Multiple sequence alignment - TraesCS5B01G404800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G404800 chr5B 100.000 5921 0 0 1 5921 580680606 580686526 0.000000e+00 10935.0
1 TraesCS5B01G404800 chr5B 98.319 119 2 0 567 685 580681110 580681228 6.010000e-50 209.0
2 TraesCS5B01G404800 chr5B 98.319 119 2 0 505 623 580681172 580681290 6.010000e-50 209.0
3 TraesCS5B01G404800 chr5B 96.491 57 2 0 629 685 580681110 580681166 1.760000e-15 95.3
4 TraesCS5B01G404800 chr5B 96.491 57 2 0 505 561 580681234 580681290 1.760000e-15 95.3
5 TraesCS5B01G404800 chr5B 84.127 63 6 4 5358 5419 393694146 393694205 2.300000e-04 58.4
6 TraesCS5B01G404800 chr5A 92.217 2120 81 40 733 2828 593161982 593164041 0.000000e+00 2924.0
7 TraesCS5B01G404800 chr5A 88.547 1039 68 23 4230 5253 593170705 593171707 0.000000e+00 1212.0
8 TraesCS5B01G404800 chr5A 90.459 566 28 11 3114 3674 593169435 593169979 0.000000e+00 723.0
9 TraesCS5B01G404800 chr5A 96.089 358 14 0 3879 4236 593170311 593170668 8.550000e-163 584.0
10 TraesCS5B01G404800 chr5A 90.857 350 20 4 5564 5904 593172148 593172494 5.410000e-125 459.0
11 TraesCS5B01G404800 chr5A 96.335 191 7 0 3673 3863 593170010 593170200 1.240000e-81 315.0
12 TraesCS5B01G404800 chr5A 90.805 174 14 1 2949 3120 593164183 593164356 1.280000e-56 231.0
13 TraesCS5B01G404800 chr5A 85.938 64 5 4 5358 5420 46713105 46713045 1.380000e-06 65.8
14 TraesCS5B01G404800 chr5D 92.881 1194 45 16 720 1888 473352486 473353664 0.000000e+00 1698.0
15 TraesCS5B01G404800 chr5D 92.247 1019 56 14 4214 5219 473356004 473357012 0.000000e+00 1423.0
16 TraesCS5B01G404800 chr5D 92.385 696 40 7 2989 3674 473354388 473355080 0.000000e+00 979.0
17 TraesCS5B01G404800 chr5D 93.617 564 17 7 2315 2864 473353657 473354215 0.000000e+00 824.0
18 TraesCS5B01G404800 chr5D 89.234 483 31 7 5438 5904 473357268 473357745 8.550000e-163 584.0
19 TraesCS5B01G404800 chr5D 88.036 443 40 6 49 481 473350759 473351198 4.090000e-141 512.0
20 TraesCS5B01G404800 chr5D 91.317 357 24 2 3879 4228 473355620 473355976 1.150000e-131 481.0
21 TraesCS5B01G404800 chr5D 97.630 211 5 0 3673 3883 473355111 473355321 4.360000e-96 363.0
22 TraesCS5B01G404800 chr5D 88.000 50 5 1 5360 5409 353295029 353295077 2.300000e-04 58.4
23 TraesCS5B01G404800 chr5D 100.000 30 0 0 5316 5345 473357113 473357084 8.290000e-04 56.5
24 TraesCS5B01G404800 chr3A 94.337 618 33 2 934 1550 689756639 689756023 0.000000e+00 946.0
25 TraesCS5B01G404800 chr2A 92.707 617 43 2 934 1549 269270431 269269816 0.000000e+00 889.0
26 TraesCS5B01G404800 chr2A 92.707 617 43 2 934 1549 269308205 269307590 0.000000e+00 889.0
27 TraesCS5B01G404800 chr4D 82.227 467 52 17 9 455 503585582 503585127 2.010000e-99 374.0
28 TraesCS5B01G404800 chr4D 84.821 112 9 5 623 734 93333455 93333558 8.120000e-19 106.0
29 TraesCS5B01G404800 chr4D 84.746 59 3 5 563 621 105900130 105900078 3.000000e-03 54.7
30 TraesCS5B01G404800 chr4D 100.000 28 0 0 532 559 105900105 105900078 1.100000e-02 52.8
31 TraesCS5B01G404800 chr3B 80.196 409 59 11 101 501 20564079 20564473 2.700000e-73 287.0
32 TraesCS5B01G404800 chr3B 80.800 375 44 15 123 481 9094905 9095267 9.780000e-68 268.0
33 TraesCS5B01G404800 chr3B 90.291 103 7 3 2858 2959 138269310 138269210 1.340000e-26 132.0
34 TraesCS5B01G404800 chr3B 92.941 85 6 0 2866 2950 66572269 66572353 2.240000e-24 124.0
35 TraesCS5B01G404800 chr3B 88.636 88 10 0 2864 2951 651725038 651725125 2.260000e-19 108.0
36 TraesCS5B01G404800 chr2B 81.977 344 44 11 155 481 717936990 717937332 5.850000e-70 276.0
37 TraesCS5B01G404800 chr2B 91.753 97 7 1 2866 2962 46846166 46846071 3.720000e-27 134.0
38 TraesCS5B01G404800 chr2B 94.444 36 2 0 5374 5409 528199718 528199753 8.290000e-04 56.5
39 TraesCS5B01G404800 chr2B 100.000 30 0 0 594 623 554716149 554716120 8.290000e-04 56.5
40 TraesCS5B01G404800 chr2B 100.000 30 0 0 532 561 554716149 554716120 8.290000e-04 56.5
41 TraesCS5B01G404800 chr3D 79.905 423 44 19 148 559 14123763 14124155 7.560000e-69 272.0
42 TraesCS5B01G404800 chr3D 87.097 62 3 4 5360 5419 552584621 552584679 1.380000e-06 65.8
43 TraesCS5B01G404800 chr7B 85.657 251 27 5 101 346 532119676 532119922 7.610000e-64 255.0
44 TraesCS5B01G404800 chr7B 93.617 94 5 1 2857 2950 440325696 440325604 8.000000e-29 139.0
45 TraesCS5B01G404800 chr7B 92.632 95 6 1 2865 2958 226902802 226902896 1.040000e-27 135.0
46 TraesCS5B01G404800 chr7B 87.879 99 11 1 2863 2960 487811862 487811764 1.350000e-21 115.0
47 TraesCS5B01G404800 chr7D 82.178 303 41 8 106 398 39021265 39020966 1.270000e-61 248.0
48 TraesCS5B01G404800 chr7D 87.719 57 4 2 5363 5419 591834609 591834662 4.950000e-06 63.9
49 TraesCS5B01G404800 chr7D 100.000 28 0 0 5141 5168 401145356 401145329 1.100000e-02 52.8
50 TraesCS5B01G404800 chr7A 79.456 331 57 10 32 359 39068818 39068496 2.150000e-54 224.0
51 TraesCS5B01G404800 chr7A 87.963 108 11 2 2862 2968 25645872 25645766 6.230000e-25 126.0
52 TraesCS5B01G404800 chr6D 84.255 235 24 9 174 402 114169523 114169750 3.590000e-52 217.0
53 TraesCS5B01G404800 chr6D 100.000 30 0 0 532 561 58250592 58250621 8.290000e-04 56.5
54 TraesCS5B01G404800 chr6D 100.000 30 0 0 594 623 58250592 58250621 8.290000e-04 56.5
55 TraesCS5B01G404800 chr6D 100.000 30 0 0 532 561 58417587 58417616 8.290000e-04 56.5
56 TraesCS5B01G404800 chr6D 100.000 30 0 0 594 623 58417587 58417616 8.290000e-04 56.5
57 TraesCS5B01G404800 chr1A 76.160 474 69 26 27 481 338602029 338601581 6.010000e-50 209.0
58 TraesCS5B01G404800 chr1D 95.556 90 4 0 2862 2951 477184233 477184322 1.720000e-30 145.0
59 TraesCS5B01G404800 chr1D 88.636 44 4 1 5376 5418 7586733 7586776 1.100000e-02 52.8
60 TraesCS5B01G404800 chrUn 92.784 97 6 1 2866 2961 92738908 92739004 8.000000e-29 139.0
61 TraesCS5B01G404800 chrUn 94.382 89 5 0 2863 2951 163394433 163394521 2.880000e-28 137.0
62 TraesCS5B01G404800 chrUn 94.382 89 5 0 2863 2951 325472445 325472533 2.880000e-28 137.0
63 TraesCS5B01G404800 chrUn 94.382 89 5 0 2863 2951 384522695 384522783 2.880000e-28 137.0
64 TraesCS5B01G404800 chrUn 92.632 95 7 0 2863 2957 386040336 386040242 2.880000e-28 137.0
65 TraesCS5B01G404800 chr1B 89.000 100 10 1 2865 2964 136469979 136469881 8.060000e-24 122.0
66 TraesCS5B01G404800 chr6A 86.087 115 7 8 2858 2969 97081310 97081418 1.350000e-21 115.0
67 TraesCS5B01G404800 chr2D 75.879 199 29 10 24 213 141999189 141999001 3.800000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G404800 chr5B 580680606 580686526 5920 False 10935.0 10935 100.000000 1 5921 1 chr5B.!!$F2 5920
1 TraesCS5B01G404800 chr5A 593161982 593164356 2374 False 1577.5 2924 91.511000 733 3120 2 chr5A.!!$F1 2387
2 TraesCS5B01G404800 chr5A 593169435 593172494 3059 False 658.6 1212 92.457400 3114 5904 5 chr5A.!!$F2 2790
3 TraesCS5B01G404800 chr5D 473350759 473357745 6986 False 858.0 1698 92.168375 49 5904 8 chr5D.!!$F2 5855
4 TraesCS5B01G404800 chr3A 689756023 689756639 616 True 946.0 946 94.337000 934 1550 1 chr3A.!!$R1 616
5 TraesCS5B01G404800 chr2A 269269816 269270431 615 True 889.0 889 92.707000 934 1549 1 chr2A.!!$R1 615
6 TraesCS5B01G404800 chr2A 269307590 269308205 615 True 889.0 889 92.707000 934 1549 1 chr2A.!!$R2 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.035915 AAGAAGAAGAAGAGGCCGGC 60.036 55.0 21.18 21.18 0.00 6.13 F
846 2042 0.371645 GCTCCTCGTCAATTTCAGCG 59.628 55.0 0.00 0.00 0.00 5.18 F
2112 3341 0.327924 TTCATTCCTGCGACCCATGT 59.672 50.0 0.00 0.00 0.00 3.21 F
2115 3344 0.469917 ATTCCTGCGACCCATGTAGG 59.530 55.0 0.00 0.00 40.22 3.18 F
3044 4527 0.037139 TCCACCATTACCGACAACCG 60.037 55.0 0.00 0.00 38.18 4.44 F
3143 4628 0.171903 GCCAAATGCACAGCGAGATT 59.828 50.0 0.00 0.00 40.77 2.40 F
4647 6633 0.037046 TAAAACCGAGGAAGGGCGAC 60.037 55.0 0.00 0.00 35.02 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 2644 1.697432 CCCTCGTCCCCAATGCTAATA 59.303 52.381 0.00 0.00 0.00 0.98 R
2151 3380 1.328279 TCCCGATATGAGATGCGTGT 58.672 50.000 0.00 0.00 0.00 4.49 R
3030 4513 0.167251 GCCAACGGTTGTCGGTAATG 59.833 55.000 18.73 3.06 44.45 1.90 R
3354 4841 0.179089 CCCAGCTCCGAGATCTTGTG 60.179 60.000 9.19 2.96 0.00 3.33 R
4608 6594 0.099436 CCTTTAAGCCGATGCACTGC 59.901 55.000 0.00 0.00 41.13 4.40 R
4871 6858 0.179070 GGCGACCCATTTCTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71 R
5461 7585 1.004918 CAGAACCCGTCCACTGTCC 60.005 63.158 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.352719 GTATTTGGATGGAAGATATGACGAC 57.647 40.000 0.00 0.00 0.00 4.34
25 26 3.643159 TGGATGGAAGATATGACGACG 57.357 47.619 0.00 0.00 0.00 5.12
26 27 3.219281 TGGATGGAAGATATGACGACGA 58.781 45.455 0.00 0.00 0.00 4.20
27 28 3.634910 TGGATGGAAGATATGACGACGAA 59.365 43.478 0.00 0.00 0.00 3.85
28 29 4.230657 GGATGGAAGATATGACGACGAAG 58.769 47.826 0.00 0.00 0.00 3.79
29 30 4.023107 GGATGGAAGATATGACGACGAAGA 60.023 45.833 0.00 0.00 0.00 2.87
30 31 4.976224 TGGAAGATATGACGACGAAGAA 57.024 40.909 0.00 0.00 0.00 2.52
31 32 4.921547 TGGAAGATATGACGACGAAGAAG 58.078 43.478 0.00 0.00 0.00 2.85
32 33 4.638865 TGGAAGATATGACGACGAAGAAGA 59.361 41.667 0.00 0.00 0.00 2.87
33 34 5.124936 TGGAAGATATGACGACGAAGAAGAA 59.875 40.000 0.00 0.00 0.00 2.52
34 35 5.683743 GGAAGATATGACGACGAAGAAGAAG 59.316 44.000 0.00 0.00 0.00 2.85
35 36 6.438259 AAGATATGACGACGAAGAAGAAGA 57.562 37.500 0.00 0.00 0.00 2.87
36 37 6.438259 AGATATGACGACGAAGAAGAAGAA 57.562 37.500 0.00 0.00 0.00 2.52
37 38 6.491394 AGATATGACGACGAAGAAGAAGAAG 58.509 40.000 0.00 0.00 0.00 2.85
38 39 4.768130 ATGACGACGAAGAAGAAGAAGA 57.232 40.909 0.00 0.00 0.00 2.87
39 40 4.148563 TGACGACGAAGAAGAAGAAGAG 57.851 45.455 0.00 0.00 0.00 2.85
40 41 3.058155 TGACGACGAAGAAGAAGAAGAGG 60.058 47.826 0.00 0.00 0.00 3.69
41 42 2.255316 CGACGAAGAAGAAGAAGAGGC 58.745 52.381 0.00 0.00 0.00 4.70
42 43 2.612604 GACGAAGAAGAAGAAGAGGCC 58.387 52.381 0.00 0.00 0.00 5.19
43 44 1.067495 ACGAAGAAGAAGAAGAGGCCG 60.067 52.381 0.00 0.00 0.00 6.13
44 45 1.737363 CGAAGAAGAAGAAGAGGCCGG 60.737 57.143 0.00 0.00 0.00 6.13
45 46 0.035915 AAGAAGAAGAAGAGGCCGGC 60.036 55.000 21.18 21.18 0.00 6.13
46 47 1.450491 GAAGAAGAAGAGGCCGGCC 60.450 63.158 39.29 39.29 0.00 6.13
47 48 2.185310 GAAGAAGAAGAGGCCGGCCA 62.185 60.000 45.13 0.00 38.92 5.36
48 49 1.566298 AAGAAGAAGAGGCCGGCCAT 61.566 55.000 45.13 31.33 38.92 4.40
49 50 1.077429 GAAGAAGAGGCCGGCCATT 60.077 57.895 45.13 36.97 38.92 3.16
50 51 1.077429 AAGAAGAGGCCGGCCATTC 60.077 57.895 45.13 40.69 38.92 2.67
51 52 2.876368 AAGAAGAGGCCGGCCATTCG 62.876 60.000 45.13 0.00 38.37 3.34
63 64 2.813474 CATTCGCGTTGCTCCCGA 60.813 61.111 5.77 0.00 0.00 5.14
81 82 2.353607 CGATAGTGACGAGGCGGC 60.354 66.667 0.00 0.00 34.27 6.53
94 95 3.195698 GCGGCGATGGTGAGGTTC 61.196 66.667 12.98 0.00 0.00 3.62
95 96 2.511600 CGGCGATGGTGAGGTTCC 60.512 66.667 0.00 0.00 0.00 3.62
96 97 2.668632 GGCGATGGTGAGGTTCCA 59.331 61.111 0.00 0.00 39.41 3.53
98 99 2.109126 GCGATGGTGAGGTTCCAGC 61.109 63.158 0.00 0.00 38.42 4.85
121 122 0.754957 AGCATCTCTAGGCTGAGCGT 60.755 55.000 4.63 4.63 42.19 5.07
138 139 1.618861 CGTGAGTTCTACTGGAAGCG 58.381 55.000 0.00 0.00 37.60 4.68
178 179 2.293598 AGGGGGTGAAGAATGAGGAT 57.706 50.000 0.00 0.00 0.00 3.24
180 181 1.846439 GGGGGTGAAGAATGAGGATGA 59.154 52.381 0.00 0.00 0.00 2.92
183 184 2.507471 GGGTGAAGAATGAGGATGAGGT 59.493 50.000 0.00 0.00 0.00 3.85
186 187 3.099905 TGAAGAATGAGGATGAGGTCGT 58.900 45.455 0.00 0.00 0.00 4.34
187 188 3.515502 TGAAGAATGAGGATGAGGTCGTT 59.484 43.478 0.00 0.00 0.00 3.85
219 220 0.748729 ATCCCCGTCGAGTCTGAGTC 60.749 60.000 2.29 2.29 0.00 3.36
245 247 2.359404 GGGTGACTCGGAGGAGGA 59.641 66.667 10.23 0.00 44.93 3.71
246 248 2.053277 GGGTGACTCGGAGGAGGAC 61.053 68.421 10.23 0.21 44.93 3.85
247 249 2.408241 GGTGACTCGGAGGAGGACG 61.408 68.421 10.23 0.00 44.93 4.79
248 250 1.376942 GTGACTCGGAGGAGGACGA 60.377 63.158 10.23 0.00 44.93 4.20
276 278 2.260743 GACGACCCGGACAAGGAC 59.739 66.667 0.73 0.00 0.00 3.85
284 286 0.388649 CCGGACAAGGACGAGTTCTG 60.389 60.000 0.00 0.00 0.00 3.02
304 306 2.748268 GAGCAGTTCAAGAGCTCCG 58.252 57.895 10.93 1.67 46.82 4.63
346 351 7.204604 TCGATGTAGTTCAAGTAGTTGTTTCA 58.795 34.615 10.08 5.00 34.98 2.69
348 353 6.598753 TGTAGTTCAAGTAGTTGTTTCAGC 57.401 37.500 10.08 0.00 34.98 4.26
351 356 6.846325 AGTTCAAGTAGTTGTTTCAGCTAC 57.154 37.500 10.08 13.21 44.59 3.58
360 365 6.896021 AGTTGTTTCAGCTACTAGTAGTCA 57.104 37.500 26.76 15.07 35.65 3.41
361 366 6.915349 AGTTGTTTCAGCTACTAGTAGTCAG 58.085 40.000 26.76 17.90 35.65 3.51
363 368 7.664731 AGTTGTTTCAGCTACTAGTAGTCAGTA 59.335 37.037 26.76 11.20 35.65 2.74
365 370 7.166851 TGTTTCAGCTACTAGTAGTCAGTAGT 58.833 38.462 26.76 4.96 44.84 2.73
366 371 8.316946 TGTTTCAGCTACTAGTAGTCAGTAGTA 58.683 37.037 26.76 8.86 44.84 1.82
415 425 9.617523 TTAAATTAGTAGTGGTAGCCATTTACC 57.382 33.333 8.28 0.00 42.83 2.85
423 433 6.120220 AGTGGTAGCCATTTACCTATGTTTC 58.880 40.000 4.08 0.00 42.93 2.78
433 443 8.458843 CCATTTACCTATGTTTCAATTCGAACT 58.541 33.333 0.00 0.00 31.73 3.01
434 444 9.277565 CATTTACCTATGTTTCAATTCGAACTG 57.722 33.333 0.00 0.00 31.73 3.16
441 451 9.318041 CTATGTTTCAATTCGAACTGTGTTTAG 57.682 33.333 6.49 0.47 31.73 1.85
451 461 6.869473 TCGAACTGTGTTTAGTTATGTTTCG 58.131 36.000 0.00 0.00 40.78 3.46
453 463 7.383029 TCGAACTGTGTTTAGTTATGTTTCGAT 59.617 33.333 0.00 0.00 40.78 3.59
489 542 8.129211 AGTTGAACTTGCTAGTTTTTACATCAC 58.871 33.333 14.73 5.01 44.51 3.06
532 585 8.603242 TCTATTGGAGTTGAAGTTTTCTACAC 57.397 34.615 6.26 0.79 37.78 2.90
533 586 8.208224 TCTATTGGAGTTGAAGTTTTCTACACA 58.792 33.333 6.26 2.85 37.78 3.72
534 587 7.823745 ATTGGAGTTGAAGTTTTCTACACAT 57.176 32.000 6.26 0.00 37.78 3.21
535 588 6.861065 TGGAGTTGAAGTTTTCTACACATC 57.139 37.500 6.26 0.00 37.78 3.06
536 589 6.353323 TGGAGTTGAAGTTTTCTACACATCA 58.647 36.000 6.26 0.00 37.78 3.07
537 590 6.260050 TGGAGTTGAAGTTTTCTACACATCAC 59.740 38.462 6.26 0.00 37.78 3.06
538 591 6.260050 GGAGTTGAAGTTTTCTACACATCACA 59.740 38.462 6.26 0.00 37.78 3.58
539 592 7.201696 GGAGTTGAAGTTTTCTACACATCACAA 60.202 37.037 6.26 0.00 37.78 3.33
540 593 8.050778 AGTTGAAGTTTTCTACACATCACAAA 57.949 30.769 6.26 0.00 37.78 2.83
541 594 8.686334 AGTTGAAGTTTTCTACACATCACAAAT 58.314 29.630 6.26 0.00 37.78 2.32
542 595 9.944663 GTTGAAGTTTTCTACACATCACAAATA 57.055 29.630 0.00 0.00 35.83 1.40
579 632 8.727100 TTGGAGTACATCATATCTATTGGAGT 57.273 34.615 0.00 0.00 0.00 3.85
580 633 8.727100 TGGAGTACATCATATCTATTGGAGTT 57.273 34.615 0.00 0.00 0.00 3.01
581 634 8.588472 TGGAGTACATCATATCTATTGGAGTTG 58.412 37.037 0.00 0.00 0.00 3.16
582 635 8.807118 GGAGTACATCATATCTATTGGAGTTGA 58.193 37.037 0.00 0.00 0.00 3.18
585 638 9.988815 GTACATCATATCTATTGGAGTTGAAGT 57.011 33.333 0.00 0.00 30.99 3.01
587 640 9.911788 ACATCATATCTATTGGAGTTGAAGTTT 57.088 29.630 0.00 0.00 0.00 2.66
594 647 8.603242 TCTATTGGAGTTGAAGTTTTCTACAC 57.397 34.615 6.26 0.79 37.78 2.90
595 648 8.208224 TCTATTGGAGTTGAAGTTTTCTACACA 58.792 33.333 6.26 2.85 37.78 3.72
596 649 7.823745 ATTGGAGTTGAAGTTTTCTACACAT 57.176 32.000 6.26 0.00 37.78 3.21
597 650 6.861065 TGGAGTTGAAGTTTTCTACACATC 57.139 37.500 6.26 0.00 37.78 3.06
598 651 6.353323 TGGAGTTGAAGTTTTCTACACATCA 58.647 36.000 6.26 0.00 37.78 3.07
599 652 6.260050 TGGAGTTGAAGTTTTCTACACATCAC 59.740 38.462 6.26 0.00 37.78 3.06
600 653 6.260050 GGAGTTGAAGTTTTCTACACATCACA 59.740 38.462 6.26 0.00 37.78 3.58
601 654 7.201696 GGAGTTGAAGTTTTCTACACATCACAA 60.202 37.037 6.26 0.00 37.78 3.33
602 655 8.050778 AGTTGAAGTTTTCTACACATCACAAA 57.949 30.769 6.26 0.00 37.78 2.83
603 656 8.686334 AGTTGAAGTTTTCTACACATCACAAAT 58.314 29.630 6.26 0.00 37.78 2.32
604 657 9.944663 GTTGAAGTTTTCTACACATCACAAATA 57.055 29.630 0.00 0.00 35.83 1.40
641 694 8.727100 TTGGAGTACATCATATCTATTGGAGT 57.273 34.615 0.00 0.00 0.00 3.85
642 695 8.727100 TGGAGTACATCATATCTATTGGAGTT 57.273 34.615 0.00 0.00 0.00 3.01
643 696 8.588472 TGGAGTACATCATATCTATTGGAGTTG 58.412 37.037 0.00 0.00 0.00 3.16
644 697 8.807118 GGAGTACATCATATCTATTGGAGTTGA 58.193 37.037 0.00 0.00 0.00 3.18
647 700 9.988815 GTACATCATATCTATTGGAGTTGAAGT 57.011 33.333 0.00 0.00 30.99 3.01
649 702 9.911788 ACATCATATCTATTGGAGTTGAAGTTT 57.088 29.630 0.00 0.00 0.00 2.66
692 745 5.182001 ACATTATCTGTTGAAGTTGGAGTGC 59.818 40.000 0.00 0.00 32.90 4.40
693 746 3.498774 ATCTGTTGAAGTTGGAGTGCT 57.501 42.857 0.00 0.00 0.00 4.40
694 747 3.281727 TCTGTTGAAGTTGGAGTGCTT 57.718 42.857 0.00 0.00 0.00 3.91
697 750 5.189928 TCTGTTGAAGTTGGAGTGCTTTTA 58.810 37.500 0.00 0.00 0.00 1.52
712 765 9.788960 GGAGTGCTTTTATTAAGATGTAAAAGG 57.211 33.333 15.68 4.15 43.26 3.11
713 766 9.290483 GAGTGCTTTTATTAAGATGTAAAAGGC 57.710 33.333 15.68 10.82 43.26 4.35
714 767 8.802267 AGTGCTTTTATTAAGATGTAAAAGGCA 58.198 29.630 15.68 12.40 43.26 4.75
846 2042 0.371645 GCTCCTCGTCAATTTCAGCG 59.628 55.000 0.00 0.00 0.00 5.18
928 2124 3.157949 CTCCCTCTCCCGCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
929 2125 4.798682 TCCCTCTCCCGCTTCCCC 62.799 72.222 0.00 0.00 0.00 4.81
956 2152 1.353804 CCCAACCAACACGTTGACG 59.646 57.895 11.46 1.41 44.88 4.35
1227 2424 3.050275 GTGGCTCTGGCGGTTGTC 61.050 66.667 0.00 0.00 39.81 3.18
1363 2561 1.490910 CCTTGATCCCTTACCAGGTCC 59.509 57.143 0.00 0.00 38.79 4.46
1366 2564 0.690077 GATCCCTTACCAGGTCCCGT 60.690 60.000 0.00 0.00 38.79 5.28
1446 2644 1.227556 GCGGTGTCAGTGACCACTT 60.228 57.895 20.43 0.00 40.20 3.16
1469 2667 1.227383 GCATTGGGGACGAGGGATT 59.773 57.895 0.00 0.00 0.00 3.01
1474 2672 2.367202 GGGGACGAGGGATTGCTGA 61.367 63.158 0.00 0.00 0.00 4.26
1504 2702 1.255882 ATTTTTGGTGAGGATGCGCA 58.744 45.000 14.96 14.96 0.00 6.09
1686 2901 1.139163 GCATTTTTGTGGGCAACTCG 58.861 50.000 0.00 0.00 33.82 4.18
1700 2915 0.463116 AACTCGACTGGCGGTTGTTT 60.463 50.000 13.36 5.68 41.33 2.83
1723 2938 4.275689 TGTTTAGCTCCCATGCAATTATCG 59.724 41.667 0.00 0.00 34.99 2.92
1802 3029 4.498682 GCCTGATGACATTACCAGCAAATC 60.499 45.833 0.00 0.00 28.96 2.17
1897 3126 5.546499 TCAGGACTCTTATGTGGTTTACCTT 59.454 40.000 0.00 0.00 36.82 3.50
1942 3171 1.202405 CCAATTGCGTGGGAAATAGCC 60.202 52.381 0.00 0.00 34.77 3.93
1982 3211 6.540914 TGTTACAGGAAAAGGACACTGTTTAG 59.459 38.462 0.00 0.00 41.03 1.85
1983 3212 5.112129 ACAGGAAAAGGACACTGTTTAGT 57.888 39.130 0.00 0.00 41.03 2.24
1986 3215 5.588648 CAGGAAAAGGACACTGTTTAGTTGA 59.411 40.000 0.00 0.00 34.07 3.18
2065 3294 6.749118 GCAATTGATTACTTGAAGGACATCAC 59.251 38.462 10.34 0.00 0.00 3.06
2111 3340 1.462616 TTTCATTCCTGCGACCCATG 58.537 50.000 0.00 0.00 0.00 3.66
2112 3341 0.327924 TTCATTCCTGCGACCCATGT 59.672 50.000 0.00 0.00 0.00 3.21
2113 3342 1.199615 TCATTCCTGCGACCCATGTA 58.800 50.000 0.00 0.00 0.00 2.29
2114 3343 1.138859 TCATTCCTGCGACCCATGTAG 59.861 52.381 0.00 0.00 0.00 2.74
2115 3344 0.469917 ATTCCTGCGACCCATGTAGG 59.530 55.000 0.00 0.00 40.22 3.18
2116 3345 0.616395 TTCCTGCGACCCATGTAGGA 60.616 55.000 0.00 0.00 45.00 2.94
2151 3380 2.949447 GGTACCCGGTCACTTCCTATA 58.051 52.381 0.00 0.00 0.00 1.31
2159 3388 3.381949 GGTCACTTCCTATACACGCATC 58.618 50.000 0.00 0.00 0.00 3.91
2167 3396 5.485662 TCCTATACACGCATCTCATATCG 57.514 43.478 0.00 0.00 0.00 2.92
2267 3496 9.435688 AGAATTTCTTAAAACAATTATGGTGCC 57.564 29.630 0.00 0.00 0.00 5.01
2283 3512 2.865551 GGTGCCACAAAATGTTGACTTG 59.134 45.455 1.62 0.00 38.20 3.16
2306 3535 4.788201 GCGTGCATGTACAAAAAGTTGAGA 60.788 41.667 14.55 0.00 38.20 3.27
2433 3666 3.492102 AAGTTGCACTGAGCCTTCTTA 57.508 42.857 0.00 0.00 44.83 2.10
2438 3671 2.086869 GCACTGAGCCTTCTTATTGCA 58.913 47.619 0.00 0.00 35.50 4.08
2446 3679 3.947834 AGCCTTCTTATTGCATGTGGTAC 59.052 43.478 0.00 0.00 0.00 3.34
2452 3685 7.362834 CCTTCTTATTGCATGTGGTACATTTCA 60.363 37.037 0.00 0.00 44.52 2.69
2498 3731 5.068198 ACCTACATAAATCAATGCTGCCTTG 59.932 40.000 10.87 10.87 0.00 3.61
2530 3763 4.379302 AGTTTCTTTGGGAATCTGCTCT 57.621 40.909 0.00 0.00 33.99 4.09
2542 3775 5.008118 GGGAATCTGCTCTATGTTGCTTTAC 59.992 44.000 0.00 0.00 0.00 2.01
2650 3883 4.642437 TGTGAGAATGTGGTAAAAACTGCA 59.358 37.500 0.00 0.00 0.00 4.41
2765 4003 5.780793 ACACTAACTTCTTACAGTCCCAGAT 59.219 40.000 0.00 0.00 0.00 2.90
2804 4042 6.316390 GGTTAGATAATTGGACCAGTGAGTTG 59.684 42.308 0.00 0.00 0.00 3.16
2874 4225 9.939424 ATTTAAGTGTAAGATAGTACTCCCTCT 57.061 33.333 0.00 0.00 0.00 3.69
2875 4226 8.749026 TTAAGTGTAAGATAGTACTCCCTCTG 57.251 38.462 0.00 0.00 0.00 3.35
2876 4227 6.330178 AGTGTAAGATAGTACTCCCTCTGT 57.670 41.667 0.00 0.00 0.00 3.41
2877 4228 6.358991 AGTGTAAGATAGTACTCCCTCTGTC 58.641 44.000 0.00 0.00 0.00 3.51
2878 4229 5.532032 GTGTAAGATAGTACTCCCTCTGTCC 59.468 48.000 0.00 0.00 0.00 4.02
2879 4230 5.432390 TGTAAGATAGTACTCCCTCTGTCCT 59.568 44.000 0.00 0.00 0.00 3.85
2880 4231 6.618610 TGTAAGATAGTACTCCCTCTGTCCTA 59.381 42.308 0.00 0.00 0.00 2.94
2881 4232 6.790177 AAGATAGTACTCCCTCTGTCCTAT 57.210 41.667 0.00 0.00 0.00 2.57
2882 4233 7.891825 AAGATAGTACTCCCTCTGTCCTATA 57.108 40.000 0.00 0.00 0.00 1.31
2883 4234 7.891825 AGATAGTACTCCCTCTGTCCTATAA 57.108 40.000 0.00 0.00 0.00 0.98
2884 4235 8.471302 AGATAGTACTCCCTCTGTCCTATAAT 57.529 38.462 0.00 0.00 0.00 1.28
2885 4236 8.333235 AGATAGTACTCCCTCTGTCCTATAATG 58.667 40.741 0.00 0.00 0.00 1.90
2886 4237 6.282568 AGTACTCCCTCTGTCCTATAATGT 57.717 41.667 0.00 0.00 0.00 2.71
2887 4238 7.403837 AGTACTCCCTCTGTCCTATAATGTA 57.596 40.000 0.00 0.00 0.00 2.29
2888 4239 7.823635 AGTACTCCCTCTGTCCTATAATGTAA 58.176 38.462 0.00 0.00 0.00 2.41
2889 4240 7.945664 AGTACTCCCTCTGTCCTATAATGTAAG 59.054 40.741 0.00 0.00 0.00 2.34
2890 4241 6.923670 ACTCCCTCTGTCCTATAATGTAAGA 58.076 40.000 0.00 0.00 0.00 2.10
2891 4242 7.540183 ACTCCCTCTGTCCTATAATGTAAGAT 58.460 38.462 0.00 0.00 0.00 2.40
2892 4243 7.453126 ACTCCCTCTGTCCTATAATGTAAGATG 59.547 40.741 0.00 0.00 0.00 2.90
2893 4244 7.306013 TCCCTCTGTCCTATAATGTAAGATGT 58.694 38.462 0.00 0.00 0.00 3.06
2894 4245 7.789831 TCCCTCTGTCCTATAATGTAAGATGTT 59.210 37.037 0.00 0.00 0.00 2.71
2895 4246 8.432805 CCCTCTGTCCTATAATGTAAGATGTTT 58.567 37.037 0.00 0.00 0.00 2.83
2896 4247 9.838339 CCTCTGTCCTATAATGTAAGATGTTTT 57.162 33.333 0.00 0.00 0.00 2.43
2944 4295 4.995124 CGTCTTATATTATGGGACGGAGG 58.005 47.826 17.59 0.00 43.69 4.30
2945 4296 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
2946 4297 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
2947 4298 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
3030 4513 1.214062 CTGACGCTGTCTCTCCACC 59.786 63.158 9.49 0.00 33.15 4.61
3032 4515 0.900182 TGACGCTGTCTCTCCACCAT 60.900 55.000 9.49 0.00 33.15 3.55
3038 4521 2.100197 CTGTCTCTCCACCATTACCGA 58.900 52.381 0.00 0.00 0.00 4.69
3044 4527 0.037139 TCCACCATTACCGACAACCG 60.037 55.000 0.00 0.00 38.18 4.44
3072 4555 2.805671 TGTTGTGCAAATACTCACCTCG 59.194 45.455 0.00 0.00 32.51 4.63
3074 4557 2.412870 TGTGCAAATACTCACCTCGTG 58.587 47.619 0.00 0.00 32.51 4.35
3143 4628 0.171903 GCCAAATGCACAGCGAGATT 59.828 50.000 0.00 0.00 40.77 2.40
3152 4637 3.118992 TGCACAGCGAGATTAGATCTGTT 60.119 43.478 5.18 0.00 40.38 3.16
3172 4657 6.097554 TCTGTTCTTTGTTTTCAATGGGCTTA 59.902 34.615 0.00 0.00 39.70 3.09
3346 4833 2.958355 TGGTTGCAAAGAAGAGGGAAAG 59.042 45.455 0.00 0.00 0.00 2.62
3354 4841 1.064832 AGAAGAGGGAAAGCAGGCATC 60.065 52.381 0.00 0.00 0.00 3.91
3364 4851 2.328819 AGCAGGCATCACAAGATCTC 57.671 50.000 0.00 0.00 30.20 2.75
3390 4877 2.776659 GGTTTACCCGAGTCCATGC 58.223 57.895 0.00 0.00 0.00 4.06
3456 4943 0.908910 TCGGTGTGATATTGGCCACT 59.091 50.000 3.88 1.42 34.57 4.00
3488 4975 3.290039 AAATGGGGAAGGGGACAAAAT 57.710 42.857 0.00 0.00 0.00 1.82
3526 5013 1.745087 CCCACGCGGTTTACTAGAGTA 59.255 52.381 12.47 0.00 0.00 2.59
3527 5014 2.360165 CCCACGCGGTTTACTAGAGTAT 59.640 50.000 12.47 0.00 0.00 2.12
3564 5056 3.817647 GGAGTGCTGAGACTTCATTTTGT 59.182 43.478 0.00 0.00 31.68 2.83
3569 5061 6.040166 AGTGCTGAGACTTCATTTTGTCATTT 59.960 34.615 0.00 0.00 35.81 2.32
3611 5104 3.824443 CGGTTTTGGTCCTATTTCAACCT 59.176 43.478 0.00 0.00 34.05 3.50
3627 5120 5.435686 TCAACCTGTGAAATAGCTACCAT 57.564 39.130 0.00 0.00 31.51 3.55
3660 5154 5.293560 AGCTCAAACTCTTGTACAGAAGTC 58.706 41.667 11.35 1.65 33.94 3.01
3670 5164 5.477291 TCTTGTACAGAAGTCCTACTCTTGG 59.523 44.000 0.00 0.00 0.00 3.61
3685 5211 2.291741 CTCTTGGTTGCCTCTTGTTGTC 59.708 50.000 0.00 0.00 0.00 3.18
3709 5235 6.981559 TCACAAAAACTAAATGCTTACAACCC 59.018 34.615 0.00 0.00 0.00 4.11
3816 5342 4.525487 TGGAGCTCTTGCAGAAATTGAAAT 59.475 37.500 14.64 0.00 42.74 2.17
3902 5826 8.143193 AGTGATTTATTGATTGTTTCTTGTGCA 58.857 29.630 0.00 0.00 0.00 4.57
3910 5834 7.375106 TGATTGTTTCTTGTGCAAAATTGTT 57.625 28.000 0.00 0.00 0.00 2.83
4175 6105 7.173907 GCATTCTGCTTAAATTGGAGCTCTATA 59.826 37.037 14.64 0.00 40.96 1.31
4252 6226 7.596248 GTGCATGACAAGTTTTATCTCAACATT 59.404 33.333 0.00 0.00 0.00 2.71
4344 6318 9.727627 CTGCATCAGTCCTTTTAAGAAATATTC 57.272 33.333 0.00 0.00 0.00 1.75
4350 6324 9.454859 CAGTCCTTTTAAGAAATATTCTGGTCT 57.545 33.333 0.00 0.00 40.59 3.85
4433 6418 3.302365 AACCATTGAACTGCATTTCCG 57.698 42.857 13.60 3.29 0.00 4.30
4499 6484 2.289819 TGGAGAAACCATGTTCCCGTAC 60.290 50.000 0.00 0.00 44.64 3.67
4513 6498 1.445582 CGTACGAGGTGGGCACTTC 60.446 63.158 10.44 0.00 34.50 3.01
4524 6509 2.035632 TGGGCACTTCGGAAATTTTGT 58.964 42.857 0.00 0.00 0.00 2.83
4529 6514 4.529446 GCACTTCGGAAATTTTGTTACGA 58.471 39.130 0.00 0.00 42.04 3.43
4608 6594 3.558829 TGAACATAGGCTACGACTACGAG 59.441 47.826 0.00 0.00 42.66 4.18
4647 6633 0.037046 TAAAACCGAGGAAGGGCGAC 60.037 55.000 0.00 0.00 35.02 5.19
4721 6707 0.250252 TGGCACTCAAGTTCGCATGA 60.250 50.000 0.00 0.00 0.00 3.07
4728 6714 4.024556 CACTCAAGTTCGCATGACTTTTCT 60.025 41.667 0.00 0.00 35.26 2.52
4729 6715 5.177511 CACTCAAGTTCGCATGACTTTTCTA 59.822 40.000 0.00 0.00 35.26 2.10
4730 6716 5.934625 ACTCAAGTTCGCATGACTTTTCTAT 59.065 36.000 0.00 0.00 35.26 1.98
4731 6717 6.091441 ACTCAAGTTCGCATGACTTTTCTATC 59.909 38.462 0.00 0.00 35.26 2.08
4732 6718 5.931724 TCAAGTTCGCATGACTTTTCTATCA 59.068 36.000 0.00 0.00 35.26 2.15
4733 6719 5.786401 AGTTCGCATGACTTTTCTATCAC 57.214 39.130 0.00 0.00 0.00 3.06
4734 6720 5.237815 AGTTCGCATGACTTTTCTATCACA 58.762 37.500 0.00 0.00 0.00 3.58
4739 6725 6.149308 TCGCATGACTTTTCTATCACAACAAT 59.851 34.615 0.00 0.00 0.00 2.71
4753 6739 9.801714 CTATCACAACAATTTTTCATTCAAAGC 57.198 29.630 0.00 0.00 0.00 3.51
4761 6747 8.460428 ACAATTTTTCATTCAAAGCACATGTTT 58.540 25.926 0.00 0.00 0.00 2.83
4762 6748 8.949953 CAATTTTTCATTCAAAGCACATGTTTC 58.050 29.630 0.00 0.00 0.00 2.78
4811 6798 7.362574 CCCACAACTAAATATGTCGTGGATTTT 60.363 37.037 7.22 0.00 44.12 1.82
4869 6856 2.674380 GGAAGCTGCCCAGTGGTG 60.674 66.667 8.74 0.50 0.00 4.17
4871 6858 1.673665 GAAGCTGCCCAGTGGTGAG 60.674 63.158 8.74 4.34 0.00 3.51
4915 6902 4.026475 CGAAATGGATTAGAGACAAGACGC 60.026 45.833 0.00 0.00 0.00 5.19
5098 7086 5.416952 AGTTTCCATCTGCTAATTTGACAGG 59.583 40.000 9.85 0.00 32.19 4.00
5124 7112 4.530553 TGTTAGTCTAATCTTGGTGGCTGA 59.469 41.667 0.00 0.00 0.00 4.26
5132 7120 1.162698 CTTGGTGGCTGAGTCATGTG 58.837 55.000 0.00 0.00 0.00 3.21
5177 7165 6.373216 TCCGTTCCAAAATATACCTGAACTTG 59.627 38.462 0.00 0.00 32.11 3.16
5205 7197 6.426937 GCTTTGTCCTAAGTCAAACATGTCTA 59.573 38.462 0.00 0.00 29.74 2.59
5206 7198 7.571428 GCTTTGTCCTAAGTCAAACATGTCTAC 60.571 40.741 0.00 0.00 29.74 2.59
5219 7211 7.404139 AAACATGTCTACGTTTGACTAACTC 57.596 36.000 17.92 0.00 34.16 3.01
5220 7212 5.467705 ACATGTCTACGTTTGACTAACTCC 58.532 41.667 17.92 0.00 35.63 3.85
5221 7213 5.010314 ACATGTCTACGTTTGACTAACTCCA 59.990 40.000 17.92 2.04 35.63 3.86
5222 7214 4.863491 TGTCTACGTTTGACTAACTCCAC 58.137 43.478 17.92 0.00 35.63 4.02
5223 7215 4.338964 TGTCTACGTTTGACTAACTCCACA 59.661 41.667 17.92 0.00 35.63 4.17
5224 7216 4.916249 GTCTACGTTTGACTAACTCCACAG 59.084 45.833 12.28 0.00 34.46 3.66
5225 7217 4.823442 TCTACGTTTGACTAACTCCACAGA 59.177 41.667 0.00 0.00 34.46 3.41
5226 7218 4.395959 ACGTTTGACTAACTCCACAGAA 57.604 40.909 0.00 0.00 34.46 3.02
5227 7219 4.761975 ACGTTTGACTAACTCCACAGAAA 58.238 39.130 0.00 0.00 34.46 2.52
5228 7220 5.180271 ACGTTTGACTAACTCCACAGAAAA 58.820 37.500 0.00 0.00 34.46 2.29
5229 7221 5.644636 ACGTTTGACTAACTCCACAGAAAAA 59.355 36.000 0.00 0.00 34.46 1.94
5230 7222 6.317893 ACGTTTGACTAACTCCACAGAAAAAT 59.682 34.615 0.00 0.00 34.46 1.82
5231 7223 7.496591 ACGTTTGACTAACTCCACAGAAAAATA 59.503 33.333 0.00 0.00 34.46 1.40
5232 7224 8.504005 CGTTTGACTAACTCCACAGAAAAATAT 58.496 33.333 0.00 0.00 34.46 1.28
5242 7234 9.685276 ACTCCACAGAAAAATATATGAACATCA 57.315 29.630 0.00 0.00 0.00 3.07
5244 7236 8.623903 TCCACAGAAAAATATATGAACATCAGC 58.376 33.333 0.00 0.00 0.00 4.26
5245 7237 8.627403 CCACAGAAAAATATATGAACATCAGCT 58.373 33.333 0.00 0.00 0.00 4.24
5345 7345 4.525411 AAGTGTCGTTGGTTTTAGTTCG 57.475 40.909 0.00 0.00 0.00 3.95
5346 7346 2.867975 AGTGTCGTTGGTTTTAGTTCGG 59.132 45.455 0.00 0.00 0.00 4.30
5368 7404 4.157840 GGCAACGGAACTTATTTTGGATCT 59.842 41.667 0.00 0.00 0.00 2.75
5431 7541 6.884096 TGTTTGATTTTAGTTGTGCTGTTG 57.116 33.333 0.00 0.00 0.00 3.33
5434 7544 3.313803 TGATTTTAGTTGTGCTGTTGCGA 59.686 39.130 0.00 0.00 43.34 5.10
5461 7585 2.047274 ACAAGGGTCGCATGGTCG 60.047 61.111 0.00 0.00 0.00 4.79
5466 7590 2.509336 GGTCGCATGGTCGGACAG 60.509 66.667 10.76 0.42 0.00 3.51
5481 7606 0.106149 GACAGTGGACGGGTTCTGTT 59.894 55.000 0.00 0.00 40.53 3.16
5482 7607 0.544697 ACAGTGGACGGGTTCTGTTT 59.455 50.000 0.00 0.00 37.81 2.83
5493 7618 2.882761 GGGTTCTGTTTACAGTCCAACC 59.117 50.000 17.33 17.33 42.75 3.77
5501 7626 5.908341 TGTTTACAGTCCAACCATTTTTCC 58.092 37.500 0.00 0.00 0.00 3.13
5504 7629 4.400529 ACAGTCCAACCATTTTTCCAAC 57.599 40.909 0.00 0.00 0.00 3.77
5520 7646 3.215151 TCCAACTGCATACGGTTTTTCA 58.785 40.909 0.00 0.00 42.98 2.69
5522 7648 3.305110 CAACTGCATACGGTTTTTCACC 58.695 45.455 0.00 0.00 42.98 4.02
5548 7674 2.706636 GTGCAGGCACAACTCAGAA 58.293 52.632 18.84 0.00 45.53 3.02
5550 7676 1.610522 GTGCAGGCACAACTCAGAAAT 59.389 47.619 18.84 0.00 45.53 2.17
5551 7677 2.035066 GTGCAGGCACAACTCAGAAATT 59.965 45.455 18.84 0.00 45.53 1.82
5554 7680 3.492011 GCAGGCACAACTCAGAAATTTTG 59.508 43.478 0.00 0.00 0.00 2.44
5556 7682 5.735922 GCAGGCACAACTCAGAAATTTTGTA 60.736 40.000 0.00 0.00 31.00 2.41
5557 7683 6.272318 CAGGCACAACTCAGAAATTTTGTAA 58.728 36.000 0.00 0.00 31.00 2.41
5559 7685 6.756542 AGGCACAACTCAGAAATTTTGTAAAC 59.243 34.615 0.00 0.00 31.00 2.01
5560 7686 6.533367 GGCACAACTCAGAAATTTTGTAAACA 59.467 34.615 0.00 0.00 31.00 2.83
5561 7687 7.254084 GGCACAACTCAGAAATTTTGTAAACAG 60.254 37.037 0.00 0.00 31.00 3.16
5698 7872 4.218200 TGCCCAATGTAGACAATTCACTTG 59.782 41.667 0.00 0.00 40.90 3.16
5755 7929 5.876460 CACATTCATCAACCACTATCACTGA 59.124 40.000 0.00 0.00 0.00 3.41
5764 7938 8.997621 TCAACCACTATCACTGAAGTATAAAC 57.002 34.615 0.00 0.00 0.00 2.01
5765 7939 8.590204 TCAACCACTATCACTGAAGTATAAACA 58.410 33.333 0.00 0.00 0.00 2.83
5766 7940 9.214957 CAACCACTATCACTGAAGTATAAACAA 57.785 33.333 0.00 0.00 0.00 2.83
5810 7984 8.007405 ACAAATACAAGGTTACAAGCTCTTTT 57.993 30.769 0.00 0.00 35.34 2.27
5851 8025 2.490115 GACTCAGACCGTCATCTCAGTT 59.510 50.000 0.40 0.00 28.96 3.16
5904 8078 7.282901 CCATTGTAACAGTTCCATCATGTGATA 59.717 37.037 0.00 0.00 32.63 2.15
5905 8079 8.676401 CATTGTAACAGTTCCATCATGTGATAA 58.324 33.333 0.00 0.00 32.63 1.75
5906 8080 7.609760 TGTAACAGTTCCATCATGTGATAAC 57.390 36.000 0.00 0.00 32.63 1.89
5907 8081 7.164803 TGTAACAGTTCCATCATGTGATAACA 58.835 34.615 9.90 0.00 32.63 2.41
5908 8082 7.663493 TGTAACAGTTCCATCATGTGATAACAA 59.337 33.333 9.90 0.00 32.63 2.83
5909 8083 7.707624 AACAGTTCCATCATGTGATAACAAT 57.292 32.000 9.90 0.00 32.63 2.71
5910 8084 7.325660 ACAGTTCCATCATGTGATAACAATC 57.674 36.000 9.90 0.00 32.63 2.67
5911 8085 6.885918 ACAGTTCCATCATGTGATAACAATCA 59.114 34.615 9.90 0.00 32.63 2.57
5912 8086 7.066645 ACAGTTCCATCATGTGATAACAATCAG 59.933 37.037 9.90 0.86 32.63 2.90
5913 8087 6.039047 AGTTCCATCATGTGATAACAATCAGC 59.961 38.462 9.90 0.00 32.63 4.26
5914 8088 5.438833 TCCATCATGTGATAACAATCAGCA 58.561 37.500 0.00 0.00 32.63 4.41
5915 8089 5.887035 TCCATCATGTGATAACAATCAGCAA 59.113 36.000 0.00 0.00 32.63 3.91
5916 8090 5.975344 CCATCATGTGATAACAATCAGCAAC 59.025 40.000 0.00 0.00 32.63 4.17
5917 8091 6.183360 CCATCATGTGATAACAATCAGCAACT 60.183 38.462 0.00 0.00 32.63 3.16
5918 8092 6.185852 TCATGTGATAACAATCAGCAACTG 57.814 37.500 0.00 0.00 0.00 3.16
5919 8093 4.424061 TGTGATAACAATCAGCAACTGC 57.576 40.909 0.00 0.00 42.49 4.40
5920 8094 8.762834 ATCATGTGATAACAATCAGCAACTGCT 61.763 37.037 0.00 0.00 42.05 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.089551 CGTCGTCATATCTTCCATCCAAATAC 59.910 42.308 0.00 0.00 0.00 1.89
2 3 4.991056 CGTCGTCATATCTTCCATCCAAAT 59.009 41.667 0.00 0.00 0.00 2.32
3 4 4.098807 TCGTCGTCATATCTTCCATCCAAA 59.901 41.667 0.00 0.00 0.00 3.28
5 6 3.219281 TCGTCGTCATATCTTCCATCCA 58.781 45.455 0.00 0.00 0.00 3.41
6 7 3.917329 TCGTCGTCATATCTTCCATCC 57.083 47.619 0.00 0.00 0.00 3.51
7 8 5.109662 TCTTCGTCGTCATATCTTCCATC 57.890 43.478 0.00 0.00 0.00 3.51
8 9 5.299531 TCTTCTTCGTCGTCATATCTTCCAT 59.700 40.000 0.00 0.00 0.00 3.41
9 10 4.638865 TCTTCTTCGTCGTCATATCTTCCA 59.361 41.667 0.00 0.00 0.00 3.53
10 11 5.171147 TCTTCTTCGTCGTCATATCTTCC 57.829 43.478 0.00 0.00 0.00 3.46
11 12 6.487960 TCTTCTTCTTCGTCGTCATATCTTC 58.512 40.000 0.00 0.00 0.00 2.87
12 13 6.438259 TCTTCTTCTTCGTCGTCATATCTT 57.562 37.500 0.00 0.00 0.00 2.40
13 14 6.316640 TCTTCTTCTTCTTCGTCGTCATATCT 59.683 38.462 0.00 0.00 0.00 1.98
14 15 6.487960 TCTTCTTCTTCTTCGTCGTCATATC 58.512 40.000 0.00 0.00 0.00 1.63
15 16 6.438259 TCTTCTTCTTCTTCGTCGTCATAT 57.562 37.500 0.00 0.00 0.00 1.78
16 17 5.163744 CCTCTTCTTCTTCTTCGTCGTCATA 60.164 44.000 0.00 0.00 0.00 2.15
17 18 4.380023 CCTCTTCTTCTTCTTCGTCGTCAT 60.380 45.833 0.00 0.00 0.00 3.06
18 19 3.058155 CCTCTTCTTCTTCTTCGTCGTCA 60.058 47.826 0.00 0.00 0.00 4.35
19 20 3.494232 CCTCTTCTTCTTCTTCGTCGTC 58.506 50.000 0.00 0.00 0.00 4.20
20 21 2.351932 GCCTCTTCTTCTTCTTCGTCGT 60.352 50.000 0.00 0.00 0.00 4.34
21 22 2.255316 GCCTCTTCTTCTTCTTCGTCG 58.745 52.381 0.00 0.00 0.00 5.12
22 23 2.612604 GGCCTCTTCTTCTTCTTCGTC 58.387 52.381 0.00 0.00 0.00 4.20
23 24 1.067495 CGGCCTCTTCTTCTTCTTCGT 60.067 52.381 0.00 0.00 0.00 3.85
24 25 1.634702 CGGCCTCTTCTTCTTCTTCG 58.365 55.000 0.00 0.00 0.00 3.79
25 26 2.009542 GCCGGCCTCTTCTTCTTCTTC 61.010 57.143 18.11 0.00 0.00 2.87
26 27 0.035915 GCCGGCCTCTTCTTCTTCTT 60.036 55.000 18.11 0.00 0.00 2.52
27 28 1.599576 GCCGGCCTCTTCTTCTTCT 59.400 57.895 18.11 0.00 0.00 2.85
28 29 1.450491 GGCCGGCCTCTTCTTCTTC 60.450 63.158 38.76 6.70 0.00 2.87
29 30 1.566298 ATGGCCGGCCTCTTCTTCTT 61.566 55.000 43.34 15.49 36.94 2.52
30 31 1.566298 AATGGCCGGCCTCTTCTTCT 61.566 55.000 43.34 17.29 36.94 2.85
31 32 1.077429 AATGGCCGGCCTCTTCTTC 60.077 57.895 43.34 17.51 36.94 2.87
32 33 1.077429 GAATGGCCGGCCTCTTCTT 60.077 57.895 43.34 27.47 36.94 2.52
33 34 2.592308 GAATGGCCGGCCTCTTCT 59.408 61.111 43.34 23.92 36.94 2.85
34 35 2.897350 CGAATGGCCGGCCTCTTC 60.897 66.667 43.34 37.64 36.94 2.87
42 43 4.520846 GAGCAACGCGAATGGCCG 62.521 66.667 15.93 0.00 38.94 6.13
43 44 4.179579 GGAGCAACGCGAATGGCC 62.180 66.667 15.93 4.52 38.94 5.36
44 45 4.179579 GGGAGCAACGCGAATGGC 62.180 66.667 15.93 10.68 38.69 4.40
51 52 1.944676 CTATCGTCGGGAGCAACGC 60.945 63.158 0.00 0.00 38.72 4.84
52 53 0.866061 CACTATCGTCGGGAGCAACG 60.866 60.000 0.00 0.00 40.17 4.10
63 64 3.108343 CCGCCTCGTCACTATCGT 58.892 61.111 0.00 0.00 0.00 3.73
81 82 1.811266 CGCTGGAACCTCACCATCG 60.811 63.158 0.00 0.00 39.82 3.84
94 95 1.664873 CTAGAGATGCTCCCGCTGG 59.335 63.158 0.00 0.00 36.97 4.85
95 96 1.664873 CCTAGAGATGCTCCCGCTG 59.335 63.158 0.00 0.00 36.97 5.18
96 97 2.206536 GCCTAGAGATGCTCCCGCT 61.207 63.158 0.00 0.00 36.97 5.52
98 99 0.825425 TCAGCCTAGAGATGCTCCCG 60.825 60.000 0.00 0.00 35.12 5.14
121 122 0.109272 CGCGCTTCCAGTAGAACTCA 60.109 55.000 5.56 0.00 0.00 3.41
138 139 3.649277 TTCTTCTGCTCGGCCTCGC 62.649 63.158 0.00 3.27 36.13 5.03
186 187 1.559065 GGGGATCACCGTTGAGGGAA 61.559 60.000 0.00 0.00 46.96 3.97
187 188 1.993391 GGGGATCACCGTTGAGGGA 60.993 63.158 0.00 0.00 46.96 4.20
198 199 0.748367 CTCAGACTCGACGGGGATCA 60.748 60.000 0.00 0.00 0.00 2.92
200 201 0.748729 GACTCAGACTCGACGGGGAT 60.749 60.000 0.00 0.00 0.00 3.85
219 220 3.391382 GAGTCACCCCAGTCCCCG 61.391 72.222 0.00 0.00 0.00 5.73
247 249 4.773117 GTCGTCGCACCCCTCGTC 62.773 72.222 0.00 0.00 0.00 4.20
276 278 0.318441 TGAACTGCTCCCAGAACTCG 59.682 55.000 0.00 0.00 41.77 4.18
284 286 3.151461 GAGCTCTTGAACTGCTCCC 57.849 57.895 6.43 0.00 45.12 4.30
360 365 8.605325 ACTACACCCATCAAATTACTACTACT 57.395 34.615 0.00 0.00 0.00 2.57
361 366 9.962783 CTACTACACCCATCAAATTACTACTAC 57.037 37.037 0.00 0.00 0.00 2.73
363 368 8.605325 ACTACTACACCCATCAAATTACTACT 57.395 34.615 0.00 0.00 0.00 2.57
391 401 7.868974 AGGTAAATGGCTACCACTACTAATTT 58.131 34.615 4.47 0.00 43.42 1.82
396 406 5.903589 ACATAGGTAAATGGCTACCACTACT 59.096 40.000 4.47 0.00 43.42 2.57
407 417 8.458843 AGTTCGAATTGAAACATAGGTAAATGG 58.541 33.333 0.00 0.00 38.60 3.16
414 424 6.241207 ACACAGTTCGAATTGAAACATAGG 57.759 37.500 25.29 7.81 38.60 2.57
415 425 9.318041 CTAAACACAGTTCGAATTGAAACATAG 57.682 33.333 25.29 15.49 38.60 2.23
423 433 9.445786 AAACATAACTAAACACAGTTCGAATTG 57.554 29.630 18.04 18.04 39.45 2.32
455 465 8.959705 AAACTAGCAAGTTCAACTACTACTTT 57.040 30.769 0.00 0.00 45.37 2.66
498 551 9.739276 AACTTCAACTCCAATAGATATTTGTGA 57.261 29.630 0.00 0.00 0.00 3.58
553 606 9.331466 ACTCCAATAGATATGATGTACTCCAAT 57.669 33.333 0.00 0.00 0.00 3.16
554 607 8.727100 ACTCCAATAGATATGATGTACTCCAA 57.273 34.615 0.00 0.00 0.00 3.53
555 608 8.588472 CAACTCCAATAGATATGATGTACTCCA 58.412 37.037 0.00 0.00 0.00 3.86
556 609 8.807118 TCAACTCCAATAGATATGATGTACTCC 58.193 37.037 0.00 0.00 0.00 3.85
559 612 9.988815 ACTTCAACTCCAATAGATATGATGTAC 57.011 33.333 0.00 0.00 30.48 2.90
561 614 9.911788 AAACTTCAACTCCAATAGATATGATGT 57.088 29.630 0.00 0.00 31.91 3.06
568 621 9.220767 GTGTAGAAAACTTCAACTCCAATAGAT 57.779 33.333 0.00 0.00 0.00 1.98
569 622 8.208224 TGTGTAGAAAACTTCAACTCCAATAGA 58.792 33.333 0.00 0.00 0.00 1.98
570 623 8.378172 TGTGTAGAAAACTTCAACTCCAATAG 57.622 34.615 0.00 0.00 0.00 1.73
571 624 8.918202 ATGTGTAGAAAACTTCAACTCCAATA 57.082 30.769 0.00 0.00 0.00 1.90
572 625 7.502226 TGATGTGTAGAAAACTTCAACTCCAAT 59.498 33.333 0.00 0.00 31.11 3.16
573 626 6.826231 TGATGTGTAGAAAACTTCAACTCCAA 59.174 34.615 0.00 0.00 31.11 3.53
574 627 6.260050 GTGATGTGTAGAAAACTTCAACTCCA 59.740 38.462 0.00 0.00 34.60 3.86
575 628 6.260050 TGTGATGTGTAGAAAACTTCAACTCC 59.740 38.462 0.00 0.00 34.60 3.85
576 629 7.246674 TGTGATGTGTAGAAAACTTCAACTC 57.753 36.000 0.00 0.00 34.60 3.01
577 630 7.624360 TTGTGATGTGTAGAAAACTTCAACT 57.376 32.000 0.00 0.00 34.60 3.16
578 631 8.856490 ATTTGTGATGTGTAGAAAACTTCAAC 57.144 30.769 0.00 0.00 34.60 3.18
615 668 9.331466 ACTCCAATAGATATGATGTACTCCAAT 57.669 33.333 0.00 0.00 0.00 3.16
616 669 8.727100 ACTCCAATAGATATGATGTACTCCAA 57.273 34.615 0.00 0.00 0.00 3.53
617 670 8.588472 CAACTCCAATAGATATGATGTACTCCA 58.412 37.037 0.00 0.00 0.00 3.86
618 671 8.807118 TCAACTCCAATAGATATGATGTACTCC 58.193 37.037 0.00 0.00 0.00 3.85
621 674 9.988815 ACTTCAACTCCAATAGATATGATGTAC 57.011 33.333 0.00 0.00 30.48 2.90
623 676 9.911788 AAACTTCAACTCCAATAGATATGATGT 57.088 29.630 0.00 0.00 31.91 3.06
630 683 9.220767 GTGTAGAAAACTTCAACTCCAATAGAT 57.779 33.333 0.00 0.00 0.00 1.98
631 684 8.208224 TGTGTAGAAAACTTCAACTCCAATAGA 58.792 33.333 0.00 0.00 0.00 1.98
632 685 8.378172 TGTGTAGAAAACTTCAACTCCAATAG 57.622 34.615 0.00 0.00 0.00 1.73
633 686 8.918202 ATGTGTAGAAAACTTCAACTCCAATA 57.082 30.769 0.00 0.00 0.00 1.90
634 687 7.502226 TGATGTGTAGAAAACTTCAACTCCAAT 59.498 33.333 0.00 0.00 31.11 3.16
635 688 6.826231 TGATGTGTAGAAAACTTCAACTCCAA 59.174 34.615 0.00 0.00 31.11 3.53
636 689 6.260050 GTGATGTGTAGAAAACTTCAACTCCA 59.740 38.462 0.00 0.00 34.60 3.86
637 690 6.260050 TGTGATGTGTAGAAAACTTCAACTCC 59.740 38.462 0.00 0.00 34.60 3.85
638 691 7.246674 TGTGATGTGTAGAAAACTTCAACTC 57.753 36.000 0.00 0.00 34.60 3.01
639 692 7.624360 TTGTGATGTGTAGAAAACTTCAACT 57.376 32.000 0.00 0.00 34.60 3.16
640 693 8.856490 ATTTGTGATGTGTAGAAAACTTCAAC 57.144 30.769 0.00 0.00 34.60 3.18
675 728 4.376340 AAAAGCACTCCAACTTCAACAG 57.624 40.909 0.00 0.00 0.00 3.16
687 740 9.290483 GCCTTTTACATCTTAATAAAAGCACTC 57.710 33.333 11.22 1.47 42.89 3.51
688 741 8.802267 TGCCTTTTACATCTTAATAAAAGCACT 58.198 29.630 11.22 0.00 42.89 4.40
689 742 8.860128 GTGCCTTTTACATCTTAATAAAAGCAC 58.140 33.333 18.12 18.12 42.89 4.40
690 743 8.802267 AGTGCCTTTTACATCTTAATAAAAGCA 58.198 29.630 11.22 10.30 42.89 3.91
709 762 9.643693 CAAATTTACATCATTAAGAAGTGCCTT 57.356 29.630 0.00 0.00 29.71 4.35
735 1928 3.433615 GTCAGTCAAGTGTGGCAGTAATC 59.566 47.826 0.00 0.00 0.00 1.75
929 2125 3.838913 TTGGTTGGGTGGGGTGGG 61.839 66.667 0.00 0.00 0.00 4.61
930 2126 2.523168 GTTGGTTGGGTGGGGTGG 60.523 66.667 0.00 0.00 0.00 4.61
931 2127 2.131067 GTGTTGGTTGGGTGGGGTG 61.131 63.158 0.00 0.00 0.00 4.61
932 2128 2.280753 GTGTTGGTTGGGTGGGGT 59.719 61.111 0.00 0.00 0.00 4.95
1446 2644 1.697432 CCCTCGTCCCCAATGCTAATA 59.303 52.381 0.00 0.00 0.00 0.98
1469 2667 3.684103 AAAATTTCACGAACGTCAGCA 57.316 38.095 0.00 0.00 0.00 4.41
1474 2672 4.347813 CTCACCAAAAATTTCACGAACGT 58.652 39.130 0.00 0.00 0.00 3.99
1504 2702 4.664677 GTCGCCACCGAGTGCAGT 62.665 66.667 0.00 0.00 45.38 4.40
1609 2817 7.012138 CCGTTGTACAGACAGTAGATACAGTAT 59.988 40.741 0.00 0.00 36.76 2.12
1610 2818 6.314648 CCGTTGTACAGACAGTAGATACAGTA 59.685 42.308 0.00 0.00 36.76 2.74
1611 2819 5.123502 CCGTTGTACAGACAGTAGATACAGT 59.876 44.000 0.00 0.00 36.76 3.55
1612 2820 5.353400 TCCGTTGTACAGACAGTAGATACAG 59.647 44.000 0.00 0.00 36.76 2.74
1613 2821 5.247862 TCCGTTGTACAGACAGTAGATACA 58.752 41.667 0.00 0.00 36.76 2.29
1614 2822 5.808042 TCCGTTGTACAGACAGTAGATAC 57.192 43.478 0.00 0.00 36.76 2.24
1615 2823 7.400599 AAATCCGTTGTACAGACAGTAGATA 57.599 36.000 0.00 0.00 36.76 1.98
1686 2901 2.857104 GCTAAACAAACAACCGCCAGTC 60.857 50.000 0.00 0.00 0.00 3.51
1700 2915 4.275689 CGATAATTGCATGGGAGCTAAACA 59.724 41.667 0.00 0.00 34.99 2.83
1727 2942 4.755123 ACAATATTCCGTTAGGCATGTAGC 59.245 41.667 0.00 0.00 44.65 3.58
1741 2968 5.493133 TTCCACATGCGTAACAATATTCC 57.507 39.130 0.00 0.00 0.00 3.01
1748 2975 4.508662 TGTGATATTCCACATGCGTAACA 58.491 39.130 0.00 0.00 41.63 2.41
1802 3029 3.678289 TCACAGAATCCACATGTCTTGG 58.322 45.455 0.00 0.00 35.18 3.61
1897 3126 6.419791 CCAATACCACAACTAATAGGAACCA 58.580 40.000 0.00 0.00 0.00 3.67
1942 3171 7.979444 TCCTGTAACAACTTCCTTTGAATAG 57.021 36.000 0.00 0.00 0.00 1.73
2019 3248 3.676873 GCCAATGCAATTCTCCGACAAAT 60.677 43.478 0.00 0.00 31.22 2.32
2047 3276 3.935203 CGCAGTGATGTCCTTCAAGTAAT 59.065 43.478 0.00 0.00 0.00 1.89
2051 3280 2.084610 TCGCAGTGATGTCCTTCAAG 57.915 50.000 0.00 0.00 0.00 3.02
2065 3294 3.730061 GCAGTTCCATCTTTCATTCGCAG 60.730 47.826 0.00 0.00 0.00 5.18
2111 3340 5.688814 ACCCATTTGTTAGGTACTCCTAC 57.311 43.478 0.00 0.00 44.96 3.18
2134 3363 2.105766 GTGTATAGGAAGTGACCGGGT 58.894 52.381 6.32 0.00 34.73 5.28
2151 3380 1.328279 TCCCGATATGAGATGCGTGT 58.672 50.000 0.00 0.00 0.00 4.49
2204 3433 7.576236 AGATTTGATTGTACAAACTCACGAAG 58.424 34.615 13.23 0.00 41.49 3.79
2249 3478 8.562892 CATTTTGTGGCACCATAATTGTTTTAA 58.437 29.630 16.26 0.00 0.00 1.52
2283 3512 3.367607 TCAACTTTTTGTACATGCACGC 58.632 40.909 0.00 0.00 34.02 5.34
2433 3666 7.119553 GGAAAAATGAAATGTACCACATGCAAT 59.880 33.333 0.00 0.00 37.97 3.56
2438 3671 7.301868 ACAGGAAAAATGAAATGTACCACAT 57.698 32.000 0.00 0.00 41.31 3.21
2446 3679 8.606040 AATTGTGGTACAGGAAAAATGAAATG 57.394 30.769 0.00 0.00 41.80 2.32
2452 3685 6.326323 AGGTGAAATTGTGGTACAGGAAAAAT 59.674 34.615 0.00 0.00 41.80 1.82
2498 3731 4.079970 CCCAAAGAAACTAAGAAGGGGTC 58.920 47.826 0.00 0.00 0.00 4.46
2542 3775 8.253810 TGTTCAAGAGGATGAGAGTTACATTAG 58.746 37.037 0.00 0.00 0.00 1.73
2746 3984 6.013379 TGAATGATCTGGGACTGTAAGAAGTT 60.013 38.462 0.00 0.00 37.43 2.66
2747 3985 5.485353 TGAATGATCTGGGACTGTAAGAAGT 59.515 40.000 0.00 0.00 37.43 3.01
2748 3986 5.982356 TGAATGATCTGGGACTGTAAGAAG 58.018 41.667 0.00 0.00 37.43 2.85
2749 3987 6.156775 TGATGAATGATCTGGGACTGTAAGAA 59.843 38.462 0.00 0.00 32.40 2.52
2804 4042 6.176014 AGTAATAATTACCTGCTGGTCTCC 57.824 41.667 19.71 0.46 44.78 3.71
2864 4215 7.943447 TCTTACATTATAGGACAGAGGGAGTAC 59.057 40.741 0.00 0.00 0.00 2.73
2865 4216 8.053776 TCTTACATTATAGGACAGAGGGAGTA 57.946 38.462 0.00 0.00 0.00 2.59
2866 4217 6.923670 TCTTACATTATAGGACAGAGGGAGT 58.076 40.000 0.00 0.00 0.00 3.85
2867 4218 7.453126 ACATCTTACATTATAGGACAGAGGGAG 59.547 40.741 0.00 0.00 0.00 4.30
2868 4219 7.306013 ACATCTTACATTATAGGACAGAGGGA 58.694 38.462 0.00 0.00 0.00 4.20
2869 4220 7.546250 ACATCTTACATTATAGGACAGAGGG 57.454 40.000 0.00 0.00 0.00 4.30
2870 4221 9.838339 AAAACATCTTACATTATAGGACAGAGG 57.162 33.333 0.00 0.00 0.00 3.69
2917 4268 7.274447 TCCGTCCCATAATATAAGACGTTTTT 58.726 34.615 17.31 0.00 46.62 1.94
2918 4269 6.819284 TCCGTCCCATAATATAAGACGTTTT 58.181 36.000 17.31 0.00 46.62 2.43
2919 4270 6.409524 TCCGTCCCATAATATAAGACGTTT 57.590 37.500 17.31 0.00 46.62 3.60
2920 4271 5.047519 CCTCCGTCCCATAATATAAGACGTT 60.048 44.000 17.31 0.00 46.62 3.99
2921 4272 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
2923 4274 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
2924 4275 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2925 4276 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2926 4277 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2927 4278 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2928 4279 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2929 4280 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2930 4281 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2931 4282 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2932 4283 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
2933 4284 2.191981 ATTTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
2934 4285 1.835531 GAATTTACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
2935 4286 2.117051 AGAATTTACTCCCTCCGTCCC 58.883 52.381 0.00 0.00 0.00 4.46
2936 4287 4.740034 GCTTAGAATTTACTCCCTCCGTCC 60.740 50.000 0.00 0.00 0.00 4.79
2937 4288 4.142004 TGCTTAGAATTTACTCCCTCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
2938 4289 3.773119 TGCTTAGAATTTACTCCCTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
2939 4290 4.402056 TGCTTAGAATTTACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
2940 4291 5.944007 TGTTTGCTTAGAATTTACTCCCTCC 59.056 40.000 0.00 0.00 0.00 4.30
2941 4292 7.448748 TTGTTTGCTTAGAATTTACTCCCTC 57.551 36.000 0.00 0.00 0.00 4.30
2942 4293 7.833285 TTTGTTTGCTTAGAATTTACTCCCT 57.167 32.000 0.00 0.00 0.00 4.20
2943 4294 9.489084 AATTTTGTTTGCTTAGAATTTACTCCC 57.511 29.630 0.00 0.00 0.00 4.30
2946 4297 9.830975 ACCAATTTTGTTTGCTTAGAATTTACT 57.169 25.926 0.00 0.00 0.00 2.24
3009 4492 1.135632 GTGGAGAGACAGCGTCAGTAC 60.136 57.143 10.52 0.00 34.60 2.73
3030 4513 0.167251 GCCAACGGTTGTCGGTAATG 59.833 55.000 18.73 3.06 44.45 1.90
3032 4515 1.597578 GGCCAACGGTTGTCGGTAA 60.598 57.895 18.73 0.00 44.45 2.85
3038 4521 3.520402 CAACAGGCCAACGGTTGT 58.480 55.556 18.73 0.00 46.08 3.32
3044 4527 2.035832 AGTATTTGCACAACAGGCCAAC 59.964 45.455 5.01 0.00 0.00 3.77
3048 4531 2.351738 GGTGAGTATTTGCACAACAGGC 60.352 50.000 0.00 0.00 36.76 4.85
3143 4628 7.523709 GCCCATTGAAAACAAAGAACAGATCTA 60.524 37.037 0.00 0.00 37.42 1.98
3152 4637 8.865090 TCTTATTAAGCCCATTGAAAACAAAGA 58.135 29.630 0.00 0.00 0.00 2.52
3218 4703 8.726988 TCATGAACTTACAGTAACAAATAAGGC 58.273 33.333 0.00 0.00 0.00 4.35
3346 4833 0.935898 CGAGATCTTGTGATGCCTGC 59.064 55.000 0.00 0.00 32.19 4.85
3354 4841 0.179089 CCCAGCTCCGAGATCTTGTG 60.179 60.000 9.19 2.96 0.00 3.33
3390 4877 1.526575 ATGTGCCCTGCAAAACCTCG 61.527 55.000 0.00 0.00 41.47 4.63
3526 5013 6.551227 TCAGCACTCCTATATGTCAACACTAT 59.449 38.462 0.00 0.00 0.00 2.12
3527 5014 5.891551 TCAGCACTCCTATATGTCAACACTA 59.108 40.000 0.00 0.00 0.00 2.74
3564 5056 6.152661 GTGATGAACACCCCTGATAAAAATGA 59.847 38.462 0.00 0.00 43.05 2.57
3569 5061 3.605634 CGTGATGAACACCCCTGATAAA 58.394 45.455 0.00 0.00 45.73 1.40
3574 5066 0.250727 AACCGTGATGAACACCCCTG 60.251 55.000 0.00 0.00 45.73 4.45
3627 5120 9.349145 GTACAAGAGTTTGAGCTTTTGTAAAAA 57.651 29.630 10.87 0.00 43.15 1.94
3660 5154 2.039084 ACAAGAGGCAACCAAGAGTAGG 59.961 50.000 0.00 0.00 37.17 3.18
3670 5164 3.502191 TTTGTGACAACAAGAGGCAAC 57.498 42.857 0.00 0.00 46.66 4.17
3685 5211 6.983890 AGGGTTGTAAGCATTTAGTTTTTGTG 59.016 34.615 0.00 0.00 0.00 3.33
3709 5235 8.666573 CCATTAGCTCATTGCAGAATTAGATAG 58.333 37.037 0.00 0.00 45.94 2.08
3799 5325 7.117236 GCAATCTTCATTTCAATTTCTGCAAGA 59.883 33.333 0.00 0.00 44.68 3.02
3816 5342 3.153369 TGGTAGCCTTTGCAATCTTCA 57.847 42.857 0.00 0.00 41.13 3.02
4252 6226 1.649321 AGGAATGCAGAGGACAGACA 58.351 50.000 0.00 0.00 0.00 3.41
4350 6324 3.947196 AGTGTTCAATCAAACAGACTGCA 59.053 39.130 1.25 0.00 39.69 4.41
4433 6418 0.108945 GCAAGAAAGATGCCACCTGC 60.109 55.000 0.00 0.00 37.85 4.85
4499 6484 2.725203 TTTCCGAAGTGCCCACCTCG 62.725 60.000 11.39 11.39 42.95 4.63
4513 6498 7.832550 TGAAACAATTCGTAACAAAATTTCCG 58.167 30.769 0.00 0.00 38.46 4.30
4608 6594 0.099436 CCTTTAAGCCGATGCACTGC 59.901 55.000 0.00 0.00 41.13 4.40
4647 6633 1.003233 AGGGAGTAAAACAAGAGGCCG 59.997 52.381 0.00 0.00 0.00 6.13
4728 6714 9.322773 TGCTTTGAATGAAAAATTGTTGTGATA 57.677 25.926 0.00 0.00 0.00 2.15
4729 6715 8.124199 GTGCTTTGAATGAAAAATTGTTGTGAT 58.876 29.630 0.00 0.00 0.00 3.06
4730 6716 7.118825 TGTGCTTTGAATGAAAAATTGTTGTGA 59.881 29.630 0.00 0.00 0.00 3.58
4731 6717 7.242079 TGTGCTTTGAATGAAAAATTGTTGTG 58.758 30.769 0.00 0.00 0.00 3.33
4732 6718 7.375106 TGTGCTTTGAATGAAAAATTGTTGT 57.625 28.000 0.00 0.00 0.00 3.32
4733 6719 7.911205 ACATGTGCTTTGAATGAAAAATTGTTG 59.089 29.630 0.00 0.00 0.00 3.33
4734 6720 7.987649 ACATGTGCTTTGAATGAAAAATTGTT 58.012 26.923 0.00 0.00 0.00 2.83
4739 6725 7.765360 AGAGAAACATGTGCTTTGAATGAAAAA 59.235 29.630 0.00 0.00 0.00 1.94
4753 6739 5.050091 GGCACCGATATTAGAGAAACATGTG 60.050 44.000 0.00 0.00 0.00 3.21
4761 6747 5.598416 CCATATGGCACCGATATTAGAGA 57.402 43.478 9.29 0.00 0.00 3.10
4811 6798 4.769688 CAGCACATCCACCATAGAGTTAA 58.230 43.478 0.00 0.00 0.00 2.01
4869 6856 1.202475 GCGACCCATTTCTCTCCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
4871 6858 0.179070 GGCGACCCATTTCTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
4915 6902 6.128172 CCTCTGTTTGTTAGCCTCATTTACAG 60.128 42.308 0.00 0.00 33.58 2.74
5028 7016 2.567169 ACTGGTTCATGAAGACCGATGA 59.433 45.455 8.80 0.00 0.00 2.92
5098 7086 3.617263 CCACCAAGATTAGACTAACACGC 59.383 47.826 0.00 0.00 0.00 5.34
5124 7112 7.296628 AGTAGAAAAGAAGAGACACATGACT 57.703 36.000 0.00 0.00 0.00 3.41
5132 7120 5.047872 ACGGAGGAAGTAGAAAAGAAGAGAC 60.048 44.000 0.00 0.00 0.00 3.36
5177 7165 6.204882 ACATGTTTGACTTAGGACAAAGCTAC 59.795 38.462 2.92 0.00 37.65 3.58
5205 7197 4.395959 TTCTGTGGAGTTAGTCAAACGT 57.604 40.909 0.00 0.00 43.29 3.99
5206 7198 5.728351 TTTTCTGTGGAGTTAGTCAAACG 57.272 39.130 0.00 0.00 43.29 3.60
5218 7210 8.623903 GCTGATGTTCATATATTTTTCTGTGGA 58.376 33.333 0.00 0.00 0.00 4.02
5219 7211 8.627403 AGCTGATGTTCATATATTTTTCTGTGG 58.373 33.333 0.00 0.00 0.00 4.17
5311 7303 8.117813 ACCAACGACACTTATTTTGGATTTAT 57.882 30.769 5.69 0.00 39.33 1.40
5314 7306 6.399639 AACCAACGACACTTATTTTGGATT 57.600 33.333 5.69 0.00 39.33 3.01
5319 7319 7.641020 CGAACTAAAACCAACGACACTTATTTT 59.359 33.333 0.00 0.00 0.00 1.82
5326 7326 2.600556 GCCGAACTAAAACCAACGACAC 60.601 50.000 0.00 0.00 0.00 3.67
5330 7330 2.377880 GTTGCCGAACTAAAACCAACG 58.622 47.619 0.00 0.00 0.00 4.10
5345 7345 3.926821 TCCAAAATAAGTTCCGTTGCC 57.073 42.857 0.00 0.00 0.00 4.52
5346 7346 5.095490 CAGATCCAAAATAAGTTCCGTTGC 58.905 41.667 0.00 0.00 0.00 4.17
5352 7366 8.738645 ACATACTCCAGATCCAAAATAAGTTC 57.261 34.615 0.00 0.00 0.00 3.01
5353 7367 9.533831 AAACATACTCCAGATCCAAAATAAGTT 57.466 29.630 0.00 0.00 0.00 2.66
5418 7464 2.029020 AGATCTCGCAACAGCACAACTA 60.029 45.455 0.00 0.00 0.00 2.24
5419 7465 1.151668 GATCTCGCAACAGCACAACT 58.848 50.000 0.00 0.00 0.00 3.16
5420 7466 1.136141 CAGATCTCGCAACAGCACAAC 60.136 52.381 0.00 0.00 0.00 3.32
5421 7467 1.150827 CAGATCTCGCAACAGCACAA 58.849 50.000 0.00 0.00 0.00 3.33
5431 7541 1.364626 CCCTTGTGTGCAGATCTCGC 61.365 60.000 9.41 9.41 0.00 5.03
5434 7544 0.036952 CGACCCTTGTGTGCAGATCT 60.037 55.000 0.00 0.00 0.00 2.75
5461 7585 1.004918 CAGAACCCGTCCACTGTCC 60.005 63.158 0.00 0.00 0.00 4.02
5466 7590 2.140717 CTGTAAACAGAACCCGTCCAC 58.859 52.381 3.99 0.00 46.59 4.02
5481 7606 5.659079 AGTTGGAAAAATGGTTGGACTGTAA 59.341 36.000 0.00 0.00 0.00 2.41
5482 7607 5.068460 CAGTTGGAAAAATGGTTGGACTGTA 59.932 40.000 0.00 0.00 0.00 2.74
5493 7618 4.173036 ACCGTATGCAGTTGGAAAAATG 57.827 40.909 7.79 0.00 0.00 2.32
5501 7626 3.305110 GGTGAAAAACCGTATGCAGTTG 58.695 45.455 0.00 0.00 39.81 3.16
5520 7646 1.075305 TGCCTGCACATGACATGGT 59.925 52.632 19.39 2.84 33.60 3.55
5639 7813 6.347725 CCAACAGTATTAGAGTTGCAACAGTC 60.348 42.308 30.11 19.76 40.85 3.51
5698 7872 2.790433 TCACCATTTCTGTAACAGGGC 58.210 47.619 0.00 0.00 31.51 5.19
5755 7929 6.288294 TCAGAGCACACTGTTGTTTATACTT 58.712 36.000 0.00 0.00 38.79 2.24
5764 7938 4.332543 TGTAAACTTCAGAGCACACTGTTG 59.667 41.667 0.00 0.00 38.79 3.33
5765 7939 4.513442 TGTAAACTTCAGAGCACACTGTT 58.487 39.130 0.00 0.00 38.79 3.16
5766 7940 4.137116 TGTAAACTTCAGAGCACACTGT 57.863 40.909 0.00 0.00 38.79 3.55
5771 7945 7.078228 CCTTGTATTTGTAAACTTCAGAGCAC 58.922 38.462 0.00 0.00 0.00 4.40
5810 7984 4.858680 TGTGCGCGGACAACCCAA 62.859 61.111 31.66 6.54 34.14 4.12
5851 8025 1.180029 GTCCAACTAGCCGTCCTACA 58.820 55.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.