCCGGT 61.713 61.111 42.53 27.53 37.65 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.012046 ACACAGAGACAGACATTTGTCCATA 59.988 40.000 7.07 0.00 46.81 2.74
68 69 4.216042 TGTCCATAAACATGACAGTGCAAG 59.784 41.667 0.00 0.00 0.00 4.01
144 151 4.339814 CCACTCTACCTACATTCCTCAGAC 59.660 50.000 0.00 0.00 0.00 3.51
179 189 1.339929 GCTCCAACCCGACAACAAAAT 59.660 47.619 0.00 0.00 0.00 1.82
299 328 2.894387 GCGCTGGCTGGATCAGTC 60.894 66.667 0.00 0.00 36.52 3.51
300 329 2.202987 CGCTGGCTGGATCAGTCC 60.203 66.667 0.00 0.28 45.31 3.85
301 330 2.191641 GCTGGCTGGATCAGTCCC 59.808 66.667 0.00 0.00 44.41 4.46
302 331 2.914289 CTGGCTGGATCAGTCCCC 59.086 66.667 0.00 0.00 44.41 4.81
303 332 1.692042 CTGGCTGGATCAGTCCCCT 60.692 63.158 0.00 0.00 44.41 4.79
304 333 1.690633 TGGCTGGATCAGTCCCCTC 60.691 63.158 0.00 0.00 44.41 4.30
305 334 2.447714 GGCTGGATCAGTCCCCTCC 61.448 68.421 0.00 0.00 44.41 4.30
306 335 2.447714 GCTGGATCAGTCCCCTCCC 61.448 68.421 0.00 0.00 44.41 4.30
307 336 1.768077 CTGGATCAGTCCCCTCCCC 60.768 68.421 0.00 0.00 44.41 4.81
308 337 2.263099 CTGGATCAGTCCCCTCCCCT 62.263 65.000 0.00 0.00 44.41 4.79
309 338 1.460497 GGATCAGTCCCCTCCCCTC 60.460 68.421 0.00 0.00 38.69 4.30
310 339 1.460497 GATCAGTCCCCTCCCCTCC 60.460 68.421 0.00 0.00 0.00 4.30
311 340 2.974435 GATCAGTCCCCTCCCCTCCC 62.974 70.000 0.00 0.00 0.00 4.30
312 341 4.024984 CAGTCCCCTCCCCTCCCA 62.025 72.222 0.00 0.00 0.00 4.37
313 342 4.026357 AGTCCCCTCCCCTCCCAC 62.026 72.222 0.00 0.00 0.00 4.61
318 347 4.787280 CCTCCCCTCCCACGCTCT 62.787 72.222 0.00 0.00 0.00 4.09
319 348 2.685380 CTCCCCTCCCACGCTCTT 60.685 66.667 0.00 0.00 0.00 2.85
320 349 2.203938 TCCCCTCCCACGCTCTTT 60.204 61.111 0.00 0.00 0.00 2.52
321 350 0.976073 CTCCCCTCCCACGCTCTTTA 60.976 60.000 0.00 0.00 0.00 1.85
322 351 0.326238 TCCCCTCCCACGCTCTTTAT 60.326 55.000 0.00 0.00 0.00 1.40
323 352 1.062734 TCCCCTCCCACGCTCTTTATA 60.063 52.381 0.00 0.00 0.00 0.98
324 353 1.766496 CCCCTCCCACGCTCTTTATAA 59.234 52.381 0.00 0.00 0.00 0.98
325 354 2.171870 CCCCTCCCACGCTCTTTATAAA 59.828 50.000 0.00 0.00 0.00 1.40
326 355 3.203716 CCCTCCCACGCTCTTTATAAAC 58.796 50.000 0.00 0.00 0.00 2.01
327 356 3.203716 CCTCCCACGCTCTTTATAAACC 58.796 50.000 0.00 0.00 0.00 3.27
328 357 2.864343 CTCCCACGCTCTTTATAAACCG 59.136 50.000 0.00 0.84 0.00 4.44
329 358 1.329599 CCCACGCTCTTTATAAACCGC 59.670 52.381 0.00 0.00 0.00 5.68
330 359 1.329599 CCACGCTCTTTATAAACCGCC 59.670 52.381 0.00 0.00 0.00 6.13
331 360 1.329599 CACGCTCTTTATAAACCGCCC 59.670 52.381 0.00 0.00 0.00 6.13
332 361 0.942252 CGCTCTTTATAAACCGCCCC 59.058 55.000 0.00 0.00 0.00 5.80
333 362 1.744456 CGCTCTTTATAAACCGCCCCA 60.744 52.381 0.00 0.00 0.00 4.96
334 363 2.371306 GCTCTTTATAAACCGCCCCAA 58.629 47.619 0.00 0.00 0.00 4.12
335 364 2.098607 GCTCTTTATAAACCGCCCCAAC 59.901 50.000 0.00 0.00 0.00 3.77
336 365 2.686405 CTCTTTATAAACCGCCCCAACC 59.314 50.000 0.00 0.00 0.00 3.77
337 366 1.752498 CTTTATAAACCGCCCCAACCC 59.248 52.381 0.00 0.00 0.00 4.11
338 367 0.033306 TTATAAACCGCCCCAACCCC 60.033 55.000 0.00 0.00 0.00 4.95
339 368 1.212934 TATAAACCGCCCCAACCCCA 61.213 55.000 0.00 0.00 0.00 4.96
340 369 2.508407 ATAAACCGCCCCAACCCCAG 62.508 60.000 0.00 0.00 0.00 4.45
346 375 4.994756 CCCCAACCCCAGTGCCAC 62.995 72.222 0.00 0.00 0.00 5.01
347 376 3.902112 CCCAACCCCAGTGCCACT 61.902 66.667 0.00 0.00 0.00 4.00
348 377 2.598394 CCAACCCCAGTGCCACTG 60.598 66.667 18.02 18.02 45.53 3.66
349 378 3.297620 CAACCCCAGTGCCACTGC 61.298 66.667 19.49 0.00 44.63 4.40
350 379 4.603535 AACCCCAGTGCCACTGCC 62.604 66.667 19.49 0.00 44.63 4.85
367 396 4.631740 CCCACCCCACCCCCAAAC 62.632 72.222 0.00 0.00 0.00 2.93
368 397 4.631740 CCACCCCACCCCCAAACC 62.632 72.222 0.00 0.00 0.00 3.27
369 398 4.631740 CACCCCACCCCCAAACCC 62.632 72.222 0.00 0.00 0.00 4.11
373 402 3.610479 CCACCCCCAAACCCCCAT 61.610 66.667 0.00 0.00 0.00 4.00
374 403 2.284552 CACCCCCAAACCCCCATG 60.285 66.667 0.00 0.00 0.00 3.66
375 404 2.455532 ACCCCCAAACCCCCATGA 60.456 61.111 0.00 0.00 0.00 3.07
376 405 1.866508 ACCCCCAAACCCCCATGAT 60.867 57.895 0.00 0.00 0.00 2.45
377 406 1.075301 CCCCCAAACCCCCATGATC 60.075 63.158 0.00 0.00 0.00 2.92
378 407 1.593166 CCCCCAAACCCCCATGATCT 61.593 60.000 0.00 0.00 0.00 2.75
379 408 0.397535 CCCCAAACCCCCATGATCTG 60.398 60.000 0.00 0.00 0.00 2.90
380 409 0.630673 CCCAAACCCCCATGATCTGA 59.369 55.000 0.00 0.00 0.00 3.27
381 410 1.218704 CCCAAACCCCCATGATCTGAT 59.781 52.381 0.00 0.00 0.00 2.90
382 411 2.590821 CCAAACCCCCATGATCTGATC 58.409 52.381 10.72 10.72 0.00 2.92
383 412 2.590821 CAAACCCCCATGATCTGATCC 58.409 52.381 14.71 0.00 0.00 3.36
384 413 0.767375 AACCCCCATGATCTGATCCG 59.233 55.000 14.71 6.24 0.00 4.18
385 414 1.002868 CCCCCATGATCTGATCCGC 60.003 63.158 14.71 0.00 0.00 5.54
386 415 1.756665 CCCCATGATCTGATCCGCA 59.243 57.895 14.71 0.00 0.00 5.69
387 416 0.109153 CCCCATGATCTGATCCGCAA 59.891 55.000 14.71 0.00 0.00 4.85
388 417 1.477377 CCCCATGATCTGATCCGCAAA 60.477 52.381 14.71 0.00 0.00 3.68
389 418 1.878088 CCCATGATCTGATCCGCAAAG 59.122 52.381 14.71 0.00 0.00 2.77
390 419 1.266175 CCATGATCTGATCCGCAAAGC 59.734 52.381 14.71 0.00 0.00 3.51
391 420 2.219458 CATGATCTGATCCGCAAAGCT 58.781 47.619 14.71 0.00 0.00 3.74
392 421 1.945387 TGATCTGATCCGCAAAGCTC 58.055 50.000 14.71 0.00 0.00 4.09
393 422 1.224965 GATCTGATCCGCAAAGCTCC 58.775 55.000 6.37 0.00 0.00 4.70
394 423 0.835941 ATCTGATCCGCAAAGCTCCT 59.164 50.000 0.00 0.00 0.00 3.69
395 424 0.107993 TCTGATCCGCAAAGCTCCTG 60.108 55.000 0.00 0.00 0.00 3.86
396 425 0.107993 CTGATCCGCAAAGCTCCTGA 60.108 55.000 0.02 0.00 0.00 3.86
397 426 0.324614 TGATCCGCAAAGCTCCTGAA 59.675 50.000 0.02 0.00 0.00 3.02
398 427 1.271325 TGATCCGCAAAGCTCCTGAAA 60.271 47.619 0.02 0.00 0.00 2.69
399 428 1.399791 GATCCGCAAAGCTCCTGAAAG 59.600 52.381 0.02 0.00 0.00 2.62
400 429 1.211190 CCGCAAAGCTCCTGAAAGC 59.789 57.895 0.02 0.00 42.82 3.51
401 430 1.211190 CGCAAAGCTCCTGAAAGCC 59.789 57.895 0.02 0.00 43.56 4.35
402 431 1.518056 CGCAAAGCTCCTGAAAGCCA 61.518 55.000 0.02 0.00 43.56 4.75
403 432 0.038801 GCAAAGCTCCTGAAAGCCAC 60.039 55.000 0.02 0.00 43.56 5.01
404 433 0.600057 CAAAGCTCCTGAAAGCCACC 59.400 55.000 0.00 0.00 43.56 4.61
405 434 0.185901 AAAGCTCCTGAAAGCCACCA 59.814 50.000 0.00 0.00 43.56 4.17
406 435 0.538287 AAGCTCCTGAAAGCCACCAC 60.538 55.000 0.00 0.00 43.56 4.16
407 436 2.328099 GCTCCTGAAAGCCACCACG 61.328 63.158 0.00 0.00 36.22 4.94
408 437 2.281484 TCCTGAAAGCCACCACGC 60.281 61.111 0.00 0.00 0.00 5.34
409 438 3.365265 CCTGAAAGCCACCACGCC 61.365 66.667 0.00 0.00 0.00 5.68
410 439 2.594303 CTGAAAGCCACCACGCCA 60.594 61.111 0.00 0.00 0.00 5.69
411 440 2.904866 TGAAAGCCACCACGCCAC 60.905 61.111 0.00 0.00 0.00 5.01
412 441 3.670377 GAAAGCCACCACGCCACC 61.670 66.667 0.00 0.00 0.00 4.61
413 442 4.204028 AAAGCCACCACGCCACCT 62.204 61.111 0.00 0.00 0.00 4.00
414 443 3.731766 AAAGCCACCACGCCACCTT 62.732 57.895 0.00 0.00 0.00 3.50
415 444 3.731766 AAGCCACCACGCCACCTTT 62.732 57.895 0.00 0.00 0.00 3.11
416 445 3.977244 GCCACCACGCCACCTTTG 61.977 66.667 0.00 0.00 0.00 2.77
417 446 3.977244 CCACCACGCCACCTTTGC 61.977 66.667 0.00 0.00 0.00 3.68
418 447 2.906897 CACCACGCCACCTTTGCT 60.907 61.111 0.00 0.00 0.00 3.91
419 448 2.594592 ACCACGCCACCTTTGCTC 60.595 61.111 0.00 0.00 0.00 4.26
420 449 3.726517 CCACGCCACCTTTGCTCG 61.727 66.667 0.00 0.00 0.00 5.03
421 450 4.389576 CACGCCACCTTTGCTCGC 62.390 66.667 0.00 0.00 0.00 5.03
422 451 4.626081 ACGCCACCTTTGCTCGCT 62.626 61.111 0.00 0.00 0.00 4.93
423 452 3.793144 CGCCACCTTTGCTCGCTC 61.793 66.667 0.00 0.00 0.00 5.03
424 453 3.793144 GCCACCTTTGCTCGCTCG 61.793 66.667 0.00 0.00 0.00 5.03
425 454 3.793144 CCACCTTTGCTCGCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
426 455 3.793144 CACCTTTGCTCGCTCGCC 61.793 66.667 0.00 0.00 0.00 5.54
428 457 4.767255 CCTTTGCTCGCTCGCCCT 62.767 66.667 0.00 0.00 0.00 5.19
429 458 2.743928 CTTTGCTCGCTCGCCCTT 60.744 61.111 0.00 0.00 0.00 3.95
430 459 2.742372 TTTGCTCGCTCGCCCTTC 60.742 61.111 0.00 0.00 0.00 3.46
431 460 4.760047 TTGCTCGCTCGCCCTTCC 62.760 66.667 0.00 0.00 0.00 3.46
433 462 4.882396 GCTCGCTCGCCCTTCCTC 62.882 72.222 0.00 0.00 0.00 3.71
434 463 3.144193 CTCGCTCGCCCTTCCTCT 61.144 66.667 0.00 0.00 0.00 3.69
435 464 3.423162 CTCGCTCGCCCTTCCTCTG 62.423 68.421 0.00 0.00 0.00 3.35
437 466 3.780173 GCTCGCCCTTCCTCTGCT 61.780 66.667 0.00 0.00 0.00 4.24
438 467 2.498726 CTCGCCCTTCCTCTGCTC 59.501 66.667 0.00 0.00 0.00 4.26
439 468 3.077556 TCGCCCTTCCTCTGCTCC 61.078 66.667 0.00 0.00 0.00 4.70
440 469 3.393970 CGCCCTTCCTCTGCTCCA 61.394 66.667 0.00 0.00 0.00 3.86
441 470 2.959484 CGCCCTTCCTCTGCTCCAA 61.959 63.158 0.00 0.00 0.00 3.53
442 471 1.077858 GCCCTTCCTCTGCTCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
443 472 1.557269 GCCCTTCCTCTGCTCCAAGA 61.557 60.000 0.00 0.00 0.00 3.02
444 473 0.987294 CCCTTCCTCTGCTCCAAGAA 59.013 55.000 0.00 0.00 0.00 2.52
445 474 1.065564 CCCTTCCTCTGCTCCAAGAAG 60.066 57.143 0.00 0.00 34.94 2.85
446 475 1.678425 CCTTCCTCTGCTCCAAGAAGC 60.678 57.143 0.00 0.00 42.82 3.86
447 476 0.326264 TTCCTCTGCTCCAAGAAGCC 59.674 55.000 0.00 0.00 41.77 4.35
448 477 0.546267 TCCTCTGCTCCAAGAAGCCT 60.546 55.000 0.00 0.00 41.77 4.58
449 478 0.327591 CCTCTGCTCCAAGAAGCCTT 59.672 55.000 0.00 0.00 41.77 4.35
450 479 1.271817 CCTCTGCTCCAAGAAGCCTTT 60.272 52.381 0.00 0.00 41.77 3.11
451 480 2.512705 CTCTGCTCCAAGAAGCCTTTT 58.487 47.619 0.00 0.00 41.77 2.27
452 481 2.487372 CTCTGCTCCAAGAAGCCTTTTC 59.513 50.000 0.00 0.00 41.77 2.29
453 482 2.107204 TCTGCTCCAAGAAGCCTTTTCT 59.893 45.455 0.00 0.00 41.77 2.52
454 483 2.889678 CTGCTCCAAGAAGCCTTTTCTT 59.110 45.455 0.00 0.00 41.77 2.52
455 484 3.299503 TGCTCCAAGAAGCCTTTTCTTT 58.700 40.909 0.00 0.00 41.77 2.52
456 485 3.068590 TGCTCCAAGAAGCCTTTTCTTTG 59.931 43.478 0.00 0.00 41.77 2.77
457 486 3.319122 GCTCCAAGAAGCCTTTTCTTTGA 59.681 43.478 0.00 2.23 36.69 2.69
458 487 4.558296 GCTCCAAGAAGCCTTTTCTTTGAG 60.558 45.833 18.82 18.82 44.52 3.02
459 488 3.319122 TCCAAGAAGCCTTTTCTTTGAGC 59.681 43.478 0.00 0.00 36.69 4.26
699 728 5.923665 CCGACAACAAAATTGTACTCCTAC 58.076 41.667 0.00 0.00 41.31 3.18
700 729 5.699458 CCGACAACAAAATTGTACTCCTACT 59.301 40.000 0.00 0.00 41.31 2.57
701 730 6.869913 CCGACAACAAAATTGTACTCCTACTA 59.130 38.462 0.00 0.00 41.31 1.82
702 731 7.063074 CCGACAACAAAATTGTACTCCTACTAG 59.937 40.741 0.00 0.00 41.31 2.57
703 732 7.597743 CGACAACAAAATTGTACTCCTACTAGT 59.402 37.037 0.00 0.00 41.31 2.57
704 733 9.918630 GACAACAAAATTGTACTCCTACTAGTA 57.081 33.333 1.89 1.89 41.31 1.82
718 747 9.987726 ACTCCTACTAGTACAAGGTAAATTACT 57.012 33.333 9.53 0.00 0.00 2.24
740 769 6.903419 ACTACAAATCAAGACAAAGCTAAGC 58.097 36.000 0.00 0.00 0.00 3.09
741 770 5.126396 ACAAATCAAGACAAAGCTAAGCC 57.874 39.130 0.00 0.00 0.00 4.35
742 771 4.829492 ACAAATCAAGACAAAGCTAAGCCT 59.171 37.500 0.00 0.00 0.00 4.58
743 772 5.048434 ACAAATCAAGACAAAGCTAAGCCTC 60.048 40.000 0.00 0.00 0.00 4.70
744 773 4.566426 ATCAAGACAAAGCTAAGCCTCT 57.434 40.909 0.00 0.00 0.00 3.69
745 774 3.668447 TCAAGACAAAGCTAAGCCTCTG 58.332 45.455 0.00 0.00 0.00 3.35
746 775 3.324846 TCAAGACAAAGCTAAGCCTCTGA 59.675 43.478 0.00 0.00 0.00 3.27
747 776 3.608316 AGACAAAGCTAAGCCTCTGAG 57.392 47.619 0.00 0.00 0.00 3.35
748 777 2.235898 AGACAAAGCTAAGCCTCTGAGG 59.764 50.000 19.55 19.55 38.80 3.86
749 778 1.981495 ACAAAGCTAAGCCTCTGAGGT 59.019 47.619 23.92 8.71 37.80 3.85
750 779 2.027653 ACAAAGCTAAGCCTCTGAGGTC 60.028 50.000 23.92 16.06 37.80 3.85
751 780 2.235898 CAAAGCTAAGCCTCTGAGGTCT 59.764 50.000 23.92 17.90 37.80 3.85
752 781 1.484038 AGCTAAGCCTCTGAGGTCTG 58.516 55.000 23.92 13.06 37.80 3.51
753 782 1.006519 AGCTAAGCCTCTGAGGTCTGA 59.993 52.381 23.92 13.69 37.80 3.27
754 783 1.827969 GCTAAGCCTCTGAGGTCTGAA 59.172 52.381 23.92 12.35 37.80 3.02
755 784 2.418060 GCTAAGCCTCTGAGGTCTGAAC 60.418 54.545 23.92 7.08 37.80 3.18
756 785 1.722034 AAGCCTCTGAGGTCTGAACA 58.278 50.000 23.92 0.00 37.80 3.18
757 786 1.265236 AGCCTCTGAGGTCTGAACAG 58.735 55.000 23.92 0.00 37.80 3.16
758 787 1.203112 AGCCTCTGAGGTCTGAACAGA 60.203 52.381 23.92 0.00 37.80 3.41
762 791 3.229697 TCTGAGGTCTGAACAGAGACA 57.770 47.619 4.67 5.38 43.70 3.41
763 792 3.566351 TCTGAGGTCTGAACAGAGACAA 58.434 45.455 4.67 0.00 43.70 3.18
764 793 3.960755 TCTGAGGTCTGAACAGAGACAAA 59.039 43.478 4.67 0.00 43.70 2.83
765 794 4.038522 TCTGAGGTCTGAACAGAGACAAAG 59.961 45.833 4.67 4.23 43.70 2.77
766 795 3.070159 TGAGGTCTGAACAGAGACAAAGG 59.930 47.826 4.67 0.00 43.70 3.11
767 796 2.147150 GGTCTGAACAGAGACAAAGGC 58.853 52.381 4.67 0.00 43.70 4.35
768 797 2.485479 GGTCTGAACAGAGACAAAGGCA 60.485 50.000 4.67 0.00 43.70 4.75
769 798 2.545946 GTCTGAACAGAGACAAAGGCAC 59.454 50.000 4.67 0.00 41.84 5.01
770 799 2.170397 TCTGAACAGAGACAAAGGCACA 59.830 45.455 0.00 0.00 32.82 4.57
771 800 2.547211 CTGAACAGAGACAAAGGCACAG 59.453 50.000 0.00 0.00 0.00 3.66
772 801 2.170397 TGAACAGAGACAAAGGCACAGA 59.830 45.455 0.00 0.00 0.00 3.41
773 802 3.206150 GAACAGAGACAAAGGCACAGAA 58.794 45.455 0.00 0.00 0.00 3.02
774 803 3.281727 ACAGAGACAAAGGCACAGAAA 57.718 42.857 0.00 0.00 0.00 2.52
775 804 3.209410 ACAGAGACAAAGGCACAGAAAG 58.791 45.455 0.00 0.00 0.00 2.62
776 805 3.118261 ACAGAGACAAAGGCACAGAAAGA 60.118 43.478 0.00 0.00 0.00 2.52
777 806 3.879295 CAGAGACAAAGGCACAGAAAGAA 59.121 43.478 0.00 0.00 0.00 2.52
778 807 3.879892 AGAGACAAAGGCACAGAAAGAAC 59.120 43.478 0.00 0.00 0.00 3.01
779 808 2.952310 AGACAAAGGCACAGAAAGAACC 59.048 45.455 0.00 0.00 0.00 3.62
780 809 1.676006 ACAAAGGCACAGAAAGAACCG 59.324 47.619 0.00 0.00 0.00 4.44
781 810 0.668535 AAAGGCACAGAAAGAACCGC 59.331 50.000 0.00 0.00 0.00 5.68
782 811 0.179018 AAGGCACAGAAAGAACCGCT 60.179 50.000 0.00 0.00 0.00 5.52
783 812 0.685097 AGGCACAGAAAGAACCGCTA 59.315 50.000 0.00 0.00 0.00 4.26
784 813 1.071699 AGGCACAGAAAGAACCGCTAA 59.928 47.619 0.00 0.00 0.00 3.09
785 814 1.464997 GGCACAGAAAGAACCGCTAAG 59.535 52.381 0.00 0.00 0.00 2.18
786 815 1.135944 GCACAGAAAGAACCGCTAAGC 60.136 52.381 0.00 0.00 0.00 3.09
787 816 1.464997 CACAGAAAGAACCGCTAAGCC 59.535 52.381 0.00 0.00 0.00 4.35
788 817 1.087501 CAGAAAGAACCGCTAAGCCC 58.912 55.000 0.00 0.00 0.00 5.19
789 818 0.984995 AGAAAGAACCGCTAAGCCCT 59.015 50.000 0.00 0.00 0.00 5.19
790 819 2.093658 CAGAAAGAACCGCTAAGCCCTA 60.094 50.000 0.00 0.00 0.00 3.53
791 820 2.168728 AGAAAGAACCGCTAAGCCCTAG 59.831 50.000 0.00 0.00 0.00 3.02
797 826 2.280457 GCTAAGCCCTAGCGCTGG 60.280 66.667 22.90 18.68 43.64 4.85
808 837 2.894387 GCGCTGGCTGGATCAGTC 60.894 66.667 0.00 0.00 36.52 3.51
809 838 2.202987 CGCTGGCTGGATCAGTCC 60.203 66.667 0.00 0.28 45.31 3.85
810 839 2.191641 GCTGGCTGGATCAGTCCC 59.808 66.667 0.00 0.00 44.41 4.46
811 840 2.914289 CTGGCTGGATCAGTCCCC 59.086 66.667 0.00 0.00 44.41 4.81
812 841 1.692042 CTGGCTGGATCAGTCCCCT 60.692 63.158 0.00 0.00 44.41 4.79
973 1002 3.064900 AGCCTTTTCTTTGAGCTCGAT 57.935 42.857 9.64 0.00 0.00 3.59
974 1003 3.006247 AGCCTTTTCTTTGAGCTCGATC 58.994 45.455 9.64 0.00 0.00 3.69
976 1005 3.254060 CCTTTTCTTTGAGCTCGATCGA 58.746 45.455 18.32 18.32 0.00 3.59
977 1006 3.305629 CCTTTTCTTTGAGCTCGATCGAG 59.694 47.826 35.25 35.25 44.56 4.04
978 1007 3.577649 TTTCTTTGAGCTCGATCGAGT 57.422 42.857 37.59 26.97 43.70 4.18
980 1009 1.813178 TCTTTGAGCTCGATCGAGTGT 59.187 47.619 37.59 28.10 43.70 3.55
1143 1184 2.361357 ACGTCCTCCTCCACCTCG 60.361 66.667 0.00 0.00 0.00 4.63
1531 1572 3.415087 GCATGTCCTGGGCCTCCT 61.415 66.667 4.53 0.00 0.00 3.69
1745 1798 2.359850 GCCACCAATGCACCTCGA 60.360 61.111 0.00 0.00 0.00 4.04
1746 1799 2.690778 GCCACCAATGCACCTCGAC 61.691 63.158 0.00 0.00 0.00 4.20
1747 1800 1.003355 CCACCAATGCACCTCGACT 60.003 57.895 0.00 0.00 0.00 4.18
1748 1801 1.021390 CCACCAATGCACCTCGACTC 61.021 60.000 0.00 0.00 0.00 3.36
1749 1802 1.079819 ACCAATGCACCTCGACTCG 60.080 57.895 0.00 0.00 0.00 4.18
1750 1803 2.456119 CCAATGCACCTCGACTCGC 61.456 63.158 0.00 0.00 0.00 5.03
1751 1804 1.737735 CAATGCACCTCGACTCGCA 60.738 57.895 0.00 0.84 39.01 5.10
1752 1805 1.738099 AATGCACCTCGACTCGCAC 60.738 57.895 0.00 0.00 37.17 5.34
1753 1806 3.649277 ATGCACCTCGACTCGCACC 62.649 63.158 0.00 0.00 37.17 5.01
1754 1807 4.057428 GCACCTCGACTCGCACCT 62.057 66.667 0.00 0.00 0.00 4.00
1755 1808 2.179517 CACCTCGACTCGCACCTC 59.820 66.667 0.00 0.00 0.00 3.85
1756 1809 3.432588 ACCTCGACTCGCACCTCG 61.433 66.667 0.00 0.00 40.15 4.63
1811 1864 1.526917 ACCACAACCTGCTGTCAGC 60.527 57.895 18.32 18.32 42.82 4.26
1839 1892 4.436998 AAGCCGCCCTCGTCTTCG 62.437 66.667 0.00 0.00 26.10 3.79
1937 1990 4.073200 CCACCCGTACGACACCCC 62.073 72.222 18.76 0.00 0.00 4.95
2168 2221 4.353437 GACCTCGACAACGCCGGT 62.353 66.667 1.90 0.00 42.32 5.28
2284 2337 8.275632 GTGTTTTCCTTTTGTTAATCAATCAGC 58.724 33.333 0.00 0.00 35.84 4.26
2309 2362 2.049228 GGTGACGTGACGAGTAACTTG 58.951 52.381 13.70 0.00 0.00 3.16
2393 2448 7.286215 TGGTATAGTGGTATAGTCTTCAAGC 57.714 40.000 0.00 0.00 0.00 4.01
2429 2484 2.100749 GCAAATTATGGTGGGGTGTAGC 59.899 50.000 0.00 0.00 0.00 3.58
2518 2573 4.384547 GGTTACATTTCCATTTCGTGCAAC 59.615 41.667 0.00 0.00 0.00 4.17
2550 2605 7.900782 ACGTACTTATTTGTCTGCAAACTAT 57.099 32.000 0.00 0.00 45.99 2.12
2551 2606 8.319143 ACGTACTTATTTGTCTGCAAACTATT 57.681 30.769 0.00 0.00 45.99 1.73
2552 2607 9.426837 ACGTACTTATTTGTCTGCAAACTATTA 57.573 29.630 0.00 0.00 45.99 0.98
2736 2797 2.084610 TCGCTGATTCTTGTGTCTGG 57.915 50.000 0.00 0.00 0.00 3.86
2768 2829 0.249489 ATGTACTCCAATCGGCGCTC 60.249 55.000 7.64 0.00 0.00 5.03
2769 2830 1.591863 GTACTCCAATCGGCGCTCC 60.592 63.158 7.64 0.00 0.00 4.70
2804 2865 5.013704 TGTGTATGGGAAACATGGTAGAGTT 59.986 40.000 0.00 0.00 40.82 3.01
2806 2867 3.433306 TGGGAAACATGGTAGAGTTGG 57.567 47.619 0.00 0.00 0.00 3.77
2807 2868 2.714250 TGGGAAACATGGTAGAGTTGGT 59.286 45.455 0.00 0.00 0.00 3.67
2822 2883 7.968405 GGTAGAGTTGGTTATTGCTGTAAATTG 59.032 37.037 0.00 0.00 0.00 2.32
2829 2890 5.419471 GGTTATTGCTGTAAATTGTGGGGTA 59.581 40.000 0.00 0.00 0.00 3.69
2831 2892 7.364320 GGTTATTGCTGTAAATTGTGGGGTATT 60.364 37.037 0.00 0.00 0.00 1.89
2834 2895 5.268387 TGCTGTAAATTGTGGGGTATTCAT 58.732 37.500 0.00 0.00 0.00 2.57
2837 2898 6.350949 GCTGTAAATTGTGGGGTATTCATGTT 60.351 38.462 0.00 0.00 0.00 2.71
2838 2899 7.546250 TGTAAATTGTGGGGTATTCATGTTT 57.454 32.000 0.00 0.00 0.00 2.83
2839 2900 7.382110 TGTAAATTGTGGGGTATTCATGTTTG 58.618 34.615 0.00 0.00 0.00 2.93
2841 2902 5.659440 ATTGTGGGGTATTCATGTTTGTC 57.341 39.130 0.00 0.00 0.00 3.18
2842 2903 4.105754 TGTGGGGTATTCATGTTTGTCA 57.894 40.909 0.00 0.00 0.00 3.58
2843 2904 4.671831 TGTGGGGTATTCATGTTTGTCAT 58.328 39.130 0.00 0.00 37.22 3.06
2862 3006 7.360113 TGTCATGATATTTGGACTAGCACTA 57.640 36.000 0.00 0.00 0.00 2.74
2864 3008 7.874528 TGTCATGATATTTGGACTAGCACTATG 59.125 37.037 0.00 0.00 0.00 2.23
2872 3016 5.235850 TGGACTAGCACTATGGTTGAAAA 57.764 39.130 0.00 0.00 0.00 2.29
2873 3017 5.626142 TGGACTAGCACTATGGTTGAAAAA 58.374 37.500 0.00 0.00 0.00 1.94
2929 3074 2.706339 AAATCGAGCAGCCAGAGATT 57.294 45.000 0.00 0.00 33.50 2.40
2930 3075 2.706339 AATCGAGCAGCCAGAGATTT 57.294 45.000 0.00 0.00 0.00 2.17
2931 3076 2.237393 ATCGAGCAGCCAGAGATTTC 57.763 50.000 0.00 0.00 0.00 2.17
2932 3077 0.176680 TCGAGCAGCCAGAGATTTCC 59.823 55.000 0.00 0.00 0.00 3.13
2934 3079 0.813210 GAGCAGCCAGAGATTTCCGG 60.813 60.000 0.00 0.00 0.00 5.14
2935 3080 2.476320 GCAGCCAGAGATTTCCGGC 61.476 63.158 2.18 2.18 45.23 6.13
2937 3082 4.567318 GCCAGAGATTTCCGGCAT 57.433 55.556 5.63 0.00 44.25 4.40
2951 3097 0.539986 CGGCATGGTACCTTGGTACT 59.460 55.000 24.78 7.67 0.00 2.73
2956 3102 4.503296 GGCATGGTACCTTGGTACTATCTG 60.503 50.000 24.78 16.91 30.25 2.90
2988 3140 1.224075 CTGGCATAGATTCACCTGCG 58.776 55.000 0.00 0.00 35.47 5.18
2989 3141 0.541392 TGGCATAGATTCACCTGCGT 59.459 50.000 0.00 0.00 35.47 5.24
2993 3145 1.863454 CATAGATTCACCTGCGTGCTC 59.137 52.381 0.00 0.00 40.04 4.26
2999 3151 1.763968 TCACCTGCGTGCTCTACTAT 58.236 50.000 0.00 0.00 40.04 2.12
3002 3154 2.100197 ACCTGCGTGCTCTACTATTCA 58.900 47.619 0.00 0.00 0.00 2.57
3061 3322 9.658799 GACAATACATGCTTGTATCTATATGGT 57.341 33.333 21.61 7.89 46.10 3.55
3082 3343 7.589958 TGGTTAACAAAATCACAGTATTGGT 57.410 32.000 8.10 0.00 0.00 3.67
3083 3344 7.653647 TGGTTAACAAAATCACAGTATTGGTC 58.346 34.615 8.10 0.00 0.00 4.02
3129 3390 6.091123 GCTATTGCAAGCTTCTCAAATTTG 57.909 37.500 12.15 12.15 39.50 2.32
3130 3391 5.063060 GCTATTGCAAGCTTCTCAAATTTGG 59.937 40.000 17.90 9.01 39.50 3.28
3131 3392 3.389925 TGCAAGCTTCTCAAATTTGGG 57.610 42.857 17.90 15.16 0.00 4.12
3132 3393 2.071540 GCAAGCTTCTCAAATTTGGGC 58.928 47.619 17.90 15.52 0.00 5.36
3133 3394 2.548493 GCAAGCTTCTCAAATTTGGGCA 60.548 45.455 17.90 4.14 0.00 5.36
3134 3395 3.731089 CAAGCTTCTCAAATTTGGGCAA 58.269 40.909 17.90 9.86 0.00 4.52
3135 3396 4.128643 CAAGCTTCTCAAATTTGGGCAAA 58.871 39.130 17.90 5.28 34.46 3.68
3136 3397 4.628963 AGCTTCTCAAATTTGGGCAAAT 57.371 36.364 17.90 0.00 42.35 2.32
3148 3409 7.527568 AATTTGGGCAAATTTGACATGATTT 57.472 28.000 25.05 9.09 45.67 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.674068 TGTGTTTCTATATAGTGCCATGTTAAA 57.326 29.630 9.58 0.00 0.00 1.52
8 9 8.700973 TCTGTGTTTCTATATAGTGCCATGTTA 58.299 33.333 9.58 0.00 0.00 2.41
52 53 4.083110 GCATAGTCTTGCACTGTCATGTTT 60.083 41.667 0.00 0.00 42.31 2.83
68 69 2.024414 GAATGGTGGGGTTGCATAGTC 58.976 52.381 0.00 0.00 0.00 2.59
144 151 5.416952 GGGTTGGAGCATCTGGATATTATTG 59.583 44.000 0.00 0.00 33.73 1.90
205 218 8.504005 GCTTAGCTTTGTCTTGATTTGTAGTAA 58.496 33.333 0.00 0.00 0.00 2.24
208 221 6.150140 AGGCTTAGCTTTGTCTTGATTTGTAG 59.850 38.462 3.59 0.00 0.00 2.74
301 330 4.787280 AGAGCGTGGGAGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
302 331 0.976073 TAAAGAGCGTGGGAGGGGAG 60.976 60.000 0.00 0.00 0.00 4.30
303 332 0.326238 ATAAAGAGCGTGGGAGGGGA 60.326 55.000 0.00 0.00 0.00 4.81
304 333 1.420430 TATAAAGAGCGTGGGAGGGG 58.580 55.000 0.00 0.00 0.00 4.79
305 334 3.203716 GTTTATAAAGAGCGTGGGAGGG 58.796 50.000 0.00 0.00 0.00 4.30
306 335 3.203716 GGTTTATAAAGAGCGTGGGAGG 58.796 50.000 0.00 0.00 0.00 4.30
307 336 2.864343 CGGTTTATAAAGAGCGTGGGAG 59.136 50.000 0.00 0.00 32.62 4.30
308 337 2.896168 CGGTTTATAAAGAGCGTGGGA 58.104 47.619 0.00 0.00 32.62 4.37
309 338 1.329599 GCGGTTTATAAAGAGCGTGGG 59.670 52.381 9.69 0.00 38.84 4.61
310 339 1.329599 GGCGGTTTATAAAGAGCGTGG 59.670 52.381 14.78 0.00 38.84 4.94
311 340 1.329599 GGGCGGTTTATAAAGAGCGTG 59.670 52.381 14.78 0.00 38.84 5.34
312 341 1.660167 GGGCGGTTTATAAAGAGCGT 58.340 50.000 14.78 0.00 38.84 5.07
313 342 0.942252 GGGGCGGTTTATAAAGAGCG 59.058 55.000 14.78 10.32 39.54 5.03
314 343 2.047002 TGGGGCGGTTTATAAAGAGC 57.953 50.000 13.53 13.53 0.00 4.09
315 344 2.686405 GGTTGGGGCGGTTTATAAAGAG 59.314 50.000 0.00 0.00 0.00 2.85
316 345 2.621147 GGGTTGGGGCGGTTTATAAAGA 60.621 50.000 0.00 0.00 0.00 2.52
317 346 1.752498 GGGTTGGGGCGGTTTATAAAG 59.248 52.381 0.00 0.00 0.00 1.85
318 347 1.619160 GGGGTTGGGGCGGTTTATAAA 60.619 52.381 0.00 0.00 0.00 1.40
319 348 0.033306 GGGGTTGGGGCGGTTTATAA 60.033 55.000 0.00 0.00 0.00 0.98
320 349 1.212934 TGGGGTTGGGGCGGTTTATA 61.213 55.000 0.00 0.00 0.00 0.98
321 350 2.361375 GGGGTTGGGGCGGTTTAT 59.639 61.111 0.00 0.00 0.00 1.40
322 351 3.183731 TGGGGTTGGGGCGGTTTA 61.184 61.111 0.00 0.00 0.00 2.01
323 352 4.614036 CTGGGGTTGGGGCGGTTT 62.614 66.667 0.00 0.00 0.00 3.27
329 358 4.994756 GTGGCACTGGGGTTGGGG 62.995 72.222 11.13 0.00 0.00 4.96
330 359 3.902112 AGTGGCACTGGGGTTGGG 61.902 66.667 21.37 0.00 0.00 4.12
331 360 2.598394 CAGTGGCACTGGGGTTGG 60.598 66.667 34.59 11.80 42.35 3.77
332 361 3.297620 GCAGTGGCACTGGGGTTG 61.298 66.667 39.74 21.16 46.01 3.77
333 362 4.603535 GGCAGTGGCACTGGGGTT 62.604 66.667 39.74 9.39 46.01 4.11
350 379 4.631740 GTTTGGGGGTGGGGTGGG 62.632 72.222 0.00 0.00 0.00 4.61
351 380 4.631740 GGTTTGGGGGTGGGGTGG 62.632 72.222 0.00 0.00 0.00 4.61
352 381 4.631740 GGGTTTGGGGGTGGGGTG 62.632 72.222 0.00 0.00 0.00 4.61
356 385 3.610479 ATGGGGGTTTGGGGGTGG 61.610 66.667 0.00 0.00 0.00 4.61
357 386 2.180190 ATCATGGGGGTTTGGGGGTG 62.180 60.000 0.00 0.00 0.00 4.61
358 387 1.866508 ATCATGGGGGTTTGGGGGT 60.867 57.895 0.00 0.00 0.00 4.95
359 388 1.075301 GATCATGGGGGTTTGGGGG 60.075 63.158 0.00 0.00 0.00 5.40
360 389 0.397535 CAGATCATGGGGGTTTGGGG 60.398 60.000 0.00 0.00 0.00 4.96
361 390 0.630673 TCAGATCATGGGGGTTTGGG 59.369 55.000 0.00 0.00 0.00 4.12
362 391 2.590821 GATCAGATCATGGGGGTTTGG 58.409 52.381 5.44 0.00 0.00 3.28
363 392 2.590821 GGATCAGATCATGGGGGTTTG 58.409 52.381 12.66 0.00 0.00 2.93
364 393 1.143684 CGGATCAGATCATGGGGGTTT 59.856 52.381 12.66 0.00 0.00 3.27
365 394 0.767375 CGGATCAGATCATGGGGGTT 59.233 55.000 12.66 0.00 0.00 4.11
366 395 1.772819 GCGGATCAGATCATGGGGGT 61.773 60.000 12.66 0.00 0.00 4.95
367 396 1.002868 GCGGATCAGATCATGGGGG 60.003 63.158 12.66 0.00 0.00 5.40
368 397 0.109153 TTGCGGATCAGATCATGGGG 59.891 55.000 12.66 0.00 0.00 4.96
369 398 1.878088 CTTTGCGGATCAGATCATGGG 59.122 52.381 12.66 0.00 0.00 4.00
370 399 1.266175 GCTTTGCGGATCAGATCATGG 59.734 52.381 12.66 2.29 0.00 3.66
371 400 2.219458 AGCTTTGCGGATCAGATCATG 58.781 47.619 12.66 5.25 0.00 3.07
372 401 2.492012 GAGCTTTGCGGATCAGATCAT 58.508 47.619 12.66 0.00 0.00 2.45
373 402 1.473965 GGAGCTTTGCGGATCAGATCA 60.474 52.381 12.66 0.00 0.00 2.92
374 403 1.202627 AGGAGCTTTGCGGATCAGATC 60.203 52.381 1.18 1.18 0.00 2.75
375 404 0.835941 AGGAGCTTTGCGGATCAGAT 59.164 50.000 0.00 0.00 0.00 2.90
376 405 0.107993 CAGGAGCTTTGCGGATCAGA 60.108 55.000 0.00 0.00 0.00 3.27
377 406 0.107993 TCAGGAGCTTTGCGGATCAG 60.108 55.000 0.00 0.00 0.00 2.90
378 407 0.324614 TTCAGGAGCTTTGCGGATCA 59.675 50.000 0.00 0.00 0.00 2.92
379 408 1.399791 CTTTCAGGAGCTTTGCGGATC 59.600 52.381 0.00 0.00 0.00 3.36
380 409 1.457346 CTTTCAGGAGCTTTGCGGAT 58.543 50.000 0.00 0.00 0.00 4.18
381 410 1.237285 GCTTTCAGGAGCTTTGCGGA 61.237 55.000 0.00 0.00 39.57 5.54
382 411 1.211190 GCTTTCAGGAGCTTTGCGG 59.789 57.895 0.00 0.00 39.57 5.69
383 412 1.211190 GGCTTTCAGGAGCTTTGCG 59.789 57.895 0.00 0.00 42.32 4.85
384 413 0.038801 GTGGCTTTCAGGAGCTTTGC 60.039 55.000 0.00 0.00 42.32 3.68
385 414 0.600057 GGTGGCTTTCAGGAGCTTTG 59.400 55.000 0.00 0.00 42.32 2.77
386 415 0.185901 TGGTGGCTTTCAGGAGCTTT 59.814 50.000 0.00 0.00 42.32 3.51
387 416 0.538287 GTGGTGGCTTTCAGGAGCTT 60.538 55.000 0.00 0.00 42.32 3.74
388 417 1.073897 GTGGTGGCTTTCAGGAGCT 59.926 57.895 0.00 0.00 42.32 4.09
389 418 2.328099 CGTGGTGGCTTTCAGGAGC 61.328 63.158 0.00 0.00 41.96 4.70
390 419 2.328099 GCGTGGTGGCTTTCAGGAG 61.328 63.158 0.00 0.00 0.00 3.69
391 420 2.281484 GCGTGGTGGCTTTCAGGA 60.281 61.111 0.00 0.00 0.00 3.86
392 421 3.365265 GGCGTGGTGGCTTTCAGG 61.365 66.667 0.00 0.00 40.72 3.86
393 422 2.594303 TGGCGTGGTGGCTTTCAG 60.594 61.111 0.00 0.00 45.14 3.02
394 423 2.904866 GTGGCGTGGTGGCTTTCA 60.905 61.111 0.00 0.00 45.14 2.69
395 424 3.670377 GGTGGCGTGGTGGCTTTC 61.670 66.667 0.00 0.00 45.14 2.62
396 425 3.731766 AAGGTGGCGTGGTGGCTTT 62.732 57.895 0.00 0.00 45.14 3.51
397 426 3.731766 AAAGGTGGCGTGGTGGCTT 62.732 57.895 0.00 0.00 45.14 4.35
398 427 4.204028 AAAGGTGGCGTGGTGGCT 62.204 61.111 0.00 0.00 45.14 4.75
399 428 3.977244 CAAAGGTGGCGTGGTGGC 61.977 66.667 0.00 0.00 45.12 5.01
400 429 3.977244 GCAAAGGTGGCGTGGTGG 61.977 66.667 0.00 0.00 0.00 4.61
401 430 2.906897 AGCAAAGGTGGCGTGGTG 60.907 61.111 0.00 0.00 36.08 4.17
402 431 2.594592 GAGCAAAGGTGGCGTGGT 60.595 61.111 0.00 0.00 36.08 4.16
403 432 3.726517 CGAGCAAAGGTGGCGTGG 61.727 66.667 0.00 0.00 36.08 4.94
404 433 4.389576 GCGAGCAAAGGTGGCGTG 62.390 66.667 0.00 0.00 36.08 5.34
405 434 4.626081 AGCGAGCAAAGGTGGCGT 62.626 61.111 0.00 0.00 39.57 5.68
406 435 3.793144 GAGCGAGCAAAGGTGGCG 61.793 66.667 0.00 0.00 39.57 5.69
407 436 3.793144 CGAGCGAGCAAAGGTGGC 61.793 66.667 0.00 0.00 35.14 5.01
408 437 3.793144 GCGAGCGAGCAAAGGTGG 61.793 66.667 0.00 0.00 37.05 4.61
409 438 3.793144 GGCGAGCGAGCAAAGGTG 61.793 66.667 8.59 0.00 39.27 4.00
411 440 4.767255 AGGGCGAGCGAGCAAAGG 62.767 66.667 8.59 0.00 39.27 3.11
412 441 2.743928 AAGGGCGAGCGAGCAAAG 60.744 61.111 8.59 0.00 39.27 2.77
413 442 2.742372 GAAGGGCGAGCGAGCAAA 60.742 61.111 8.59 0.00 39.27 3.68
414 443 4.760047 GGAAGGGCGAGCGAGCAA 62.760 66.667 8.59 0.00 39.27 3.91
416 445 4.882396 GAGGAAGGGCGAGCGAGC 62.882 72.222 0.00 0.00 0.00 5.03
417 446 3.144193 AGAGGAAGGGCGAGCGAG 61.144 66.667 0.00 0.00 0.00 5.03
418 447 3.452786 CAGAGGAAGGGCGAGCGA 61.453 66.667 0.00 0.00 0.00 4.93
420 449 3.731653 GAGCAGAGGAAGGGCGAGC 62.732 68.421 0.00 0.00 0.00 5.03
421 450 2.498726 GAGCAGAGGAAGGGCGAG 59.501 66.667 0.00 0.00 0.00 5.03
422 451 3.077556 GGAGCAGAGGAAGGGCGA 61.078 66.667 0.00 0.00 0.00 5.54
423 452 2.866085 CTTGGAGCAGAGGAAGGGCG 62.866 65.000 0.00 0.00 0.00 6.13
424 453 1.077858 CTTGGAGCAGAGGAAGGGC 60.078 63.158 0.00 0.00 0.00 5.19
425 454 0.987294 TTCTTGGAGCAGAGGAAGGG 59.013 55.000 0.00 0.00 0.00 3.95
426 455 1.678425 GCTTCTTGGAGCAGAGGAAGG 60.678 57.143 0.00 0.00 42.25 3.46
427 456 1.678425 GGCTTCTTGGAGCAGAGGAAG 60.678 57.143 3.11 0.00 44.49 3.46
428 457 0.326264 GGCTTCTTGGAGCAGAGGAA 59.674 55.000 3.11 0.00 44.49 3.36
429 458 0.546267 AGGCTTCTTGGAGCAGAGGA 60.546 55.000 3.11 0.00 44.49 3.71
430 459 0.327591 AAGGCTTCTTGGAGCAGAGG 59.672 55.000 3.11 0.00 44.49 3.69
431 460 2.197283 AAAGGCTTCTTGGAGCAGAG 57.803 50.000 0.00 0.00 44.49 3.35
432 461 2.107204 AGAAAAGGCTTCTTGGAGCAGA 59.893 45.455 0.00 0.00 44.49 4.26
433 462 2.512705 AGAAAAGGCTTCTTGGAGCAG 58.487 47.619 0.00 0.00 44.49 4.24
434 463 2.664402 AGAAAAGGCTTCTTGGAGCA 57.336 45.000 0.00 0.00 44.49 4.26
435 464 3.319122 TCAAAGAAAAGGCTTCTTGGAGC 59.681 43.478 0.00 0.00 38.62 4.70
436 465 5.118642 CTCAAAGAAAAGGCTTCTTGGAG 57.881 43.478 15.57 15.57 45.07 3.86
437 466 3.319122 GCTCAAAGAAAAGGCTTCTTGGA 59.681 43.478 0.00 2.92 38.62 3.53
438 467 3.646946 GCTCAAAGAAAAGGCTTCTTGG 58.353 45.455 0.00 0.00 38.62 3.61
676 705 5.699458 AGTAGGAGTACAATTTTGTTGTCGG 59.301 40.000 0.63 0.00 42.35 4.79
677 706 6.780706 AGTAGGAGTACAATTTTGTTGTCG 57.219 37.500 0.63 0.00 42.35 4.35
678 707 8.828688 ACTAGTAGGAGTACAATTTTGTTGTC 57.171 34.615 0.63 0.00 42.35 3.18
692 721 9.987726 AGTAATTTACCTTGTACTAGTAGGAGT 57.012 33.333 15.74 8.20 33.21 3.85
714 743 8.504005 GCTTAGCTTTGTCTTGATTTGTAGTAA 58.496 33.333 0.00 0.00 0.00 2.24
715 744 7.119262 GGCTTAGCTTTGTCTTGATTTGTAGTA 59.881 37.037 3.59 0.00 0.00 1.82
716 745 6.072452 GGCTTAGCTTTGTCTTGATTTGTAGT 60.072 38.462 3.59 0.00 0.00 2.73
717 746 6.150140 AGGCTTAGCTTTGTCTTGATTTGTAG 59.850 38.462 3.59 0.00 0.00 2.74
718 747 6.003950 AGGCTTAGCTTTGTCTTGATTTGTA 58.996 36.000 3.59 0.00 0.00 2.41
719 748 4.829492 AGGCTTAGCTTTGTCTTGATTTGT 59.171 37.500 3.59 0.00 0.00 2.83
720 749 5.182760 AGAGGCTTAGCTTTGTCTTGATTTG 59.817 40.000 3.59 0.00 0.00 2.32
721 750 5.182760 CAGAGGCTTAGCTTTGTCTTGATTT 59.817 40.000 3.59 0.00 0.00 2.17
722 751 4.699257 CAGAGGCTTAGCTTTGTCTTGATT 59.301 41.667 3.59 0.00 0.00 2.57
723 752 4.019860 TCAGAGGCTTAGCTTTGTCTTGAT 60.020 41.667 3.59 0.00 0.00 2.57
724 753 3.324846 TCAGAGGCTTAGCTTTGTCTTGA 59.675 43.478 3.59 0.00 0.00 3.02
725 754 3.668447 TCAGAGGCTTAGCTTTGTCTTG 58.332 45.455 3.59 0.00 0.00 3.02
726 755 3.307339 CCTCAGAGGCTTAGCTTTGTCTT 60.307 47.826 2.60 0.00 0.00 3.01
727 756 2.235898 CCTCAGAGGCTTAGCTTTGTCT 59.764 50.000 2.60 0.00 0.00 3.41
728 757 2.027653 ACCTCAGAGGCTTAGCTTTGTC 60.028 50.000 17.31 0.00 39.63 3.18
729 758 1.981495 ACCTCAGAGGCTTAGCTTTGT 59.019 47.619 17.31 0.00 39.63 2.83
730 759 2.235898 AGACCTCAGAGGCTTAGCTTTG 59.764 50.000 17.31 0.62 39.63 2.77
731 760 2.235898 CAGACCTCAGAGGCTTAGCTTT 59.764 50.000 17.31 0.00 39.63 3.51
732 761 1.830477 CAGACCTCAGAGGCTTAGCTT 59.170 52.381 17.31 0.00 39.63 3.74
733 762 1.006519 TCAGACCTCAGAGGCTTAGCT 59.993 52.381 17.31 3.65 39.63 3.32
734 763 1.479709 TCAGACCTCAGAGGCTTAGC 58.520 55.000 17.31 0.00 39.63 3.09
735 764 2.828520 TGTTCAGACCTCAGAGGCTTAG 59.171 50.000 17.31 4.49 39.63 2.18
736 765 2.828520 CTGTTCAGACCTCAGAGGCTTA 59.171 50.000 17.31 3.71 39.63 3.09
737 766 1.622811 CTGTTCAGACCTCAGAGGCTT 59.377 52.381 17.31 1.58 39.63 4.35
738 767 1.203112 TCTGTTCAGACCTCAGAGGCT 60.203 52.381 17.31 11.66 39.63 4.58
739 768 1.204467 CTCTGTTCAGACCTCAGAGGC 59.796 57.143 17.31 9.46 46.35 4.70
742 771 3.229697 TGTCTCTGTTCAGACCTCAGA 57.770 47.619 0.00 0.00 42.04 3.27
743 772 4.305769 CTTTGTCTCTGTTCAGACCTCAG 58.694 47.826 0.00 0.00 42.04 3.35
744 773 3.070159 CCTTTGTCTCTGTTCAGACCTCA 59.930 47.826 0.00 0.00 42.04 3.86
745 774 3.658709 CCTTTGTCTCTGTTCAGACCTC 58.341 50.000 0.00 0.00 42.04 3.85
746 775 2.224402 GCCTTTGTCTCTGTTCAGACCT 60.224 50.000 0.00 0.00 42.04 3.85
747 776 2.147150 GCCTTTGTCTCTGTTCAGACC 58.853 52.381 0.00 0.00 42.04 3.85
748 777 2.545946 GTGCCTTTGTCTCTGTTCAGAC 59.454 50.000 0.00 0.00 42.90 3.51
749 778 2.170397 TGTGCCTTTGTCTCTGTTCAGA 59.830 45.455 2.49 2.49 0.00 3.27
750 779 2.547211 CTGTGCCTTTGTCTCTGTTCAG 59.453 50.000 0.00 0.00 0.00 3.02
751 780 2.170397 TCTGTGCCTTTGTCTCTGTTCA 59.830 45.455 0.00 0.00 0.00 3.18
752 781 2.838736 TCTGTGCCTTTGTCTCTGTTC 58.161 47.619 0.00 0.00 0.00 3.18
753 782 3.281727 TTCTGTGCCTTTGTCTCTGTT 57.718 42.857 0.00 0.00 0.00 3.16
754 783 3.118261 TCTTTCTGTGCCTTTGTCTCTGT 60.118 43.478 0.00 0.00 0.00 3.41
755 784 3.470709 TCTTTCTGTGCCTTTGTCTCTG 58.529 45.455 0.00 0.00 0.00 3.35
756 785 3.845781 TCTTTCTGTGCCTTTGTCTCT 57.154 42.857 0.00 0.00 0.00 3.10
757 786 3.003793 GGTTCTTTCTGTGCCTTTGTCTC 59.996 47.826 0.00 0.00 0.00 3.36
758 787 2.952310 GGTTCTTTCTGTGCCTTTGTCT 59.048 45.455 0.00 0.00 0.00 3.41
759 788 2.287009 CGGTTCTTTCTGTGCCTTTGTC 60.287 50.000 0.00 0.00 0.00 3.18
760 789 1.676006 CGGTTCTTTCTGTGCCTTTGT 59.324 47.619 0.00 0.00 0.00 2.83
761 790 1.600413 GCGGTTCTTTCTGTGCCTTTG 60.600 52.381 0.00 0.00 0.00 2.77
762 791 0.668535 GCGGTTCTTTCTGTGCCTTT 59.331 50.000 0.00 0.00 0.00 3.11
763 792 0.179018 AGCGGTTCTTTCTGTGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
764 793 0.685097 TAGCGGTTCTTTCTGTGCCT 59.315 50.000 0.00 0.00 0.00 4.75
765 794 1.464997 CTTAGCGGTTCTTTCTGTGCC 59.535 52.381 0.00 0.00 0.00 5.01
766 795 1.135944 GCTTAGCGGTTCTTTCTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
767 796 1.464997 GGCTTAGCGGTTCTTTCTGTG 59.535 52.381 0.00 0.00 0.00 3.66
768 797 1.610886 GGGCTTAGCGGTTCTTTCTGT 60.611 52.381 0.00 0.00 0.00 3.41
769 798 1.087501 GGGCTTAGCGGTTCTTTCTG 58.912 55.000 0.00 0.00 0.00 3.02
770 799 0.984995 AGGGCTTAGCGGTTCTTTCT 59.015 50.000 0.00 0.00 0.00 2.52
771 800 2.552031 CTAGGGCTTAGCGGTTCTTTC 58.448 52.381 0.00 0.00 0.00 2.62
772 801 1.407025 GCTAGGGCTTAGCGGTTCTTT 60.407 52.381 13.13 0.00 44.90 2.52
773 802 0.178301 GCTAGGGCTTAGCGGTTCTT 59.822 55.000 13.13 0.00 44.90 2.52
774 803 1.823976 GCTAGGGCTTAGCGGTTCT 59.176 57.895 13.13 0.00 44.90 3.01
775 804 4.440181 GCTAGGGCTTAGCGGTTC 57.560 61.111 13.13 0.00 44.90 3.62
781 810 2.280457 GCCAGCGCTAGGGCTTAG 60.280 66.667 29.91 23.84 46.74 2.18
786 815 3.527775 GATCCAGCCAGCGCTAGGG 62.528 68.421 22.05 16.71 46.25 3.53
787 816 2.030262 GATCCAGCCAGCGCTAGG 59.970 66.667 10.99 15.68 46.25 3.02
788 817 1.300775 CTGATCCAGCCAGCGCTAG 60.301 63.158 10.99 3.03 46.25 3.42
789 818 2.021068 GACTGATCCAGCCAGCGCTA 62.021 60.000 10.99 0.00 46.25 4.26
791 820 2.894387 GACTGATCCAGCCAGCGC 60.894 66.667 0.00 0.00 34.37 5.92
792 821 2.202987 GGACTGATCCAGCCAGCG 60.203 66.667 0.00 0.00 45.47 5.18
800 829 1.460497 GAGGGGAGGGGACTGATCC 60.460 68.421 0.00 0.00 44.43 3.36
801 830 1.460497 GGAGGGGAGGGGACTGATC 60.460 68.421 0.00 0.00 44.43 2.92
802 831 2.706071 GGAGGGGAGGGGACTGAT 59.294 66.667 0.00 0.00 44.43 2.90
803 832 3.695825 GGGAGGGGAGGGGACTGA 61.696 72.222 0.00 0.00 44.43 3.41
804 833 4.024984 TGGGAGGGGAGGGGACTG 62.025 72.222 0.00 0.00 44.43 3.51
810 839 4.787280 AGAGCGTGGGAGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
811 840 0.976073 TAAAGAGCGTGGGAGGGGAG 60.976 60.000 0.00 0.00 0.00 4.30
812 841 0.326238 ATAAAGAGCGTGGGAGGGGA 60.326 55.000 0.00 0.00 0.00 4.81
868 897 1.075301 GATCATGGGGGTTTGGGGG 60.075 63.158 0.00 0.00 0.00 5.40
869 898 0.397535 CAGATCATGGGGGTTTGGGG 60.398 60.000 0.00 0.00 0.00 4.96
870 899 0.630673 TCAGATCATGGGGGTTTGGG 59.369 55.000 0.00 0.00 0.00 4.12
871 900 2.590821 GATCAGATCATGGGGGTTTGG 58.409 52.381 5.44 0.00 0.00 3.28
872 901 2.590821 GGATCAGATCATGGGGGTTTG 58.409 52.381 12.66 0.00 0.00 2.93
976 1005 2.032681 GGAGGGCAAGCGAACACT 59.967 61.111 0.00 0.00 0.00 3.55
977 1006 1.648467 GATGGAGGGCAAGCGAACAC 61.648 60.000 0.00 0.00 0.00 3.32
978 1007 1.377202 GATGGAGGGCAAGCGAACA 60.377 57.895 0.00 0.00 0.00 3.18
980 1009 2.125147 CGATGGAGGGCAAGCGAA 60.125 61.111 0.00 0.00 0.00 4.70
1059 1100 2.970324 TGGTGGTTCGCAGCGTTC 60.970 61.111 15.93 8.96 0.00 3.95
1065 1106 4.980805 GAGCCGTGGTGGTTCGCA 62.981 66.667 0.00 0.00 38.28 5.10
1094 1135 4.172512 AGGAGATGGGCTGCAGCG 62.173 66.667 31.19 0.00 43.26 5.18
1620 1661 4.365111 TGCCCCATGGTGTCCAGC 62.365 66.667 11.73 4.22 36.75 4.85
1745 1798 4.457496 CCATGCCGAGGTGCGAGT 62.457 66.667 0.00 0.00 44.57 4.18
1920 1973 4.073200 GGGGTGTCGTACGGGTGG 62.073 72.222 16.52 0.00 0.00 4.61
1937 1990 3.446570 AAGGGTAGGACGACGCCG 61.447 66.667 0.00 0.00 42.50 6.46
2018 2071 4.796495 GGTCCATCCCCACGGTGC 62.796 72.222 1.68 0.00 0.00 5.01
2171 2224 3.712907 ATGTAACAGCCGGCCGGT 61.713 61.111 42.53 27.53 37.65 5.28
2309 2362 6.772360 AGCTACTAAGTAGACAGTAAACCC 57.228 41.667 0.00 0.00 38.29 4.11
2403 2458 2.313342 ACCCCACCATAATTTGCCAGTA 59.687 45.455 0.00 0.00 0.00 2.74
2518 2573 5.575606 CAGACAAATAAGTACGTACACCAGG 59.424 44.000 26.55 13.59 0.00 4.45
2550 2605 5.633655 TTGGGACCAAAGTGAAGTAGTAA 57.366 39.130 0.32 0.00 32.44 2.24
2551 2606 5.633655 TTTGGGACCAAAGTGAAGTAGTA 57.366 39.130 12.27 0.00 40.51 1.82
2552 2607 4.513406 TTTGGGACCAAAGTGAAGTAGT 57.487 40.909 12.27 0.00 40.51 2.73
2736 2797 4.507710 TGGAGTACATGCTGTCTGATTTC 58.492 43.478 0.00 0.00 0.00 2.17
2768 2829 1.724623 CCATACACAAACAGTCGTCGG 59.275 52.381 0.00 0.00 0.00 4.79
2769 2830 1.724623 CCCATACACAAACAGTCGTCG 59.275 52.381 0.00 0.00 0.00 5.12
2772 2833 3.562141 TGTTTCCCATACACAAACAGTCG 59.438 43.478 0.00 0.00 35.57 4.18
2804 2865 4.221703 CCCCACAATTTACAGCAATAACCA 59.778 41.667 0.00 0.00 0.00 3.67
2806 2867 5.400066 ACCCCACAATTTACAGCAATAAC 57.600 39.130 0.00 0.00 0.00 1.89
2807 2868 7.397476 TGAATACCCCACAATTTACAGCAATAA 59.603 33.333 0.00 0.00 0.00 1.40
2834 2895 6.883756 TGCTAGTCCAAATATCATGACAAACA 59.116 34.615 0.00 0.00 0.00 2.83
2837 2898 6.653020 AGTGCTAGTCCAAATATCATGACAA 58.347 36.000 0.00 0.00 0.00 3.18
2838 2899 6.239217 AGTGCTAGTCCAAATATCATGACA 57.761 37.500 0.00 0.00 0.00 3.58
2839 2900 7.332926 CCATAGTGCTAGTCCAAATATCATGAC 59.667 40.741 0.00 0.00 0.00 3.06
2841 2902 7.164122 ACCATAGTGCTAGTCCAAATATCATG 58.836 38.462 0.00 0.00 0.00 3.07
2842 2903 7.321717 ACCATAGTGCTAGTCCAAATATCAT 57.678 36.000 0.00 0.00 0.00 2.45
2843 2904 6.747414 ACCATAGTGCTAGTCCAAATATCA 57.253 37.500 0.00 0.00 0.00 2.15
2844 2905 7.217200 TCAACCATAGTGCTAGTCCAAATATC 58.783 38.462 0.00 0.00 0.00 1.63
2845 2906 7.136822 TCAACCATAGTGCTAGTCCAAATAT 57.863 36.000 0.00 0.00 0.00 1.28
2872 3016 2.029623 CCAGCTAGGCATGAGCATTTT 58.970 47.619 7.54 0.00 44.61 1.82
2873 3017 1.688772 CCAGCTAGGCATGAGCATTT 58.311 50.000 7.54 0.00 44.61 2.32
2874 3018 0.178998 CCCAGCTAGGCATGAGCATT 60.179 55.000 7.54 0.00 44.61 3.56
2875 3019 1.454976 CCCAGCTAGGCATGAGCAT 59.545 57.895 7.54 0.00 44.61 3.79
2876 3020 2.913501 CCCAGCTAGGCATGAGCA 59.086 61.111 7.54 0.00 44.61 4.26
2909 3054 2.706339 ATCTCTGGCTGCTCGATTTT 57.294 45.000 0.00 0.00 0.00 1.82
2914 3059 1.150567 CGGAAATCTCTGGCTGCTCG 61.151 60.000 0.00 0.00 0.00 5.03
2915 3060 0.813210 CCGGAAATCTCTGGCTGCTC 60.813 60.000 0.00 0.00 41.34 4.26
2917 3062 3.819188 CCGGAAATCTCTGGCTGC 58.181 61.111 0.00 0.00 41.34 5.25
2929 3074 1.301623 CCAAGGTACCATGCCGGAA 59.698 57.895 15.94 0.00 38.63 4.30
2930 3075 0.618107 TACCAAGGTACCATGCCGGA 60.618 55.000 15.94 0.00 38.63 5.14
2931 3076 0.463116 GTACCAAGGTACCATGCCGG 60.463 60.000 15.94 8.96 43.60 6.13
2932 3077 3.074594 GTACCAAGGTACCATGCCG 57.925 57.895 15.94 3.19 43.60 5.69
2951 3097 5.321927 TGCCAGTATCTCCGATAACAGATA 58.678 41.667 0.00 0.00 31.57 1.98
2956 3102 5.899120 TCTATGCCAGTATCTCCGATAAC 57.101 43.478 0.00 0.00 0.00 1.89
3058 3319 7.504238 AGACCAATACTGTGATTTTGTTAACCA 59.496 33.333 2.48 0.00 0.00 3.67
3061 3322 7.721842 TGGAGACCAATACTGTGATTTTGTTAA 59.278 33.333 0.00 0.00 0.00 2.01
3069 3330 8.328758 TCTTAAAATGGAGACCAATACTGTGAT 58.671 33.333 0.00 0.00 36.95 3.06
3071 3332 7.413000 CGTCTTAAAATGGAGACCAATACTGTG 60.413 40.741 0.00 0.00 39.23 3.66
3072 3333 6.594159 CGTCTTAAAATGGAGACCAATACTGT 59.406 38.462 0.00 0.00 39.23 3.55
3073 3334 6.037172 CCGTCTTAAAATGGAGACCAATACTG 59.963 42.308 0.00 0.00 39.23 2.74
3074 3335 6.070424 TCCGTCTTAAAATGGAGACCAATACT 60.070 38.462 0.00 0.00 39.23 2.12
3075 3336 6.110707 TCCGTCTTAAAATGGAGACCAATAC 58.889 40.000 0.00 0.00 39.23 1.89
3076 3337 6.302535 TCCGTCTTAAAATGGAGACCAATA 57.697 37.500 0.00 0.00 39.23 1.90
3077 3338 5.174037 TCCGTCTTAAAATGGAGACCAAT 57.826 39.130 0.00 0.00 39.23 3.16
3078 3339 4.627284 TCCGTCTTAAAATGGAGACCAA 57.373 40.909 0.00 0.00 39.23 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.