Multiple sequence alignment - TraesCS5B01G405800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G405800 chr5B 100.000 2753 0 0 1 2753 581211178 581213930 0.000000e+00 5084.0
1 TraesCS5B01G405800 chr2B 89.766 1925 172 16 846 2753 1674693 1672777 0.000000e+00 2440.0
2 TraesCS5B01G405800 chr2B 90.618 1279 115 5 845 2120 378079035 378077759 0.000000e+00 1692.0
3 TraesCS5B01G405800 chr2B 89.602 654 52 8 2115 2753 378062557 378061905 0.000000e+00 817.0
4 TraesCS5B01G405800 chr2B 83.429 875 144 1 846 1720 43124376 43125249 0.000000e+00 811.0
5 TraesCS5B01G405800 chr2B 83.066 561 77 13 135 690 626310893 626310346 6.850000e-136 494.0
6 TraesCS5B01G405800 chr7D 86.918 1934 222 17 845 2752 606661006 606662934 0.000000e+00 2141.0
7 TraesCS5B01G405800 chr7D 85.579 1269 156 16 845 2104 542218369 542217119 0.000000e+00 1304.0
8 TraesCS5B01G405800 chr7D 90.597 553 50 2 2202 2753 542216846 542216295 0.000000e+00 732.0
9 TraesCS5B01G405800 chr7D 79.777 539 109 0 2202 2740 615566144 615565606 2.570000e-105 392.0
10 TraesCS5B01G405800 chr7A 84.337 1909 264 25 864 2744 73318869 73320770 0.000000e+00 1836.0
11 TraesCS5B01G405800 chr7A 95.238 147 7 0 1 147 637147081 637146935 1.650000e-57 233.0
12 TraesCS5B01G405800 chr6D 88.717 1294 117 12 1485 2753 25822138 25820849 0.000000e+00 1554.0
13 TraesCS5B01G405800 chr6D 87.440 207 18 8 1 204 267550277 267550076 5.930000e-57 231.0
14 TraesCS5B01G405800 chr3B 86.911 1337 170 5 847 2180 815981615 815980281 0.000000e+00 1495.0
15 TraesCS5B01G405800 chr3B 88.929 551 59 2 2203 2752 815979935 815979386 0.000000e+00 678.0
16 TraesCS5B01G405800 chr2D 84.116 1511 211 16 845 2330 591663960 591662454 0.000000e+00 1434.0
17 TraesCS5B01G405800 chr2D 86.071 560 63 10 135 690 89547852 89548400 3.050000e-164 588.0
18 TraesCS5B01G405800 chr2D 85.432 556 66 13 135 687 135248940 135249483 5.150000e-157 564.0
19 TraesCS5B01G405800 chr3D 81.050 1314 227 21 845 2145 305458965 305460269 0.000000e+00 1027.0
20 TraesCS5B01G405800 chr3D 86.146 563 52 19 134 689 305584049 305583506 3.950000e-163 584.0
21 TraesCS5B01G405800 chr3D 84.926 544 80 2 2202 2744 305464607 305465149 1.440000e-152 549.0
22 TraesCS5B01G405800 chr3D 78.539 671 142 2 2063 2731 32306663 32307333 9.050000e-120 440.0
23 TraesCS5B01G405800 chr3D 80.734 109 16 3 710 817 612646848 612646744 2.270000e-11 80.5
24 TraesCS5B01G405800 chr5D 76.405 1797 377 36 989 2753 324112629 324110848 0.000000e+00 926.0
25 TraesCS5B01G405800 chr5D 77.890 692 126 13 2063 2731 365336572 365337259 3.300000e-109 405.0
26 TraesCS5B01G405800 chr5D 73.663 748 170 18 2017 2744 263996819 263997559 5.850000e-67 265.0
27 TraesCS5B01G405800 chr5D 74.376 601 129 15 2127 2707 7614444 7613849 1.650000e-57 233.0
28 TraesCS5B01G405800 chr5D 87.000 100 13 0 737 836 2533201 2533300 2.240000e-21 113.0
29 TraesCS5B01G405800 chr4B 87.319 552 69 1 2202 2753 12810009 12810559 5.000000e-177 630.0
30 TraesCS5B01G405800 chr4B 83.156 564 78 11 134 688 291521353 291520798 1.470000e-137 499.0
31 TraesCS5B01G405800 chr4B 75.271 554 132 4 2202 2753 567013459 567012909 2.720000e-65 259.0
32 TraesCS5B01G405800 chr4B 97.163 141 3 1 1 141 93574173 93574312 1.270000e-58 237.0
33 TraesCS5B01G405800 chr4B 97.744 133 3 0 1 133 251271848 251271980 2.130000e-56 230.0
34 TraesCS5B01G405800 chr4B 81.651 109 15 3 710 817 538390619 538390723 4.880000e-13 86.1
35 TraesCS5B01G405800 chr3A 86.957 552 70 2 2202 2752 448256403 448256953 1.080000e-173 619.0
36 TraesCS5B01G405800 chr4D 84.464 560 67 17 135 688 360759243 360759788 4.040000e-148 534.0
37 TraesCS5B01G405800 chr4D 74.167 600 127 17 2132 2709 486552631 486553224 9.920000e-55 224.0
38 TraesCS5B01G405800 chr1D 84.409 558 68 14 134 687 205392500 205393042 5.220000e-147 531.0
39 TraesCS5B01G405800 chr1D 83.186 565 67 22 134 690 159647177 159646633 2.460000e-135 492.0
40 TraesCS5B01G405800 chr1D 71.701 629 153 17 2127 2735 442402935 442402312 4.750000e-33 152.0
41 TraesCS5B01G405800 chr6A 83.156 564 81 10 134 688 212810368 212809810 1.140000e-138 503.0
42 TraesCS5B01G405800 chr6A 72.073 1597 381 44 1189 2740 454687257 454688833 4.240000e-113 418.0
43 TraesCS5B01G405800 chr1A 76.341 634 121 18 2121 2731 321857501 321858128 2.060000e-81 313.0
44 TraesCS5B01G405800 chr1A 84.058 69 11 0 2132 2200 15529964 15529896 1.770000e-07 67.6
45 TraesCS5B01G405800 chr5A 96.552 145 4 1 1 145 459055775 459055632 3.540000e-59 239.0
46 TraesCS5B01G405800 chr5A 97.163 141 4 0 1 141 529214591 529214731 3.540000e-59 239.0
47 TraesCS5B01G405800 chr5A 97.143 140 4 0 1 140 455855069 455854930 1.270000e-58 237.0
48 TraesCS5B01G405800 chr5A 89.565 115 11 1 702 815 558966263 558966377 7.950000e-31 145.0
49 TraesCS5B01G405800 chr4A 94.156 154 5 4 1 151 191323442 191323290 5.930000e-57 231.0
50 TraesCS5B01G405800 chr4A 80.734 109 16 3 710 817 562999207 562999311 2.270000e-11 80.5
51 TraesCS5B01G405800 chr1B 86.364 132 18 0 706 837 348330354 348330485 7.950000e-31 145.0
52 TraesCS5B01G405800 chrUn 72.099 405 89 17 2128 2513 298399406 298399805 1.740000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G405800 chr5B 581211178 581213930 2752 False 5084.0 5084 100.000 1 2753 1 chr5B.!!$F1 2752
1 TraesCS5B01G405800 chr2B 1672777 1674693 1916 True 2440.0 2440 89.766 846 2753 1 chr2B.!!$R1 1907
2 TraesCS5B01G405800 chr2B 378077759 378079035 1276 True 1692.0 1692 90.618 845 2120 1 chr2B.!!$R3 1275
3 TraesCS5B01G405800 chr2B 378061905 378062557 652 True 817.0 817 89.602 2115 2753 1 chr2B.!!$R2 638
4 TraesCS5B01G405800 chr2B 43124376 43125249 873 False 811.0 811 83.429 846 1720 1 chr2B.!!$F1 874
5 TraesCS5B01G405800 chr2B 626310346 626310893 547 True 494.0 494 83.066 135 690 1 chr2B.!!$R4 555
6 TraesCS5B01G405800 chr7D 606661006 606662934 1928 False 2141.0 2141 86.918 845 2752 1 chr7D.!!$F1 1907
7 TraesCS5B01G405800 chr7D 542216295 542218369 2074 True 1018.0 1304 88.088 845 2753 2 chr7D.!!$R2 1908
8 TraesCS5B01G405800 chr7D 615565606 615566144 538 True 392.0 392 79.777 2202 2740 1 chr7D.!!$R1 538
9 TraesCS5B01G405800 chr7A 73318869 73320770 1901 False 1836.0 1836 84.337 864 2744 1 chr7A.!!$F1 1880
10 TraesCS5B01G405800 chr6D 25820849 25822138 1289 True 1554.0 1554 88.717 1485 2753 1 chr6D.!!$R1 1268
11 TraesCS5B01G405800 chr3B 815979386 815981615 2229 True 1086.5 1495 87.920 847 2752 2 chr3B.!!$R1 1905
12 TraesCS5B01G405800 chr2D 591662454 591663960 1506 True 1434.0 1434 84.116 845 2330 1 chr2D.!!$R1 1485
13 TraesCS5B01G405800 chr2D 89547852 89548400 548 False 588.0 588 86.071 135 690 1 chr2D.!!$F1 555
14 TraesCS5B01G405800 chr2D 135248940 135249483 543 False 564.0 564 85.432 135 687 1 chr2D.!!$F2 552
15 TraesCS5B01G405800 chr3D 305458965 305460269 1304 False 1027.0 1027 81.050 845 2145 1 chr3D.!!$F2 1300
16 TraesCS5B01G405800 chr3D 305583506 305584049 543 True 584.0 584 86.146 134 689 1 chr3D.!!$R1 555
17 TraesCS5B01G405800 chr3D 305464607 305465149 542 False 549.0 549 84.926 2202 2744 1 chr3D.!!$F3 542
18 TraesCS5B01G405800 chr3D 32306663 32307333 670 False 440.0 440 78.539 2063 2731 1 chr3D.!!$F1 668
19 TraesCS5B01G405800 chr5D 324110848 324112629 1781 True 926.0 926 76.405 989 2753 1 chr5D.!!$R2 1764
20 TraesCS5B01G405800 chr5D 365336572 365337259 687 False 405.0 405 77.890 2063 2731 1 chr5D.!!$F3 668
21 TraesCS5B01G405800 chr5D 263996819 263997559 740 False 265.0 265 73.663 2017 2744 1 chr5D.!!$F2 727
22 TraesCS5B01G405800 chr5D 7613849 7614444 595 True 233.0 233 74.376 2127 2707 1 chr5D.!!$R1 580
23 TraesCS5B01G405800 chr4B 12810009 12810559 550 False 630.0 630 87.319 2202 2753 1 chr4B.!!$F1 551
24 TraesCS5B01G405800 chr4B 291520798 291521353 555 True 499.0 499 83.156 134 688 1 chr4B.!!$R1 554
25 TraesCS5B01G405800 chr4B 567012909 567013459 550 True 259.0 259 75.271 2202 2753 1 chr4B.!!$R2 551
26 TraesCS5B01G405800 chr3A 448256403 448256953 550 False 619.0 619 86.957 2202 2752 1 chr3A.!!$F1 550
27 TraesCS5B01G405800 chr4D 360759243 360759788 545 False 534.0 534 84.464 135 688 1 chr4D.!!$F1 553
28 TraesCS5B01G405800 chr4D 486552631 486553224 593 False 224.0 224 74.167 2132 2709 1 chr4D.!!$F2 577
29 TraesCS5B01G405800 chr1D 205392500 205393042 542 False 531.0 531 84.409 134 687 1 chr1D.!!$F1 553
30 TraesCS5B01G405800 chr1D 159646633 159647177 544 True 492.0 492 83.186 134 690 1 chr1D.!!$R1 556
31 TraesCS5B01G405800 chr6A 212809810 212810368 558 True 503.0 503 83.156 134 688 1 chr6A.!!$R1 554
32 TraesCS5B01G405800 chr6A 454687257 454688833 1576 False 418.0 418 72.073 1189 2740 1 chr6A.!!$F1 1551
33 TraesCS5B01G405800 chr1A 321857501 321858128 627 False 313.0 313 76.341 2121 2731 1 chr1A.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.032615 AACACACCAGCCCAAAAGGA 60.033 50.0 0.0 0.0 38.24 3.36 F
853 890 0.034089 GCAGCACACCTTTCCCCTAT 60.034 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1507 0.109532 TGTTTGCAGAATGGGTCCGA 59.890 50.0 0.0 0.0 35.86 4.55 R
2625 3009 0.323999 TAGGCAGTCCCTGAACGCTA 60.324 55.0 0.0 0.0 45.91 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.397482 GCACAAAAATAACACCATGGCA 58.603 40.909 13.04 0.00 0.00 4.92
22 23 3.812053 GCACAAAAATAACACCATGGCAA 59.188 39.130 13.04 0.00 0.00 4.52
23 24 4.455190 GCACAAAAATAACACCATGGCAAT 59.545 37.500 13.04 0.00 0.00 3.56
24 25 5.048852 GCACAAAAATAACACCATGGCAATT 60.049 36.000 13.04 6.30 0.00 2.32
25 26 6.601264 CACAAAAATAACACCATGGCAATTC 58.399 36.000 13.04 0.00 0.00 2.17
26 27 6.427547 CACAAAAATAACACCATGGCAATTCT 59.572 34.615 13.04 0.00 0.00 2.40
27 28 7.601886 CACAAAAATAACACCATGGCAATTCTA 59.398 33.333 13.04 0.00 0.00 2.10
28 29 7.602265 ACAAAAATAACACCATGGCAATTCTAC 59.398 33.333 13.04 0.00 0.00 2.59
29 30 7.480760 AAAATAACACCATGGCAATTCTACT 57.519 32.000 13.04 0.00 0.00 2.57
30 31 6.455360 AATAACACCATGGCAATTCTACTG 57.545 37.500 13.04 1.18 0.00 2.74
31 32 3.719268 ACACCATGGCAATTCTACTGA 57.281 42.857 13.04 0.00 0.00 3.41
32 33 4.032960 ACACCATGGCAATTCTACTGAA 57.967 40.909 13.04 0.00 36.54 3.02
33 34 4.406456 ACACCATGGCAATTCTACTGAAA 58.594 39.130 13.04 0.00 35.63 2.69
34 35 4.832266 ACACCATGGCAATTCTACTGAAAA 59.168 37.500 13.04 0.00 35.63 2.29
35 36 5.163513 CACCATGGCAATTCTACTGAAAAC 58.836 41.667 13.04 0.00 35.63 2.43
36 37 4.832266 ACCATGGCAATTCTACTGAAAACA 59.168 37.500 13.04 0.00 35.63 2.83
37 38 5.304101 ACCATGGCAATTCTACTGAAAACAA 59.696 36.000 13.04 0.00 35.63 2.83
38 39 5.634859 CCATGGCAATTCTACTGAAAACAAC 59.365 40.000 0.00 0.00 35.63 3.32
39 40 4.854399 TGGCAATTCTACTGAAAACAACG 58.146 39.130 0.00 0.00 35.63 4.10
40 41 4.336993 TGGCAATTCTACTGAAAACAACGT 59.663 37.500 0.00 0.00 35.63 3.99
41 42 4.909880 GGCAATTCTACTGAAAACAACGTC 59.090 41.667 0.00 0.00 35.63 4.34
42 43 5.504994 GGCAATTCTACTGAAAACAACGTCA 60.505 40.000 0.00 0.00 35.63 4.35
43 44 5.621228 GCAATTCTACTGAAAACAACGTCAG 59.379 40.000 0.00 0.00 45.59 3.51
47 48 2.645628 CTGAAAACAACGTCAGTCCG 57.354 50.000 0.00 0.00 37.16 4.79
48 49 1.260561 CTGAAAACAACGTCAGTCCGG 59.739 52.381 0.00 0.00 37.16 5.14
49 50 0.584876 GAAAACAACGTCAGTCCGGG 59.415 55.000 0.00 0.00 0.00 5.73
50 51 0.107557 AAAACAACGTCAGTCCGGGT 60.108 50.000 0.00 0.00 0.00 5.28
51 52 0.107557 AAACAACGTCAGTCCGGGTT 60.108 50.000 0.00 0.00 33.07 4.11
52 53 0.752054 AACAACGTCAGTCCGGGTTA 59.248 50.000 0.00 0.00 30.98 2.85
53 54 0.316204 ACAACGTCAGTCCGGGTTAG 59.684 55.000 0.00 0.00 0.00 2.34
54 55 0.316204 CAACGTCAGTCCGGGTTAGT 59.684 55.000 0.00 0.00 0.00 2.24
55 56 1.043022 AACGTCAGTCCGGGTTAGTT 58.957 50.000 0.00 0.00 0.00 2.24
56 57 0.600057 ACGTCAGTCCGGGTTAGTTC 59.400 55.000 0.00 0.00 0.00 3.01
57 58 0.108945 CGTCAGTCCGGGTTAGTTCC 60.109 60.000 0.00 0.00 0.00 3.62
58 59 0.971386 GTCAGTCCGGGTTAGTTCCA 59.029 55.000 0.00 0.00 0.00 3.53
59 60 1.553704 GTCAGTCCGGGTTAGTTCCAT 59.446 52.381 0.00 0.00 0.00 3.41
60 61 2.027469 GTCAGTCCGGGTTAGTTCCATT 60.027 50.000 0.00 0.00 0.00 3.16
61 62 2.235402 TCAGTCCGGGTTAGTTCCATTC 59.765 50.000 0.00 0.00 0.00 2.67
62 63 2.027561 CAGTCCGGGTTAGTTCCATTCA 60.028 50.000 0.00 0.00 0.00 2.57
63 64 2.640826 AGTCCGGGTTAGTTCCATTCAA 59.359 45.455 0.00 0.00 0.00 2.69
64 65 3.073356 AGTCCGGGTTAGTTCCATTCAAA 59.927 43.478 0.00 0.00 0.00 2.69
65 66 4.014406 GTCCGGGTTAGTTCCATTCAAAT 58.986 43.478 0.00 0.00 0.00 2.32
66 67 4.095932 GTCCGGGTTAGTTCCATTCAAATC 59.904 45.833 0.00 0.00 0.00 2.17
67 68 4.013728 CCGGGTTAGTTCCATTCAAATCA 58.986 43.478 0.00 0.00 0.00 2.57
68 69 4.096382 CCGGGTTAGTTCCATTCAAATCAG 59.904 45.833 0.00 0.00 0.00 2.90
69 70 4.096382 CGGGTTAGTTCCATTCAAATCAGG 59.904 45.833 0.00 0.00 0.00 3.86
70 71 4.142160 GGGTTAGTTCCATTCAAATCAGGC 60.142 45.833 0.00 0.00 0.00 4.85
71 72 4.462483 GGTTAGTTCCATTCAAATCAGGCA 59.538 41.667 0.00 0.00 0.00 4.75
72 73 5.047377 GGTTAGTTCCATTCAAATCAGGCAA 60.047 40.000 0.00 0.00 0.00 4.52
73 74 4.796038 AGTTCCATTCAAATCAGGCAAG 57.204 40.909 0.00 0.00 0.00 4.01
74 75 4.154942 AGTTCCATTCAAATCAGGCAAGT 58.845 39.130 0.00 0.00 0.00 3.16
75 76 4.590222 AGTTCCATTCAAATCAGGCAAGTT 59.410 37.500 0.00 0.00 0.00 2.66
76 77 5.774690 AGTTCCATTCAAATCAGGCAAGTTA 59.225 36.000 0.00 0.00 0.00 2.24
77 78 5.902613 TCCATTCAAATCAGGCAAGTTAG 57.097 39.130 0.00 0.00 0.00 2.34
78 79 5.569355 TCCATTCAAATCAGGCAAGTTAGA 58.431 37.500 0.00 0.00 0.00 2.10
79 80 5.649395 TCCATTCAAATCAGGCAAGTTAGAG 59.351 40.000 0.00 0.00 0.00 2.43
80 81 5.416952 CCATTCAAATCAGGCAAGTTAGAGT 59.583 40.000 0.00 0.00 0.00 3.24
81 82 6.404074 CCATTCAAATCAGGCAAGTTAGAGTC 60.404 42.308 0.00 0.00 0.00 3.36
82 83 4.579869 TCAAATCAGGCAAGTTAGAGTCC 58.420 43.478 0.00 0.00 0.00 3.85
83 84 4.041567 TCAAATCAGGCAAGTTAGAGTCCA 59.958 41.667 0.00 0.00 0.00 4.02
84 85 4.640771 AATCAGGCAAGTTAGAGTCCAA 57.359 40.909 0.00 0.00 0.00 3.53
85 86 4.640771 ATCAGGCAAGTTAGAGTCCAAA 57.359 40.909 0.00 0.00 0.00 3.28
86 87 4.431416 TCAGGCAAGTTAGAGTCCAAAA 57.569 40.909 0.00 0.00 0.00 2.44
87 88 4.134563 TCAGGCAAGTTAGAGTCCAAAAC 58.865 43.478 0.00 0.00 0.00 2.43
88 89 3.882888 CAGGCAAGTTAGAGTCCAAAACA 59.117 43.478 4.12 0.00 0.00 2.83
89 90 4.338118 CAGGCAAGTTAGAGTCCAAAACAA 59.662 41.667 4.12 0.00 0.00 2.83
90 91 4.580580 AGGCAAGTTAGAGTCCAAAACAAG 59.419 41.667 4.12 0.00 0.00 3.16
91 92 4.261614 GGCAAGTTAGAGTCCAAAACAAGG 60.262 45.833 4.12 0.00 0.00 3.61
92 93 4.261614 GCAAGTTAGAGTCCAAAACAAGGG 60.262 45.833 4.12 0.00 0.00 3.95
93 94 3.487372 AGTTAGAGTCCAAAACAAGGGC 58.513 45.455 4.12 0.00 0.00 5.19
94 95 3.117663 AGTTAGAGTCCAAAACAAGGGCA 60.118 43.478 0.00 0.00 31.65 5.36
95 96 2.452600 AGAGTCCAAAACAAGGGCAA 57.547 45.000 0.00 0.00 31.65 4.52
96 97 2.745968 AGAGTCCAAAACAAGGGCAAA 58.254 42.857 0.00 0.00 31.65 3.68
97 98 3.103742 AGAGTCCAAAACAAGGGCAAAA 58.896 40.909 0.00 0.00 31.65 2.44
98 99 3.132824 AGAGTCCAAAACAAGGGCAAAAG 59.867 43.478 0.00 0.00 31.65 2.27
99 100 2.837591 AGTCCAAAACAAGGGCAAAAGT 59.162 40.909 0.00 0.00 31.65 2.66
100 101 2.935849 GTCCAAAACAAGGGCAAAAGTG 59.064 45.455 0.00 0.00 0.00 3.16
101 102 2.569404 TCCAAAACAAGGGCAAAAGTGT 59.431 40.909 0.00 0.00 0.00 3.55
102 103 3.008485 TCCAAAACAAGGGCAAAAGTGTT 59.992 39.130 0.00 0.00 35.77 3.32
103 104 3.755905 CCAAAACAAGGGCAAAAGTGTTT 59.244 39.130 0.00 0.00 44.01 2.83
104 105 4.379290 CCAAAACAAGGGCAAAAGTGTTTG 60.379 41.667 1.73 0.00 41.94 2.93
105 106 2.689553 ACAAGGGCAAAAGTGTTTGG 57.310 45.000 1.72 0.00 43.73 3.28
106 107 2.183679 ACAAGGGCAAAAGTGTTTGGA 58.816 42.857 1.72 0.00 43.73 3.53
107 108 2.569404 ACAAGGGCAAAAGTGTTTGGAA 59.431 40.909 1.72 0.00 43.73 3.53
108 109 3.008485 ACAAGGGCAAAAGTGTTTGGAAA 59.992 39.130 1.72 0.00 43.73 3.13
109 110 3.990959 AGGGCAAAAGTGTTTGGAAAA 57.009 38.095 1.72 0.00 43.73 2.29
110 111 3.872696 AGGGCAAAAGTGTTTGGAAAAG 58.127 40.909 1.72 0.00 43.73 2.27
111 112 3.263170 AGGGCAAAAGTGTTTGGAAAAGT 59.737 39.130 1.72 0.00 43.73 2.66
112 113 4.468153 AGGGCAAAAGTGTTTGGAAAAGTA 59.532 37.500 1.72 0.00 43.73 2.24
113 114 4.808895 GGGCAAAAGTGTTTGGAAAAGTAG 59.191 41.667 1.72 0.00 43.73 2.57
114 115 5.394773 GGGCAAAAGTGTTTGGAAAAGTAGA 60.395 40.000 1.72 0.00 43.73 2.59
115 116 6.280643 GGCAAAAGTGTTTGGAAAAGTAGAT 58.719 36.000 1.72 0.00 43.73 1.98
116 117 7.430441 GGCAAAAGTGTTTGGAAAAGTAGATA 58.570 34.615 1.72 0.00 43.73 1.98
117 118 7.381408 GGCAAAAGTGTTTGGAAAAGTAGATAC 59.619 37.037 1.72 0.00 43.73 2.24
118 119 7.112984 GCAAAAGTGTTTGGAAAAGTAGATACG 59.887 37.037 1.72 0.00 43.73 3.06
119 120 8.339714 CAAAAGTGTTTGGAAAAGTAGATACGA 58.660 33.333 0.00 0.00 40.47 3.43
120 121 8.617290 AAAGTGTTTGGAAAAGTAGATACGAT 57.383 30.769 0.00 0.00 0.00 3.73
121 122 7.596749 AGTGTTTGGAAAAGTAGATACGATG 57.403 36.000 0.00 0.00 0.00 3.84
122 123 6.594159 AGTGTTTGGAAAAGTAGATACGATGG 59.406 38.462 0.00 0.00 0.00 3.51
123 124 6.592607 GTGTTTGGAAAAGTAGATACGATGGA 59.407 38.462 0.00 0.00 0.00 3.41
124 125 6.816640 TGTTTGGAAAAGTAGATACGATGGAG 59.183 38.462 0.00 0.00 0.00 3.86
125 126 6.785337 TTGGAAAAGTAGATACGATGGAGA 57.215 37.500 0.00 0.00 0.00 3.71
126 127 6.978674 TGGAAAAGTAGATACGATGGAGAT 57.021 37.500 0.00 0.00 0.00 2.75
127 128 6.749139 TGGAAAAGTAGATACGATGGAGATG 58.251 40.000 0.00 0.00 0.00 2.90
128 129 6.323996 TGGAAAAGTAGATACGATGGAGATGT 59.676 38.462 0.00 0.00 0.00 3.06
129 130 7.504574 TGGAAAAGTAGATACGATGGAGATGTA 59.495 37.037 0.00 0.00 0.00 2.29
130 131 8.524487 GGAAAAGTAGATACGATGGAGATGTAT 58.476 37.037 0.00 0.00 0.00 2.29
131 132 9.562583 GAAAAGTAGATACGATGGAGATGTATC 57.437 37.037 0.00 3.95 42.95 2.24
132 133 8.637196 AAAGTAGATACGATGGAGATGTATCA 57.363 34.615 12.52 0.00 44.32 2.15
146 147 1.143889 TGTATCAACACACCAGCCCAA 59.856 47.619 0.00 0.00 0.00 4.12
151 152 0.032615 AACACACCAGCCCAAAAGGA 60.033 50.000 0.00 0.00 38.24 3.36
248 251 4.499472 TCCACCTAAGAGAAAGGAAAGGA 58.501 43.478 0.00 0.00 37.57 3.36
344 363 3.650950 GCCACCTGCTCCTTGGGA 61.651 66.667 0.00 0.00 36.87 4.37
371 393 2.771762 GCTGCATCCCCTCCTCCT 60.772 66.667 0.00 0.00 0.00 3.69
413 449 3.403558 GTGGAGGGAGAGGGGCAC 61.404 72.222 0.00 0.00 0.00 5.01
414 450 3.940480 TGGAGGGAGAGGGGCACA 61.940 66.667 0.00 0.00 0.00 4.57
423 459 1.228552 GAGGGGCACAACACACCAT 60.229 57.895 0.00 0.00 0.00 3.55
470 506 3.140144 CCTCTCCCTCTAGTTCATCCTCT 59.860 52.174 0.00 0.00 0.00 3.69
556 593 3.570926 ATTGTGCTGCTGAAACTCATG 57.429 42.857 0.00 0.00 0.00 3.07
560 597 2.068519 TGCTGCTGAAACTCATGTACG 58.931 47.619 0.00 0.00 0.00 3.67
613 650 0.362512 GACGTCATCGAGTTGAACGC 59.637 55.000 11.55 0.00 40.62 4.84
690 727 0.522626 TTCGACTACATCAACCGCGA 59.477 50.000 8.23 0.00 0.00 5.87
691 728 0.522626 TCGACTACATCAACCGCGAA 59.477 50.000 8.23 0.00 0.00 4.70
692 729 1.133598 TCGACTACATCAACCGCGAAT 59.866 47.619 8.23 0.00 0.00 3.34
693 730 2.355444 TCGACTACATCAACCGCGAATA 59.645 45.455 8.23 0.00 0.00 1.75
694 731 3.110358 CGACTACATCAACCGCGAATAA 58.890 45.455 8.23 0.00 0.00 1.40
695 732 3.734231 CGACTACATCAACCGCGAATAAT 59.266 43.478 8.23 0.00 0.00 1.28
696 733 4.913345 CGACTACATCAACCGCGAATAATA 59.087 41.667 8.23 0.00 0.00 0.98
697 734 5.400188 CGACTACATCAACCGCGAATAATAA 59.600 40.000 8.23 0.00 0.00 1.40
698 735 6.398621 CGACTACATCAACCGCGAATAATAAG 60.399 42.308 8.23 0.00 0.00 1.73
699 736 6.278363 ACTACATCAACCGCGAATAATAAGT 58.722 36.000 8.23 0.00 0.00 2.24
700 737 5.652744 ACATCAACCGCGAATAATAAGTC 57.347 39.130 8.23 0.00 0.00 3.01
701 738 4.510340 ACATCAACCGCGAATAATAAGTCC 59.490 41.667 8.23 0.00 0.00 3.85
702 739 3.460103 TCAACCGCGAATAATAAGTCCC 58.540 45.455 8.23 0.00 0.00 4.46
703 740 3.118702 TCAACCGCGAATAATAAGTCCCA 60.119 43.478 8.23 0.00 0.00 4.37
704 741 3.547054 ACCGCGAATAATAAGTCCCAA 57.453 42.857 8.23 0.00 0.00 4.12
705 742 3.200483 ACCGCGAATAATAAGTCCCAAC 58.800 45.455 8.23 0.00 0.00 3.77
706 743 3.199677 CCGCGAATAATAAGTCCCAACA 58.800 45.455 8.23 0.00 0.00 3.33
707 744 3.001939 CCGCGAATAATAAGTCCCAACAC 59.998 47.826 8.23 0.00 0.00 3.32
708 745 3.302221 CGCGAATAATAAGTCCCAACACG 60.302 47.826 0.00 0.00 0.00 4.49
709 746 3.619929 GCGAATAATAAGTCCCAACACGT 59.380 43.478 0.00 0.00 0.00 4.49
710 747 4.493545 GCGAATAATAAGTCCCAACACGTG 60.494 45.833 15.48 15.48 0.00 4.49
711 748 4.865925 CGAATAATAAGTCCCAACACGTGA 59.134 41.667 25.01 0.00 0.00 4.35
712 749 5.522460 CGAATAATAAGTCCCAACACGTGAT 59.478 40.000 25.01 7.78 0.00 3.06
713 750 6.509517 CGAATAATAAGTCCCAACACGTGATG 60.510 42.308 25.01 21.17 0.00 3.07
714 751 3.973206 ATAAGTCCCAACACGTGATGA 57.027 42.857 25.48 11.40 0.00 2.92
715 752 2.859165 AAGTCCCAACACGTGATGAT 57.141 45.000 25.48 7.10 0.00 2.45
716 753 3.973206 AAGTCCCAACACGTGATGATA 57.027 42.857 25.48 11.06 0.00 2.15
717 754 3.526931 AGTCCCAACACGTGATGATAG 57.473 47.619 25.48 14.10 0.00 2.08
718 755 2.832129 AGTCCCAACACGTGATGATAGT 59.168 45.455 25.48 13.17 0.00 2.12
719 756 2.930040 GTCCCAACACGTGATGATAGTG 59.070 50.000 25.48 9.35 41.28 2.74
720 757 2.829120 TCCCAACACGTGATGATAGTGA 59.171 45.455 25.48 11.34 39.04 3.41
721 758 3.259625 TCCCAACACGTGATGATAGTGAA 59.740 43.478 25.48 1.85 39.04 3.18
722 759 4.081142 TCCCAACACGTGATGATAGTGAAT 60.081 41.667 25.48 0.00 39.04 2.57
723 760 4.034394 CCCAACACGTGATGATAGTGAATG 59.966 45.833 25.48 6.66 39.04 2.67
724 761 4.869861 CCAACACGTGATGATAGTGAATGA 59.130 41.667 25.48 0.00 39.04 2.57
725 762 5.351189 CCAACACGTGATGATAGTGAATGAA 59.649 40.000 25.48 0.00 39.04 2.57
726 763 6.456047 CCAACACGTGATGATAGTGAATGAAG 60.456 42.308 25.48 1.88 39.04 3.02
727 764 5.724328 ACACGTGATGATAGTGAATGAAGT 58.276 37.500 25.01 0.00 39.04 3.01
728 765 5.578336 ACACGTGATGATAGTGAATGAAGTG 59.422 40.000 25.01 0.00 39.04 3.16
729 766 5.807011 CACGTGATGATAGTGAATGAAGTGA 59.193 40.000 10.90 0.00 38.06 3.41
730 767 6.020041 CACGTGATGATAGTGAATGAAGTGAG 60.020 42.308 10.90 0.00 38.06 3.51
731 768 5.461407 CGTGATGATAGTGAATGAAGTGAGG 59.539 44.000 0.00 0.00 0.00 3.86
732 769 6.577103 GTGATGATAGTGAATGAAGTGAGGA 58.423 40.000 0.00 0.00 0.00 3.71
733 770 6.700960 GTGATGATAGTGAATGAAGTGAGGAG 59.299 42.308 0.00 0.00 0.00 3.69
734 771 6.608808 TGATGATAGTGAATGAAGTGAGGAGA 59.391 38.462 0.00 0.00 0.00 3.71
735 772 6.214191 TGATAGTGAATGAAGTGAGGAGAC 57.786 41.667 0.00 0.00 0.00 3.36
737 774 6.438741 TGATAGTGAATGAAGTGAGGAGACTT 59.561 38.462 0.00 0.00 44.43 3.01
738 775 5.559148 AGTGAATGAAGTGAGGAGACTTT 57.441 39.130 0.00 0.00 44.43 2.66
739 776 5.934781 AGTGAATGAAGTGAGGAGACTTTT 58.065 37.500 0.00 0.00 44.43 2.27
740 777 7.067496 AGTGAATGAAGTGAGGAGACTTTTA 57.933 36.000 0.00 0.00 44.43 1.52
741 778 7.158021 AGTGAATGAAGTGAGGAGACTTTTAG 58.842 38.462 0.00 0.00 44.43 1.85
742 779 6.370166 GTGAATGAAGTGAGGAGACTTTTAGG 59.630 42.308 0.00 0.00 44.43 2.69
743 780 6.043243 TGAATGAAGTGAGGAGACTTTTAGGT 59.957 38.462 0.00 0.00 44.43 3.08
744 781 5.215252 TGAAGTGAGGAGACTTTTAGGTG 57.785 43.478 0.00 0.00 44.43 4.00
745 782 4.899457 TGAAGTGAGGAGACTTTTAGGTGA 59.101 41.667 0.00 0.00 44.43 4.02
746 783 5.365605 TGAAGTGAGGAGACTTTTAGGTGAA 59.634 40.000 0.00 0.00 44.43 3.18
747 784 5.888982 AGTGAGGAGACTTTTAGGTGAAA 57.111 39.130 0.00 0.00 44.43 2.69
748 785 5.859495 AGTGAGGAGACTTTTAGGTGAAAG 58.141 41.667 0.00 0.00 44.43 2.62
749 786 4.998033 GTGAGGAGACTTTTAGGTGAAAGG 59.002 45.833 2.86 0.00 44.43 3.11
750 787 4.041691 TGAGGAGACTTTTAGGTGAAAGGG 59.958 45.833 2.86 0.00 44.43 3.95
751 788 4.240323 AGGAGACTTTTAGGTGAAAGGGA 58.760 43.478 2.86 0.00 40.19 4.20
752 789 4.852697 AGGAGACTTTTAGGTGAAAGGGAT 59.147 41.667 2.86 0.00 40.19 3.85
753 790 6.030082 AGGAGACTTTTAGGTGAAAGGGATA 58.970 40.000 2.86 0.00 40.19 2.59
754 791 6.504279 AGGAGACTTTTAGGTGAAAGGGATAA 59.496 38.462 2.86 0.00 40.19 1.75
755 792 6.598457 GGAGACTTTTAGGTGAAAGGGATAAC 59.402 42.308 2.86 0.00 40.19 1.89
756 793 7.331089 AGACTTTTAGGTGAAAGGGATAACT 57.669 36.000 2.86 0.00 40.19 2.24
757 794 7.395617 AGACTTTTAGGTGAAAGGGATAACTC 58.604 38.462 2.86 0.00 40.19 3.01
758 795 7.237887 AGACTTTTAGGTGAAAGGGATAACTCT 59.762 37.037 2.86 0.00 40.19 3.24
759 796 8.445361 ACTTTTAGGTGAAAGGGATAACTCTA 57.555 34.615 2.86 0.00 40.19 2.43
760 797 9.059023 ACTTTTAGGTGAAAGGGATAACTCTAT 57.941 33.333 2.86 0.00 40.19 1.98
761 798 9.907229 CTTTTAGGTGAAAGGGATAACTCTATT 57.093 33.333 0.00 0.00 33.90 1.73
762 799 9.681062 TTTTAGGTGAAAGGGATAACTCTATTG 57.319 33.333 0.00 0.00 0.00 1.90
763 800 5.685728 AGGTGAAAGGGATAACTCTATTGC 58.314 41.667 0.00 0.00 0.00 3.56
764 801 5.430089 AGGTGAAAGGGATAACTCTATTGCT 59.570 40.000 0.00 0.00 0.00 3.91
765 802 5.760743 GGTGAAAGGGATAACTCTATTGCTC 59.239 44.000 0.00 0.00 0.00 4.26
766 803 6.349300 GTGAAAGGGATAACTCTATTGCTCA 58.651 40.000 0.00 0.00 0.00 4.26
767 804 6.995091 GTGAAAGGGATAACTCTATTGCTCAT 59.005 38.462 0.00 0.00 0.00 2.90
768 805 8.150945 GTGAAAGGGATAACTCTATTGCTCATA 58.849 37.037 0.00 0.00 0.00 2.15
769 806 8.884323 TGAAAGGGATAACTCTATTGCTCATAT 58.116 33.333 0.00 0.00 0.00 1.78
770 807 9.732130 GAAAGGGATAACTCTATTGCTCATATT 57.268 33.333 0.00 0.00 0.00 1.28
773 810 9.554053 AGGGATAACTCTATTGCTCATATTAGT 57.446 33.333 0.00 0.00 0.00 2.24
778 815 7.782897 ACTCTATTGCTCATATTAGTAGGCA 57.217 36.000 0.00 0.00 0.00 4.75
779 816 7.607250 ACTCTATTGCTCATATTAGTAGGCAC 58.393 38.462 0.00 0.00 0.00 5.01
780 817 6.936279 TCTATTGCTCATATTAGTAGGCACC 58.064 40.000 0.00 0.00 0.00 5.01
781 818 5.567037 ATTGCTCATATTAGTAGGCACCA 57.433 39.130 0.00 0.00 0.00 4.17
782 819 5.366482 TTGCTCATATTAGTAGGCACCAA 57.634 39.130 0.00 0.00 0.00 3.67
783 820 5.366482 TGCTCATATTAGTAGGCACCAAA 57.634 39.130 0.00 0.00 0.00 3.28
784 821 5.750524 TGCTCATATTAGTAGGCACCAAAA 58.249 37.500 0.00 0.00 0.00 2.44
785 822 6.364701 TGCTCATATTAGTAGGCACCAAAAT 58.635 36.000 0.00 0.00 0.00 1.82
786 823 6.262944 TGCTCATATTAGTAGGCACCAAAATG 59.737 38.462 0.00 0.00 0.00 2.32
787 824 6.263168 GCTCATATTAGTAGGCACCAAAATGT 59.737 38.462 0.00 0.00 0.00 2.71
788 825 7.520614 GCTCATATTAGTAGGCACCAAAATGTC 60.521 40.741 0.00 0.00 0.00 3.06
789 826 7.342581 TCATATTAGTAGGCACCAAAATGTCA 58.657 34.615 0.00 0.00 0.00 3.58
790 827 7.998383 TCATATTAGTAGGCACCAAAATGTCAT 59.002 33.333 0.00 0.00 0.00 3.06
791 828 8.632679 CATATTAGTAGGCACCAAAATGTCATT 58.367 33.333 0.00 0.00 0.00 2.57
792 829 9.860650 ATATTAGTAGGCACCAAAATGTCATTA 57.139 29.630 0.00 0.00 0.00 1.90
793 830 7.624360 TTAGTAGGCACCAAAATGTCATTAG 57.376 36.000 0.00 0.00 0.00 1.73
794 831 5.570320 AGTAGGCACCAAAATGTCATTAGT 58.430 37.500 0.00 0.00 0.00 2.24
795 832 5.648092 AGTAGGCACCAAAATGTCATTAGTC 59.352 40.000 0.00 0.00 0.00 2.59
796 833 4.406456 AGGCACCAAAATGTCATTAGTCA 58.594 39.130 0.00 0.00 0.00 3.41
797 834 5.018809 AGGCACCAAAATGTCATTAGTCAT 58.981 37.500 0.00 0.00 0.00 3.06
798 835 6.186957 AGGCACCAAAATGTCATTAGTCATA 58.813 36.000 0.00 0.00 0.00 2.15
799 836 6.319658 AGGCACCAAAATGTCATTAGTCATAG 59.680 38.462 0.00 0.00 0.00 2.23
800 837 5.973565 GCACCAAAATGTCATTAGTCATAGC 59.026 40.000 0.00 0.00 0.00 2.97
801 838 6.183360 GCACCAAAATGTCATTAGTCATAGCT 60.183 38.462 0.00 0.00 0.00 3.32
802 839 7.629222 GCACCAAAATGTCATTAGTCATAGCTT 60.629 37.037 0.00 0.00 0.00 3.74
803 840 8.892723 CACCAAAATGTCATTAGTCATAGCTTA 58.107 33.333 0.00 0.00 0.00 3.09
804 841 9.113838 ACCAAAATGTCATTAGTCATAGCTTAG 57.886 33.333 0.00 0.00 0.00 2.18
805 842 8.072567 CCAAAATGTCATTAGTCATAGCTTAGC 58.927 37.037 0.00 0.00 0.00 3.09
806 843 8.834465 CAAAATGTCATTAGTCATAGCTTAGCT 58.166 33.333 12.67 12.67 43.41 3.32
807 844 8.970859 AAATGTCATTAGTCATAGCTTAGCTT 57.029 30.769 13.44 0.00 40.44 3.74
808 845 8.600449 AATGTCATTAGTCATAGCTTAGCTTC 57.400 34.615 13.44 1.29 40.44 3.86
809 846 7.353414 TGTCATTAGTCATAGCTTAGCTTCT 57.647 36.000 13.44 8.82 40.44 2.85
810 847 7.786030 TGTCATTAGTCATAGCTTAGCTTCTT 58.214 34.615 13.44 0.00 40.44 2.52
811 848 8.260818 TGTCATTAGTCATAGCTTAGCTTCTTT 58.739 33.333 13.44 0.00 40.44 2.52
812 849 9.103861 GTCATTAGTCATAGCTTAGCTTCTTTT 57.896 33.333 13.44 0.00 40.44 2.27
813 850 9.102757 TCATTAGTCATAGCTTAGCTTCTTTTG 57.897 33.333 13.44 3.49 40.44 2.44
814 851 7.849804 TTAGTCATAGCTTAGCTTCTTTTGG 57.150 36.000 13.44 0.00 40.44 3.28
815 852 5.810095 AGTCATAGCTTAGCTTCTTTTGGT 58.190 37.500 13.44 0.00 40.44 3.67
816 853 5.877564 AGTCATAGCTTAGCTTCTTTTGGTC 59.122 40.000 13.44 1.77 40.44 4.02
817 854 5.643777 GTCATAGCTTAGCTTCTTTTGGTCA 59.356 40.000 13.44 0.00 40.44 4.02
818 855 6.149474 GTCATAGCTTAGCTTCTTTTGGTCAA 59.851 38.462 13.44 0.00 40.44 3.18
819 856 6.372659 TCATAGCTTAGCTTCTTTTGGTCAAG 59.627 38.462 13.44 0.00 40.44 3.02
820 857 4.464947 AGCTTAGCTTCTTTTGGTCAAGT 58.535 39.130 0.00 0.00 33.89 3.16
821 858 5.621193 AGCTTAGCTTCTTTTGGTCAAGTA 58.379 37.500 0.00 0.00 33.89 2.24
822 859 5.703130 AGCTTAGCTTCTTTTGGTCAAGTAG 59.297 40.000 0.00 0.00 33.89 2.57
823 860 5.701290 GCTTAGCTTCTTTTGGTCAAGTAGA 59.299 40.000 0.00 0.00 0.00 2.59
824 861 6.204882 GCTTAGCTTCTTTTGGTCAAGTAGAA 59.795 38.462 0.00 8.80 0.00 2.10
825 862 7.572168 GCTTAGCTTCTTTTGGTCAAGTAGAAG 60.572 40.741 20.81 20.81 40.27 2.85
826 863 4.788690 GCTTCTTTTGGTCAAGTAGAAGC 58.211 43.478 27.02 27.02 46.64 3.86
828 865 6.377327 CTTCTTTTGGTCAAGTAGAAGCAA 57.623 37.500 16.89 0.00 35.81 3.91
829 866 6.377327 TTCTTTTGGTCAAGTAGAAGCAAG 57.623 37.500 0.00 0.00 34.68 4.01
830 867 5.680619 TCTTTTGGTCAAGTAGAAGCAAGA 58.319 37.500 0.00 0.00 34.68 3.02
831 868 6.119536 TCTTTTGGTCAAGTAGAAGCAAGAA 58.880 36.000 0.00 0.00 34.68 2.52
832 869 5.751243 TTTGGTCAAGTAGAAGCAAGAAC 57.249 39.130 0.00 0.00 34.68 3.01
833 870 3.390135 TGGTCAAGTAGAAGCAAGAACG 58.610 45.455 0.00 0.00 0.00 3.95
834 871 2.737252 GGTCAAGTAGAAGCAAGAACGG 59.263 50.000 0.00 0.00 0.00 4.44
835 872 2.157863 GTCAAGTAGAAGCAAGAACGGC 59.842 50.000 0.00 0.00 0.00 5.68
836 873 2.143122 CAAGTAGAAGCAAGAACGGCA 58.857 47.619 0.00 0.00 0.00 5.69
837 874 2.086054 AGTAGAAGCAAGAACGGCAG 57.914 50.000 0.00 0.00 0.00 4.85
838 875 0.444260 GTAGAAGCAAGAACGGCAGC 59.556 55.000 0.00 0.00 0.00 5.25
839 876 0.034756 TAGAAGCAAGAACGGCAGCA 59.965 50.000 0.00 0.00 0.00 4.41
840 877 1.081840 GAAGCAAGAACGGCAGCAC 60.082 57.895 0.00 0.00 0.00 4.40
841 878 1.785041 GAAGCAAGAACGGCAGCACA 61.785 55.000 0.00 0.00 0.00 4.57
842 879 2.050985 GCAAGAACGGCAGCACAC 60.051 61.111 0.00 0.00 0.00 3.82
843 880 2.639286 CAAGAACGGCAGCACACC 59.361 61.111 0.00 0.00 0.00 4.16
853 890 0.034089 GCAGCACACCTTTCCCCTAT 60.034 55.000 0.00 0.00 0.00 2.57
904 943 2.307768 AGGCGATTTCGATCACCTCTA 58.692 47.619 3.77 0.00 43.02 2.43
913 953 4.720649 TCGATCACCTCTAAGTTCCAAG 57.279 45.455 0.00 0.00 0.00 3.61
1129 1179 6.936335 TGAAGAGTTTGCTGATGTTGAGATTA 59.064 34.615 0.00 0.00 0.00 1.75
1202 1253 8.207545 TGCTAGGGTTCATACAAACAAAAATTT 58.792 29.630 0.00 0.00 0.00 1.82
1358 1412 2.081462 GGGTCCATGGTTGTTTCGTAG 58.919 52.381 12.58 0.00 0.00 3.51
1429 1483 3.435601 GGTAGAATTCCATCACCTGCCAT 60.436 47.826 0.65 0.00 31.28 4.40
1453 1507 1.069049 GGCTGCAAATCCACAAGTTGT 59.931 47.619 1.64 1.64 35.40 3.32
1518 1572 7.809238 TGAAGAAATCAGGTGAGATTATGGAT 58.191 34.615 0.00 0.00 37.24 3.41
1557 1611 6.206829 GGAATACAAGGGGTGATTACATAAGC 59.793 42.308 0.00 0.00 0.00 3.09
1566 1620 4.189231 GTGATTACATAAGCGTGAGGGTT 58.811 43.478 0.00 0.00 40.10 4.11
1687 1743 5.366482 TTGTAAGCTATGTGGCCTCATTA 57.634 39.130 24.41 9.70 0.00 1.90
1999 2058 0.676736 CTAACTCCCGAGATGCCCTC 59.323 60.000 0.00 0.00 38.55 4.30
2136 2195 2.764572 AGGACCAAAACGAGATATCGGT 59.235 45.455 15.07 4.09 37.45 4.69
2191 2250 2.842208 TGTTTTGTCTTGGAACTGCG 57.158 45.000 0.00 0.00 0.00 5.18
2252 2634 3.339141 CCCAAGCTAGTCTTCCTTTGTC 58.661 50.000 0.00 0.00 31.27 3.18
2342 2724 3.578282 TGTCAGTAGTGATGGAAGAAGCA 59.422 43.478 2.99 0.00 34.36 3.91
2348 2730 0.914644 TGATGGAAGAAGCAGAGGGG 59.085 55.000 0.00 0.00 0.00 4.79
2361 2743 2.814097 GCAGAGGGGTTGCTTTGTTCTA 60.814 50.000 0.00 0.00 38.51 2.10
2422 2804 5.957798 AGTAGGTTCATTGACGTTCGAATA 58.042 37.500 0.00 0.00 0.00 1.75
2625 3009 1.148310 CGAGCGGAGACACAAATGTT 58.852 50.000 0.00 0.00 39.95 2.71
2667 3051 2.706339 ACATGTGAGCTTGAGGATCC 57.294 50.000 2.48 2.48 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.397482 TGCCATGGTGTTATTTTTGTGC 58.603 40.909 14.67 0.00 0.00 4.57
1 2 6.427547 AGAATTGCCATGGTGTTATTTTTGTG 59.572 34.615 14.67 0.00 0.00 3.33
2 3 6.532826 AGAATTGCCATGGTGTTATTTTTGT 58.467 32.000 14.67 0.00 0.00 2.83
3 4 7.818930 AGTAGAATTGCCATGGTGTTATTTTTG 59.181 33.333 14.67 0.00 0.00 2.44
4 5 7.818930 CAGTAGAATTGCCATGGTGTTATTTTT 59.181 33.333 14.67 4.24 0.00 1.94
5 6 7.178274 TCAGTAGAATTGCCATGGTGTTATTTT 59.822 33.333 14.67 6.16 0.00 1.82
6 7 6.663093 TCAGTAGAATTGCCATGGTGTTATTT 59.337 34.615 14.67 0.00 0.00 1.40
7 8 6.186957 TCAGTAGAATTGCCATGGTGTTATT 58.813 36.000 14.67 7.92 0.00 1.40
8 9 5.754782 TCAGTAGAATTGCCATGGTGTTAT 58.245 37.500 14.67 5.99 0.00 1.89
9 10 5.172687 TCAGTAGAATTGCCATGGTGTTA 57.827 39.130 14.67 0.00 0.00 2.41
10 11 4.032960 TCAGTAGAATTGCCATGGTGTT 57.967 40.909 14.67 5.86 0.00 3.32
11 12 3.719268 TCAGTAGAATTGCCATGGTGT 57.281 42.857 14.67 0.00 0.00 4.16
12 13 5.163513 GTTTTCAGTAGAATTGCCATGGTG 58.836 41.667 14.67 0.00 32.89 4.17
13 14 4.832266 TGTTTTCAGTAGAATTGCCATGGT 59.168 37.500 14.67 0.00 32.89 3.55
14 15 5.389859 TGTTTTCAGTAGAATTGCCATGG 57.610 39.130 7.63 7.63 32.89 3.66
15 16 5.343058 CGTTGTTTTCAGTAGAATTGCCATG 59.657 40.000 0.00 0.00 32.89 3.66
16 17 5.009610 ACGTTGTTTTCAGTAGAATTGCCAT 59.990 36.000 0.00 0.00 32.89 4.40
17 18 4.336993 ACGTTGTTTTCAGTAGAATTGCCA 59.663 37.500 0.00 0.00 32.89 4.92
18 19 4.855531 ACGTTGTTTTCAGTAGAATTGCC 58.144 39.130 0.00 0.00 32.89 4.52
19 20 5.507077 TGACGTTGTTTTCAGTAGAATTGC 58.493 37.500 0.00 0.00 32.89 3.56
28 29 1.260561 CCGGACTGACGTTGTTTTCAG 59.739 52.381 0.00 0.00 44.19 3.02
29 30 1.292061 CCGGACTGACGTTGTTTTCA 58.708 50.000 0.00 0.00 0.00 2.69
30 31 0.584876 CCCGGACTGACGTTGTTTTC 59.415 55.000 0.73 0.00 0.00 2.29
31 32 0.107557 ACCCGGACTGACGTTGTTTT 60.108 50.000 0.73 0.00 0.00 2.43
32 33 0.107557 AACCCGGACTGACGTTGTTT 60.108 50.000 0.73 0.00 0.00 2.83
33 34 0.752054 TAACCCGGACTGACGTTGTT 59.248 50.000 0.73 0.00 33.51 2.83
34 35 0.316204 CTAACCCGGACTGACGTTGT 59.684 55.000 0.73 0.00 0.00 3.32
35 36 0.316204 ACTAACCCGGACTGACGTTG 59.684 55.000 0.73 0.00 0.00 4.10
36 37 1.000171 GAACTAACCCGGACTGACGTT 60.000 52.381 0.73 0.00 0.00 3.99
37 38 0.600057 GAACTAACCCGGACTGACGT 59.400 55.000 0.73 0.00 0.00 4.34
38 39 0.108945 GGAACTAACCCGGACTGACG 60.109 60.000 0.73 0.00 0.00 4.35
39 40 0.971386 TGGAACTAACCCGGACTGAC 59.029 55.000 0.73 0.00 0.00 3.51
40 41 1.946984 ATGGAACTAACCCGGACTGA 58.053 50.000 0.73 0.00 0.00 3.41
41 42 2.027561 TGAATGGAACTAACCCGGACTG 60.028 50.000 0.73 0.00 0.00 3.51
42 43 2.262637 TGAATGGAACTAACCCGGACT 58.737 47.619 0.73 0.00 0.00 3.85
43 44 2.773993 TGAATGGAACTAACCCGGAC 57.226 50.000 0.73 0.00 0.00 4.79
44 45 3.791953 TTTGAATGGAACTAACCCGGA 57.208 42.857 0.73 0.00 0.00 5.14
45 46 4.013728 TGATTTGAATGGAACTAACCCGG 58.986 43.478 0.00 0.00 0.00 5.73
46 47 4.096382 CCTGATTTGAATGGAACTAACCCG 59.904 45.833 0.00 0.00 0.00 5.28
47 48 4.142160 GCCTGATTTGAATGGAACTAACCC 60.142 45.833 0.00 0.00 0.00 4.11
48 49 4.462483 TGCCTGATTTGAATGGAACTAACC 59.538 41.667 0.00 0.00 0.00 2.85
49 50 5.643379 TGCCTGATTTGAATGGAACTAAC 57.357 39.130 0.00 0.00 0.00 2.34
50 51 5.774690 ACTTGCCTGATTTGAATGGAACTAA 59.225 36.000 0.00 0.00 0.00 2.24
51 52 5.324409 ACTTGCCTGATTTGAATGGAACTA 58.676 37.500 0.00 0.00 0.00 2.24
52 53 4.154942 ACTTGCCTGATTTGAATGGAACT 58.845 39.130 0.00 0.00 0.00 3.01
53 54 4.525912 ACTTGCCTGATTTGAATGGAAC 57.474 40.909 0.00 0.00 0.00 3.62
54 55 6.009589 TCTAACTTGCCTGATTTGAATGGAA 58.990 36.000 0.00 0.00 0.00 3.53
55 56 5.569355 TCTAACTTGCCTGATTTGAATGGA 58.431 37.500 0.00 0.00 0.00 3.41
56 57 5.416952 ACTCTAACTTGCCTGATTTGAATGG 59.583 40.000 0.00 0.00 0.00 3.16
57 58 6.404074 GGACTCTAACTTGCCTGATTTGAATG 60.404 42.308 0.00 0.00 0.00 2.67
58 59 5.649831 GGACTCTAACTTGCCTGATTTGAAT 59.350 40.000 0.00 0.00 0.00 2.57
59 60 5.003804 GGACTCTAACTTGCCTGATTTGAA 58.996 41.667 0.00 0.00 0.00 2.69
60 61 4.041567 TGGACTCTAACTTGCCTGATTTGA 59.958 41.667 0.00 0.00 0.00 2.69
61 62 4.326826 TGGACTCTAACTTGCCTGATTTG 58.673 43.478 0.00 0.00 0.00 2.32
62 63 4.640771 TGGACTCTAACTTGCCTGATTT 57.359 40.909 0.00 0.00 0.00 2.17
63 64 4.640771 TTGGACTCTAACTTGCCTGATT 57.359 40.909 0.00 0.00 0.00 2.57
64 65 4.640771 TTTGGACTCTAACTTGCCTGAT 57.359 40.909 0.00 0.00 0.00 2.90
65 66 4.134563 GTTTTGGACTCTAACTTGCCTGA 58.865 43.478 0.00 0.00 0.00 3.86
66 67 3.882888 TGTTTTGGACTCTAACTTGCCTG 59.117 43.478 0.00 0.00 0.00 4.85
67 68 4.164843 TGTTTTGGACTCTAACTTGCCT 57.835 40.909 0.00 0.00 0.00 4.75
68 69 4.261614 CCTTGTTTTGGACTCTAACTTGCC 60.262 45.833 0.00 0.00 0.00 4.52
69 70 4.261614 CCCTTGTTTTGGACTCTAACTTGC 60.262 45.833 0.00 0.00 0.00 4.01
70 71 4.261614 GCCCTTGTTTTGGACTCTAACTTG 60.262 45.833 0.00 0.00 0.00 3.16
71 72 3.889538 GCCCTTGTTTTGGACTCTAACTT 59.110 43.478 0.00 0.00 0.00 2.66
72 73 3.117663 TGCCCTTGTTTTGGACTCTAACT 60.118 43.478 0.00 0.00 0.00 2.24
73 74 3.219281 TGCCCTTGTTTTGGACTCTAAC 58.781 45.455 0.00 0.00 0.00 2.34
74 75 3.586470 TGCCCTTGTTTTGGACTCTAA 57.414 42.857 0.00 0.00 0.00 2.10
75 76 3.586470 TTGCCCTTGTTTTGGACTCTA 57.414 42.857 0.00 0.00 0.00 2.43
76 77 2.452600 TTGCCCTTGTTTTGGACTCT 57.547 45.000 0.00 0.00 0.00 3.24
77 78 3.118775 ACTTTTGCCCTTGTTTTGGACTC 60.119 43.478 0.00 0.00 0.00 3.36
78 79 2.837591 ACTTTTGCCCTTGTTTTGGACT 59.162 40.909 0.00 0.00 0.00 3.85
79 80 2.935849 CACTTTTGCCCTTGTTTTGGAC 59.064 45.455 0.00 0.00 0.00 4.02
80 81 2.569404 ACACTTTTGCCCTTGTTTTGGA 59.431 40.909 0.00 0.00 0.00 3.53
81 82 2.984562 ACACTTTTGCCCTTGTTTTGG 58.015 42.857 0.00 0.00 0.00 3.28
82 83 4.379290 CCAAACACTTTTGCCCTTGTTTTG 60.379 41.667 0.00 0.00 39.56 2.44
83 84 3.755905 CCAAACACTTTTGCCCTTGTTTT 59.244 39.130 0.00 0.00 39.56 2.43
84 85 3.008485 TCCAAACACTTTTGCCCTTGTTT 59.992 39.130 0.00 0.00 41.69 2.83
85 86 2.569404 TCCAAACACTTTTGCCCTTGTT 59.431 40.909 0.00 0.00 40.84 2.83
86 87 2.183679 TCCAAACACTTTTGCCCTTGT 58.816 42.857 0.00 0.00 40.84 3.16
87 88 2.977772 TCCAAACACTTTTGCCCTTG 57.022 45.000 0.00 0.00 40.84 3.61
88 89 3.990959 TTTCCAAACACTTTTGCCCTT 57.009 38.095 0.00 0.00 40.84 3.95
89 90 3.263170 ACTTTTCCAAACACTTTTGCCCT 59.737 39.130 0.00 0.00 40.84 5.19
90 91 3.605634 ACTTTTCCAAACACTTTTGCCC 58.394 40.909 0.00 0.00 40.84 5.36
91 92 5.656480 TCTACTTTTCCAAACACTTTTGCC 58.344 37.500 0.00 0.00 40.84 4.52
92 93 7.112984 CGTATCTACTTTTCCAAACACTTTTGC 59.887 37.037 0.00 0.00 40.84 3.68
93 94 8.339714 TCGTATCTACTTTTCCAAACACTTTTG 58.660 33.333 0.00 0.00 41.71 2.44
94 95 8.441312 TCGTATCTACTTTTCCAAACACTTTT 57.559 30.769 0.00 0.00 0.00 2.27
95 96 8.504005 CATCGTATCTACTTTTCCAAACACTTT 58.496 33.333 0.00 0.00 0.00 2.66
96 97 7.119262 CCATCGTATCTACTTTTCCAAACACTT 59.881 37.037 0.00 0.00 0.00 3.16
97 98 6.594159 CCATCGTATCTACTTTTCCAAACACT 59.406 38.462 0.00 0.00 0.00 3.55
98 99 6.592607 TCCATCGTATCTACTTTTCCAAACAC 59.407 38.462 0.00 0.00 0.00 3.32
99 100 6.703319 TCCATCGTATCTACTTTTCCAAACA 58.297 36.000 0.00 0.00 0.00 2.83
100 101 7.039882 TCTCCATCGTATCTACTTTTCCAAAC 58.960 38.462 0.00 0.00 0.00 2.93
101 102 7.177832 TCTCCATCGTATCTACTTTTCCAAA 57.822 36.000 0.00 0.00 0.00 3.28
102 103 6.785337 TCTCCATCGTATCTACTTTTCCAA 57.215 37.500 0.00 0.00 0.00 3.53
103 104 6.323996 ACATCTCCATCGTATCTACTTTTCCA 59.676 38.462 0.00 0.00 0.00 3.53
104 105 6.750148 ACATCTCCATCGTATCTACTTTTCC 58.250 40.000 0.00 0.00 0.00 3.13
105 106 9.562583 GATACATCTCCATCGTATCTACTTTTC 57.437 37.037 0.00 0.00 38.84 2.29
106 107 9.078990 TGATACATCTCCATCGTATCTACTTTT 57.921 33.333 9.46 0.00 41.27 2.27
107 108 8.637196 TGATACATCTCCATCGTATCTACTTT 57.363 34.615 9.46 0.00 41.27 2.66
108 109 8.516234 GTTGATACATCTCCATCGTATCTACTT 58.484 37.037 12.79 0.00 41.25 2.24
109 110 7.665974 TGTTGATACATCTCCATCGTATCTACT 59.334 37.037 17.67 0.00 43.06 2.57
110 111 7.751348 GTGTTGATACATCTCCATCGTATCTAC 59.249 40.741 13.03 13.03 43.00 2.59
111 112 7.447238 TGTGTTGATACATCTCCATCGTATCTA 59.553 37.037 9.46 0.90 41.27 1.98
112 113 6.265422 TGTGTTGATACATCTCCATCGTATCT 59.735 38.462 9.46 0.00 41.27 1.98
113 114 6.363626 GTGTGTTGATACATCTCCATCGTATC 59.636 42.308 0.00 0.00 41.14 2.24
114 115 6.216569 GTGTGTTGATACATCTCCATCGTAT 58.783 40.000 0.00 0.00 36.50 3.06
115 116 5.451381 GGTGTGTTGATACATCTCCATCGTA 60.451 44.000 0.00 0.00 36.50 3.43
116 117 4.433615 GTGTGTTGATACATCTCCATCGT 58.566 43.478 0.00 0.00 36.50 3.73
117 118 3.804325 GGTGTGTTGATACATCTCCATCG 59.196 47.826 0.00 0.00 36.50 3.84
118 119 4.769688 TGGTGTGTTGATACATCTCCATC 58.230 43.478 0.00 0.00 36.50 3.51
119 120 4.774124 CTGGTGTGTTGATACATCTCCAT 58.226 43.478 0.00 0.00 36.50 3.41
120 121 3.619733 GCTGGTGTGTTGATACATCTCCA 60.620 47.826 0.00 0.00 36.50 3.86
121 122 2.939103 GCTGGTGTGTTGATACATCTCC 59.061 50.000 0.00 0.00 36.50 3.71
122 123 2.939103 GGCTGGTGTGTTGATACATCTC 59.061 50.000 0.00 0.00 36.50 2.75
123 124 2.356125 GGGCTGGTGTGTTGATACATCT 60.356 50.000 0.00 0.00 36.50 2.90
124 125 2.017049 GGGCTGGTGTGTTGATACATC 58.983 52.381 0.00 0.00 36.50 3.06
125 126 1.354031 TGGGCTGGTGTGTTGATACAT 59.646 47.619 0.00 0.00 36.50 2.29
126 127 0.767998 TGGGCTGGTGTGTTGATACA 59.232 50.000 0.00 0.00 0.00 2.29
127 128 1.904287 TTGGGCTGGTGTGTTGATAC 58.096 50.000 0.00 0.00 0.00 2.24
128 129 2.666272 TTTGGGCTGGTGTGTTGATA 57.334 45.000 0.00 0.00 0.00 2.15
129 130 1.688197 CTTTTGGGCTGGTGTGTTGAT 59.312 47.619 0.00 0.00 0.00 2.57
130 131 1.110442 CTTTTGGGCTGGTGTGTTGA 58.890 50.000 0.00 0.00 0.00 3.18
131 132 0.104671 CCTTTTGGGCTGGTGTGTTG 59.895 55.000 0.00 0.00 35.46 3.33
132 133 0.032615 TCCTTTTGGGCTGGTGTGTT 60.033 50.000 0.00 0.00 40.87 3.32
188 190 0.178813 TAGCCCTCCCCCTTTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
211 214 3.803162 GGAGGGGAAGGCAGGAGC 61.803 72.222 0.00 0.00 41.10 4.70
255 262 0.915364 GAAGGCAGGAAGGGATGTCT 59.085 55.000 0.00 0.00 31.24 3.41
257 264 1.575447 GGGAAGGCAGGAAGGGATGT 61.575 60.000 0.00 0.00 0.00 3.06
359 378 0.633835 TAGGTGGAGGAGGAGGGGAT 60.634 60.000 0.00 0.00 0.00 3.85
413 449 1.820519 CTTGGGGATCATGGTGTGTTG 59.179 52.381 0.00 0.00 0.00 3.33
414 450 1.892329 GCTTGGGGATCATGGTGTGTT 60.892 52.381 0.00 0.00 0.00 3.32
423 459 2.350895 CACACGGCTTGGGGATCA 59.649 61.111 0.00 0.00 0.00 2.92
470 506 4.566759 GCTGAGCACTACGAAAATATGACA 59.433 41.667 0.00 0.00 0.00 3.58
556 593 1.069378 CAAGACGGGCGAAGTCGTAC 61.069 60.000 2.25 0.00 42.97 3.67
560 597 2.048127 AGCAAGACGGGCGAAGTC 60.048 61.111 0.00 0.00 38.81 3.01
606 643 2.623718 CGTTCAGCACGCGTTCAA 59.376 55.556 10.22 0.00 43.37 2.69
690 727 6.411376 TCATCACGTGTTGGGACTTATTATT 58.589 36.000 22.84 0.00 0.00 1.40
691 728 5.984725 TCATCACGTGTTGGGACTTATTAT 58.015 37.500 22.84 0.00 0.00 1.28
692 729 5.408880 TCATCACGTGTTGGGACTTATTA 57.591 39.130 22.84 1.53 0.00 0.98
693 730 4.280436 TCATCACGTGTTGGGACTTATT 57.720 40.909 22.84 0.00 0.00 1.40
694 731 3.973206 TCATCACGTGTTGGGACTTAT 57.027 42.857 22.84 1.08 0.00 1.73
695 732 3.973206 ATCATCACGTGTTGGGACTTA 57.027 42.857 22.84 6.37 0.00 2.24
696 733 2.859165 ATCATCACGTGTTGGGACTT 57.141 45.000 22.84 4.55 0.00 3.01
697 734 2.832129 ACTATCATCACGTGTTGGGACT 59.168 45.455 22.84 10.52 0.00 3.85
698 735 2.930040 CACTATCATCACGTGTTGGGAC 59.070 50.000 22.84 0.00 0.00 4.46
699 736 2.829120 TCACTATCATCACGTGTTGGGA 59.171 45.455 22.84 13.41 0.00 4.37
700 737 3.245518 TCACTATCATCACGTGTTGGG 57.754 47.619 22.84 16.12 0.00 4.12
701 738 4.869861 TCATTCACTATCATCACGTGTTGG 59.130 41.667 22.84 11.89 0.00 3.77
702 739 6.091305 ACTTCATTCACTATCATCACGTGTTG 59.909 38.462 18.52 18.52 0.00 3.33
703 740 6.091305 CACTTCATTCACTATCATCACGTGTT 59.909 38.462 16.51 3.97 0.00 3.32
704 741 5.578336 CACTTCATTCACTATCATCACGTGT 59.422 40.000 16.51 0.00 0.00 4.49
705 742 5.807011 TCACTTCATTCACTATCATCACGTG 59.193 40.000 9.94 9.94 0.00 4.49
706 743 5.965922 TCACTTCATTCACTATCATCACGT 58.034 37.500 0.00 0.00 0.00 4.49
707 744 5.461407 CCTCACTTCATTCACTATCATCACG 59.539 44.000 0.00 0.00 0.00 4.35
708 745 6.577103 TCCTCACTTCATTCACTATCATCAC 58.423 40.000 0.00 0.00 0.00 3.06
709 746 6.608808 TCTCCTCACTTCATTCACTATCATCA 59.391 38.462 0.00 0.00 0.00 3.07
710 747 6.922957 GTCTCCTCACTTCATTCACTATCATC 59.077 42.308 0.00 0.00 0.00 2.92
711 748 6.610830 AGTCTCCTCACTTCATTCACTATCAT 59.389 38.462 0.00 0.00 0.00 2.45
712 749 5.954752 AGTCTCCTCACTTCATTCACTATCA 59.045 40.000 0.00 0.00 0.00 2.15
713 750 6.463995 AGTCTCCTCACTTCATTCACTATC 57.536 41.667 0.00 0.00 0.00 2.08
714 751 6.865834 AAGTCTCCTCACTTCATTCACTAT 57.134 37.500 0.00 0.00 30.25 2.12
715 752 6.672266 AAAGTCTCCTCACTTCATTCACTA 57.328 37.500 0.00 0.00 35.45 2.74
716 753 5.559148 AAAGTCTCCTCACTTCATTCACT 57.441 39.130 0.00 0.00 35.45 3.41
717 754 6.370166 CCTAAAAGTCTCCTCACTTCATTCAC 59.630 42.308 0.00 0.00 35.45 3.18
718 755 6.043243 ACCTAAAAGTCTCCTCACTTCATTCA 59.957 38.462 0.00 0.00 35.45 2.57
719 756 6.370166 CACCTAAAAGTCTCCTCACTTCATTC 59.630 42.308 0.00 0.00 35.45 2.67
720 757 6.043243 TCACCTAAAAGTCTCCTCACTTCATT 59.957 38.462 0.00 0.00 35.45 2.57
721 758 5.544176 TCACCTAAAAGTCTCCTCACTTCAT 59.456 40.000 0.00 0.00 35.45 2.57
722 759 4.899457 TCACCTAAAAGTCTCCTCACTTCA 59.101 41.667 0.00 0.00 35.45 3.02
723 760 5.470047 TCACCTAAAAGTCTCCTCACTTC 57.530 43.478 0.00 0.00 35.45 3.01
724 761 5.888982 TTCACCTAAAAGTCTCCTCACTT 57.111 39.130 0.00 0.00 38.30 3.16
725 762 5.221742 CCTTTCACCTAAAAGTCTCCTCACT 60.222 44.000 0.00 0.00 34.99 3.41
726 763 4.998033 CCTTTCACCTAAAAGTCTCCTCAC 59.002 45.833 0.00 0.00 34.99 3.51
727 764 4.041691 CCCTTTCACCTAAAAGTCTCCTCA 59.958 45.833 0.00 0.00 34.99 3.86
728 765 4.286291 TCCCTTTCACCTAAAAGTCTCCTC 59.714 45.833 0.00 0.00 34.99 3.71
729 766 4.240323 TCCCTTTCACCTAAAAGTCTCCT 58.760 43.478 0.00 0.00 34.99 3.69
730 767 4.635699 TCCCTTTCACCTAAAAGTCTCC 57.364 45.455 0.00 0.00 34.99 3.71
731 768 7.395617 AGTTATCCCTTTCACCTAAAAGTCTC 58.604 38.462 0.00 0.00 34.99 3.36
732 769 7.237887 AGAGTTATCCCTTTCACCTAAAAGTCT 59.762 37.037 0.00 0.00 34.99 3.24
733 770 7.395617 AGAGTTATCCCTTTCACCTAAAAGTC 58.604 38.462 0.00 0.00 34.99 3.01
734 771 7.331089 AGAGTTATCCCTTTCACCTAAAAGT 57.669 36.000 0.00 0.00 34.99 2.66
735 772 9.907229 AATAGAGTTATCCCTTTCACCTAAAAG 57.093 33.333 0.00 0.00 36.26 2.27
736 773 9.681062 CAATAGAGTTATCCCTTTCACCTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
737 774 7.773690 GCAATAGAGTTATCCCTTTCACCTAAA 59.226 37.037 0.00 0.00 0.00 1.85
738 775 7.127339 AGCAATAGAGTTATCCCTTTCACCTAA 59.873 37.037 0.00 0.00 0.00 2.69
739 776 6.615726 AGCAATAGAGTTATCCCTTTCACCTA 59.384 38.462 0.00 0.00 0.00 3.08
740 777 5.430089 AGCAATAGAGTTATCCCTTTCACCT 59.570 40.000 0.00 0.00 0.00 4.00
741 778 5.685728 AGCAATAGAGTTATCCCTTTCACC 58.314 41.667 0.00 0.00 0.00 4.02
742 779 6.349300 TGAGCAATAGAGTTATCCCTTTCAC 58.651 40.000 0.00 0.00 0.00 3.18
743 780 6.560003 TGAGCAATAGAGTTATCCCTTTCA 57.440 37.500 0.00 0.00 0.00 2.69
744 781 9.732130 AATATGAGCAATAGAGTTATCCCTTTC 57.268 33.333 0.00 0.00 0.00 2.62
747 784 9.554053 ACTAATATGAGCAATAGAGTTATCCCT 57.446 33.333 0.00 0.00 0.00 4.20
752 789 9.309224 TGCCTACTAATATGAGCAATAGAGTTA 57.691 33.333 0.00 0.00 0.00 2.24
753 790 8.091449 GTGCCTACTAATATGAGCAATAGAGTT 58.909 37.037 0.00 0.00 31.03 3.01
754 791 7.310113 GGTGCCTACTAATATGAGCAATAGAGT 60.310 40.741 0.00 0.00 31.03 3.24
755 792 7.038659 GGTGCCTACTAATATGAGCAATAGAG 58.961 42.308 0.00 0.00 31.03 2.43
756 793 6.496911 TGGTGCCTACTAATATGAGCAATAGA 59.503 38.462 0.00 0.00 31.03 1.98
757 794 6.701340 TGGTGCCTACTAATATGAGCAATAG 58.299 40.000 0.00 0.00 31.03 1.73
758 795 6.680148 TGGTGCCTACTAATATGAGCAATA 57.320 37.500 0.00 0.00 31.03 1.90
759 796 5.567037 TGGTGCCTACTAATATGAGCAAT 57.433 39.130 0.00 0.00 31.03 3.56
760 797 5.366482 TTGGTGCCTACTAATATGAGCAA 57.634 39.130 0.00 0.00 31.03 3.91
761 798 5.366482 TTTGGTGCCTACTAATATGAGCA 57.634 39.130 0.00 0.00 0.00 4.26
762 799 6.263168 ACATTTTGGTGCCTACTAATATGAGC 59.737 38.462 11.59 0.00 38.24 4.26
763 800 7.498900 TGACATTTTGGTGCCTACTAATATGAG 59.501 37.037 11.59 0.00 38.24 2.90
764 801 7.342581 TGACATTTTGGTGCCTACTAATATGA 58.657 34.615 11.59 0.00 38.24 2.15
765 802 7.566760 TGACATTTTGGTGCCTACTAATATG 57.433 36.000 0.00 0.00 40.20 1.78
766 803 8.766994 AATGACATTTTGGTGCCTACTAATAT 57.233 30.769 0.00 0.00 0.00 1.28
767 804 9.337396 CTAATGACATTTTGGTGCCTACTAATA 57.663 33.333 5.89 0.00 0.00 0.98
768 805 7.834181 ACTAATGACATTTTGGTGCCTACTAAT 59.166 33.333 5.89 0.00 0.00 1.73
769 806 7.172342 ACTAATGACATTTTGGTGCCTACTAA 58.828 34.615 5.89 0.00 0.00 2.24
770 807 6.717289 ACTAATGACATTTTGGTGCCTACTA 58.283 36.000 5.89 0.00 0.00 1.82
771 808 5.570320 ACTAATGACATTTTGGTGCCTACT 58.430 37.500 5.89 0.00 0.00 2.57
772 809 5.414454 TGACTAATGACATTTTGGTGCCTAC 59.586 40.000 5.89 0.00 0.00 3.18
773 810 5.565509 TGACTAATGACATTTTGGTGCCTA 58.434 37.500 5.89 0.00 0.00 3.93
774 811 4.406456 TGACTAATGACATTTTGGTGCCT 58.594 39.130 5.89 0.00 0.00 4.75
775 812 4.782019 TGACTAATGACATTTTGGTGCC 57.218 40.909 5.89 0.00 0.00 5.01
776 813 5.973565 GCTATGACTAATGACATTTTGGTGC 59.026 40.000 5.89 0.17 31.63 5.01
777 814 7.325660 AGCTATGACTAATGACATTTTGGTG 57.674 36.000 5.89 0.00 31.63 4.17
778 815 7.944729 AAGCTATGACTAATGACATTTTGGT 57.055 32.000 5.89 3.70 31.63 3.67
779 816 8.072567 GCTAAGCTATGACTAATGACATTTTGG 58.927 37.037 5.89 0.54 31.63 3.28
780 817 8.834465 AGCTAAGCTATGACTAATGACATTTTG 58.166 33.333 5.89 2.94 36.99 2.44
781 818 8.970859 AGCTAAGCTATGACTAATGACATTTT 57.029 30.769 5.89 0.00 36.99 1.82
782 819 8.970859 AAGCTAAGCTATGACTAATGACATTT 57.029 30.769 5.89 0.00 38.25 2.32
783 820 8.428063 AGAAGCTAAGCTATGACTAATGACATT 58.572 33.333 5.87 5.87 38.25 2.71
784 821 7.961351 AGAAGCTAAGCTATGACTAATGACAT 58.039 34.615 0.00 0.00 38.25 3.06
785 822 7.353414 AGAAGCTAAGCTATGACTAATGACA 57.647 36.000 0.00 0.00 38.25 3.58
786 823 8.655651 AAAGAAGCTAAGCTATGACTAATGAC 57.344 34.615 0.00 0.00 38.25 3.06
787 824 9.102757 CAAAAGAAGCTAAGCTATGACTAATGA 57.897 33.333 0.00 0.00 38.25 2.57
788 825 8.341173 CCAAAAGAAGCTAAGCTATGACTAATG 58.659 37.037 0.00 0.00 38.25 1.90
789 826 8.049721 ACCAAAAGAAGCTAAGCTATGACTAAT 58.950 33.333 0.00 0.00 38.25 1.73
790 827 7.394816 ACCAAAAGAAGCTAAGCTATGACTAA 58.605 34.615 0.00 0.00 38.25 2.24
791 828 6.947464 ACCAAAAGAAGCTAAGCTATGACTA 58.053 36.000 0.00 0.00 38.25 2.59
792 829 5.810095 ACCAAAAGAAGCTAAGCTATGACT 58.190 37.500 0.00 0.00 38.25 3.41
793 830 5.643777 TGACCAAAAGAAGCTAAGCTATGAC 59.356 40.000 0.00 0.00 38.25 3.06
794 831 5.804639 TGACCAAAAGAAGCTAAGCTATGA 58.195 37.500 0.00 0.00 38.25 2.15
795 832 6.150140 ACTTGACCAAAAGAAGCTAAGCTATG 59.850 38.462 0.00 0.00 38.25 2.23
796 833 6.241645 ACTTGACCAAAAGAAGCTAAGCTAT 58.758 36.000 0.00 0.00 38.25 2.97
797 834 5.621193 ACTTGACCAAAAGAAGCTAAGCTA 58.379 37.500 0.00 0.00 38.25 3.32
798 835 4.464947 ACTTGACCAAAAGAAGCTAAGCT 58.535 39.130 0.00 0.00 42.56 3.74
799 836 4.837896 ACTTGACCAAAAGAAGCTAAGC 57.162 40.909 0.00 0.00 0.00 3.09
800 837 7.730364 TTCTACTTGACCAAAAGAAGCTAAG 57.270 36.000 0.00 0.00 0.00 2.18
801 838 7.730364 CTTCTACTTGACCAAAAGAAGCTAA 57.270 36.000 15.51 0.00 35.54 3.09
804 841 4.788690 GCTTCTACTTGACCAAAAGAAGC 58.211 43.478 26.22 26.22 46.83 3.86
805 842 6.260936 TCTTGCTTCTACTTGACCAAAAGAAG 59.739 38.462 19.69 19.69 40.20 2.85
806 843 6.119536 TCTTGCTTCTACTTGACCAAAAGAA 58.880 36.000 0.00 0.00 0.00 2.52
807 844 5.680619 TCTTGCTTCTACTTGACCAAAAGA 58.319 37.500 0.00 0.00 0.00 2.52
808 845 6.202226 GTTCTTGCTTCTACTTGACCAAAAG 58.798 40.000 0.00 0.00 0.00 2.27
809 846 5.220777 CGTTCTTGCTTCTACTTGACCAAAA 60.221 40.000 0.00 0.00 0.00 2.44
810 847 4.272504 CGTTCTTGCTTCTACTTGACCAAA 59.727 41.667 0.00 0.00 0.00 3.28
811 848 3.807622 CGTTCTTGCTTCTACTTGACCAA 59.192 43.478 0.00 0.00 0.00 3.67
812 849 3.390135 CGTTCTTGCTTCTACTTGACCA 58.610 45.455 0.00 0.00 0.00 4.02
813 850 2.737252 CCGTTCTTGCTTCTACTTGACC 59.263 50.000 0.00 0.00 0.00 4.02
814 851 2.157863 GCCGTTCTTGCTTCTACTTGAC 59.842 50.000 0.00 0.00 0.00 3.18
815 852 2.224185 TGCCGTTCTTGCTTCTACTTGA 60.224 45.455 0.00 0.00 0.00 3.02
816 853 2.143122 TGCCGTTCTTGCTTCTACTTG 58.857 47.619 0.00 0.00 0.00 3.16
817 854 2.417719 CTGCCGTTCTTGCTTCTACTT 58.582 47.619 0.00 0.00 0.00 2.24
818 855 1.941668 GCTGCCGTTCTTGCTTCTACT 60.942 52.381 0.00 0.00 0.00 2.57
819 856 0.444260 GCTGCCGTTCTTGCTTCTAC 59.556 55.000 0.00 0.00 0.00 2.59
820 857 0.034756 TGCTGCCGTTCTTGCTTCTA 59.965 50.000 0.00 0.00 0.00 2.10
821 858 1.227943 TGCTGCCGTTCTTGCTTCT 60.228 52.632 0.00 0.00 0.00 2.85
822 859 1.081840 GTGCTGCCGTTCTTGCTTC 60.082 57.895 0.00 0.00 0.00 3.86
823 860 1.823470 TGTGCTGCCGTTCTTGCTT 60.823 52.632 0.00 0.00 0.00 3.91
824 861 2.203195 TGTGCTGCCGTTCTTGCT 60.203 55.556 0.00 0.00 0.00 3.91
825 862 2.050985 GTGTGCTGCCGTTCTTGC 60.051 61.111 0.00 0.00 0.00 4.01
826 863 1.447317 AAGGTGTGCTGCCGTTCTTG 61.447 55.000 0.00 0.00 0.00 3.02
827 864 0.751643 AAAGGTGTGCTGCCGTTCTT 60.752 50.000 0.00 0.00 0.00 2.52
828 865 1.152963 AAAGGTGTGCTGCCGTTCT 60.153 52.632 0.00 0.00 0.00 3.01
829 866 1.282875 GAAAGGTGTGCTGCCGTTC 59.717 57.895 0.00 5.22 37.34 3.95
830 867 2.193536 GGAAAGGTGTGCTGCCGTT 61.194 57.895 0.00 0.00 0.00 4.44
831 868 2.594592 GGAAAGGTGTGCTGCCGT 60.595 61.111 0.00 0.00 0.00 5.68
832 869 3.365265 GGGAAAGGTGTGCTGCCG 61.365 66.667 0.00 0.00 0.00 5.69
833 870 2.137177 TAGGGGAAAGGTGTGCTGCC 62.137 60.000 0.00 0.00 0.00 4.85
834 871 0.034089 ATAGGGGAAAGGTGTGCTGC 60.034 55.000 0.00 0.00 0.00 5.25
835 872 1.755179 CATAGGGGAAAGGTGTGCTG 58.245 55.000 0.00 0.00 0.00 4.41
836 873 0.034089 GCATAGGGGAAAGGTGTGCT 60.034 55.000 0.00 0.00 0.00 4.40
837 874 1.037579 GGCATAGGGGAAAGGTGTGC 61.038 60.000 0.00 0.00 0.00 4.57
838 875 0.395724 GGGCATAGGGGAAAGGTGTG 60.396 60.000 0.00 0.00 0.00 3.82
839 876 1.921869 CGGGCATAGGGGAAAGGTGT 61.922 60.000 0.00 0.00 0.00 4.16
840 877 1.152963 CGGGCATAGGGGAAAGGTG 60.153 63.158 0.00 0.00 0.00 4.00
841 878 1.307517 TCGGGCATAGGGGAAAGGT 60.308 57.895 0.00 0.00 0.00 3.50
842 879 1.054406 TCTCGGGCATAGGGGAAAGG 61.054 60.000 0.00 0.00 0.00 3.11
843 880 1.059913 ATCTCGGGCATAGGGGAAAG 58.940 55.000 0.00 0.00 0.00 2.62
904 943 1.134189 GGGTATAGGCGCTTGGAACTT 60.134 52.381 7.64 0.00 0.00 2.66
913 953 2.748350 GGGGAAGGGTATAGGCGC 59.252 66.667 0.00 0.00 0.00 6.53
1048 1098 2.125552 CGATCTTGCAGCCACGGA 60.126 61.111 0.00 0.00 0.00 4.69
1129 1179 1.482593 GATCACAGGGTCGTCCTCATT 59.517 52.381 0.00 0.00 46.12 2.57
1285 1336 1.606668 GGATGCTTGGACGACAAAACA 59.393 47.619 0.00 0.00 38.91 2.83
1358 1412 1.982073 GCACAAGAGCACCGCCATAC 61.982 60.000 0.00 0.00 0.00 2.39
1429 1483 2.170187 ACTTGTGGATTTGCAGCCAAAA 59.830 40.909 6.60 7.07 43.58 2.44
1453 1507 0.109532 TGTTTGCAGAATGGGTCCGA 59.890 50.000 0.00 0.00 35.86 4.55
1518 1572 5.593909 CCTTGTATTCCCATTCAAGTGCATA 59.406 40.000 0.00 0.00 36.51 3.14
1557 1611 3.997021 GGATATCATGCTTAACCCTCACG 59.003 47.826 4.83 0.00 0.00 4.35
1609 1663 0.250124 TGACGTTCCTTGGCACGAAT 60.250 50.000 17.63 0.00 39.76 3.34
1905 1963 4.495565 TCTCTCCCCAGGTGTTTTAACTA 58.504 43.478 0.00 0.00 0.00 2.24
1999 2058 0.385473 GCACCGGTTTCAATGTGTCG 60.385 55.000 2.97 0.00 0.00 4.35
2001 2060 0.667993 CAGCACCGGTTTCAATGTGT 59.332 50.000 2.97 0.00 0.00 3.72
2191 2250 1.691823 CAAAACCTCCTCCCTCCCC 59.308 63.158 0.00 0.00 0.00 4.81
2252 2634 2.234661 TGGTTGCCTCATGTCTAGTCTG 59.765 50.000 0.00 0.00 0.00 3.51
2342 2724 2.040412 CCTAGAACAAAGCAACCCCTCT 59.960 50.000 0.00 0.00 0.00 3.69
2348 2730 7.597386 AGATTTTCATCCTAGAACAAAGCAAC 58.403 34.615 0.00 0.00 0.00 4.17
2361 2743 6.773638 ACTGTAACAGTGAGATTTTCATCCT 58.226 36.000 0.00 0.00 43.63 3.24
2422 2804 2.327325 TACCAGAGCCTCCTTCAAGT 57.673 50.000 0.00 0.00 0.00 3.16
2625 3009 0.323999 TAGGCAGTCCCTGAACGCTA 60.324 55.000 0.00 0.00 45.91 4.26
2667 3051 3.787001 GGAGGCCTGAGAACCCGG 61.787 72.222 12.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.