Multiple sequence alignment - TraesCS5B01G403600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G403600 chr5B 100.000 2748 0 0 1 2748 580126178 580123431 0.000000e+00 5075.0
1 TraesCS5B01G403600 chr5B 81.117 1128 132 51 1305 2395 580115558 580114475 0.000000e+00 828.0
2 TraesCS5B01G403600 chr5B 81.644 937 75 52 954 1840 580111710 580110821 0.000000e+00 688.0
3 TraesCS5B01G403600 chr5B 86.531 245 30 3 130 373 84623345 84623587 1.620000e-67 267.0
4 TraesCS5B01G403600 chr5B 97.727 132 3 0 380 511 567776214 567776083 7.660000e-56 228.0
5 TraesCS5B01G403600 chr5D 85.948 1587 115 54 858 2395 472769070 472767543 0.000000e+00 1596.0
6 TraesCS5B01G403600 chr5D 78.332 923 99 60 954 1840 472746172 472745315 1.140000e-138 503.0
7 TraesCS5B01G403600 chr5D 87.701 374 44 2 1 373 75912716 75913088 4.200000e-118 435.0
8 TraesCS5B01G403600 chr5D 97.727 132 3 0 380 511 461877332 461877201 7.660000e-56 228.0
9 TraesCS5B01G403600 chr5D 85.446 213 28 2 2183 2395 479446174 479446383 4.610000e-53 219.0
10 TraesCS5B01G403600 chr7D 91.981 848 64 2 1 847 403146060 403146904 0.000000e+00 1186.0
11 TraesCS5B01G403600 chr7D 84.839 310 40 7 544 847 403145808 403145500 3.440000e-79 305.0
12 TraesCS5B01G403600 chr7D 81.356 236 37 3 2515 2743 609013062 609012827 4.670000e-43 185.0
13 TraesCS5B01G403600 chr7D 87.671 146 16 1 2584 2729 104592181 104592324 4.710000e-38 169.0
14 TraesCS5B01G403600 chr7D 85.235 149 16 4 2515 2657 495721029 495721177 6.130000e-32 148.0
15 TraesCS5B01G403600 chr6D 91.627 848 70 1 1 847 29985474 29986321 0.000000e+00 1171.0
16 TraesCS5B01G403600 chr6D 83.072 319 42 10 542 851 29985228 29984913 2.080000e-71 279.0
17 TraesCS5B01G403600 chr5A 81.233 1492 153 62 960 2392 592520467 592519044 0.000000e+00 1086.0
18 TraesCS5B01G403600 chr5A 87.344 719 61 11 1781 2479 592425183 592424475 0.000000e+00 797.0
19 TraesCS5B01G403600 chr5A 81.416 565 52 29 1291 1840 592302727 592302201 1.970000e-111 412.0
20 TraesCS5B01G403600 chr5A 93.450 229 14 1 1305 1533 592474463 592474236 3.390000e-89 339.0
21 TraesCS5B01G403600 chr5A 86.854 213 26 1 2183 2395 598053060 598053270 1.270000e-58 237.0
22 TraesCS5B01G403600 chr5A 94.697 132 7 0 380 511 581622154 581622023 3.590000e-49 206.0
23 TraesCS5B01G403600 chr5A 74.342 304 66 10 2009 2308 365658084 365658379 4.810000e-23 119.0
24 TraesCS5B01G403600 chr5A 100.000 57 0 0 879 935 592520523 592520467 3.740000e-19 106.0
25 TraesCS5B01G403600 chr1B 88.848 825 71 11 1 807 298090732 298091553 0.000000e+00 994.0
26 TraesCS5B01G403600 chr2B 91.379 464 36 2 379 841 262908205 262907745 1.390000e-177 632.0
27 TraesCS5B01G403600 chr2B 88.797 241 24 3 7 246 262908443 262908205 2.680000e-75 292.0
28 TraesCS5B01G403600 chr2B 75.652 575 106 23 1835 2395 179789594 179789040 3.510000e-64 255.0
29 TraesCS5B01G403600 chr2B 83.562 146 18 2 2515 2654 326334995 326335140 6.170000e-27 132.0
30 TraesCS5B01G403600 chr3D 81.959 388 65 5 2009 2395 144306518 144306135 9.490000e-85 324.0
31 TraesCS5B01G403600 chr3D 83.688 141 17 2 2520 2654 495216455 495216315 7.990000e-26 128.0
32 TraesCS5B01G403600 chr3A 81.137 387 69 4 2009 2395 163938072 163937690 9.560000e-80 307.0
33 TraesCS5B01G403600 chr2D 76.000 575 101 24 1835 2395 125944097 125943546 2.100000e-66 263.0
34 TraesCS5B01G403600 chr2D 84.507 142 16 2 2519 2654 106163323 106163182 4.770000e-28 135.0
35 TraesCS5B01G403600 chr1A 81.931 321 37 14 536 847 466282554 466282862 4.540000e-63 252.0
36 TraesCS5B01G403600 chr1A 76.240 484 91 16 1843 2308 518870772 518870295 4.580000e-58 235.0
37 TraesCS5B01G403600 chr6A 82.624 282 44 5 570 847 428611030 428611310 7.600000e-61 244.0
38 TraesCS5B01G403600 chr6A 82.270 282 44 6 570 847 428596876 428597155 3.540000e-59 239.0
39 TraesCS5B01G403600 chr6B 82.128 235 36 5 2515 2743 545437803 545437569 2.160000e-46 196.0
40 TraesCS5B01G403600 chr6B 83.893 149 18 2 2515 2657 365307834 365307982 1.330000e-28 137.0
41 TraesCS5B01G403600 chr1D 82.530 166 23 3 2514 2673 362059358 362059193 1.030000e-29 141.0
42 TraesCS5B01G403600 chr1D 83.893 149 18 2 2515 2657 362791511 362791659 1.330000e-28 137.0
43 TraesCS5B01G403600 chr2A 90.588 85 8 0 763 847 696279633 696279549 2.240000e-21 113.0
44 TraesCS5B01G403600 chr2A 91.304 46 2 2 2397 2441 765397492 765397536 8.220000e-06 62.1
45 TraesCS5B01G403600 chr4B 91.358 81 7 0 2399 2479 25390532 25390452 8.040000e-21 111.0
46 TraesCS5B01G403600 chr7B 91.026 78 7 0 2402 2479 14065967 14066044 3.740000e-19 106.0
47 TraesCS5B01G403600 chr7B 97.059 34 1 0 2401 2434 622171962 622171995 1.060000e-04 58.4
48 TraesCS5B01G403600 chr7A 87.931 58 7 0 2389 2446 139470492 139470435 4.910000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G403600 chr5B 580123431 580126178 2747 True 5075 5075 100.0000 1 2748 1 chr5B.!!$R2 2747
1 TraesCS5B01G403600 chr5B 580110821 580115558 4737 True 758 828 81.3805 954 2395 2 chr5B.!!$R3 1441
2 TraesCS5B01G403600 chr5D 472767543 472769070 1527 True 1596 1596 85.9480 858 2395 1 chr5D.!!$R3 1537
3 TraesCS5B01G403600 chr5D 472745315 472746172 857 True 503 503 78.3320 954 1840 1 chr5D.!!$R2 886
4 TraesCS5B01G403600 chr7D 403146060 403146904 844 False 1186 1186 91.9810 1 847 1 chr7D.!!$F2 846
5 TraesCS5B01G403600 chr6D 29985474 29986321 847 False 1171 1171 91.6270 1 847 1 chr6D.!!$F1 846
6 TraesCS5B01G403600 chr5A 592424475 592425183 708 True 797 797 87.3440 1781 2479 1 chr5A.!!$R3 698
7 TraesCS5B01G403600 chr5A 592519044 592520523 1479 True 596 1086 90.6165 879 2392 2 chr5A.!!$R5 1513
8 TraesCS5B01G403600 chr5A 592302201 592302727 526 True 412 412 81.4160 1291 1840 1 chr5A.!!$R2 549
9 TraesCS5B01G403600 chr1B 298090732 298091553 821 False 994 994 88.8480 1 807 1 chr1B.!!$F1 806
10 TraesCS5B01G403600 chr2B 262907745 262908443 698 True 462 632 90.0880 7 841 2 chr2B.!!$R2 834
11 TraesCS5B01G403600 chr2B 179789040 179789594 554 True 255 255 75.6520 1835 2395 1 chr2B.!!$R1 560
12 TraesCS5B01G403600 chr2D 125943546 125944097 551 True 263 263 76.0000 1835 2395 1 chr2D.!!$R2 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 595 0.105555 ATGCCAGAGAGAGGGAGGAG 60.106 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 3162 0.324183 CCACACCCAACCCATGCATA 60.324 55.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 1.285023 GAGTCGTACACCAGCACGT 59.715 57.895 0.00 0.00 39.18 4.49
169 171 4.135153 CAGCGTCTCGGACCCTGG 62.135 72.222 9.53 0.00 35.55 4.45
197 199 1.753463 CCGGGAGAAGTACTCGGCT 60.753 63.158 6.98 0.30 45.76 5.52
319 321 2.220586 TGGAGACGAACATGGGGCA 61.221 57.895 0.00 0.00 0.00 5.36
366 368 1.026718 CAGCTCCAACATCGGGTTCC 61.027 60.000 0.00 0.00 37.72 3.62
375 377 1.918293 ATCGGGTTCCTGTGGCTCA 60.918 57.895 0.00 0.00 0.00 4.26
396 398 0.306533 GGTGTCAAATGCAACGACGT 59.693 50.000 0.00 0.00 32.17 4.34
531 533 3.345808 GTGGAACAAGCGCGCAGA 61.346 61.111 35.10 6.21 44.16 4.26
532 534 2.590291 TGGAACAAGCGCGCAGAA 60.590 55.556 35.10 8.24 31.92 3.02
573 593 1.211456 AAATGCCAGAGAGAGGGAGG 58.789 55.000 0.00 0.00 0.00 4.30
574 594 0.341258 AATGCCAGAGAGAGGGAGGA 59.659 55.000 0.00 0.00 0.00 3.71
575 595 0.105555 ATGCCAGAGAGAGGGAGGAG 60.106 60.000 0.00 0.00 0.00 3.69
594 614 5.287864 AGGAGAAGGAGGAAGAAGAATGAT 58.712 41.667 0.00 0.00 0.00 2.45
625 645 1.021968 ACTTGTCAAAGCGGTCAACC 58.978 50.000 0.00 0.00 36.84 3.77
631 651 1.068895 TCAAAGCGGTCAACCTAACGA 59.931 47.619 0.00 0.00 0.00 3.85
667 687 2.821969 GTTGACTTTCCTGCCACATCAT 59.178 45.455 0.00 0.00 0.00 2.45
695 715 2.440147 TGGGCCCCACTTGTCATG 59.560 61.111 22.27 0.00 0.00 3.07
817 838 5.358725 AGTGTTAATTTCTGGACACGGTTTT 59.641 36.000 0.00 0.00 45.20 2.43
819 840 6.634035 GTGTTAATTTCTGGACACGGTTTTAC 59.366 38.462 0.00 0.00 33.88 2.01
857 878 3.525268 GGTTAAATACCCGGACGAGAA 57.475 47.619 0.73 0.00 41.43 2.87
858 879 3.190079 GGTTAAATACCCGGACGAGAAC 58.810 50.000 0.73 0.00 41.43 3.01
859 880 3.368323 GGTTAAATACCCGGACGAGAACA 60.368 47.826 0.73 0.00 41.43 3.18
860 881 2.375173 AAATACCCGGACGAGAACAC 57.625 50.000 0.73 0.00 0.00 3.32
861 882 1.259609 AATACCCGGACGAGAACACA 58.740 50.000 0.73 0.00 0.00 3.72
862 883 1.259609 ATACCCGGACGAGAACACAA 58.740 50.000 0.73 0.00 0.00 3.33
863 884 1.259609 TACCCGGACGAGAACACAAT 58.740 50.000 0.73 0.00 0.00 2.71
864 885 0.320421 ACCCGGACGAGAACACAATG 60.320 55.000 0.73 0.00 0.00 2.82
946 967 3.120269 GCAAGCTCACTGAATTCTGAGTG 60.120 47.826 20.05 18.23 40.89 3.51
1000 1022 0.464373 ACAGGCACAAGACACTGGTG 60.464 55.000 0.00 0.00 38.37 4.17
1014 1036 0.604780 CTGGTGCCAACTCACTCCTG 60.605 60.000 0.00 0.00 37.16 3.86
1019 1041 1.673665 CCAACTCACTCCTGCAGCC 60.674 63.158 8.66 0.00 0.00 4.85
1213 1262 4.946772 TCAGTTCAAGTCACAACCATTTCA 59.053 37.500 0.00 0.00 0.00 2.69
1223 1272 6.757947 AGTCACAACCATTTCACTTTCATTTG 59.242 34.615 0.00 0.00 0.00 2.32
1230 1279 5.107220 CCATTTCACTTTCATTTGCTTCTGC 60.107 40.000 0.00 0.00 40.20 4.26
1236 1285 2.933495 TCATTTGCTTCTGCTCATGC 57.067 45.000 0.00 0.00 40.48 4.06
1238 1287 0.179145 ATTTGCTTCTGCTCATGCGC 60.179 50.000 0.00 0.00 43.34 6.09
1248 1297 1.079612 CTCATGCGCCTGTCTGTCA 60.080 57.895 12.54 0.00 0.00 3.58
1299 1368 2.103094 TCGCTGCCATCTATGCTAACTT 59.897 45.455 0.00 0.00 0.00 2.66
1461 1534 1.071471 CAACAAGGACGAGTGCCCT 59.929 57.895 0.00 0.00 0.00 5.19
1485 1558 4.351938 CGCGACAAGACCACCGGA 62.352 66.667 9.46 0.00 0.00 5.14
1521 1594 2.484062 GCCCAAGTGCCCATGATCG 61.484 63.158 0.00 0.00 0.00 3.69
1550 1670 3.758715 CATGGCGTCTACATGGTGA 57.241 52.632 0.00 0.00 41.46 4.02
1551 1671 2.245159 CATGGCGTCTACATGGTGAT 57.755 50.000 0.00 0.00 41.46 3.06
1552 1672 1.869132 CATGGCGTCTACATGGTGATG 59.131 52.381 0.00 1.36 41.46 3.07
1553 1673 0.177836 TGGCGTCTACATGGTGATGG 59.822 55.000 0.00 0.00 33.39 3.51
1554 1674 0.532862 GGCGTCTACATGGTGATGGG 60.533 60.000 0.00 0.00 33.39 4.00
1555 1675 0.532862 GCGTCTACATGGTGATGGGG 60.533 60.000 0.00 0.00 33.39 4.96
1556 1676 1.119684 CGTCTACATGGTGATGGGGA 58.880 55.000 0.00 0.00 33.39 4.81
1557 1677 1.694150 CGTCTACATGGTGATGGGGAT 59.306 52.381 0.00 0.00 33.39 3.85
1558 1678 2.897326 CGTCTACATGGTGATGGGGATA 59.103 50.000 0.00 0.00 33.39 2.59
1634 1754 7.913423 TGTCGCGGATCACTACTATATTATAC 58.087 38.462 6.13 0.00 0.00 1.47
1635 1755 7.062240 GTCGCGGATCACTACTATATTATACG 58.938 42.308 6.13 0.00 0.00 3.06
1636 1756 6.201615 TCGCGGATCACTACTATATTATACGG 59.798 42.308 6.13 0.00 0.00 4.02
1637 1757 6.201615 CGCGGATCACTACTATATTATACGGA 59.798 42.308 0.00 0.00 0.00 4.69
1638 1758 7.569043 CGCGGATCACTACTATATTATACGGAG 60.569 44.444 0.00 0.00 0.00 4.63
1665 1786 4.034394 GCGTGTAAATCATGATCTGAAGCA 59.966 41.667 9.06 0.49 37.44 3.91
1666 1787 5.735324 CGTGTAAATCATGATCTGAAGCAG 58.265 41.667 9.06 0.00 37.44 4.24
1667 1788 5.277202 CGTGTAAATCATGATCTGAAGCAGG 60.277 44.000 9.06 5.14 37.44 4.85
1668 1789 5.008415 GTGTAAATCATGATCTGAAGCAGGG 59.992 44.000 9.06 0.00 37.44 4.45
1669 1790 2.273538 ATCATGATCTGAAGCAGGGC 57.726 50.000 1.18 0.00 37.44 5.19
1670 1791 1.210538 TCATGATCTGAAGCAGGGCT 58.789 50.000 0.00 0.00 42.56 5.19
1671 1792 1.140452 TCATGATCTGAAGCAGGGCTC 59.860 52.381 0.00 0.00 38.25 4.70
1673 1794 0.540454 TGATCTGAAGCAGGGCTCTG 59.460 55.000 10.01 10.01 38.25 3.35
1674 1795 0.540923 GATCTGAAGCAGGGCTCTGT 59.459 55.000 16.66 0.00 42.78 3.41
1675 1796 0.252479 ATCTGAAGCAGGGCTCTGTG 59.748 55.000 16.66 1.07 42.78 3.66
1676 1797 1.123861 TCTGAAGCAGGGCTCTGTGT 61.124 55.000 16.66 2.70 42.78 3.72
1677 1798 0.610174 CTGAAGCAGGGCTCTGTGTA 59.390 55.000 16.66 0.00 42.78 2.90
1678 1799 1.002430 CTGAAGCAGGGCTCTGTGTAA 59.998 52.381 16.66 0.00 42.78 2.41
1679 1800 1.419762 TGAAGCAGGGCTCTGTGTAAA 59.580 47.619 16.66 0.00 42.78 2.01
1680 1801 2.040278 TGAAGCAGGGCTCTGTGTAAAT 59.960 45.455 16.66 0.00 42.78 1.40
1681 1802 2.409948 AGCAGGGCTCTGTGTAAATC 57.590 50.000 16.66 0.00 42.78 2.17
1682 1803 1.630369 AGCAGGGCTCTGTGTAAATCA 59.370 47.619 16.66 0.00 42.78 2.57
1683 1804 2.240667 AGCAGGGCTCTGTGTAAATCAT 59.759 45.455 16.66 0.00 42.78 2.45
1684 1805 2.357009 GCAGGGCTCTGTGTAAATCATG 59.643 50.000 16.66 0.00 42.78 3.07
1685 1806 3.877559 CAGGGCTCTGTGTAAATCATGA 58.122 45.455 5.06 0.00 36.30 3.07
1686 1807 4.458397 CAGGGCTCTGTGTAAATCATGAT 58.542 43.478 5.06 1.18 36.30 2.45
1687 1808 4.514441 CAGGGCTCTGTGTAAATCATGATC 59.486 45.833 9.06 0.00 36.30 2.92
1698 1819 2.360553 ATCATGATCGATCCGACTGC 57.639 50.000 22.31 0.00 39.18 4.40
1750 1875 4.097135 TGGTATGCCGGTAAAAATGTCATG 59.903 41.667 1.90 0.00 37.67 3.07
1751 1876 4.336993 GGTATGCCGGTAAAAATGTCATGA 59.663 41.667 1.90 0.00 0.00 3.07
1752 1877 4.637483 ATGCCGGTAAAAATGTCATGAG 57.363 40.909 1.90 0.00 0.00 2.90
1753 1878 2.163412 TGCCGGTAAAAATGTCATGAGC 59.837 45.455 1.90 0.00 0.00 4.26
1754 1879 2.163412 GCCGGTAAAAATGTCATGAGCA 59.837 45.455 1.90 0.00 0.00 4.26
1755 1880 3.366883 GCCGGTAAAAATGTCATGAGCAA 60.367 43.478 1.90 0.00 0.00 3.91
1756 1881 4.804108 CCGGTAAAAATGTCATGAGCAAA 58.196 39.130 0.00 0.00 0.00 3.68
1758 1883 5.289193 CCGGTAAAAATGTCATGAGCAAATG 59.711 40.000 0.00 0.00 0.00 2.32
1759 1884 5.863397 CGGTAAAAATGTCATGAGCAAATGT 59.137 36.000 0.00 0.00 0.00 2.71
1760 1885 6.033831 CGGTAAAAATGTCATGAGCAAATGTC 59.966 38.462 0.00 0.00 0.00 3.06
1761 1886 6.867816 GGTAAAAATGTCATGAGCAAATGTCA 59.132 34.615 0.00 2.17 31.70 3.58
1762 1887 7.546667 GGTAAAAATGTCATGAGCAAATGTCAT 59.453 33.333 0.00 5.83 37.74 3.06
1763 1888 7.972832 AAAAATGTCATGAGCAAATGTCATT 57.027 28.000 14.08 14.08 43.47 2.57
1764 1889 6.961359 AAATGTCATGAGCAAATGTCATTG 57.039 33.333 17.93 0.00 41.95 2.82
1765 1890 5.654603 ATGTCATGAGCAAATGTCATTGT 57.345 34.783 0.00 0.00 34.13 2.71
1766 1891 6.762702 ATGTCATGAGCAAATGTCATTGTA 57.237 33.333 0.00 0.00 34.13 2.41
1767 1892 6.572167 TGTCATGAGCAAATGTCATTGTAA 57.428 33.333 0.00 0.00 32.06 2.41
1768 1893 7.160547 TGTCATGAGCAAATGTCATTGTAAT 57.839 32.000 0.00 0.00 32.06 1.89
1769 1894 7.030768 TGTCATGAGCAAATGTCATTGTAATG 58.969 34.615 0.00 0.00 32.06 1.90
1770 1895 7.031372 GTCATGAGCAAATGTCATTGTAATGT 58.969 34.615 0.00 0.00 37.65 2.71
1772 1897 8.738106 TCATGAGCAAATGTCATTGTAATGTAA 58.262 29.630 0.00 0.00 37.65 2.41
1775 1900 9.190858 TGAGCAAATGTCATTGTAATGTAAAAC 57.809 29.630 0.00 0.00 37.65 2.43
1799 1924 6.752351 ACAAACTATCACGCATTAGTAGAGTG 59.248 38.462 0.00 0.00 0.00 3.51
1884 2028 5.371115 TTCAAAAGGTGAAGCTTTATCCG 57.629 39.130 0.00 0.00 41.47 4.18
1953 2097 3.499737 CGGGAGTGACATTGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
1989 2134 8.451748 GGTATAACATTTCCTTCTCTTGTTCAC 58.548 37.037 0.00 0.00 33.03 3.18
2045 2199 7.735917 TGTTGGTTTCATCTCTATATGTAGGG 58.264 38.462 0.00 0.00 0.00 3.53
2050 2204 8.877195 GGTTTCATCTCTATATGTAGGGGTTTA 58.123 37.037 0.00 0.00 0.00 2.01
2083 2239 7.004086 TGATATCTTTAAGGTTTAGCATGGGG 58.996 38.462 3.98 0.00 0.00 4.96
2084 2240 4.938575 TCTTTAAGGTTTAGCATGGGGA 57.061 40.909 0.00 0.00 0.00 4.81
2121 2277 6.767423 CCTTGGGTCATTGTTGAAGAAAAATT 59.233 34.615 0.00 0.00 32.48 1.82
2127 2285 8.476925 GGTCATTGTTGAAGAAAAATTTACGAC 58.523 33.333 0.00 0.00 32.48 4.34
2148 2306 2.820197 CTCCCCAAAGTTTAAGGAGCAC 59.180 50.000 16.25 0.00 37.88 4.40
2313 2473 3.430453 GGTTCATGACCCAAAATGAGGA 58.570 45.455 4.06 0.00 43.06 3.71
2333 2500 4.522789 AGGAGTCAAGTGAGAAGAGAGAAC 59.477 45.833 0.00 0.00 0.00 3.01
2371 2538 1.561643 AAGAGGAGGCGATGAAGACA 58.438 50.000 0.00 0.00 0.00 3.41
2372 2539 0.820871 AGAGGAGGCGATGAAGACAC 59.179 55.000 0.00 0.00 0.00 3.67
2384 2551 5.005203 GCGATGAAGACACTCTTTGACATAG 59.995 44.000 0.00 0.00 36.73 2.23
2395 2562 9.566432 ACACTCTTTGACATAGAAAAGAAGAAT 57.434 29.630 0.00 0.00 40.80 2.40
2397 2564 9.225436 ACTCTTTGACATAGAAAAGAAGAATCC 57.775 33.333 0.00 0.00 40.80 3.01
2404 2571 9.631452 GACATAGAAAAGAAGAATCCAAAAAGG 57.369 33.333 0.00 0.00 39.47 3.11
2445 3096 2.981400 AAAGCAATACGACCAAACCG 57.019 45.000 0.00 0.00 0.00 4.44
2453 3104 5.556470 CAATACGACCAAACCGATACAAAG 58.444 41.667 0.00 0.00 0.00 2.77
2462 3113 4.819105 AACCGATACAAAGTGATGAGGA 57.181 40.909 0.00 0.00 0.00 3.71
2479 3130 4.022413 GAGGAAACCCTCTTACAAAGCT 57.978 45.455 4.32 0.00 45.36 3.74
2483 3134 5.946377 AGGAAACCCTCTTACAAAGCTAATG 59.054 40.000 0.00 0.00 0.00 1.90
2484 3135 5.944007 GGAAACCCTCTTACAAAGCTAATGA 59.056 40.000 6.45 0.00 0.00 2.57
2486 3137 7.773690 GGAAACCCTCTTACAAAGCTAATGATA 59.226 37.037 6.45 0.00 0.00 2.15
2487 3138 8.738645 AAACCCTCTTACAAAGCTAATGATAG 57.261 34.615 6.45 3.70 0.00 2.08
2488 3139 7.439108 ACCCTCTTACAAAGCTAATGATAGT 57.561 36.000 6.45 0.00 0.00 2.12
2489 3140 8.548880 ACCCTCTTACAAAGCTAATGATAGTA 57.451 34.615 6.45 0.00 0.00 1.82
2490 3141 8.989131 ACCCTCTTACAAAGCTAATGATAGTAA 58.011 33.333 6.45 0.00 0.00 2.24
2502 3153 9.911788 AGCTAATGATAGTAATTTATCCATGGG 57.088 33.333 13.02 0.00 30.56 4.00
2503 3154 9.686683 GCTAATGATAGTAATTTATCCATGGGT 57.313 33.333 13.02 7.52 30.56 4.51
2506 3157 9.667107 AATGATAGTAATTTATCCATGGGTACG 57.333 33.333 13.02 0.00 30.56 3.67
2507 3158 7.617225 TGATAGTAATTTATCCATGGGTACGG 58.383 38.462 13.02 0.00 30.56 4.02
2508 3159 5.237236 AGTAATTTATCCATGGGTACGGG 57.763 43.478 13.02 0.00 0.00 5.28
2509 3160 4.661709 AGTAATTTATCCATGGGTACGGGT 59.338 41.667 13.02 0.00 0.00 5.28
2510 3161 5.845614 AGTAATTTATCCATGGGTACGGGTA 59.154 40.000 13.02 0.00 0.00 3.69
2511 3162 5.853572 AATTTATCCATGGGTACGGGTAT 57.146 39.130 13.02 0.00 0.00 2.73
2512 3163 6.956102 AATTTATCCATGGGTACGGGTATA 57.044 37.500 13.02 0.00 0.00 1.47
2513 3164 7.519347 AATTTATCCATGGGTACGGGTATAT 57.481 36.000 13.02 0.00 0.00 0.86
2514 3165 5.943349 TTATCCATGGGTACGGGTATATG 57.057 43.478 13.02 0.00 0.00 1.78
2515 3166 1.903860 TCCATGGGTACGGGTATATGC 59.096 52.381 13.02 0.00 0.00 3.14
2516 3167 1.626321 CCATGGGTACGGGTATATGCA 59.374 52.381 2.85 0.00 0.00 3.96
2517 3168 2.238646 CCATGGGTACGGGTATATGCAT 59.761 50.000 2.85 3.79 0.00 3.96
2518 3169 3.270027 CATGGGTACGGGTATATGCATG 58.730 50.000 10.16 0.00 0.00 4.06
2519 3170 1.626321 TGGGTACGGGTATATGCATGG 59.374 52.381 10.16 0.00 0.00 3.66
2520 3171 1.065709 GGGTACGGGTATATGCATGGG 60.066 57.143 10.16 0.00 0.00 4.00
2521 3172 1.626825 GGTACGGGTATATGCATGGGT 59.373 52.381 10.16 0.00 0.00 4.51
2522 3173 2.039348 GGTACGGGTATATGCATGGGTT 59.961 50.000 10.16 0.00 0.00 4.11
2523 3174 2.270352 ACGGGTATATGCATGGGTTG 57.730 50.000 10.16 0.00 0.00 3.77
2524 3175 1.202879 ACGGGTATATGCATGGGTTGG 60.203 52.381 10.16 0.00 0.00 3.77
2525 3176 1.886222 CGGGTATATGCATGGGTTGGG 60.886 57.143 10.16 0.00 0.00 4.12
2526 3177 1.146982 GGGTATATGCATGGGTTGGGT 59.853 52.381 10.16 0.00 0.00 4.51
2527 3178 2.238521 GGTATATGCATGGGTTGGGTG 58.761 52.381 10.16 0.00 0.00 4.61
2531 3182 3.694538 GCATGGGTTGGGTGTGGC 61.695 66.667 0.00 0.00 0.00 5.01
2535 3186 2.996734 GGGTTGGGTGTGGCCATG 60.997 66.667 9.72 0.00 39.65 3.66
2537 3188 1.305213 GGTTGGGTGTGGCCATGAT 60.305 57.895 9.72 0.00 39.65 2.45
2540 3191 1.347378 GTTGGGTGTGGCCATGATTTT 59.653 47.619 9.72 0.00 39.65 1.82
2544 3195 3.957497 TGGGTGTGGCCATGATTTTATAC 59.043 43.478 9.72 0.00 39.65 1.47
2563 3214 1.434188 CCCATGGGTAGTATCCTGCA 58.566 55.000 23.93 0.00 0.00 4.41
2564 3215 1.072331 CCCATGGGTAGTATCCTGCAC 59.928 57.143 23.93 0.00 0.00 4.57
2565 3216 1.270305 CCATGGGTAGTATCCTGCACG 60.270 57.143 2.85 0.00 27.58 5.34
2566 3217 1.412710 CATGGGTAGTATCCTGCACGT 59.587 52.381 0.04 0.00 27.58 4.49
2568 3219 2.737544 TGGGTAGTATCCTGCACGTTA 58.262 47.619 0.04 0.00 27.58 3.18
2569 3220 3.098377 TGGGTAGTATCCTGCACGTTAA 58.902 45.455 0.04 0.00 27.58 2.01
2570 3221 3.131577 TGGGTAGTATCCTGCACGTTAAG 59.868 47.826 0.04 0.00 27.58 1.85
2571 3222 3.131755 GGGTAGTATCCTGCACGTTAAGT 59.868 47.826 0.00 0.00 0.00 2.24
2573 3224 5.163519 GGGTAGTATCCTGCACGTTAAGTTA 60.164 44.000 0.00 0.00 0.00 2.24
2574 3225 6.462067 GGGTAGTATCCTGCACGTTAAGTTAT 60.462 42.308 0.00 0.00 0.00 1.89
2575 3226 6.420008 GGTAGTATCCTGCACGTTAAGTTATG 59.580 42.308 0.00 0.00 0.00 1.90
2576 3227 5.357257 AGTATCCTGCACGTTAAGTTATGG 58.643 41.667 0.00 0.00 0.00 2.74
2577 3228 2.980568 TCCTGCACGTTAAGTTATGGG 58.019 47.619 0.00 0.00 0.00 4.00
2578 3229 2.303600 TCCTGCACGTTAAGTTATGGGT 59.696 45.455 0.00 0.00 0.00 4.51
2579 3230 3.514706 TCCTGCACGTTAAGTTATGGGTA 59.485 43.478 0.00 0.00 0.00 3.69
2581 3232 4.382254 CCTGCACGTTAAGTTATGGGTAGA 60.382 45.833 5.06 0.00 0.00 2.59
2583 3234 3.554731 GCACGTTAAGTTATGGGTAGAGC 59.445 47.826 0.00 0.00 0.00 4.09
2586 3237 5.234329 CACGTTAAGTTATGGGTAGAGCATG 59.766 44.000 0.00 0.00 0.00 4.06
2587 3238 5.128171 ACGTTAAGTTATGGGTAGAGCATGA 59.872 40.000 0.00 0.00 0.00 3.07
2588 3239 5.692204 CGTTAAGTTATGGGTAGAGCATGAG 59.308 44.000 0.00 0.00 0.00 2.90
2590 3241 7.469594 CGTTAAGTTATGGGTAGAGCATGAGTA 60.470 40.741 0.00 0.00 0.00 2.59
2591 3242 8.368668 GTTAAGTTATGGGTAGAGCATGAGTAT 58.631 37.037 0.00 0.00 0.00 2.12
2592 3243 9.596308 TTAAGTTATGGGTAGAGCATGAGTATA 57.404 33.333 0.00 0.00 0.00 1.47
2594 3245 6.153680 AGTTATGGGTAGAGCATGAGTATAGC 59.846 42.308 0.00 0.00 0.00 2.97
2595 3246 3.165875 TGGGTAGAGCATGAGTATAGCC 58.834 50.000 0.00 4.18 35.15 3.93
2596 3247 3.181417 TGGGTAGAGCATGAGTATAGCCT 60.181 47.826 15.37 0.00 35.52 4.58
2597 3248 3.835395 GGGTAGAGCATGAGTATAGCCTT 59.165 47.826 0.00 0.00 32.52 4.35
2598 3249 4.322349 GGGTAGAGCATGAGTATAGCCTTG 60.322 50.000 0.00 0.00 32.52 3.61
2600 3251 5.477291 GGTAGAGCATGAGTATAGCCTTGTA 59.523 44.000 0.00 0.00 0.00 2.41
2601 3252 5.461032 AGAGCATGAGTATAGCCTTGTAC 57.539 43.478 0.00 0.00 0.00 2.90
2602 3253 4.282195 AGAGCATGAGTATAGCCTTGTACC 59.718 45.833 0.00 0.00 0.00 3.34
2603 3254 3.325135 AGCATGAGTATAGCCTTGTACCC 59.675 47.826 0.00 0.00 0.00 3.69
2605 3256 3.022557 TGAGTATAGCCTTGTACCCGT 57.977 47.619 0.00 0.00 0.00 5.28
2606 3257 2.691526 TGAGTATAGCCTTGTACCCGTG 59.308 50.000 0.00 0.00 0.00 4.94
2607 3258 2.035576 GAGTATAGCCTTGTACCCGTGG 59.964 54.545 0.00 0.00 0.00 4.94
2608 3259 2.034124 GTATAGCCTTGTACCCGTGGA 58.966 52.381 0.00 0.00 0.00 4.02
2618 3689 4.401048 TGTACCCGTGGATATACCCATA 57.599 45.455 0.00 0.00 38.66 2.74
2621 3692 1.835531 CCCGTGGATATACCCATACCC 59.164 57.143 0.00 0.00 38.66 3.69
2627 3698 3.303049 GGATATACCCATACCCTACCCG 58.697 54.545 0.00 0.00 0.00 5.28
2629 3700 2.801282 ATACCCATACCCTACCCGTT 57.199 50.000 0.00 0.00 0.00 4.44
2633 3704 4.212070 ACCCATACCCTACCCGTTTATA 57.788 45.455 0.00 0.00 0.00 0.98
2634 3705 4.162651 ACCCATACCCTACCCGTTTATAG 58.837 47.826 0.00 0.00 0.00 1.31
2637 3708 4.834496 CCATACCCTACCCGTTTATAGTGA 59.166 45.833 0.00 0.00 0.00 3.41
2638 3709 5.482878 CCATACCCTACCCGTTTATAGTGAT 59.517 44.000 0.00 0.00 0.00 3.06
2639 3710 6.664816 CCATACCCTACCCGTTTATAGTGATA 59.335 42.308 0.00 0.00 0.00 2.15
2640 3711 7.343833 CCATACCCTACCCGTTTATAGTGATAT 59.656 40.741 0.00 0.00 0.00 1.63
2641 3712 6.600882 ACCCTACCCGTTTATAGTGATATG 57.399 41.667 0.00 0.00 0.00 1.78
2642 3713 6.080009 ACCCTACCCGTTTATAGTGATATGT 58.920 40.000 0.00 0.00 0.00 2.29
2643 3714 6.014840 ACCCTACCCGTTTATAGTGATATGTG 60.015 42.308 0.00 0.00 0.00 3.21
2645 3716 6.209986 CCTACCCGTTTATAGTGATATGTGGA 59.790 42.308 0.00 0.00 0.00 4.02
2646 3717 5.850614 ACCCGTTTATAGTGATATGTGGAC 58.149 41.667 0.00 0.00 0.00 4.02
2647 3718 5.221581 ACCCGTTTATAGTGATATGTGGACC 60.222 44.000 0.00 0.00 0.00 4.46
2648 3719 5.011738 CCCGTTTATAGTGATATGTGGACCT 59.988 44.000 0.00 0.00 0.00 3.85
2650 3721 7.256048 CCCGTTTATAGTGATATGTGGACCTTA 60.256 40.741 0.00 0.00 0.00 2.69
2652 3723 7.597743 CGTTTATAGTGATATGTGGACCTTACC 59.402 40.741 0.00 0.00 0.00 2.85
2653 3724 7.549147 TTATAGTGATATGTGGACCTTACCC 57.451 40.000 0.00 0.00 0.00 3.69
2654 3725 2.698797 AGTGATATGTGGACCTTACCCG 59.301 50.000 0.00 0.00 0.00 5.28
2655 3726 2.433239 GTGATATGTGGACCTTACCCGT 59.567 50.000 0.00 0.00 0.00 5.28
2656 3727 2.432874 TGATATGTGGACCTTACCCGTG 59.567 50.000 0.00 0.00 0.00 4.94
2657 3728 1.196911 TATGTGGACCTTACCCGTGG 58.803 55.000 0.00 0.00 0.00 4.94
2658 3729 0.545787 ATGTGGACCTTACCCGTGGA 60.546 55.000 0.00 0.00 0.00 4.02
2660 3731 0.321034 GTGGACCTTACCCGTGGAAC 60.321 60.000 0.00 0.00 0.00 3.62
2661 3732 0.472352 TGGACCTTACCCGTGGAACT 60.472 55.000 0.00 0.00 31.75 3.01
2662 3733 0.248565 GGACCTTACCCGTGGAACTC 59.751 60.000 0.00 0.00 31.75 3.01
2663 3734 0.248565 GACCTTACCCGTGGAACTCC 59.751 60.000 0.00 0.00 31.75 3.85
2664 3735 0.472352 ACCTTACCCGTGGAACTCCA 60.472 55.000 0.00 0.00 45.30 3.86
2675 3746 1.339535 TGGAACTCCAACATATGCGCA 60.340 47.619 14.96 14.96 44.35 6.09
2676 3747 1.742831 GGAACTCCAACATATGCGCAA 59.257 47.619 17.11 4.13 35.64 4.85
2677 3748 2.223340 GGAACTCCAACATATGCGCAAG 60.223 50.000 17.11 10.55 35.64 4.01
2678 3749 1.382522 ACTCCAACATATGCGCAAGG 58.617 50.000 17.11 9.72 38.28 3.61
2679 3750 0.664761 CTCCAACATATGCGCAAGGG 59.335 55.000 17.11 9.30 38.28 3.95
2680 3751 0.034574 TCCAACATATGCGCAAGGGT 60.035 50.000 17.11 10.06 38.28 4.34
2681 3752 0.381801 CCAACATATGCGCAAGGGTC 59.618 55.000 17.11 0.00 38.28 4.46
2682 3753 0.027979 CAACATATGCGCAAGGGTCG 59.972 55.000 17.11 2.30 38.28 4.79
2683 3754 1.095228 AACATATGCGCAAGGGTCGG 61.095 55.000 17.11 2.37 38.28 4.79
2685 3756 0.249699 CATATGCGCAAGGGTCGGTA 60.250 55.000 17.11 0.00 38.28 4.02
2686 3757 0.033504 ATATGCGCAAGGGTCGGTAG 59.966 55.000 17.11 0.00 38.28 3.18
2687 3758 2.638330 TATGCGCAAGGGTCGGTAGC 62.638 60.000 17.11 0.00 38.28 3.58
2689 3760 4.430765 CGCAAGGGTCGGTAGCGT 62.431 66.667 14.79 0.00 43.08 5.07
2690 3761 2.508663 GCAAGGGTCGGTAGCGTC 60.509 66.667 14.79 8.73 0.00 5.19
2692 3763 1.290955 CAAGGGTCGGTAGCGTCAA 59.709 57.895 14.79 0.00 0.00 3.18
2693 3764 0.320073 CAAGGGTCGGTAGCGTCAAA 60.320 55.000 14.79 0.00 0.00 2.69
2694 3765 0.037605 AAGGGTCGGTAGCGTCAAAG 60.038 55.000 14.79 0.00 0.00 2.77
2696 3767 0.037975 GGGTCGGTAGCGTCAAAGAA 60.038 55.000 14.79 0.00 0.00 2.52
2697 3768 1.347320 GGTCGGTAGCGTCAAAGAAG 58.653 55.000 14.79 0.00 0.00 2.85
2698 3769 0.714439 GTCGGTAGCGTCAAAGAAGC 59.286 55.000 14.79 0.00 37.32 3.86
2700 3771 0.716108 CGGTAGCGTCAAAGAAGCTG 59.284 55.000 15.86 0.00 45.80 4.24
2701 3772 1.079503 GGTAGCGTCAAAGAAGCTGG 58.920 55.000 15.86 0.00 45.80 4.85
2702 3773 1.079503 GTAGCGTCAAAGAAGCTGGG 58.920 55.000 15.86 0.00 45.80 4.45
2705 3776 1.667830 CGTCAAAGAAGCTGGGCGA 60.668 57.895 0.00 0.00 0.00 5.54
2706 3777 1.869690 GTCAAAGAAGCTGGGCGAC 59.130 57.895 0.00 0.00 0.00 5.19
2730 4849 5.222337 CCCCACTATCCCCATAATTAAGCTT 60.222 44.000 3.48 3.48 0.00 3.74
2732 4851 6.467194 CCCACTATCCCCATAATTAAGCTTGA 60.467 42.308 9.86 0.00 0.00 3.02
2733 4852 6.431234 CCACTATCCCCATAATTAAGCTTGAC 59.569 42.308 9.86 0.00 0.00 3.18
2734 4853 6.998074 CACTATCCCCATAATTAAGCTTGACA 59.002 38.462 9.86 0.00 0.00 3.58
2736 4855 4.532834 TCCCCATAATTAAGCTTGACACC 58.467 43.478 9.86 0.00 0.00 4.16
2737 4856 4.017958 TCCCCATAATTAAGCTTGACACCA 60.018 41.667 9.86 0.00 0.00 4.17
2738 4857 4.709397 CCCCATAATTAAGCTTGACACCAA 59.291 41.667 9.86 0.00 0.00 3.67
2739 4858 5.394115 CCCCATAATTAAGCTTGACACCAAC 60.394 44.000 9.86 0.00 0.00 3.77
2740 4859 5.184864 CCCATAATTAAGCTTGACACCAACA 59.815 40.000 9.86 0.00 0.00 3.33
2741 4860 6.092748 CCATAATTAAGCTTGACACCAACAC 58.907 40.000 9.86 0.00 0.00 3.32
2742 4861 6.294453 CCATAATTAAGCTTGACACCAACACA 60.294 38.462 9.86 0.00 0.00 3.72
2744 4863 4.566545 TTAAGCTTGACACCAACACATG 57.433 40.909 9.86 0.00 0.00 3.21
2747 4866 3.550820 AGCTTGACACCAACACATGTAA 58.449 40.909 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.452618 CGCGGTAAACGTCGTCTACA 60.453 55.000 10.81 0.00 46.52 2.74
135 136 2.069465 CTGCGCGACCTCTGCTATCT 62.069 60.000 12.10 0.00 0.00 1.98
270 272 2.204151 CTCCTCCACCCAACCCCT 60.204 66.667 0.00 0.00 0.00 4.79
276 278 2.997315 CGTGCTCTCCTCCACCCA 60.997 66.667 0.00 0.00 0.00 4.51
355 357 2.185310 GAGCCACAGGAACCCGATGT 62.185 60.000 0.00 0.00 0.00 3.06
366 368 0.179020 TTTGACACCCTGAGCCACAG 60.179 55.000 2.06 2.06 45.36 3.66
375 377 0.951558 GTCGTTGCATTTGACACCCT 59.048 50.000 8.19 0.00 32.91 4.34
573 593 5.816777 CACATCATTCTTCTTCCTCCTTCTC 59.183 44.000 0.00 0.00 0.00 2.87
574 594 5.250313 ACACATCATTCTTCTTCCTCCTTCT 59.750 40.000 0.00 0.00 0.00 2.85
575 595 5.353678 CACACATCATTCTTCTTCCTCCTTC 59.646 44.000 0.00 0.00 0.00 3.46
608 628 2.614983 GTTAGGTTGACCGCTTTGACAA 59.385 45.455 0.00 0.00 42.08 3.18
614 634 1.069668 AGTTCGTTAGGTTGACCGCTT 59.930 47.619 0.00 0.00 42.08 4.68
625 645 4.741342 ACTCCGTTATTCCAGTTCGTTAG 58.259 43.478 0.00 0.00 0.00 2.34
631 651 4.618920 AGTCAACTCCGTTATTCCAGTT 57.381 40.909 0.00 0.00 0.00 3.16
695 715 8.340443 ACCAGTTTAGAAGATTTAAACACGTTC 58.660 33.333 9.67 0.00 41.31 3.95
797 818 5.757320 TCGTAAAACCGTGTCCAGAAATTAA 59.243 36.000 0.00 0.00 0.00 1.40
800 821 3.731089 TCGTAAAACCGTGTCCAGAAAT 58.269 40.909 0.00 0.00 0.00 2.17
817 838 6.696441 AACCAAAAACTACCACATTTCGTA 57.304 33.333 0.00 0.00 0.00 3.43
819 840 7.988904 TTTAACCAAAAACTACCACATTTCG 57.011 32.000 0.00 0.00 0.00 3.46
847 868 1.019278 CCCATTGTGTTCTCGTCCGG 61.019 60.000 0.00 0.00 0.00 5.14
848 869 1.019278 CCCCATTGTGTTCTCGTCCG 61.019 60.000 0.00 0.00 0.00 4.79
849 870 0.036306 ACCCCATTGTGTTCTCGTCC 59.964 55.000 0.00 0.00 0.00 4.79
850 871 1.892209 AACCCCATTGTGTTCTCGTC 58.108 50.000 0.00 0.00 0.00 4.20
851 872 2.358322 AAACCCCATTGTGTTCTCGT 57.642 45.000 0.00 0.00 0.00 4.18
852 873 3.317993 AGAAAAACCCCATTGTGTTCTCG 59.682 43.478 0.00 0.00 0.00 4.04
853 874 4.620982 CAGAAAAACCCCATTGTGTTCTC 58.379 43.478 0.00 0.00 0.00 2.87
854 875 3.181466 GCAGAAAAACCCCATTGTGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
855 876 3.130633 GCAGAAAAACCCCATTGTGTTC 58.869 45.455 0.00 0.00 0.00 3.18
856 877 2.158827 GGCAGAAAAACCCCATTGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
857 878 1.416030 GGCAGAAAAACCCCATTGTGT 59.584 47.619 0.00 0.00 0.00 3.72
858 879 1.693606 AGGCAGAAAAACCCCATTGTG 59.306 47.619 0.00 0.00 0.00 3.33
859 880 2.101640 AGGCAGAAAAACCCCATTGT 57.898 45.000 0.00 0.00 0.00 2.71
860 881 3.140623 CAAAGGCAGAAAAACCCCATTG 58.859 45.455 0.00 0.00 0.00 2.82
861 882 3.044894 TCAAAGGCAGAAAAACCCCATT 58.955 40.909 0.00 0.00 0.00 3.16
862 883 2.634453 CTCAAAGGCAGAAAAACCCCAT 59.366 45.455 0.00 0.00 0.00 4.00
863 884 2.038659 CTCAAAGGCAGAAAAACCCCA 58.961 47.619 0.00 0.00 0.00 4.96
864 885 1.270305 GCTCAAAGGCAGAAAAACCCC 60.270 52.381 0.00 0.00 0.00 4.95
946 967 0.317160 GCCCAAAAGCTTGTGGTACC 59.683 55.000 29.94 16.33 32.60 3.34
1000 1022 2.331132 GCTGCAGGAGTGAGTTGGC 61.331 63.158 17.12 0.00 0.00 4.52
1014 1036 1.524482 CTTGAGACTAGGGGGCTGC 59.476 63.158 0.00 0.00 30.21 5.25
1019 1041 1.205893 GTGTGAGCTTGAGACTAGGGG 59.794 57.143 0.00 0.00 0.00 4.79
1058 1090 1.597742 TCTTGAGTTGCTTGGCTCAC 58.402 50.000 0.00 0.00 40.91 3.51
1059 1091 1.949525 GTTCTTGAGTTGCTTGGCTCA 59.050 47.619 0.00 0.00 39.66 4.26
1184 1233 3.179443 TGTGACTTGAACTGACCTGAC 57.821 47.619 0.00 0.00 0.00 3.51
1213 1262 4.806330 CATGAGCAGAAGCAAATGAAAGT 58.194 39.130 0.00 0.00 45.49 2.66
1223 1272 2.823147 AGGCGCATGAGCAGAAGC 60.823 61.111 23.18 5.16 42.27 3.86
1230 1279 1.079612 TGACAGACAGGCGCATGAG 60.080 57.895 30.79 19.29 0.00 2.90
1248 1297 4.510340 ACAGCGAACGAACAAAAGATTACT 59.490 37.500 0.00 0.00 0.00 2.24
1299 1368 4.514585 AAGCACACCCACCGCCAA 62.515 61.111 0.00 0.00 0.00 4.52
1461 1534 1.373748 GGTCTTGTCGCGGTAGCAA 60.374 57.895 6.13 6.23 45.49 3.91
1548 1668 5.363124 TCAGGTAGGTATTATCCCCATCA 57.637 43.478 0.00 0.00 0.00 3.07
1550 1670 5.548056 CAGTTCAGGTAGGTATTATCCCCAT 59.452 44.000 0.00 0.00 0.00 4.00
1551 1671 4.905456 CAGTTCAGGTAGGTATTATCCCCA 59.095 45.833 0.00 0.00 0.00 4.96
1552 1672 4.286291 CCAGTTCAGGTAGGTATTATCCCC 59.714 50.000 0.00 0.00 0.00 4.81
1553 1673 5.152934 TCCAGTTCAGGTAGGTATTATCCC 58.847 45.833 0.00 0.00 0.00 3.85
1554 1674 6.553852 TCTTCCAGTTCAGGTAGGTATTATCC 59.446 42.308 0.00 0.00 0.00 2.59
1555 1675 7.598759 TCTTCCAGTTCAGGTAGGTATTATC 57.401 40.000 0.00 0.00 0.00 1.75
1556 1676 7.989947 TTCTTCCAGTTCAGGTAGGTATTAT 57.010 36.000 0.00 0.00 0.00 1.28
1557 1677 7.070821 GGATTCTTCCAGTTCAGGTAGGTATTA 59.929 40.741 0.00 0.00 42.12 0.98
1558 1678 6.126739 GGATTCTTCCAGTTCAGGTAGGTATT 60.127 42.308 0.00 0.00 42.12 1.89
1634 1754 4.048504 TCATGATTTACACGCATACTCCG 58.951 43.478 0.00 0.00 0.00 4.63
1635 1755 5.928839 AGATCATGATTTACACGCATACTCC 59.071 40.000 10.14 0.00 0.00 3.85
1636 1756 6.642540 TCAGATCATGATTTACACGCATACTC 59.357 38.462 10.14 0.00 31.12 2.59
1637 1757 6.515832 TCAGATCATGATTTACACGCATACT 58.484 36.000 10.14 0.00 31.12 2.12
1638 1758 6.769608 TCAGATCATGATTTACACGCATAC 57.230 37.500 10.14 0.00 31.12 2.39
1665 1786 4.712476 GATCATGATTTACACAGAGCCCT 58.288 43.478 10.14 0.00 0.00 5.19
1666 1787 3.496130 CGATCATGATTTACACAGAGCCC 59.504 47.826 10.14 0.00 0.00 5.19
1667 1788 4.371786 TCGATCATGATTTACACAGAGCC 58.628 43.478 10.14 0.00 0.00 4.70
1668 1789 5.119898 GGATCGATCATGATTTACACAGAGC 59.880 44.000 25.93 4.36 0.00 4.09
1669 1790 5.344396 CGGATCGATCATGATTTACACAGAG 59.656 44.000 25.93 0.00 0.00 3.35
1670 1791 5.009610 TCGGATCGATCATGATTTACACAGA 59.990 40.000 25.93 4.95 0.00 3.41
1671 1792 5.117745 GTCGGATCGATCATGATTTACACAG 59.882 44.000 25.93 2.81 38.42 3.66
1673 1794 5.117745 CAGTCGGATCGATCATGATTTACAC 59.882 44.000 25.93 10.77 38.42 2.90
1674 1795 5.222631 CAGTCGGATCGATCATGATTTACA 58.777 41.667 25.93 0.00 38.42 2.41
1675 1796 4.090642 GCAGTCGGATCGATCATGATTTAC 59.909 45.833 25.93 11.70 38.42 2.01
1676 1797 4.237724 GCAGTCGGATCGATCATGATTTA 58.762 43.478 25.93 1.37 38.42 1.40
1677 1798 3.062763 GCAGTCGGATCGATCATGATTT 58.937 45.455 25.93 12.59 38.42 2.17
1678 1799 2.036346 TGCAGTCGGATCGATCATGATT 59.964 45.455 25.93 16.37 38.42 2.57
1679 1800 1.615392 TGCAGTCGGATCGATCATGAT 59.385 47.619 25.93 8.25 38.42 2.45
1680 1801 1.032014 TGCAGTCGGATCGATCATGA 58.968 50.000 25.93 19.39 38.42 3.07
1681 1802 1.725164 CATGCAGTCGGATCGATCATG 59.275 52.381 25.93 17.48 38.42 3.07
1682 1803 1.342496 ACATGCAGTCGGATCGATCAT 59.658 47.619 25.93 7.64 38.42 2.45
1683 1804 0.746659 ACATGCAGTCGGATCGATCA 59.253 50.000 25.93 4.46 38.42 2.92
1684 1805 1.524355 CAACATGCAGTCGGATCGATC 59.476 52.381 17.36 17.36 38.42 3.69
1685 1806 1.136891 TCAACATGCAGTCGGATCGAT 59.863 47.619 0.00 0.00 38.42 3.59
1686 1807 0.530288 TCAACATGCAGTCGGATCGA 59.470 50.000 0.00 0.00 0.00 3.59
1687 1808 1.575244 ATCAACATGCAGTCGGATCG 58.425 50.000 0.00 0.00 0.00 3.69
1750 1875 9.190858 TGTTTTACATTACAATGACATTTGCTC 57.809 29.630 8.89 0.00 39.67 4.26
1751 1876 9.539825 TTGTTTTACATTACAATGACATTTGCT 57.460 25.926 8.89 0.00 39.67 3.91
1761 1886 9.337091 GCGTGATAGTTTGTTTTACATTACAAT 57.663 29.630 0.00 0.00 34.52 2.71
1762 1887 8.343366 TGCGTGATAGTTTGTTTTACATTACAA 58.657 29.630 0.00 0.00 32.76 2.41
1763 1888 7.862648 TGCGTGATAGTTTGTTTTACATTACA 58.137 30.769 0.00 0.00 0.00 2.41
1764 1889 8.889849 ATGCGTGATAGTTTGTTTTACATTAC 57.110 30.769 0.00 0.00 0.00 1.89
1766 1891 9.554724 CTAATGCGTGATAGTTTGTTTTACATT 57.445 29.630 0.00 0.00 0.00 2.71
1767 1892 8.726988 ACTAATGCGTGATAGTTTGTTTTACAT 58.273 29.630 0.00 0.00 0.00 2.29
1768 1893 8.090250 ACTAATGCGTGATAGTTTGTTTTACA 57.910 30.769 0.00 0.00 0.00 2.41
1769 1894 9.685005 CTACTAATGCGTGATAGTTTGTTTTAC 57.315 33.333 0.00 0.00 34.37 2.01
1770 1895 9.642327 TCTACTAATGCGTGATAGTTTGTTTTA 57.358 29.630 0.00 0.00 34.37 1.52
1772 1897 7.817962 ACTCTACTAATGCGTGATAGTTTGTTT 59.182 33.333 0.00 0.00 34.37 2.83
1775 1900 6.752351 ACACTCTACTAATGCGTGATAGTTTG 59.248 38.462 0.00 0.00 34.37 2.93
1785 1910 3.119459 ACTGGACACACTCTACTAATGCG 60.119 47.826 0.00 0.00 0.00 4.73
1799 1924 5.531287 ACAGAACAAGGAAATTACTGGACAC 59.469 40.000 0.00 0.00 0.00 3.67
1884 2028 7.109006 CCACAAAATTTGTTGCACTCTAATC 57.891 36.000 8.85 0.00 43.23 1.75
1938 2082 1.523154 TTTGGCGCCAATGTCACTCC 61.523 55.000 40.32 3.54 35.70 3.85
1953 2097 7.645058 AGGAAATGTTATACCATGACTTTGG 57.355 36.000 0.00 0.00 42.82 3.28
2063 2217 4.043561 TGTCCCCATGCTAAACCTTAAAGA 59.956 41.667 0.00 0.00 0.00 2.52
2074 2228 1.288508 ATTGGCCTGTCCCCATGCTA 61.289 55.000 3.32 0.00 33.27 3.49
2092 2248 3.524095 TCAACAATGACCCAAGGTGAT 57.476 42.857 0.00 0.00 35.25 3.06
2101 2257 8.476925 GTCGTAAATTTTTCTTCAACAATGACC 58.523 33.333 0.00 0.00 34.61 4.02
2121 2277 4.347583 TCCTTAAACTTTGGGGAGTCGTAA 59.652 41.667 0.00 0.00 0.00 3.18
2127 2285 2.820197 GTGCTCCTTAAACTTTGGGGAG 59.180 50.000 14.99 14.99 44.41 4.30
2313 2473 5.860941 TTGTTCTCTCTTCTCACTTGACT 57.139 39.130 0.00 0.00 0.00 3.41
2333 2500 5.505173 TCTTTCTTCTGGCACTTTCTTTG 57.495 39.130 0.00 0.00 0.00 2.77
2371 2538 9.225436 GGATTCTTCTTTTCTATGTCAAAGAGT 57.775 33.333 0.00 0.00 39.58 3.24
2372 2539 9.224267 TGGATTCTTCTTTTCTATGTCAAAGAG 57.776 33.333 0.00 0.00 39.58 2.85
2403 2570 9.860898 CTTTATATATAAAGCAGGGCAAAATCC 57.139 33.333 25.10 0.00 41.69 3.01
2436 2603 4.693566 TCATCACTTTGTATCGGTTTGGTC 59.306 41.667 0.00 0.00 0.00 4.02
2445 3096 5.501156 AGGGTTTCCTCATCACTTTGTATC 58.499 41.667 0.00 0.00 39.80 2.24
2462 3113 8.329502 ACTATCATTAGCTTTGTAAGAGGGTTT 58.670 33.333 0.00 0.00 0.00 3.27
2483 3134 7.046033 CCCGTACCCATGGATAAATTACTATC 58.954 42.308 15.22 0.00 31.77 2.08
2484 3135 6.502863 ACCCGTACCCATGGATAAATTACTAT 59.497 38.462 15.22 0.00 31.77 2.12
2486 3137 4.661709 ACCCGTACCCATGGATAAATTACT 59.338 41.667 15.22 0.00 31.77 2.24
2487 3138 4.976864 ACCCGTACCCATGGATAAATTAC 58.023 43.478 15.22 3.72 31.77 1.89
2488 3139 6.956102 ATACCCGTACCCATGGATAAATTA 57.044 37.500 15.22 0.00 31.77 1.40
2489 3140 5.853572 ATACCCGTACCCATGGATAAATT 57.146 39.130 15.22 0.00 31.77 1.82
2490 3141 6.634039 GCATATACCCGTACCCATGGATAAAT 60.634 42.308 15.22 0.00 31.77 1.40
2491 3142 5.338544 GCATATACCCGTACCCATGGATAAA 60.339 44.000 15.22 0.00 31.77 1.40
2492 3143 4.162698 GCATATACCCGTACCCATGGATAA 59.837 45.833 15.22 0.00 31.77 1.75
2493 3144 3.707611 GCATATACCCGTACCCATGGATA 59.292 47.826 15.22 0.00 31.77 2.59
2494 3145 2.504175 GCATATACCCGTACCCATGGAT 59.496 50.000 15.22 0.00 31.77 3.41
2495 3146 1.903860 GCATATACCCGTACCCATGGA 59.096 52.381 15.22 0.00 31.77 3.41
2496 3147 1.626321 TGCATATACCCGTACCCATGG 59.374 52.381 4.14 4.14 0.00 3.66
2497 3148 3.270027 CATGCATATACCCGTACCCATG 58.730 50.000 0.00 0.00 0.00 3.66
2498 3149 2.238646 CCATGCATATACCCGTACCCAT 59.761 50.000 0.00 0.00 0.00 4.00
2499 3150 1.626321 CCATGCATATACCCGTACCCA 59.374 52.381 0.00 0.00 0.00 4.51
2500 3151 1.065709 CCCATGCATATACCCGTACCC 60.066 57.143 0.00 0.00 0.00 3.69
2501 3152 1.626825 ACCCATGCATATACCCGTACC 59.373 52.381 0.00 0.00 0.00 3.34
2502 3153 3.071479 CAACCCATGCATATACCCGTAC 58.929 50.000 0.00 0.00 0.00 3.67
2503 3154 2.039216 CCAACCCATGCATATACCCGTA 59.961 50.000 0.00 0.00 0.00 4.02
2504 3155 1.202879 CCAACCCATGCATATACCCGT 60.203 52.381 0.00 0.00 0.00 5.28
2505 3156 1.533625 CCAACCCATGCATATACCCG 58.466 55.000 0.00 0.00 0.00 5.28
2506 3157 1.146982 ACCCAACCCATGCATATACCC 59.853 52.381 0.00 0.00 0.00 3.69
2507 3158 2.238521 CACCCAACCCATGCATATACC 58.761 52.381 0.00 0.00 0.00 2.73
2508 3159 2.622942 CACACCCAACCCATGCATATAC 59.377 50.000 0.00 0.00 0.00 1.47
2509 3160 2.424091 CCACACCCAACCCATGCATATA 60.424 50.000 0.00 0.00 0.00 0.86
2510 3161 1.688942 CCACACCCAACCCATGCATAT 60.689 52.381 0.00 0.00 0.00 1.78
2511 3162 0.324183 CCACACCCAACCCATGCATA 60.324 55.000 0.00 0.00 0.00 3.14
2512 3163 1.610086 CCACACCCAACCCATGCAT 60.610 57.895 0.00 0.00 0.00 3.96
2513 3164 2.203611 CCACACCCAACCCATGCA 60.204 61.111 0.00 0.00 0.00 3.96
2514 3165 3.694538 GCCACACCCAACCCATGC 61.695 66.667 0.00 0.00 0.00 4.06
2515 3166 2.996734 GGCCACACCCAACCCATG 60.997 66.667 0.00 0.00 0.00 3.66
2516 3167 2.867508 ATGGCCACACCCAACCCAT 61.868 57.895 8.16 0.00 38.61 4.00
2517 3168 3.516512 ATGGCCACACCCAACCCA 61.517 61.111 8.16 0.00 38.61 4.51
2518 3169 2.803593 ATCATGGCCACACCCAACCC 62.804 60.000 8.16 0.00 38.61 4.11
2519 3170 0.904394 AATCATGGCCACACCCAACC 60.904 55.000 8.16 0.00 38.61 3.77
2520 3171 0.975887 AAATCATGGCCACACCCAAC 59.024 50.000 8.16 0.00 38.61 3.77
2521 3172 1.727062 AAAATCATGGCCACACCCAA 58.273 45.000 8.16 0.00 38.61 4.12
2522 3173 2.612285 TAAAATCATGGCCACACCCA 57.388 45.000 8.16 0.00 39.65 4.51
2523 3174 3.320826 GGTATAAAATCATGGCCACACCC 59.679 47.826 8.16 0.00 37.83 4.61
2524 3175 3.320826 GGGTATAAAATCATGGCCACACC 59.679 47.826 8.16 4.22 39.84 4.16
2525 3176 3.957497 TGGGTATAAAATCATGGCCACAC 59.043 43.478 8.16 0.00 0.00 3.82
2526 3177 4.256983 TGGGTATAAAATCATGGCCACA 57.743 40.909 8.16 0.00 0.00 4.17
2527 3178 4.021192 CCATGGGTATAAAATCATGGCCAC 60.021 45.833 8.16 0.00 46.50 5.01
2554 3205 4.510340 CCCATAACTTAACGTGCAGGATAC 59.490 45.833 14.38 0.00 0.00 2.24
2555 3206 4.162698 ACCCATAACTTAACGTGCAGGATA 59.837 41.667 14.38 2.37 0.00 2.59
2556 3207 3.054655 ACCCATAACTTAACGTGCAGGAT 60.055 43.478 14.38 3.54 0.00 3.24
2557 3208 2.303600 ACCCATAACTTAACGTGCAGGA 59.696 45.455 14.38 0.00 0.00 3.86
2559 3210 4.751060 TCTACCCATAACTTAACGTGCAG 58.249 43.478 0.00 0.00 0.00 4.41
2561 3212 3.554731 GCTCTACCCATAACTTAACGTGC 59.445 47.826 0.00 0.00 0.00 5.34
2562 3213 4.751060 TGCTCTACCCATAACTTAACGTG 58.249 43.478 0.00 0.00 0.00 4.49
2563 3214 5.128171 TCATGCTCTACCCATAACTTAACGT 59.872 40.000 0.00 0.00 0.00 3.99
2564 3215 5.597806 TCATGCTCTACCCATAACTTAACG 58.402 41.667 0.00 0.00 0.00 3.18
2565 3216 6.583562 ACTCATGCTCTACCCATAACTTAAC 58.416 40.000 0.00 0.00 0.00 2.01
2566 3217 6.808321 ACTCATGCTCTACCCATAACTTAA 57.192 37.500 0.00 0.00 0.00 1.85
2568 3219 7.310113 GCTATACTCATGCTCTACCCATAACTT 60.310 40.741 0.00 0.00 0.00 2.66
2569 3220 6.153680 GCTATACTCATGCTCTACCCATAACT 59.846 42.308 0.00 0.00 0.00 2.24
2570 3221 6.334202 GCTATACTCATGCTCTACCCATAAC 58.666 44.000 0.00 0.00 0.00 1.89
2571 3222 5.422331 GGCTATACTCATGCTCTACCCATAA 59.578 44.000 0.00 0.00 0.00 1.90
2573 3224 3.772025 GGCTATACTCATGCTCTACCCAT 59.228 47.826 0.00 0.00 0.00 4.00
2574 3225 3.165875 GGCTATACTCATGCTCTACCCA 58.834 50.000 0.00 0.00 0.00 4.51
2575 3226 3.436243 AGGCTATACTCATGCTCTACCC 58.564 50.000 0.00 0.00 0.00 3.69
2576 3227 4.282195 ACAAGGCTATACTCATGCTCTACC 59.718 45.833 0.00 0.00 0.00 3.18
2577 3228 5.461032 ACAAGGCTATACTCATGCTCTAC 57.539 43.478 0.00 0.00 0.00 2.59
2578 3229 5.477291 GGTACAAGGCTATACTCATGCTCTA 59.523 44.000 8.32 0.00 0.00 2.43
2579 3230 4.282195 GGTACAAGGCTATACTCATGCTCT 59.718 45.833 8.32 0.00 0.00 4.09
2581 3232 3.325135 GGGTACAAGGCTATACTCATGCT 59.675 47.826 8.32 0.00 0.00 3.79
2583 3234 3.321111 ACGGGTACAAGGCTATACTCATG 59.679 47.826 8.87 0.00 0.00 3.07
2586 3237 2.035576 CCACGGGTACAAGGCTATACTC 59.964 54.545 8.32 4.25 0.00 2.59
2587 3238 2.037144 CCACGGGTACAAGGCTATACT 58.963 52.381 8.32 0.00 0.00 2.12
2588 3239 2.034124 TCCACGGGTACAAGGCTATAC 58.966 52.381 0.00 0.00 0.00 1.47
2590 3241 1.802553 ATCCACGGGTACAAGGCTAT 58.197 50.000 0.00 0.00 0.00 2.97
2591 3242 2.457813 TATCCACGGGTACAAGGCTA 57.542 50.000 0.00 0.00 0.00 3.93
2592 3243 1.802553 ATATCCACGGGTACAAGGCT 58.197 50.000 0.00 0.00 0.00 4.58
2594 3245 2.301009 GGGTATATCCACGGGTACAAGG 59.699 54.545 0.00 0.00 38.11 3.61
2595 3246 2.967201 TGGGTATATCCACGGGTACAAG 59.033 50.000 0.00 0.00 38.11 3.16
2596 3247 3.043465 TGGGTATATCCACGGGTACAA 57.957 47.619 0.00 0.00 38.11 2.41
2597 3248 2.771562 TGGGTATATCCACGGGTACA 57.228 50.000 0.00 0.00 38.11 2.90
2598 3249 3.448660 GGTATGGGTATATCCACGGGTAC 59.551 52.174 6.94 5.94 39.97 3.34
2600 3251 2.543635 GGTATGGGTATATCCACGGGT 58.456 52.381 6.94 0.00 39.97 5.28
2601 3252 1.835531 GGGTATGGGTATATCCACGGG 59.164 57.143 6.94 0.00 39.47 5.28
2602 3253 2.829023 AGGGTATGGGTATATCCACGG 58.171 52.381 6.94 0.00 41.72 4.94
2603 3254 3.703052 GGTAGGGTATGGGTATATCCACG 59.297 52.174 6.94 0.00 41.72 4.94
2605 3256 3.310067 CGGGTAGGGTATGGGTATATCCA 60.310 52.174 7.31 7.31 41.72 3.41
2606 3257 3.303049 CGGGTAGGGTATGGGTATATCC 58.697 54.545 0.00 0.00 39.90 2.59
2607 3258 3.986435 ACGGGTAGGGTATGGGTATATC 58.014 50.000 0.00 0.00 0.00 1.63
2608 3259 4.424761 AACGGGTAGGGTATGGGTATAT 57.575 45.455 0.00 0.00 0.00 0.86
2618 3689 6.014840 CACATATCACTATAAACGGGTAGGGT 60.015 42.308 0.00 0.00 0.00 4.34
2621 3692 7.088905 GTCCACATATCACTATAAACGGGTAG 58.911 42.308 0.00 0.00 0.00 3.18
2627 3698 7.876582 GGGTAAGGTCCACATATCACTATAAAC 59.123 40.741 0.00 0.00 0.00 2.01
2629 3700 6.209986 CGGGTAAGGTCCACATATCACTATAA 59.790 42.308 0.00 0.00 0.00 0.98
2633 3704 2.698797 CGGGTAAGGTCCACATATCACT 59.301 50.000 0.00 0.00 0.00 3.41
2634 3705 2.433239 ACGGGTAAGGTCCACATATCAC 59.567 50.000 0.00 0.00 0.00 3.06
2637 3708 1.766496 CCACGGGTAAGGTCCACATAT 59.234 52.381 0.00 0.00 0.00 1.78
2638 3709 1.196911 CCACGGGTAAGGTCCACATA 58.803 55.000 0.00 0.00 0.00 2.29
2639 3710 0.545787 TCCACGGGTAAGGTCCACAT 60.546 55.000 0.00 0.00 0.00 3.21
2640 3711 0.763604 TTCCACGGGTAAGGTCCACA 60.764 55.000 0.00 0.00 0.00 4.17
2641 3712 0.321034 GTTCCACGGGTAAGGTCCAC 60.321 60.000 0.00 0.00 0.00 4.02
2642 3713 0.472352 AGTTCCACGGGTAAGGTCCA 60.472 55.000 0.00 0.00 0.00 4.02
2643 3714 0.248565 GAGTTCCACGGGTAAGGTCC 59.751 60.000 0.00 0.00 0.00 4.46
2645 3716 0.472352 TGGAGTTCCACGGGTAAGGT 60.472 55.000 0.00 0.00 42.01 3.50
2646 3717 2.368591 TGGAGTTCCACGGGTAAGG 58.631 57.895 0.00 0.00 42.01 2.69
2655 3726 1.339535 TGCGCATATGTTGGAGTTCCA 60.340 47.619 5.66 0.00 45.94 3.53
2656 3727 1.378531 TGCGCATATGTTGGAGTTCC 58.621 50.000 5.66 0.00 0.00 3.62
2657 3728 2.223340 CCTTGCGCATATGTTGGAGTTC 60.223 50.000 12.75 0.00 0.00 3.01
2658 3729 1.745087 CCTTGCGCATATGTTGGAGTT 59.255 47.619 12.75 0.00 0.00 3.01
2660 3731 0.664761 CCCTTGCGCATATGTTGGAG 59.335 55.000 12.75 2.00 0.00 3.86
2661 3732 0.034574 ACCCTTGCGCATATGTTGGA 60.035 50.000 12.75 0.00 0.00 3.53
2662 3733 0.381801 GACCCTTGCGCATATGTTGG 59.618 55.000 12.75 8.36 0.00 3.77
2663 3734 0.027979 CGACCCTTGCGCATATGTTG 59.972 55.000 12.75 8.73 0.00 3.33
2664 3735 1.095228 CCGACCCTTGCGCATATGTT 61.095 55.000 12.75 0.00 0.00 2.71
2668 3739 1.440060 CTACCGACCCTTGCGCATA 59.560 57.895 12.75 0.83 0.00 3.14
2670 3741 4.752879 GCTACCGACCCTTGCGCA 62.753 66.667 5.66 5.66 0.00 6.09
2673 3744 2.508663 GACGCTACCGACCCTTGC 60.509 66.667 0.00 0.00 38.29 4.01
2675 3746 0.037605 CTTTGACGCTACCGACCCTT 60.038 55.000 0.00 0.00 38.29 3.95
2676 3747 0.896940 TCTTTGACGCTACCGACCCT 60.897 55.000 0.00 0.00 38.29 4.34
2677 3748 0.037975 TTCTTTGACGCTACCGACCC 60.038 55.000 0.00 0.00 38.29 4.46
2678 3749 1.347320 CTTCTTTGACGCTACCGACC 58.653 55.000 0.00 0.00 38.29 4.79
2679 3750 0.714439 GCTTCTTTGACGCTACCGAC 59.286 55.000 0.00 0.00 38.29 4.79
2680 3751 0.601558 AGCTTCTTTGACGCTACCGA 59.398 50.000 0.00 0.00 35.42 4.69
2681 3752 0.716108 CAGCTTCTTTGACGCTACCG 59.284 55.000 0.00 0.00 34.97 4.02
2682 3753 1.079503 CCAGCTTCTTTGACGCTACC 58.920 55.000 0.00 0.00 34.97 3.18
2683 3754 1.079503 CCCAGCTTCTTTGACGCTAC 58.920 55.000 0.00 0.00 34.97 3.58
2685 3756 1.968540 GCCCAGCTTCTTTGACGCT 60.969 57.895 0.00 0.00 37.65 5.07
2686 3757 2.563427 GCCCAGCTTCTTTGACGC 59.437 61.111 0.00 0.00 0.00 5.19
2687 3758 1.667830 TCGCCCAGCTTCTTTGACG 60.668 57.895 0.00 0.00 0.00 4.35
2688 3759 1.578206 GGTCGCCCAGCTTCTTTGAC 61.578 60.000 0.00 0.00 0.00 3.18
2689 3760 1.302511 GGTCGCCCAGCTTCTTTGA 60.303 57.895 0.00 0.00 0.00 2.69
2690 3761 2.335712 GGGTCGCCCAGCTTCTTTG 61.336 63.158 9.72 0.00 44.65 2.77
2700 3771 3.557290 GGGATAGTGGGGTCGCCC 61.557 72.222 3.03 6.38 44.51 6.13
2701 3772 3.557290 GGGGATAGTGGGGTCGCC 61.557 72.222 0.00 0.00 39.76 5.54
2702 3773 0.834687 TATGGGGATAGTGGGGTCGC 60.835 60.000 0.00 0.00 0.00 5.19
2705 3776 4.044191 GCTTAATTATGGGGATAGTGGGGT 59.956 45.833 1.00 0.00 0.00 4.95
2706 3777 4.292306 AGCTTAATTATGGGGATAGTGGGG 59.708 45.833 1.00 0.00 0.00 4.96
2707 3778 5.520748 AGCTTAATTATGGGGATAGTGGG 57.479 43.478 1.00 0.00 0.00 4.61
2708 3779 6.431234 GTCAAGCTTAATTATGGGGATAGTGG 59.569 42.308 0.00 0.00 0.00 4.00
2709 3780 6.998074 TGTCAAGCTTAATTATGGGGATAGTG 59.002 38.462 0.00 0.00 0.00 2.74
2710 3781 6.998673 GTGTCAAGCTTAATTATGGGGATAGT 59.001 38.462 0.00 0.00 0.00 2.12
2711 3782 6.431234 GGTGTCAAGCTTAATTATGGGGATAG 59.569 42.308 0.00 0.00 0.00 2.08
2714 3785 4.017958 TGGTGTCAAGCTTAATTATGGGGA 60.018 41.667 0.00 0.00 0.00 4.81
2717 3788 6.092748 GTGTTGGTGTCAAGCTTAATTATGG 58.907 40.000 0.00 0.00 32.92 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.