Multiple sequence alignment - TraesCS5B01G403400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G403400 chr5B 100.000 5660 0 0 1 5660 580099558 580105217 0.000000e+00 10453.0
1 TraesCS5B01G403400 chr5B 88.025 643 66 8 1 642 595075727 595075095 0.000000e+00 750.0
2 TraesCS5B01G403400 chr5B 87.579 636 77 2 4 637 466738731 466739366 0.000000e+00 736.0
3 TraesCS5B01G403400 chr5D 92.286 1076 64 8 4600 5657 472738440 472739514 0.000000e+00 1509.0
4 TraesCS5B01G403400 chr5D 91.853 896 51 11 957 1842 472734523 472735406 0.000000e+00 1230.0
5 TraesCS5B01G403400 chr5D 89.121 956 61 20 2126 3070 472735576 472736499 0.000000e+00 1149.0
6 TraesCS5B01G403400 chr5D 87.087 635 73 7 1 634 344691168 344691794 0.000000e+00 710.0
7 TraesCS5B01G403400 chr5D 86.940 536 52 9 3458 3985 472736842 472737367 2.270000e-163 586.0
8 TraesCS5B01G403400 chr5D 89.655 319 21 9 3067 3376 472736528 472736843 4.110000e-106 396.0
9 TraesCS5B01G403400 chr5D 94.815 135 7 0 1081 1215 472733404 472733538 1.600000e-50 211.0
10 TraesCS5B01G403400 chr5D 96.970 66 2 0 4309 4374 472737673 472737738 1.670000e-20 111.0
11 TraesCS5B01G403400 chr5D 97.674 43 1 0 1864 1906 456063615 456063657 2.190000e-09 75.0
12 TraesCS5B01G403400 chr5D 97.674 43 1 0 1862 1904 456063699 456063657 2.190000e-09 75.0
13 TraesCS5B01G403400 chr5D 97.674 43 1 0 770 812 472734376 472734418 2.190000e-09 75.0
14 TraesCS5B01G403400 chr5A 92.850 1007 56 9 1989 2987 592290624 592291622 0.000000e+00 1447.0
15 TraesCS5B01G403400 chr5A 91.205 1046 59 15 4642 5660 592293989 592295028 0.000000e+00 1391.0
16 TraesCS5B01G403400 chr5A 91.577 926 53 12 954 1865 592289652 592290566 0.000000e+00 1254.0
17 TraesCS5B01G403400 chr5A 87.080 565 54 10 3458 4013 592292126 592292680 6.230000e-174 621.0
18 TraesCS5B01G403400 chr5A 93.534 232 15 0 3065 3296 592291708 592291939 4.200000e-91 346.0
19 TraesCS5B01G403400 chr5A 97.297 111 2 1 661 770 531614574 531614684 2.690000e-43 187.0
20 TraesCS5B01G403400 chr5A 83.673 147 4 6 775 917 592289518 592289648 2.770000e-23 121.0
21 TraesCS5B01G403400 chr5A 98.387 62 1 0 4313 4374 592292971 592293032 6.000000e-20 110.0
22 TraesCS5B01G403400 chr4B 89.780 636 59 5 1 636 517367205 517367834 0.000000e+00 809.0
23 TraesCS5B01G403400 chr4B 94.505 91 5 0 3375 3465 500840052 500839962 2.130000e-29 141.0
24 TraesCS5B01G403400 chr4B 100.000 44 0 0 1863 1906 47623478 47623435 1.310000e-11 82.4
25 TraesCS5B01G403400 chr4A 88.486 634 71 1 1 634 666800762 666800131 0.000000e+00 765.0
26 TraesCS5B01G403400 chr4A 98.095 105 2 0 666 770 691126907 691127011 3.480000e-42 183.0
27 TraesCS5B01G403400 chr4A 97.917 48 0 1 1863 1910 569867887 569867933 1.310000e-11 82.4
28 TraesCS5B01G403400 chr1B 88.504 635 67 4 1 634 562438313 562437684 0.000000e+00 763.0
29 TraesCS5B01G403400 chr1B 88.069 637 69 3 1 637 48907724 48907095 0.000000e+00 749.0
30 TraesCS5B01G403400 chr1B 97.222 108 2 1 666 773 583853426 583853532 1.250000e-41 182.0
31 TraesCS5B01G403400 chr2B 88.346 635 67 5 1 634 424514685 424515313 0.000000e+00 756.0
32 TraesCS5B01G403400 chr2B 96.396 111 2 2 666 775 554453601 554453492 1.250000e-41 182.0
33 TraesCS5B01G403400 chr2B 97.727 44 1 0 1863 1906 775170286 775170243 6.080000e-10 76.8
34 TraesCS5B01G403400 chr7B 86.813 637 77 5 1 636 71247229 71247859 0.000000e+00 704.0
35 TraesCS5B01G403400 chr7B 80.697 373 47 9 5264 5635 530375753 530375405 3.360000e-67 267.0
36 TraesCS5B01G403400 chr7D 81.407 398 48 10 5264 5660 501091379 501091007 9.220000e-78 302.0
37 TraesCS5B01G403400 chr7D 94.624 93 5 0 3367 3459 622185156 622185064 1.640000e-30 145.0
38 TraesCS5B01G403400 chr7A 81.407 398 49 11 5264 5660 567579371 567578998 9.220000e-78 302.0
39 TraesCS5B01G403400 chr7A 95.536 112 4 1 662 772 115834659 115834548 1.620000e-40 178.0
40 TraesCS5B01G403400 chr7A 97.701 87 2 0 3375 3461 639594950 639595036 3.530000e-32 150.0
41 TraesCS5B01G403400 chr6A 97.222 108 3 0 665 772 51989893 51989786 3.480000e-42 183.0
42 TraesCS5B01G403400 chr3A 97.222 108 3 0 662 769 13241596 13241703 3.480000e-42 183.0
43 TraesCS5B01G403400 chr1A 98.095 105 2 0 666 770 585628430 585628326 3.480000e-42 183.0
44 TraesCS5B01G403400 chr1A 96.396 111 3 1 659 769 366367187 366367296 1.250000e-41 182.0
45 TraesCS5B01G403400 chr2A 95.789 95 3 1 3375 3468 71560750 71560844 9.820000e-33 152.0
46 TraesCS5B01G403400 chr2A 94.737 95 4 1 3375 3468 71546585 71546679 4.570000e-31 147.0
47 TraesCS5B01G403400 chr6D 95.604 91 4 0 3375 3465 306876340 306876250 4.570000e-31 147.0
48 TraesCS5B01G403400 chr6D 85.915 71 8 1 1864 1932 363033206 363033136 2.190000e-09 75.0
49 TraesCS5B01G403400 chrUn 96.512 86 3 0 3374 3459 37006448 37006363 5.910000e-30 143.0
50 TraesCS5B01G403400 chrUn 96.512 86 3 0 3374 3459 38258669 38258584 5.910000e-30 143.0
51 TraesCS5B01G403400 chrUn 93.684 95 6 0 3365 3459 196709552 196709646 5.910000e-30 143.0
52 TraesCS5B01G403400 chr6B 86.301 73 8 1 1862 1932 545202878 545202806 1.690000e-10 78.7
53 TraesCS5B01G403400 chr1D 97.778 45 1 0 1862 1906 422838290 422838334 1.690000e-10 78.7
54 TraesCS5B01G403400 chr4D 84.722 72 6 2 1863 1931 438145625 438145694 3.660000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G403400 chr5B 580099558 580105217 5659 False 10453.000000 10453 100.000000 1 5660 1 chr5B.!!$F2 5659
1 TraesCS5B01G403400 chr5B 595075095 595075727 632 True 750.000000 750 88.025000 1 642 1 chr5B.!!$R1 641
2 TraesCS5B01G403400 chr5B 466738731 466739366 635 False 736.000000 736 87.579000 4 637 1 chr5B.!!$F1 633
3 TraesCS5B01G403400 chr5D 344691168 344691794 626 False 710.000000 710 87.087000 1 634 1 chr5D.!!$F1 633
4 TraesCS5B01G403400 chr5D 472733404 472739514 6110 False 658.375000 1509 92.414250 770 5657 8 chr5D.!!$F3 4887
5 TraesCS5B01G403400 chr5A 592289518 592295028 5510 False 755.714286 1447 91.186571 775 5660 7 chr5A.!!$F2 4885
6 TraesCS5B01G403400 chr4B 517367205 517367834 629 False 809.000000 809 89.780000 1 636 1 chr4B.!!$F1 635
7 TraesCS5B01G403400 chr4A 666800131 666800762 631 True 765.000000 765 88.486000 1 634 1 chr4A.!!$R1 633
8 TraesCS5B01G403400 chr1B 562437684 562438313 629 True 763.000000 763 88.504000 1 634 1 chr1B.!!$R2 633
9 TraesCS5B01G403400 chr1B 48907095 48907724 629 True 749.000000 749 88.069000 1 637 1 chr1B.!!$R1 636
10 TraesCS5B01G403400 chr2B 424514685 424515313 628 False 756.000000 756 88.346000 1 634 1 chr2B.!!$F1 633
11 TraesCS5B01G403400 chr7B 71247229 71247859 630 False 704.000000 704 86.813000 1 636 1 chr7B.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1171 0.040781 CGCGTCCACGGAACAAAAAT 60.041 50.000 0.00 0.0 40.23 1.82 F
1608 1849 0.382515 GCCAAGGTAACGTTGCACAA 59.617 50.000 18.24 0.0 46.39 3.33 F
3135 3432 1.064832 GCCAGAGAAATCTTGAGGGCT 60.065 52.381 0.00 0.0 37.22 5.19 F
4030 4457 0.400213 GTCTGTGGACAATGGGGTGA 59.600 55.000 0.00 0.0 41.75 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2361 0.038599 TGGCAGTCCATCAATGCACT 59.961 50.000 0.0 0.0 41.78 4.40 R
3369 3780 2.168496 TGGGACGGAGAGAGTAACAAG 58.832 52.381 0.0 0.0 0.00 3.16 R
4064 4491 0.320421 TACAGCAGACCAGGTTTCGC 60.320 55.000 0.0 0.0 0.00 4.70 R
4887 6098 1.068541 GTTCGGTTCAAGGGTTGATGC 60.069 52.381 0.0 0.0 39.84 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 1.535444 TTCCTCTTGGCCGACTCCA 60.535 57.895 0.00 0.00 0.00 3.86
180 181 2.525629 TCTTGGCCGACTCCACCA 60.526 61.111 0.00 0.00 35.50 4.17
287 289 1.810030 GGTCTTCATGCCGGACGAC 60.810 63.158 5.05 0.00 35.86 4.34
396 398 5.511373 GGGTTTTGAGAAAAATGAGGGGAAG 60.511 44.000 0.00 0.00 31.13 3.46
417 419 4.560743 TGCTTGCTGCCACCGACA 62.561 61.111 0.00 0.00 42.00 4.35
534 545 1.504359 CCGTGAACTAAAAGCGGACA 58.496 50.000 0.00 0.00 44.57 4.02
595 606 1.877367 GCGCCGACCCAAACAAATA 59.123 52.632 0.00 0.00 0.00 1.40
637 648 2.618045 CCCCGTTGGAGTTGCTCTAAAT 60.618 50.000 0.00 0.00 33.06 1.40
638 649 2.420022 CCCGTTGGAGTTGCTCTAAATG 59.580 50.000 0.00 0.00 33.06 2.32
640 651 3.502211 CCGTTGGAGTTGCTCTAAATGTT 59.498 43.478 0.00 0.00 33.06 2.71
641 652 4.378459 CCGTTGGAGTTGCTCTAAATGTTC 60.378 45.833 0.00 0.00 33.06 3.18
643 654 5.277779 CGTTGGAGTTGCTCTAAATGTTCAA 60.278 40.000 0.00 0.00 33.06 2.69
644 655 6.503524 GTTGGAGTTGCTCTAAATGTTCAAA 58.496 36.000 0.00 0.00 33.06 2.69
647 658 8.402798 TGGAGTTGCTCTAAATGTTCAAAATA 57.597 30.769 0.00 0.00 0.00 1.40
648 659 8.296713 TGGAGTTGCTCTAAATGTTCAAAATAC 58.703 33.333 0.00 0.00 0.00 1.89
649 660 8.296713 GGAGTTGCTCTAAATGTTCAAAATACA 58.703 33.333 0.00 0.00 0.00 2.29
655 666 8.977505 GCTCTAAATGTTCAAAATACAAAAGCA 58.022 29.630 0.00 0.00 0.00 3.91
657 668 8.977505 TCTAAATGTTCAAAATACAAAAGCAGC 58.022 29.630 0.00 0.00 0.00 5.25
658 669 7.551035 AAATGTTCAAAATACAAAAGCAGCA 57.449 28.000 0.00 0.00 0.00 4.41
659 670 7.733402 AATGTTCAAAATACAAAAGCAGCAT 57.267 28.000 0.00 0.00 0.00 3.79
660 671 7.733402 ATGTTCAAAATACAAAAGCAGCATT 57.267 28.000 0.00 0.00 0.00 3.56
661 672 7.176285 TGTTCAAAATACAAAAGCAGCATTC 57.824 32.000 0.00 0.00 0.00 2.67
662 673 6.202570 TGTTCAAAATACAAAAGCAGCATTCC 59.797 34.615 0.00 0.00 0.00 3.01
663 674 4.922692 TCAAAATACAAAAGCAGCATTCCG 59.077 37.500 0.00 0.00 0.00 4.30
664 675 2.566952 ATACAAAAGCAGCATTCCGC 57.433 45.000 0.00 0.00 42.91 5.54
682 693 2.527875 GGAGCCGGATCCCCTGAT 60.528 66.667 28.96 0.00 32.79 2.90
683 694 2.746359 GAGCCGGATCCCCTGATG 59.254 66.667 9.02 0.00 0.00 3.07
684 695 2.040464 AGCCGGATCCCCTGATGT 60.040 61.111 5.05 0.00 0.00 3.06
686 697 1.122019 AGCCGGATCCCCTGATGTAC 61.122 60.000 5.05 0.00 0.00 2.90
687 698 1.666011 CCGGATCCCCTGATGTACG 59.334 63.158 6.06 0.00 0.00 3.67
689 700 1.816863 CGGATCCCCTGATGTACGGG 61.817 65.000 6.06 0.00 44.27 5.28
692 703 1.696097 ATCCCCTGATGTACGGGCAC 61.696 60.000 0.00 0.00 43.37 5.01
706 717 4.947147 GCACCTGACGTTGGGCCA 62.947 66.667 0.00 0.00 0.00 5.36
707 718 2.978010 CACCTGACGTTGGGCCAC 60.978 66.667 5.23 0.00 0.00 5.01
708 719 3.168528 ACCTGACGTTGGGCCACT 61.169 61.111 5.23 0.00 0.00 4.00
711 722 1.961277 CTGACGTTGGGCCACTGAC 60.961 63.158 5.23 0.00 0.00 3.51
712 723 3.041940 GACGTTGGGCCACTGACG 61.042 66.667 23.66 23.66 41.00 4.35
735 746 3.608662 GTCCGGGTCCACACGTCA 61.609 66.667 0.00 0.00 42.08 4.35
736 747 3.299977 TCCGGGTCCACACGTCAG 61.300 66.667 0.00 0.00 42.08 3.51
740 751 2.430921 GGTCCACACGTCAGCGAG 60.431 66.667 0.00 0.00 42.00 5.03
741 752 2.335369 GTCCACACGTCAGCGAGT 59.665 61.111 0.00 0.00 42.28 4.18
754 765 4.746951 CGAGTGCGCCGTACGTCA 62.747 66.667 15.21 6.28 46.11 4.35
756 767 3.318539 GAGTGCGCCGTACGTCAGA 62.319 63.158 15.21 0.00 46.11 3.27
757 768 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
759 770 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
761 772 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
762 773 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
763 774 1.429825 CCGTACGTCAGAGGAGCTG 59.570 63.158 15.21 0.00 46.31 4.24
764 775 1.226435 CGTACGTCAGAGGAGCTGC 60.226 63.158 7.22 0.00 44.52 5.25
766 777 2.986413 ACGTCAGAGGAGCTGCGT 60.986 61.111 0.00 0.00 45.57 5.24
767 778 1.645704 TACGTCAGAGGAGCTGCGTC 61.646 60.000 14.59 0.00 46.59 5.19
768 779 2.183046 GTCAGAGGAGCTGCGTCC 59.817 66.667 0.00 9.30 44.52 4.79
769 780 3.443925 TCAGAGGAGCTGCGTCCG 61.444 66.667 0.00 0.00 44.52 4.79
867 1092 4.851179 GGTCATTCCCCGACGGCC 62.851 72.222 8.86 0.00 34.04 6.13
868 1093 4.851179 GTCATTCCCCGACGGCCC 62.851 72.222 8.86 0.00 0.00 5.80
917 1147 4.227134 CCAGCACGATCCCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
918 1148 4.227134 CAGCACGATCCCCTCCGG 62.227 72.222 0.00 0.00 0.00 5.14
937 1167 4.893601 TGCGCGTCCACGGAACAA 62.894 61.111 8.43 0.00 40.23 2.83
938 1168 3.641986 GCGCGTCCACGGAACAAA 61.642 61.111 8.43 0.00 40.23 2.83
939 1169 3.015677 CGCGTCCACGGAACAAAA 58.984 55.556 0.00 0.00 40.23 2.44
940 1170 1.352404 CGCGTCCACGGAACAAAAA 59.648 52.632 0.00 0.00 40.23 1.94
941 1171 0.040781 CGCGTCCACGGAACAAAAAT 60.041 50.000 0.00 0.00 40.23 1.82
942 1172 1.681825 GCGTCCACGGAACAAAAATC 58.318 50.000 0.55 0.00 40.23 2.17
943 1173 1.664874 GCGTCCACGGAACAAAAATCC 60.665 52.381 0.55 0.00 40.23 3.01
944 1174 1.604755 CGTCCACGGAACAAAAATCCA 59.395 47.619 0.00 0.00 36.74 3.41
945 1175 2.350388 CGTCCACGGAACAAAAATCCAG 60.350 50.000 0.00 0.00 36.74 3.86
946 1176 2.030274 GTCCACGGAACAAAAATCCAGG 60.030 50.000 0.00 0.00 36.74 4.45
947 1177 1.272212 CCACGGAACAAAAATCCAGGG 59.728 52.381 0.00 0.00 36.74 4.45
948 1178 2.235016 CACGGAACAAAAATCCAGGGA 58.765 47.619 0.00 0.00 36.74 4.20
949 1179 2.228822 CACGGAACAAAAATCCAGGGAG 59.771 50.000 0.00 0.00 36.74 4.30
950 1180 2.107552 ACGGAACAAAAATCCAGGGAGA 59.892 45.455 0.00 0.00 36.74 3.71
951 1181 3.153919 CGGAACAAAAATCCAGGGAGAA 58.846 45.455 0.00 0.00 36.74 2.87
952 1182 3.572255 CGGAACAAAAATCCAGGGAGAAA 59.428 43.478 0.00 0.00 36.74 2.52
1012 1246 0.463833 CAGCCGCCCTAAAACCCTAG 60.464 60.000 0.00 0.00 0.00 3.02
1014 1248 1.153025 CCGCCCTAAAACCCTAGGC 60.153 63.158 2.05 0.00 37.69 3.93
1016 1250 1.153025 GCCCTAAAACCCTAGGCCG 60.153 63.158 2.05 0.00 37.69 6.13
1528 1769 1.069258 CGGGAAAGGGGCTATCGTC 59.931 63.158 0.00 0.00 0.00 4.20
1543 1784 3.670377 GTCGCCAACCCCAACTGC 61.670 66.667 0.00 0.00 0.00 4.40
1546 1787 2.116125 GCCAACCCCAACTGCTCT 59.884 61.111 0.00 0.00 0.00 4.09
1598 1839 1.743623 CATCGCCACGCCAAGGTAA 60.744 57.895 0.00 0.00 0.00 2.85
1600 1841 3.784412 CGCCACGCCAAGGTAACG 61.784 66.667 0.00 0.00 46.39 3.18
1608 1849 0.382515 GCCAAGGTAACGTTGCACAA 59.617 50.000 18.24 0.00 46.39 3.33
1635 1876 2.230660 CCTTTCGTTCCCTGCTTTCTT 58.769 47.619 0.00 0.00 0.00 2.52
1636 1877 2.226674 CCTTTCGTTCCCTGCTTTCTTC 59.773 50.000 0.00 0.00 0.00 2.87
1637 1878 2.930826 TTCGTTCCCTGCTTTCTTCT 57.069 45.000 0.00 0.00 0.00 2.85
1638 1879 2.169832 TCGTTCCCTGCTTTCTTCTG 57.830 50.000 0.00 0.00 0.00 3.02
1644 1885 4.908601 TCCCTGCTTTCTTCTGACATTA 57.091 40.909 0.00 0.00 0.00 1.90
1655 1896 9.226345 CTTTCTTCTGACATTAACACTTGAAAC 57.774 33.333 0.00 0.00 0.00 2.78
1656 1897 8.506168 TTCTTCTGACATTAACACTTGAAACT 57.494 30.769 0.00 0.00 0.00 2.66
1657 1898 9.607988 TTCTTCTGACATTAACACTTGAAACTA 57.392 29.630 0.00 0.00 0.00 2.24
1658 1899 9.042008 TCTTCTGACATTAACACTTGAAACTAC 57.958 33.333 0.00 0.00 0.00 2.73
1691 1932 9.732130 TTAAAATAGTTTGGAAAATGGGGAATG 57.268 29.630 0.00 0.00 0.00 2.67
1696 1937 1.272425 TGGAAAATGGGGAATGCTCGT 60.272 47.619 0.00 0.00 0.00 4.18
1711 1952 2.223144 TGCTCGTGACCAAAGAAAATCG 59.777 45.455 0.00 0.00 0.00 3.34
1715 1956 3.059188 TCGTGACCAAAGAAAATCGAAGC 60.059 43.478 0.00 0.00 0.00 3.86
1725 1966 7.062255 CCAAAGAAAATCGAAGCCTGTAAATTC 59.938 37.037 0.00 0.00 0.00 2.17
1776 2017 6.748333 TCTTTGGAATTAGACATGCTTCTG 57.252 37.500 0.00 0.00 0.00 3.02
1827 2075 5.415701 TCATTGCCTTTCTCCTAATTGTGAC 59.584 40.000 0.00 0.00 0.00 3.67
1857 2105 7.830940 TTAAGCTATGAACATTGCAATTTGG 57.169 32.000 9.83 0.99 41.01 3.28
1865 2113 7.701539 TGAACATTGCAATTTGGTAGATACT 57.298 32.000 9.83 0.00 0.00 2.12
1866 2114 7.761409 TGAACATTGCAATTTGGTAGATACTC 58.239 34.615 9.83 0.00 0.00 2.59
1867 2115 6.699575 ACATTGCAATTTGGTAGATACTCC 57.300 37.500 9.83 0.00 0.00 3.85
1868 2116 5.594317 ACATTGCAATTTGGTAGATACTCCC 59.406 40.000 9.83 0.00 0.00 4.30
1869 2117 5.450818 TTGCAATTTGGTAGATACTCCCT 57.549 39.130 0.00 0.00 0.00 4.20
1872 2120 5.059833 GCAATTTGGTAGATACTCCCTCTG 58.940 45.833 0.00 0.00 0.00 3.35
1873 2121 5.396884 GCAATTTGGTAGATACTCCCTCTGT 60.397 44.000 0.00 0.00 0.00 3.41
1874 2122 6.284459 CAATTTGGTAGATACTCCCTCTGTC 58.716 44.000 0.00 0.00 0.00 3.51
1875 2123 3.596940 TGGTAGATACTCCCTCTGTCC 57.403 52.381 0.00 0.00 0.00 4.02
1876 2124 2.177233 TGGTAGATACTCCCTCTGTCCC 59.823 54.545 0.00 0.00 0.00 4.46
1877 2125 2.447811 GGTAGATACTCCCTCTGTCCCT 59.552 54.545 0.00 0.00 0.00 4.20
1878 2126 3.656751 GGTAGATACTCCCTCTGTCCCTA 59.343 52.174 0.00 0.00 0.00 3.53
1879 2127 4.106019 GGTAGATACTCCCTCTGTCCCTAA 59.894 50.000 0.00 0.00 0.00 2.69
1880 2128 4.901785 AGATACTCCCTCTGTCCCTAAA 57.098 45.455 0.00 0.00 0.00 1.85
1881 2129 5.426325 AGATACTCCCTCTGTCCCTAAAT 57.574 43.478 0.00 0.00 0.00 1.40
1882 2130 6.547396 AGATACTCCCTCTGTCCCTAAATA 57.453 41.667 0.00 0.00 0.00 1.40
1883 2131 7.122311 AGATACTCCCTCTGTCCCTAAATAT 57.878 40.000 0.00 0.00 0.00 1.28
1884 2132 8.245929 AGATACTCCCTCTGTCCCTAAATATA 57.754 38.462 0.00 0.00 0.00 0.86
1885 2133 8.689054 AGATACTCCCTCTGTCCCTAAATATAA 58.311 37.037 0.00 0.00 0.00 0.98
1886 2134 8.903059 ATACTCCCTCTGTCCCTAAATATAAG 57.097 38.462 0.00 0.00 0.00 1.73
1887 2135 6.935036 ACTCCCTCTGTCCCTAAATATAAGA 58.065 40.000 0.00 0.00 0.00 2.10
1888 2136 6.783482 ACTCCCTCTGTCCCTAAATATAAGAC 59.217 42.308 0.00 0.00 0.00 3.01
1889 2137 5.773680 TCCCTCTGTCCCTAAATATAAGACG 59.226 44.000 0.00 0.00 0.00 4.18
1890 2138 5.539193 CCCTCTGTCCCTAAATATAAGACGT 59.461 44.000 0.00 0.00 0.00 4.34
1891 2139 6.041751 CCCTCTGTCCCTAAATATAAGACGTT 59.958 42.308 0.00 0.00 0.00 3.99
1892 2140 7.418712 CCCTCTGTCCCTAAATATAAGACGTTT 60.419 40.741 0.00 0.00 0.00 3.60
1893 2141 7.985752 CCTCTGTCCCTAAATATAAGACGTTTT 59.014 37.037 0.00 0.00 0.00 2.43
1894 2142 9.379791 CTCTGTCCCTAAATATAAGACGTTTTT 57.620 33.333 0.00 0.00 0.00 1.94
1895 2143 9.158233 TCTGTCCCTAAATATAAGACGTTTTTG 57.842 33.333 0.00 0.00 0.00 2.44
1896 2144 7.754625 TGTCCCTAAATATAAGACGTTTTTGC 58.245 34.615 0.00 0.00 0.00 3.68
1897 2145 7.390996 TGTCCCTAAATATAAGACGTTTTTGCA 59.609 33.333 0.00 0.00 0.00 4.08
1898 2146 7.908601 GTCCCTAAATATAAGACGTTTTTGCAG 59.091 37.037 0.00 0.00 0.00 4.41
1899 2147 7.608761 TCCCTAAATATAAGACGTTTTTGCAGT 59.391 33.333 0.00 0.00 0.00 4.40
1900 2148 8.241367 CCCTAAATATAAGACGTTTTTGCAGTT 58.759 33.333 0.00 0.00 0.00 3.16
1901 2149 9.274065 CCTAAATATAAGACGTTTTTGCAGTTC 57.726 33.333 0.00 0.00 0.00 3.01
1902 2150 9.820229 CTAAATATAAGACGTTTTTGCAGTTCA 57.180 29.630 0.00 0.00 0.00 3.18
1904 2152 9.691362 AAATATAAGACGTTTTTGCAGTTCAAT 57.309 25.926 0.00 0.00 34.12 2.57
1905 2153 9.691362 AATATAAGACGTTTTTGCAGTTCAATT 57.309 25.926 0.00 0.00 34.12 2.32
1906 2154 5.949233 AAGACGTTTTTGCAGTTCAATTC 57.051 34.783 0.00 0.00 34.12 2.17
1907 2155 5.248870 AGACGTTTTTGCAGTTCAATTCT 57.751 34.783 0.00 0.00 34.12 2.40
1908 2156 5.650543 AGACGTTTTTGCAGTTCAATTCTT 58.349 33.333 0.00 0.00 34.12 2.52
1909 2157 6.791303 AGACGTTTTTGCAGTTCAATTCTTA 58.209 32.000 0.00 0.00 34.12 2.10
1910 2158 7.425606 AGACGTTTTTGCAGTTCAATTCTTAT 58.574 30.769 0.00 0.00 34.12 1.73
1911 2159 8.564574 AGACGTTTTTGCAGTTCAATTCTTATA 58.435 29.630 0.00 0.00 34.12 0.98
1912 2160 9.341899 GACGTTTTTGCAGTTCAATTCTTATAT 57.658 29.630 0.00 0.00 34.12 0.86
1913 2161 9.691362 ACGTTTTTGCAGTTCAATTCTTATATT 57.309 25.926 0.00 0.00 34.12 1.28
1940 2188 8.522542 AAGGACAGAGGTAGTACTTAATAGTG 57.477 38.462 0.00 0.00 38.36 2.74
1944 2192 9.786105 GACAGAGGTAGTACTTAATAGTGTTTC 57.214 37.037 0.00 0.00 35.78 2.78
1961 2209 7.928307 AGTGTTTCATGAATTACACTATGCT 57.072 32.000 30.96 15.90 46.72 3.79
1969 2217 8.959548 TCATGAATTACACTATGCTTGTCAATT 58.040 29.630 0.00 0.00 0.00 2.32
1971 2219 7.028962 TGAATTACACTATGCTTGTCAATTGC 58.971 34.615 0.00 0.00 0.00 3.56
1972 2220 6.764308 ATTACACTATGCTTGTCAATTGCT 57.236 33.333 0.00 0.00 0.00 3.91
1973 2221 6.573664 TTACACTATGCTTGTCAATTGCTT 57.426 33.333 0.00 0.00 0.00 3.91
2003 2251 9.890629 TCCTGATTATGCATGATTAGTTATACC 57.109 33.333 18.21 0.00 0.00 2.73
2036 2285 7.173735 TGTGTGCCAATCTGCTTCATATATTAG 59.826 37.037 0.00 0.00 0.00 1.73
2040 2289 8.048514 TGCCAATCTGCTTCATATATTAGCATA 58.951 33.333 15.95 11.36 43.33 3.14
2108 2361 6.970043 GTGTTGTGTAAAAGTATGCTTGTTGA 59.030 34.615 0.00 0.00 34.71 3.18
2109 2362 7.165812 GTGTTGTGTAAAAGTATGCTTGTTGAG 59.834 37.037 0.00 0.00 34.71 3.02
2116 2369 4.430137 AGTATGCTTGTTGAGTGCATTG 57.570 40.909 5.02 0.00 43.85 2.82
2117 2370 4.074259 AGTATGCTTGTTGAGTGCATTGA 58.926 39.130 5.02 0.00 43.85 2.57
2147 2402 6.101332 TGCCAAATAAACTGATGCAATCTTC 58.899 36.000 0.00 0.00 45.81 2.87
2149 2404 6.255020 GCCAAATAAACTGATGCAATCTTCTG 59.745 38.462 0.00 0.00 45.81 3.02
2249 2504 3.983741 AGAACTCAAACTTCAGACTCGG 58.016 45.455 0.00 0.00 0.00 4.63
2258 2513 2.283966 CAGACTCGGGAGGTGGGT 60.284 66.667 0.00 0.00 0.00 4.51
2405 2663 4.582240 TCAATACCTTGTGCACATGTTGAA 59.418 37.500 22.39 3.03 33.87 2.69
2417 2675 8.089597 TGTGCACATGTTGAATTGATTTCTTAT 58.910 29.630 17.42 0.00 35.23 1.73
2452 2710 7.982371 CATGCTGAATGTATTTTTCCTTCTC 57.018 36.000 0.00 0.00 0.00 2.87
2570 2828 2.912956 TGGGTAAGTGGAAGCTTGATCT 59.087 45.455 2.10 0.00 0.00 2.75
2581 2839 4.507335 GGAAGCTTGATCTATGCCCCATAA 60.507 45.833 2.10 0.00 0.00 1.90
2605 2868 7.472334 AGTTCTTTGCATTACTCCATCAAAT 57.528 32.000 0.00 0.00 0.00 2.32
2609 2872 8.761575 TCTTTGCATTACTCCATCAAATTTTC 57.238 30.769 0.00 0.00 0.00 2.29
2610 2873 8.587608 TCTTTGCATTACTCCATCAAATTTTCT 58.412 29.630 0.00 0.00 0.00 2.52
2611 2874 8.761575 TTTGCATTACTCCATCAAATTTTCTC 57.238 30.769 0.00 0.00 0.00 2.87
2612 2875 7.707624 TGCATTACTCCATCAAATTTTCTCT 57.292 32.000 0.00 0.00 0.00 3.10
2614 2877 9.241919 TGCATTACTCCATCAAATTTTCTCTTA 57.758 29.630 0.00 0.00 0.00 2.10
2669 2933 4.793201 TGCCATACTAACTCTCTGCTCTA 58.207 43.478 0.00 0.00 0.00 2.43
2724 2988 4.621274 GCAACTTGTATACGGGTTCCTACA 60.621 45.833 9.39 0.00 0.00 2.74
2766 3030 6.371809 AGCGTGAATCTACAGTTTGAAAAA 57.628 33.333 0.00 0.00 0.00 1.94
2790 3054 5.045578 ACCACTTGATGAGGTTAGCATACTT 60.046 40.000 0.00 0.00 36.17 2.24
2945 3209 6.264518 AGAATTGTAAACGGTTTCTTGTGGAT 59.735 34.615 9.78 0.00 0.00 3.41
3020 3284 5.387279 ACGTTACAACACTTTTGACACTTG 58.613 37.500 0.00 0.00 0.00 3.16
3021 3285 4.262045 CGTTACAACACTTTTGACACTTGC 59.738 41.667 0.00 0.00 0.00 4.01
3027 3291 5.637006 ACACTTTTGACACTTGCTACAAA 57.363 34.783 0.00 0.00 0.00 2.83
3043 3308 5.047377 TGCTACAAATTCCATTCTTGTTCCC 60.047 40.000 0.00 0.00 35.09 3.97
3047 3312 5.011023 ACAAATTCCATTCTTGTTCCCTGTC 59.989 40.000 0.00 0.00 28.99 3.51
3050 3315 4.177537 TCCATTCTTGTTCCCTGTCAAA 57.822 40.909 0.00 0.00 0.00 2.69
3135 3432 1.064832 GCCAGAGAAATCTTGAGGGCT 60.065 52.381 0.00 0.00 37.22 5.19
3249 3546 1.438651 TCTTTGGACCAGCGATTTCG 58.561 50.000 0.00 0.00 43.27 3.46
3286 3583 2.615447 CACATTCCACCCATGAGATTCG 59.385 50.000 0.00 0.00 0.00 3.34
3292 3589 1.739466 CACCCATGAGATTCGTTGTGG 59.261 52.381 0.00 0.00 0.00 4.17
3296 3593 3.338249 CCATGAGATTCGTTGTGGTCTT 58.662 45.455 0.00 0.00 0.00 3.01
3376 3787 6.830114 CTGCACTAGCCTATTACTTGTTAC 57.170 41.667 0.00 0.00 41.13 2.50
3377 3788 6.540438 TGCACTAGCCTATTACTTGTTACT 57.460 37.500 0.00 0.00 41.13 2.24
3378 3789 6.570692 TGCACTAGCCTATTACTTGTTACTC 58.429 40.000 0.00 0.00 41.13 2.59
3379 3790 6.380274 TGCACTAGCCTATTACTTGTTACTCT 59.620 38.462 0.00 0.00 41.13 3.24
3380 3791 6.919115 GCACTAGCCTATTACTTGTTACTCTC 59.081 42.308 0.00 0.00 33.58 3.20
3381 3792 7.201839 GCACTAGCCTATTACTTGTTACTCTCT 60.202 40.741 0.00 0.00 33.58 3.10
3382 3793 8.347035 CACTAGCCTATTACTTGTTACTCTCTC 58.653 40.741 0.00 0.00 0.00 3.20
3383 3794 6.718522 AGCCTATTACTTGTTACTCTCTCC 57.281 41.667 0.00 0.00 0.00 3.71
3384 3795 5.299782 AGCCTATTACTTGTTACTCTCTCCG 59.700 44.000 0.00 0.00 0.00 4.63
3385 3796 5.067544 GCCTATTACTTGTTACTCTCTCCGT 59.932 44.000 0.00 0.00 0.00 4.69
3386 3797 6.727215 CCTATTACTTGTTACTCTCTCCGTC 58.273 44.000 0.00 0.00 0.00 4.79
3387 3798 5.579564 ATTACTTGTTACTCTCTCCGTCC 57.420 43.478 0.00 0.00 0.00 4.79
3388 3799 2.169330 ACTTGTTACTCTCTCCGTCCC 58.831 52.381 0.00 0.00 0.00 4.46
3389 3800 2.168496 CTTGTTACTCTCTCCGTCCCA 58.832 52.381 0.00 0.00 0.00 4.37
3390 3801 2.526888 TGTTACTCTCTCCGTCCCAT 57.473 50.000 0.00 0.00 0.00 4.00
3391 3802 3.657398 TGTTACTCTCTCCGTCCCATA 57.343 47.619 0.00 0.00 0.00 2.74
3392 3803 3.972133 TGTTACTCTCTCCGTCCCATAA 58.028 45.455 0.00 0.00 0.00 1.90
3393 3804 4.543689 TGTTACTCTCTCCGTCCCATAAT 58.456 43.478 0.00 0.00 0.00 1.28
3394 3805 5.698104 TGTTACTCTCTCCGTCCCATAATA 58.302 41.667 0.00 0.00 0.00 0.98
3395 3806 6.312529 TGTTACTCTCTCCGTCCCATAATAT 58.687 40.000 0.00 0.00 0.00 1.28
3396 3807 7.464273 TGTTACTCTCTCCGTCCCATAATATA 58.536 38.462 0.00 0.00 0.00 0.86
3397 3808 7.946219 TGTTACTCTCTCCGTCCCATAATATAA 59.054 37.037 0.00 0.00 0.00 0.98
3398 3809 8.460428 GTTACTCTCTCCGTCCCATAATATAAG 58.540 40.741 0.00 0.00 0.00 1.73
3399 3810 6.791371 ACTCTCTCCGTCCCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
3400 3811 7.239438 ACTCTCTCCGTCCCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
3401 3812 7.177041 ACTCTCTCCGTCCCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
3402 3813 6.150641 TCTCTCCGTCCCATAATATAAGAACG 59.849 42.308 0.00 0.00 0.00 3.95
3403 3814 5.771666 TCTCCGTCCCATAATATAAGAACGT 59.228 40.000 0.00 0.00 0.00 3.99
3404 3815 6.266103 TCTCCGTCCCATAATATAAGAACGTT 59.734 38.462 0.00 0.00 0.00 3.99
3405 3816 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3406 3817 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3407 3818 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3408 3819 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3409 3820 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3410 3821 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3411 3822 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3412 3823 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3421 3832 7.781548 AGAACGTTTTTGACACTAATGTAGT 57.218 32.000 0.46 0.00 39.95 2.73
3451 3862 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3452 3863 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3453 3864 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
3454 3865 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3455 3866 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
3456 3867 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
3466 3877 3.055747 GGGACAGAGGGAGTAGAAAAGTG 60.056 52.174 0.00 0.00 0.00 3.16
3490 3902 7.914346 GTGGAGCAGATTTTCTTTATTCTGATG 59.086 37.037 3.11 0.00 38.25 3.07
3578 3990 6.212589 TGTCACAAGATGATAACAGAGGGTAA 59.787 38.462 0.00 0.00 40.28 2.85
3586 3998 9.386122 AGATGATAACAGAGGGTAATACTCATT 57.614 33.333 0.00 0.00 37.43 2.57
3620 4032 5.767816 ACCTTTGTAACCATCTGTTTGTC 57.232 39.130 0.00 0.00 38.42 3.18
3634 4050 6.844696 TCTGTTTGTCATCACTTGTACTTC 57.155 37.500 0.00 0.00 0.00 3.01
3636 4052 6.479990 TCTGTTTGTCATCACTTGTACTTCAG 59.520 38.462 0.00 0.00 0.00 3.02
3644 4061 5.353394 TCACTTGTACTTCAGTGTTCCTT 57.647 39.130 15.63 0.00 34.27 3.36
3650 4067 8.648693 ACTTGTACTTCAGTGTTCCTTTATACT 58.351 33.333 0.00 0.00 0.00 2.12
3655 4072 7.690256 ACTTCAGTGTTCCTTTATACTGGAAT 58.310 34.615 8.38 0.00 43.25 3.01
3667 4084 8.592809 CCTTTATACTGGAATCTAATCAGCTCT 58.407 37.037 0.00 0.00 32.19 4.09
3693 4110 4.374689 TGGCAGGTTGGAGTTATTTGTA 57.625 40.909 0.00 0.00 0.00 2.41
3761 4178 5.362143 AGATTGCAGAGATGCTACTGAAGTA 59.638 40.000 0.00 0.00 36.38 2.24
3773 4190 2.767505 ACTGAAGTAACCGCCTTTCTG 58.232 47.619 0.00 0.00 0.00 3.02
3774 4191 2.104281 ACTGAAGTAACCGCCTTTCTGT 59.896 45.455 0.00 0.00 0.00 3.41
3775 4192 3.322828 ACTGAAGTAACCGCCTTTCTGTA 59.677 43.478 0.00 0.00 32.35 2.74
3776 4193 4.020485 ACTGAAGTAACCGCCTTTCTGTAT 60.020 41.667 0.00 0.00 32.35 2.29
3777 4194 4.501071 TGAAGTAACCGCCTTTCTGTATC 58.499 43.478 0.00 0.00 0.00 2.24
3779 4196 4.388378 AGTAACCGCCTTTCTGTATCTC 57.612 45.455 0.00 0.00 0.00 2.75
3781 4198 3.983044 AACCGCCTTTCTGTATCTCTT 57.017 42.857 0.00 0.00 0.00 2.85
3783 4200 4.287766 ACCGCCTTTCTGTATCTCTTTT 57.712 40.909 0.00 0.00 0.00 2.27
3784 4201 4.003648 ACCGCCTTTCTGTATCTCTTTTG 58.996 43.478 0.00 0.00 0.00 2.44
3786 4203 4.455877 CCGCCTTTCTGTATCTCTTTTGTT 59.544 41.667 0.00 0.00 0.00 2.83
3787 4204 5.642063 CCGCCTTTCTGTATCTCTTTTGTTA 59.358 40.000 0.00 0.00 0.00 2.41
3788 4205 6.148811 CCGCCTTTCTGTATCTCTTTTGTTAA 59.851 38.462 0.00 0.00 0.00 2.01
3789 4206 7.308348 CCGCCTTTCTGTATCTCTTTTGTTAAA 60.308 37.037 0.00 0.00 0.00 1.52
3795 4212 9.677567 TTCTGTATCTCTTTTGTTAAACATTGC 57.322 29.630 0.00 0.00 0.00 3.56
3796 4213 9.066892 TCTGTATCTCTTTTGTTAAACATTGCT 57.933 29.630 0.00 0.00 0.00 3.91
3799 4217 9.129209 GTATCTCTTTTGTTAAACATTGCTTCC 57.871 33.333 0.00 0.00 0.00 3.46
3801 4219 7.202526 TCTCTTTTGTTAAACATTGCTTCCAG 58.797 34.615 0.00 0.00 0.00 3.86
3830 4249 5.360999 TGGTGGATTGATGTACTCTAGTCAG 59.639 44.000 0.00 0.00 0.00 3.51
3834 4253 7.276658 GTGGATTGATGTACTCTAGTCAGTTTG 59.723 40.741 0.00 0.00 0.00 2.93
3836 4255 8.200792 GGATTGATGTACTCTAGTCAGTTTGAT 58.799 37.037 0.00 0.00 0.00 2.57
3838 4257 7.946381 TGATGTACTCTAGTCAGTTTGATCT 57.054 36.000 0.00 0.00 0.00 2.75
3856 4276 1.406180 TCTCAGTTTTGGTCGTCGTCA 59.594 47.619 0.00 0.00 0.00 4.35
3869 4289 6.157904 TGGTCGTCGTCATTTTTGTAATCTA 58.842 36.000 0.00 0.00 0.00 1.98
3874 4301 8.377681 TCGTCGTCATTTTTGTAATCTATCAAC 58.622 33.333 0.00 0.00 0.00 3.18
3875 4302 7.634817 CGTCGTCATTTTTGTAATCTATCAACC 59.365 37.037 0.00 0.00 0.00 3.77
3876 4303 8.665685 GTCGTCATTTTTGTAATCTATCAACCT 58.334 33.333 0.00 0.00 0.00 3.50
3877 4304 9.878667 TCGTCATTTTTGTAATCTATCAACCTA 57.121 29.630 0.00 0.00 0.00 3.08
3879 4306 9.937175 GTCATTTTTGTAATCTATCAACCTAGC 57.063 33.333 0.00 0.00 0.00 3.42
3880 4307 9.679661 TCATTTTTGTAATCTATCAACCTAGCA 57.320 29.630 0.00 0.00 0.00 3.49
3885 4312 6.516718 TGTAATCTATCAACCTAGCAGAAGC 58.483 40.000 0.00 0.00 42.56 3.86
3896 4323 2.357517 CAGAAGCGCAAGACGGGT 60.358 61.111 11.47 0.00 43.93 5.28
3936 4363 3.002042 CACAGAAGTGCAGTCAGAAGTTG 59.998 47.826 0.00 0.00 39.21 3.16
3948 4375 4.410555 AGTCAGAAGTTGAGAAAAGGAGGT 59.589 41.667 0.00 0.00 36.21 3.85
3957 4384 6.095580 AGTTGAGAAAAGGAGGTTTTTCACTC 59.904 38.462 12.19 0.00 45.23 3.51
3987 4414 2.286365 TGCCTTAGGTTGGTCTTTGG 57.714 50.000 0.00 0.00 0.00 3.28
3988 4415 1.497286 TGCCTTAGGTTGGTCTTTGGT 59.503 47.619 0.00 0.00 0.00 3.67
3989 4416 1.886542 GCCTTAGGTTGGTCTTTGGTG 59.113 52.381 0.00 0.00 0.00 4.17
3990 4417 2.751816 GCCTTAGGTTGGTCTTTGGTGT 60.752 50.000 0.00 0.00 0.00 4.16
3991 4418 3.146847 CCTTAGGTTGGTCTTTGGTGTC 58.853 50.000 0.00 0.00 0.00 3.67
3992 4419 3.434453 CCTTAGGTTGGTCTTTGGTGTCA 60.434 47.826 0.00 0.00 0.00 3.58
3993 4420 2.818751 AGGTTGGTCTTTGGTGTCAA 57.181 45.000 0.00 0.00 0.00 3.18
4013 4440 4.560819 TCAATTGCAAGTTTGTCGTTTGTC 59.439 37.500 4.94 0.00 0.00 3.18
4015 4442 3.129852 TGCAAGTTTGTCGTTTGTCTG 57.870 42.857 0.00 0.00 0.00 3.51
4017 4444 2.845967 GCAAGTTTGTCGTTTGTCTGTG 59.154 45.455 0.00 0.00 0.00 3.66
4018 4445 3.425404 CAAGTTTGTCGTTTGTCTGTGG 58.575 45.455 0.00 0.00 0.00 4.17
4019 4446 2.980568 AGTTTGTCGTTTGTCTGTGGA 58.019 42.857 0.00 0.00 0.00 4.02
4020 4447 2.676342 AGTTTGTCGTTTGTCTGTGGAC 59.324 45.455 0.00 0.00 42.42 4.02
4029 4456 2.946947 GTCTGTGGACAATGGGGTG 58.053 57.895 0.00 0.00 41.75 4.61
4030 4457 0.400213 GTCTGTGGACAATGGGGTGA 59.600 55.000 0.00 0.00 41.75 4.02
4031 4458 0.692476 TCTGTGGACAATGGGGTGAG 59.308 55.000 0.00 0.00 0.00 3.51
4032 4459 0.962356 CTGTGGACAATGGGGTGAGC 60.962 60.000 0.00 0.00 0.00 4.26
4033 4460 2.040544 GTGGACAATGGGGTGAGCG 61.041 63.158 0.00 0.00 0.00 5.03
4034 4461 2.438434 GGACAATGGGGTGAGCGG 60.438 66.667 0.00 0.00 0.00 5.52
4035 4462 2.438434 GACAATGGGGTGAGCGGG 60.438 66.667 0.00 0.00 0.00 6.13
4036 4463 3.256960 ACAATGGGGTGAGCGGGT 61.257 61.111 0.00 0.00 0.00 5.28
4037 4464 2.035626 CAATGGGGTGAGCGGGTT 59.964 61.111 0.00 0.00 0.00 4.11
4038 4465 2.035626 AATGGGGTGAGCGGGTTG 59.964 61.111 0.00 0.00 0.00 3.77
4039 4466 4.740822 ATGGGGTGAGCGGGTTGC 62.741 66.667 0.00 0.00 46.98 4.17
4048 4475 3.064324 GCGGGTTGCATTCAGGCT 61.064 61.111 0.00 0.00 45.45 4.58
4049 4476 2.639327 GCGGGTTGCATTCAGGCTT 61.639 57.895 0.00 0.00 45.45 4.35
4050 4477 1.213537 CGGGTTGCATTCAGGCTTG 59.786 57.895 0.00 0.00 34.04 4.01
4051 4478 1.243342 CGGGTTGCATTCAGGCTTGA 61.243 55.000 0.00 0.00 34.04 3.02
4052 4479 0.968405 GGGTTGCATTCAGGCTTGAA 59.032 50.000 14.17 14.17 46.67 2.69
4053 4480 1.337167 GGGTTGCATTCAGGCTTGAAC 60.337 52.381 14.09 2.79 45.54 3.18
4054 4481 1.340889 GGTTGCATTCAGGCTTGAACA 59.659 47.619 14.09 5.59 45.54 3.18
4055 4482 2.028748 GGTTGCATTCAGGCTTGAACAT 60.029 45.455 14.09 0.00 45.54 2.71
4056 4483 3.555586 GGTTGCATTCAGGCTTGAACATT 60.556 43.478 14.09 0.00 45.54 2.71
4057 4484 4.060205 GTTGCATTCAGGCTTGAACATTT 58.940 39.130 14.09 0.00 45.54 2.32
4058 4485 3.916761 TGCATTCAGGCTTGAACATTTC 58.083 40.909 14.09 2.45 45.54 2.17
4059 4486 2.919229 GCATTCAGGCTTGAACATTTCG 59.081 45.455 14.09 0.18 45.54 3.46
4060 4487 3.366273 GCATTCAGGCTTGAACATTTCGA 60.366 43.478 14.09 0.00 45.54 3.71
4061 4488 4.409570 CATTCAGGCTTGAACATTTCGAG 58.590 43.478 14.09 0.00 45.54 4.04
4062 4489 2.426522 TCAGGCTTGAACATTTCGAGG 58.573 47.619 0.00 0.00 40.79 4.63
4063 4490 2.154462 CAGGCTTGAACATTTCGAGGT 58.846 47.619 5.51 0.00 40.79 3.85
4064 4491 2.095567 CAGGCTTGAACATTTCGAGGTG 60.096 50.000 5.51 0.00 40.79 4.00
4065 4492 1.401539 GGCTTGAACATTTCGAGGTGC 60.402 52.381 5.51 0.00 40.79 5.01
4092 4519 3.244422 CCTGGTCTGCTGTAACTTTACCA 60.244 47.826 0.00 0.00 34.52 3.25
4094 4521 2.735134 GGTCTGCTGTAACTTTACCACG 59.265 50.000 0.00 0.00 32.72 4.94
4103 4530 2.651382 ACTTTACCACGAAAGCCCTT 57.349 45.000 0.00 0.00 39.60 3.95
4106 4533 1.886886 TTACCACGAAAGCCCTTGAC 58.113 50.000 0.00 0.00 0.00 3.18
4117 4544 0.392461 GCCCTTGACATAACGAGGCA 60.392 55.000 0.00 0.00 39.45 4.75
4148 4575 5.191722 GGGGATCTATATATGAAGGGCAACA 59.808 44.000 0.00 0.00 39.74 3.33
4159 4586 2.603075 AGGGCAACATGTGTACCATT 57.397 45.000 0.00 0.00 39.74 3.16
4167 4594 5.521735 GCAACATGTGTACCATTCAACAAAA 59.478 36.000 0.00 0.00 0.00 2.44
4168 4595 6.202570 GCAACATGTGTACCATTCAACAAAAT 59.797 34.615 0.00 0.00 0.00 1.82
4172 4599 7.768120 ACATGTGTACCATTCAACAAAATGTTT 59.232 29.630 0.00 0.00 38.77 2.83
4223 4651 3.346426 AAGGGCTGCTGTAACCTTG 57.654 52.632 12.86 0.00 41.53 3.61
4227 4657 2.343426 GCTGCTGTAACCTTGCCCC 61.343 63.158 0.00 0.00 0.00 5.80
4228 4658 2.033448 TGCTGTAACCTTGCCCCG 59.967 61.111 0.00 0.00 0.00 5.73
4241 4671 1.226262 GCCCCGAAGCCCTGAAATA 59.774 57.895 0.00 0.00 0.00 1.40
4283 4722 9.224267 GAAATCTATATTGTGTGCCATATGACT 57.776 33.333 3.65 0.00 0.00 3.41
4284 4725 9.578576 AAATCTATATTGTGTGCCATATGACTT 57.421 29.630 3.65 0.00 0.00 3.01
4290 4731 4.905429 TGTGTGCCATATGACTTAGTGTT 58.095 39.130 3.65 0.00 0.00 3.32
4295 4737 4.080919 TGCCATATGACTTAGTGTTGAGCT 60.081 41.667 3.65 0.00 0.00 4.09
4322 4791 7.856145 AAGCTTCCATTACTATTTCAGTGAG 57.144 36.000 0.00 0.00 38.24 3.51
4389 5511 3.071747 TGTGGTTTAAAATTTCCAGGGGC 59.928 43.478 0.00 0.00 0.00 5.80
4403 5525 1.228737 GGGGCTGGCTTTTGTACCA 60.229 57.895 0.00 0.00 0.00 3.25
4420 5542 0.914644 CCAGCAGGAGGAGAATTGGA 59.085 55.000 0.00 0.00 36.89 3.53
4431 5553 5.393896 GGAGGAGAATTGGAAGCAATCAAAG 60.394 44.000 0.00 0.00 0.00 2.77
4432 5554 5.082425 AGGAGAATTGGAAGCAATCAAAGT 58.918 37.500 0.00 0.00 0.00 2.66
4448 5571 4.335416 TCAAAGTTGGATCCCACATCTTC 58.665 43.478 17.71 0.00 30.78 2.87
4449 5572 3.372440 AAGTTGGATCCCACATCTTCC 57.628 47.619 17.71 0.00 30.78 3.46
4450 5573 2.566746 AGTTGGATCCCACATCTTCCT 58.433 47.619 17.71 0.00 30.78 3.36
4451 5574 2.507471 AGTTGGATCCCACATCTTCCTC 59.493 50.000 17.71 0.00 30.78 3.71
4452 5575 1.123077 TGGATCCCACATCTTCCTCG 58.877 55.000 9.90 0.00 0.00 4.63
4453 5576 1.123928 GGATCCCACATCTTCCTCGT 58.876 55.000 0.00 0.00 0.00 4.18
4454 5577 1.486726 GGATCCCACATCTTCCTCGTT 59.513 52.381 0.00 0.00 0.00 3.85
4455 5578 2.483889 GGATCCCACATCTTCCTCGTTC 60.484 54.545 0.00 0.00 0.00 3.95
4456 5579 1.639722 TCCCACATCTTCCTCGTTCA 58.360 50.000 0.00 0.00 0.00 3.18
4457 5580 1.550524 TCCCACATCTTCCTCGTTCAG 59.449 52.381 0.00 0.00 0.00 3.02
4458 5581 1.550524 CCCACATCTTCCTCGTTCAGA 59.449 52.381 0.00 0.00 0.00 3.27
4459 5582 2.417924 CCCACATCTTCCTCGTTCAGAG 60.418 54.545 0.00 0.00 46.44 3.35
4460 5583 2.266554 CACATCTTCCTCGTTCAGAGC 58.733 52.381 0.00 0.00 45.54 4.09
4461 5584 2.094286 CACATCTTCCTCGTTCAGAGCT 60.094 50.000 0.00 0.00 45.54 4.09
4462 5585 2.564947 ACATCTTCCTCGTTCAGAGCTT 59.435 45.455 0.00 0.00 45.54 3.74
4463 5586 3.186119 CATCTTCCTCGTTCAGAGCTTC 58.814 50.000 0.00 0.00 45.54 3.86
4464 5587 1.546476 TCTTCCTCGTTCAGAGCTTCC 59.454 52.381 0.00 0.00 45.54 3.46
4465 5588 1.273606 CTTCCTCGTTCAGAGCTTCCA 59.726 52.381 0.00 0.00 45.54 3.53
4466 5589 0.891373 TCCTCGTTCAGAGCTTCCAG 59.109 55.000 0.00 0.00 45.54 3.86
4467 5590 0.891373 CCTCGTTCAGAGCTTCCAGA 59.109 55.000 0.00 0.00 45.54 3.86
4468 5591 1.403514 CCTCGTTCAGAGCTTCCAGAC 60.404 57.143 0.00 0.00 45.54 3.51
4499 5622 1.620822 GCCATGGGAACTTTCACTGT 58.379 50.000 15.13 0.00 0.00 3.55
4512 5635 4.274459 ACTTTCACTGTCATCAAACTCAGC 59.726 41.667 0.00 0.00 0.00 4.26
4514 5637 3.807553 TCACTGTCATCAAACTCAGCAA 58.192 40.909 0.00 0.00 0.00 3.91
4523 5646 5.242171 TCATCAAACTCAGCAAACACATCAT 59.758 36.000 0.00 0.00 0.00 2.45
4526 5649 6.339730 TCAAACTCAGCAAACACATCATTTT 58.660 32.000 0.00 0.00 0.00 1.82
4527 5650 6.476380 TCAAACTCAGCAAACACATCATTTTC 59.524 34.615 0.00 0.00 0.00 2.29
4528 5651 5.779529 ACTCAGCAAACACATCATTTTCT 57.220 34.783 0.00 0.00 0.00 2.52
4529 5652 6.152932 ACTCAGCAAACACATCATTTTCTT 57.847 33.333 0.00 0.00 0.00 2.52
4530 5653 6.576185 ACTCAGCAAACACATCATTTTCTTT 58.424 32.000 0.00 0.00 0.00 2.52
4531 5654 6.698766 ACTCAGCAAACACATCATTTTCTTTC 59.301 34.615 0.00 0.00 0.00 2.62
4558 5681 6.507900 TCTTTCTTGTGTGTGAAAACAAACA 58.492 32.000 0.00 0.00 36.17 2.83
4570 5693 6.808704 TGTGAAAACAAACACATCAATTCGAA 59.191 30.769 0.00 0.00 41.19 3.71
4583 5706 6.869913 ACATCAATTCGAAAATCAATTGCAGT 59.130 30.769 0.00 0.70 39.08 4.40
4634 5842 1.908619 GGGGGCACATGAGGAAATTTT 59.091 47.619 0.00 0.00 0.00 1.82
4741 5949 7.757941 TTCTCATCAAACACAATCAACCATA 57.242 32.000 0.00 0.00 0.00 2.74
4759 5967 3.531538 CATATGAAGCAACCACCGTACT 58.468 45.455 0.00 0.00 0.00 2.73
4766 5974 2.516888 AACCACCGTACTGGCTGCT 61.517 57.895 0.00 0.00 43.94 4.24
4861 6071 1.066303 GTTCATTGTCCCACGCAAACA 59.934 47.619 0.00 0.00 0.00 2.83
4875 6085 3.564225 ACGCAAACAAACCCAAACAAAAA 59.436 34.783 0.00 0.00 0.00 1.94
4887 6098 5.009811 ACCCAAACAAAAATTTCATGCATGG 59.990 36.000 25.97 10.03 0.00 3.66
4904 6115 0.893270 TGGCATCAACCCTTGAACCG 60.893 55.000 0.00 0.00 43.95 4.44
4986 6197 4.738998 TTCACGCCATGCCCCTGG 62.739 66.667 0.00 0.00 39.45 4.45
5134 6345 1.294857 GCCATCTCCTTCGCTTTCTC 58.705 55.000 0.00 0.00 0.00 2.87
5211 6422 2.087646 GTCCTCTGCCTTTTGACATCC 58.912 52.381 0.00 0.00 0.00 3.51
5289 6500 1.205417 CGTGTATTGGTTCCTACCCGT 59.795 52.381 0.00 0.00 44.35 5.28
5394 6605 0.252881 ACTGATGGCCAGAAGAGGGA 60.253 55.000 21.24 0.00 45.78 4.20
5395 6606 0.914644 CTGATGGCCAGAAGAGGGAA 59.085 55.000 13.05 0.00 45.78 3.97
5396 6607 1.283029 CTGATGGCCAGAAGAGGGAAA 59.717 52.381 13.05 0.00 45.78 3.13
5399 6610 1.995376 TGGCCAGAAGAGGGAAAAAC 58.005 50.000 0.00 0.00 0.00 2.43
5423 6634 2.628657 AGGTTAGGAATAGCTACAGCCG 59.371 50.000 0.00 0.00 43.38 5.52
5433 6644 6.649557 GGAATAGCTACAGCCGTTATAACAAT 59.350 38.462 15.67 0.00 43.38 2.71
5434 6645 7.360101 GGAATAGCTACAGCCGTTATAACAATG 60.360 40.741 15.67 11.97 43.38 2.82
5435 6646 4.127171 AGCTACAGCCGTTATAACAATGG 58.873 43.478 15.67 9.58 43.38 3.16
5436 6647 3.250040 GCTACAGCCGTTATAACAATGGG 59.750 47.826 15.67 9.25 34.31 4.00
5437 6648 3.637911 ACAGCCGTTATAACAATGGGA 57.362 42.857 15.67 0.00 0.00 4.37
5439 6650 3.945285 ACAGCCGTTATAACAATGGGAAG 59.055 43.478 15.67 7.00 0.00 3.46
5445 6678 5.592688 CCGTTATAACAATGGGAAGGAACAT 59.407 40.000 15.67 0.00 0.00 2.71
5451 6684 6.840780 AACAATGGGAAGGAACATAGAAAG 57.159 37.500 0.00 0.00 0.00 2.62
5467 6700 2.668457 AGAAAGCGATAGACAAAGCACG 59.332 45.455 0.00 0.00 39.76 5.34
5481 6714 6.017109 AGACAAAGCACGAGAACATGTTTAAT 60.017 34.615 13.36 1.93 0.00 1.40
5497 6730 6.757897 TGTTTAATGGGTTGATCTAGCTTG 57.242 37.500 6.33 0.00 0.00 4.01
5499 6732 5.450818 TTAATGGGTTGATCTAGCTTGGT 57.549 39.130 6.33 0.00 0.00 3.67
5501 6734 4.696479 ATGGGTTGATCTAGCTTGGTAG 57.304 45.455 6.33 0.83 0.00 3.18
5563 6796 5.817988 TCAGACGATATCTTTGGTAAGACG 58.182 41.667 0.34 0.00 42.91 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 4.367023 CGGACGCGAGGGGTGAAA 62.367 66.667 15.93 0.00 0.00 2.69
534 545 3.832981 CGACTTAAACGGACGCGT 58.167 55.556 13.85 13.85 0.00 6.01
566 577 2.666862 TCGGCGCGGACACAAAAT 60.667 55.556 14.27 0.00 0.00 1.82
591 602 5.529430 TGACACATTTCGTCTGTTGGTATTT 59.471 36.000 0.00 0.00 34.37 1.40
595 606 2.612212 GTGACACATTTCGTCTGTTGGT 59.388 45.455 0.00 0.00 34.37 3.67
637 648 6.202570 GGAATGCTGCTTTTGTATTTTGAACA 59.797 34.615 0.00 0.00 0.00 3.18
638 649 6.593072 GGAATGCTGCTTTTGTATTTTGAAC 58.407 36.000 0.00 0.00 0.00 3.18
640 651 4.922692 CGGAATGCTGCTTTTGTATTTTGA 59.077 37.500 0.00 0.00 0.00 2.69
641 652 4.434593 GCGGAATGCTGCTTTTGTATTTTG 60.435 41.667 0.00 0.00 43.23 2.44
643 654 3.253230 GCGGAATGCTGCTTTTGTATTT 58.747 40.909 0.00 0.00 43.23 1.40
644 655 2.731968 CGCGGAATGCTGCTTTTGTATT 60.732 45.455 2.19 0.00 44.41 1.89
647 658 1.081242 CGCGGAATGCTGCTTTTGT 60.081 52.632 2.19 0.00 44.41 2.83
648 659 1.802715 CCGCGGAATGCTGCTTTTG 60.803 57.895 24.07 0.00 44.41 2.44
649 660 1.926511 CTCCGCGGAATGCTGCTTTT 61.927 55.000 30.53 0.00 44.41 2.27
651 662 2.821366 CTCCGCGGAATGCTGCTT 60.821 61.111 30.53 0.00 44.41 3.91
657 668 4.609018 ATCCGGCTCCGCGGAATG 62.609 66.667 30.53 19.79 35.66 2.67
658 669 4.301027 GATCCGGCTCCGCGGAAT 62.301 66.667 30.53 19.47 35.66 3.01
665 676 2.527875 ATCAGGGGATCCGGCTCC 60.528 66.667 16.35 16.35 38.33 4.70
667 678 1.122019 GTACATCAGGGGATCCGGCT 61.122 60.000 5.45 0.00 38.33 5.52
669 680 1.666011 CGTACATCAGGGGATCCGG 59.334 63.158 5.45 0.00 38.33 5.14
670 681 1.666011 CCGTACATCAGGGGATCCG 59.334 63.158 5.45 0.00 38.33 4.18
677 688 1.153369 CAGGTGCCCGTACATCAGG 60.153 63.158 0.00 0.00 0.00 3.86
678 689 0.460284 GTCAGGTGCCCGTACATCAG 60.460 60.000 0.00 0.00 0.00 2.90
679 690 1.594833 GTCAGGTGCCCGTACATCA 59.405 57.895 0.00 0.00 0.00 3.07
680 691 1.518572 CGTCAGGTGCCCGTACATC 60.519 63.158 0.00 0.00 0.00 3.06
681 692 1.823169 AACGTCAGGTGCCCGTACAT 61.823 55.000 0.00 0.00 33.88 2.29
682 693 2.500714 AACGTCAGGTGCCCGTACA 61.501 57.895 0.00 0.00 33.88 2.90
683 694 2.025418 CAACGTCAGGTGCCCGTAC 61.025 63.158 0.00 0.00 33.88 3.67
684 695 2.340809 CAACGTCAGGTGCCCGTA 59.659 61.111 0.00 0.00 33.88 4.02
689 700 4.947147 TGGCCCAACGTCAGGTGC 62.947 66.667 0.00 8.28 32.58 5.01
692 703 2.669569 CAGTGGCCCAACGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
693 704 1.961277 GTCAGTGGCCCAACGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
694 705 2.110213 GTCAGTGGCCCAACGTCA 59.890 61.111 0.00 0.00 0.00 4.35
695 706 3.041940 CGTCAGTGGCCCAACGTC 61.042 66.667 0.00 0.00 0.00 4.34
717 728 4.368543 GACGTGTGGACCCGGACC 62.369 72.222 0.73 6.89 0.00 4.46
718 729 3.569049 CTGACGTGTGGACCCGGAC 62.569 68.421 0.73 0.00 0.00 4.79
719 730 3.299977 CTGACGTGTGGACCCGGA 61.300 66.667 0.73 0.00 0.00 5.14
722 733 3.916392 CTCGCTGACGTGTGGACCC 62.916 68.421 0.00 0.00 41.18 4.46
723 734 2.430921 CTCGCTGACGTGTGGACC 60.431 66.667 0.00 0.00 41.18 4.46
724 735 2.335369 ACTCGCTGACGTGTGGAC 59.665 61.111 0.00 0.00 43.76 4.02
737 748 4.746951 TGACGTACGGCGCACTCG 62.747 66.667 21.06 6.32 46.11 4.18
738 749 2.874780 CTGACGTACGGCGCACTC 60.875 66.667 21.06 7.29 46.11 3.51
740 751 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
741 752 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
742 753 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
744 755 2.102553 GCTCCTCTGACGTACGGC 59.897 66.667 21.06 18.72 0.00 5.68
745 756 1.429825 CAGCTCCTCTGACGTACGG 59.570 63.158 21.06 1.50 45.72 4.02
746 757 1.226435 GCAGCTCCTCTGACGTACG 60.226 63.158 15.01 15.01 45.72 3.67
747 758 1.226435 CGCAGCTCCTCTGACGTAC 60.226 63.158 0.00 0.00 45.72 3.67
748 759 1.645704 GACGCAGCTCCTCTGACGTA 61.646 60.000 11.86 0.00 46.96 3.57
749 760 2.986413 ACGCAGCTCCTCTGACGT 60.986 61.111 0.00 0.00 45.72 4.34
750 761 2.202544 GACGCAGCTCCTCTGACG 60.203 66.667 0.00 2.37 45.72 4.35
751 762 2.183046 GGACGCAGCTCCTCTGAC 59.817 66.667 4.17 0.00 45.72 3.51
769 780 3.499737 CACGGGACAGCGGAATGC 61.500 66.667 0.00 0.00 46.98 3.56
770 781 2.819595 CCACGGGACAGCGGAATG 60.820 66.667 0.00 0.00 0.00 2.67
771 782 4.096003 CCCACGGGACAGCGGAAT 62.096 66.667 0.00 0.00 37.50 3.01
826 1051 2.706339 TGCCAAATTGGTGTTTGCTT 57.294 40.000 14.17 0.00 40.46 3.91
867 1092 4.367023 TTTCGTGCTCGGGGTCGG 62.367 66.667 8.49 0.00 37.69 4.79
868 1093 3.110178 GTTTCGTGCTCGGGGTCG 61.110 66.667 8.49 0.00 37.69 4.79
869 1094 3.110178 CGTTTCGTGCTCGGGGTC 61.110 66.667 8.49 0.00 37.69 4.46
920 1150 4.893601 TTGTTCCGTGGACGCGCA 62.894 61.111 5.73 0.00 38.18 6.09
921 1151 2.649843 TTTTTGTTCCGTGGACGCGC 62.650 55.000 5.73 0.00 38.18 6.86
922 1152 0.040781 ATTTTTGTTCCGTGGACGCG 60.041 50.000 3.53 3.53 38.18 6.01
923 1153 1.664874 GGATTTTTGTTCCGTGGACGC 60.665 52.381 0.00 0.00 38.18 5.19
924 1154 1.604755 TGGATTTTTGTTCCGTGGACG 59.395 47.619 0.00 0.00 35.94 4.79
925 1155 2.030274 CCTGGATTTTTGTTCCGTGGAC 60.030 50.000 0.00 0.00 35.94 4.02
926 1156 2.235016 CCTGGATTTTTGTTCCGTGGA 58.765 47.619 0.00 0.00 35.94 4.02
927 1157 1.272212 CCCTGGATTTTTGTTCCGTGG 59.728 52.381 0.00 0.00 35.94 4.94
928 1158 2.228822 CTCCCTGGATTTTTGTTCCGTG 59.771 50.000 0.00 0.00 35.94 4.94
929 1159 2.107552 TCTCCCTGGATTTTTGTTCCGT 59.892 45.455 0.00 0.00 35.94 4.69
930 1160 2.790433 TCTCCCTGGATTTTTGTTCCG 58.210 47.619 0.00 0.00 35.94 4.30
931 1161 4.262463 GGTTTCTCCCTGGATTTTTGTTCC 60.262 45.833 0.00 0.00 0.00 3.62
932 1162 4.883083 GGTTTCTCCCTGGATTTTTGTTC 58.117 43.478 0.00 0.00 0.00 3.18
933 1163 4.955811 GGTTTCTCCCTGGATTTTTGTT 57.044 40.909 0.00 0.00 0.00 2.83
946 1176 0.324368 GGATTGGGTGGGGTTTCTCC 60.324 60.000 0.00 0.00 0.00 3.71
947 1177 0.324368 GGGATTGGGTGGGGTTTCTC 60.324 60.000 0.00 0.00 0.00 2.87
948 1178 1.781001 GGGATTGGGTGGGGTTTCT 59.219 57.895 0.00 0.00 0.00 2.52
949 1179 1.305802 GGGGATTGGGTGGGGTTTC 60.306 63.158 0.00 0.00 0.00 2.78
950 1180 2.866378 GGGGATTGGGTGGGGTTT 59.134 61.111 0.00 0.00 0.00 3.27
951 1181 3.280968 GGGGGATTGGGTGGGGTT 61.281 66.667 0.00 0.00 0.00 4.11
952 1182 4.317776 AGGGGGATTGGGTGGGGT 62.318 66.667 0.00 0.00 0.00 4.95
1280 1521 2.793317 TAGTCCCGGCCCTCGAAGTT 62.793 60.000 0.00 0.00 42.43 2.66
1528 1769 2.463589 TAGAGCAGTTGGGGTTGGCG 62.464 60.000 0.00 0.00 0.00 5.69
1543 1784 3.306849 CCATGAGGCAGATGATGGTAGAG 60.307 52.174 0.00 0.00 32.20 2.43
1598 1839 0.459489 AGGCAACATTTGTGCAACGT 59.541 45.000 0.00 0.00 38.95 3.99
1600 1841 2.033832 CGAAAGGCAACATTTGTGCAAC 60.034 45.455 0.00 0.00 41.41 4.17
1608 1849 1.613437 CAGGGAACGAAAGGCAACATT 59.387 47.619 0.00 0.00 41.41 2.71
1613 1854 0.467290 AAAGCAGGGAACGAAAGGCA 60.467 50.000 0.00 0.00 0.00 4.75
1635 1876 6.982141 ACGTAGTTTCAAGTGTTAATGTCAGA 59.018 34.615 0.00 0.00 37.78 3.27
1636 1877 7.173863 ACGTAGTTTCAAGTGTTAATGTCAG 57.826 36.000 0.00 0.00 37.78 3.51
1637 1878 8.645730 TTACGTAGTTTCAAGTGTTAATGTCA 57.354 30.769 0.00 0.00 37.78 3.58
1638 1879 9.525007 CATTACGTAGTTTCAAGTGTTAATGTC 57.475 33.333 0.00 0.00 37.78 3.06
1673 1914 3.599343 GAGCATTCCCCATTTTCCAAAC 58.401 45.455 0.00 0.00 0.00 2.93
1691 1932 2.478894 TCGATTTTCTTTGGTCACGAGC 59.521 45.455 0.00 0.00 0.00 5.03
1696 1937 3.253188 CAGGCTTCGATTTTCTTTGGTCA 59.747 43.478 0.00 0.00 0.00 4.02
1711 1952 3.619038 CAGGACTCGAATTTACAGGCTTC 59.381 47.826 0.00 0.00 0.00 3.86
1715 1956 7.843490 TTATTTCAGGACTCGAATTTACAGG 57.157 36.000 0.00 0.00 0.00 4.00
1725 1966 7.540299 AGTCTAGTCTTTTATTTCAGGACTCG 58.460 38.462 0.00 0.00 38.13 4.18
1776 2017 5.772825 TGTGGAATTAAATCTGCCTATGC 57.227 39.130 0.00 0.00 38.26 3.14
1827 2075 4.500477 GCAATGTTCATAGCTTAAAAGGCG 59.500 41.667 0.00 0.00 34.52 5.52
1857 2105 3.887916 AGGGACAGAGGGAGTATCTAC 57.112 52.381 0.00 0.00 33.73 2.59
1865 2113 5.773680 CGTCTTATATTTAGGGACAGAGGGA 59.226 44.000 0.00 0.00 0.00 4.20
1866 2114 5.539193 ACGTCTTATATTTAGGGACAGAGGG 59.461 44.000 0.00 0.00 0.00 4.30
1867 2115 6.651975 ACGTCTTATATTTAGGGACAGAGG 57.348 41.667 0.00 0.00 0.00 3.69
1868 2116 8.943909 AAAACGTCTTATATTTAGGGACAGAG 57.056 34.615 0.00 0.00 0.00 3.35
1869 2117 9.158233 CAAAAACGTCTTATATTTAGGGACAGA 57.842 33.333 0.00 0.00 0.00 3.41
1872 2120 7.754625 TGCAAAAACGTCTTATATTTAGGGAC 58.245 34.615 0.00 0.00 0.00 4.46
1873 2121 7.608761 ACTGCAAAAACGTCTTATATTTAGGGA 59.391 33.333 0.00 0.00 0.00 4.20
1874 2122 7.758495 ACTGCAAAAACGTCTTATATTTAGGG 58.242 34.615 0.00 0.00 0.00 3.53
1875 2123 9.274065 GAACTGCAAAAACGTCTTATATTTAGG 57.726 33.333 0.00 0.00 0.00 2.69
1876 2124 9.820229 TGAACTGCAAAAACGTCTTATATTTAG 57.180 29.630 0.00 0.00 0.00 1.85
1878 2126 9.691362 ATTGAACTGCAAAAACGTCTTATATTT 57.309 25.926 0.00 0.00 40.48 1.40
1879 2127 9.691362 AATTGAACTGCAAAAACGTCTTATATT 57.309 25.926 0.00 0.00 40.48 1.28
1880 2128 9.341899 GAATTGAACTGCAAAAACGTCTTATAT 57.658 29.630 0.00 0.00 40.48 0.86
1881 2129 8.564574 AGAATTGAACTGCAAAAACGTCTTATA 58.435 29.630 0.00 0.00 40.48 0.98
1882 2130 7.425606 AGAATTGAACTGCAAAAACGTCTTAT 58.574 30.769 0.00 0.00 40.48 1.73
1883 2131 6.791303 AGAATTGAACTGCAAAAACGTCTTA 58.209 32.000 0.00 0.00 40.48 2.10
1884 2132 5.650543 AGAATTGAACTGCAAAAACGTCTT 58.349 33.333 0.00 0.00 40.48 3.01
1885 2133 5.248870 AGAATTGAACTGCAAAAACGTCT 57.751 34.783 0.00 0.00 40.48 4.18
1886 2134 5.949233 AAGAATTGAACTGCAAAAACGTC 57.051 34.783 0.00 0.00 40.48 4.34
1887 2135 9.691362 AATATAAGAATTGAACTGCAAAAACGT 57.309 25.926 0.00 0.00 40.48 3.99
1914 2162 9.624373 CACTATTAAGTACTACCTCTGTCCTTA 57.376 37.037 0.00 0.00 33.48 2.69
1915 2163 8.114743 ACACTATTAAGTACTACCTCTGTCCTT 58.885 37.037 0.00 0.00 33.48 3.36
1916 2164 7.641249 ACACTATTAAGTACTACCTCTGTCCT 58.359 38.462 0.00 0.00 33.48 3.85
1917 2165 7.878547 ACACTATTAAGTACTACCTCTGTCC 57.121 40.000 0.00 0.00 33.48 4.02
1918 2166 9.786105 GAAACACTATTAAGTACTACCTCTGTC 57.214 37.037 0.00 0.00 33.48 3.51
1919 2167 9.305555 TGAAACACTATTAAGTACTACCTCTGT 57.694 33.333 0.00 0.00 33.48 3.41
1940 2188 8.236586 TGACAAGCATAGTGTAATTCATGAAAC 58.763 33.333 13.09 7.78 0.00 2.78
1944 2192 9.016623 CAATTGACAAGCATAGTGTAATTCATG 57.983 33.333 0.00 0.00 0.00 3.07
1953 2201 6.774354 AAAAAGCAATTGACAAGCATAGTG 57.226 33.333 10.34 0.00 0.00 2.74
1978 2226 9.896645 AGGTATAACTAATCATGCATAATCAGG 57.103 33.333 0.00 0.00 0.00 3.86
2001 2249 4.339247 GCAGATTGGCACACATAAATAGGT 59.661 41.667 0.00 0.00 39.29 3.08
2003 2251 5.762825 AGCAGATTGGCACACATAAATAG 57.237 39.130 0.00 0.00 39.29 1.73
2036 2285 7.016361 ACTCGAGTCATGGTAAAAATTATGC 57.984 36.000 13.58 0.00 0.00 3.14
2079 2330 5.054477 AGCATACTTTTACACAACACGTCT 58.946 37.500 0.00 0.00 0.00 4.18
2082 2333 5.507077 ACAAGCATACTTTTACACAACACG 58.493 37.500 0.00 0.00 32.29 4.49
2083 2334 6.970043 TCAACAAGCATACTTTTACACAACAC 59.030 34.615 0.00 0.00 32.29 3.32
2087 2338 6.724263 CACTCAACAAGCATACTTTTACACA 58.276 36.000 0.00 0.00 32.29 3.72
2088 2339 5.625311 GCACTCAACAAGCATACTTTTACAC 59.375 40.000 0.00 0.00 32.29 2.90
2108 2361 0.038599 TGGCAGTCCATCAATGCACT 59.961 50.000 0.00 0.00 41.78 4.40
2109 2362 0.889994 TTGGCAGTCCATCAATGCAC 59.110 50.000 0.00 0.00 43.05 4.57
2116 2369 5.585390 CATCAGTTTATTTGGCAGTCCATC 58.415 41.667 0.00 0.00 43.05 3.51
2117 2370 4.142093 GCATCAGTTTATTTGGCAGTCCAT 60.142 41.667 0.00 0.00 43.05 3.41
2134 2388 4.117685 TGACGATCAGAAGATTGCATCAG 58.882 43.478 0.00 0.00 38.95 2.90
2168 2423 2.361757 TGTGCTGACAACCATCCTTTTG 59.638 45.455 0.00 0.00 0.00 2.44
2249 2504 3.358554 GGGAGAAAAACCCACCTCC 57.641 57.895 0.00 0.00 46.05 4.30
2258 2513 6.106673 CGAGCAAGATAGTAAGGGAGAAAAA 58.893 40.000 0.00 0.00 0.00 1.94
2314 2572 9.681062 TTCCTTCCAAGACCTAAATAAAGTATG 57.319 33.333 0.00 0.00 0.00 2.39
2434 2692 8.131731 GCATACTGGAGAAGGAAAAATACATTC 58.868 37.037 0.00 0.00 0.00 2.67
2452 2710 9.891828 TGCGAAAATATATTAAAAGCATACTGG 57.108 29.630 0.00 0.00 0.00 4.00
2485 2743 8.359642 TCATTATAGCCATTTTCAACAATAGGC 58.640 33.333 0.00 0.00 40.85 3.93
2570 2828 3.974719 TGCAAAGAACTTATGGGGCATA 58.025 40.909 0.00 0.00 0.00 3.14
2581 2839 6.899393 TTTGATGGAGTAATGCAAAGAACT 57.101 33.333 0.00 0.00 0.00 3.01
2609 2872 8.777413 TCAACAGTCAATCACTCAATTTAAGAG 58.223 33.333 0.00 0.00 39.04 2.85
2610 2873 8.675705 TCAACAGTCAATCACTCAATTTAAGA 57.324 30.769 0.00 0.00 30.26 2.10
2611 2874 7.536622 GCTCAACAGTCAATCACTCAATTTAAG 59.463 37.037 0.00 0.00 30.26 1.85
2612 2875 7.013178 TGCTCAACAGTCAATCACTCAATTTAA 59.987 33.333 0.00 0.00 30.26 1.52
2614 2877 5.300034 TGCTCAACAGTCAATCACTCAATTT 59.700 36.000 0.00 0.00 30.26 1.82
2617 2880 3.807553 TGCTCAACAGTCAATCACTCAA 58.192 40.909 0.00 0.00 30.26 3.02
2619 2882 4.035558 TGTTTGCTCAACAGTCAATCACTC 59.964 41.667 0.00 0.00 40.71 3.51
2620 2883 3.947196 TGTTTGCTCAACAGTCAATCACT 59.053 39.130 0.00 0.00 40.71 3.41
2669 2933 9.829507 CTCTTACATCCTTGTCATTCTAGAAAT 57.170 33.333 9.71 0.00 37.28 2.17
2766 3030 4.471386 AGTATGCTAACCTCATCAAGTGGT 59.529 41.667 0.00 0.00 45.71 4.16
2822 3086 8.786898 TGAGATTGTAACAATTCAGGAAAGAAG 58.213 33.333 0.00 0.00 0.00 2.85
2945 3209 3.631686 CCCAACAATGACAACAGACAAGA 59.368 43.478 0.00 0.00 0.00 3.02
2995 3259 5.387279 AGTGTCAAAAGTGTTGTAACGTTG 58.613 37.500 11.99 0.00 0.00 4.10
2998 3262 4.262045 GCAAGTGTCAAAAGTGTTGTAACG 59.738 41.667 0.00 0.00 0.00 3.18
2999 3263 5.399013 AGCAAGTGTCAAAAGTGTTGTAAC 58.601 37.500 0.00 0.00 0.00 2.50
3020 3284 5.185828 AGGGAACAAGAATGGAATTTGTAGC 59.814 40.000 0.00 0.00 36.07 3.58
3021 3285 6.209391 ACAGGGAACAAGAATGGAATTTGTAG 59.791 38.462 0.00 0.00 36.07 2.74
3027 3291 4.387026 TGACAGGGAACAAGAATGGAAT 57.613 40.909 0.00 0.00 0.00 3.01
3050 3315 6.628919 ACAACTAATAAGGTGCGTTCTTTT 57.371 33.333 0.00 0.00 44.94 2.27
3058 3323 8.296713 TCAGAATTTGAACAACTAATAAGGTGC 58.703 33.333 0.00 0.00 44.94 5.01
3240 3537 6.183359 GCATGAATAAAAACAACGAAATCGCT 60.183 34.615 0.00 0.00 44.43 4.93
3249 3546 7.290118 GTGGAATGTGCATGAATAAAAACAAC 58.710 34.615 0.00 0.00 0.00 3.32
3286 3583 3.134458 CTCCTGTCTTCAAGACCACAAC 58.866 50.000 15.20 0.00 44.44 3.32
3325 3727 3.440173 CGAAAGGGTTGAGTGTGCATATT 59.560 43.478 0.00 0.00 0.00 1.28
3338 3748 2.358737 CAGCTCCGCGAAAGGGTT 60.359 61.111 8.23 0.00 43.37 4.11
3355 3765 6.807789 AGAGTAACAAGTAATAGGCTAGTGC 58.192 40.000 4.46 3.00 38.76 4.40
3367 3778 3.245016 TGGGACGGAGAGAGTAACAAGTA 60.245 47.826 0.00 0.00 0.00 2.24
3368 3779 2.169330 GGGACGGAGAGAGTAACAAGT 58.831 52.381 0.00 0.00 0.00 3.16
3369 3780 2.168496 TGGGACGGAGAGAGTAACAAG 58.832 52.381 0.00 0.00 0.00 3.16
3371 3782 2.526888 ATGGGACGGAGAGAGTAACA 57.473 50.000 0.00 0.00 0.00 2.41
3372 3783 6.837471 ATATTATGGGACGGAGAGAGTAAC 57.163 41.667 0.00 0.00 0.00 2.50
3373 3784 8.388589 TCTTATATTATGGGACGGAGAGAGTAA 58.611 37.037 0.00 0.00 0.00 2.24
3374 3785 7.925622 TCTTATATTATGGGACGGAGAGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
3375 3786 6.791371 TCTTATATTATGGGACGGAGAGAGT 58.209 40.000 0.00 0.00 0.00 3.24
3376 3787 7.540299 GTTCTTATATTATGGGACGGAGAGAG 58.460 42.308 0.00 0.00 0.00 3.20
3377 3788 6.150641 CGTTCTTATATTATGGGACGGAGAGA 59.849 42.308 0.00 0.00 0.00 3.10
3378 3789 6.072064 ACGTTCTTATATTATGGGACGGAGAG 60.072 42.308 13.18 0.00 0.00 3.20
3379 3790 5.771666 ACGTTCTTATATTATGGGACGGAGA 59.228 40.000 13.18 0.00 0.00 3.71
3380 3791 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3381 3792 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3382 3793 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3383 3794 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3384 3795 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3385 3796 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3386 3797 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3395 3806 9.316730 ACTACATTAGTGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 39.77 2.10
3396 3807 8.205131 ACTACATTAGTGTCAAAAACGTTCTT 57.795 30.769 0.00 0.00 39.77 2.52
3397 3808 7.781548 ACTACATTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 39.77 3.01
3425 3836 9.504708 TCTGTCCCAAAATATAAGAACGTTTTA 57.495 29.630 0.46 3.93 0.00 1.52
3426 3837 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3427 3838 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
3428 3839 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
3429 3840 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
3430 3841 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
3431 3842 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3432 3843 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
3433 3844 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
3434 3845 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
3435 3846 7.136885 TCTACTCCCTCTGTCCCAAAATATAA 58.863 38.462 0.00 0.00 0.00 0.98
3436 3847 6.689561 TCTACTCCCTCTGTCCCAAAATATA 58.310 40.000 0.00 0.00 0.00 0.86
3437 3848 5.538877 TCTACTCCCTCTGTCCCAAAATAT 58.461 41.667 0.00 0.00 0.00 1.28
3438 3849 4.955335 TCTACTCCCTCTGTCCCAAAATA 58.045 43.478 0.00 0.00 0.00 1.40
3439 3850 3.803340 TCTACTCCCTCTGTCCCAAAAT 58.197 45.455 0.00 0.00 0.00 1.82
3440 3851 3.269592 TCTACTCCCTCTGTCCCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
3441 3852 3.269592 TTCTACTCCCTCTGTCCCAAA 57.730 47.619 0.00 0.00 0.00 3.28
3442 3853 3.269592 TTTCTACTCCCTCTGTCCCAA 57.730 47.619 0.00 0.00 0.00 4.12
3443 3854 3.173965 CTTTTCTACTCCCTCTGTCCCA 58.826 50.000 0.00 0.00 0.00 4.37
3444 3855 3.055747 CACTTTTCTACTCCCTCTGTCCC 60.056 52.174 0.00 0.00 0.00 4.46
3445 3856 3.055747 CCACTTTTCTACTCCCTCTGTCC 60.056 52.174 0.00 0.00 0.00 4.02
3446 3857 3.833070 TCCACTTTTCTACTCCCTCTGTC 59.167 47.826 0.00 0.00 0.00 3.51
3447 3858 3.835395 CTCCACTTTTCTACTCCCTCTGT 59.165 47.826 0.00 0.00 0.00 3.41
3448 3859 3.368948 GCTCCACTTTTCTACTCCCTCTG 60.369 52.174 0.00 0.00 0.00 3.35
3449 3860 2.835156 GCTCCACTTTTCTACTCCCTCT 59.165 50.000 0.00 0.00 0.00 3.69
3450 3861 2.567615 TGCTCCACTTTTCTACTCCCTC 59.432 50.000 0.00 0.00 0.00 4.30
3451 3862 2.569404 CTGCTCCACTTTTCTACTCCCT 59.431 50.000 0.00 0.00 0.00 4.20
3452 3863 2.567615 TCTGCTCCACTTTTCTACTCCC 59.432 50.000 0.00 0.00 0.00 4.30
3453 3864 3.963428 TCTGCTCCACTTTTCTACTCC 57.037 47.619 0.00 0.00 0.00 3.85
3454 3865 6.652900 AGAAAATCTGCTCCACTTTTCTACTC 59.347 38.462 7.21 0.00 42.87 2.59
3455 3866 6.538263 AGAAAATCTGCTCCACTTTTCTACT 58.462 36.000 7.21 0.00 42.87 2.57
3456 3867 6.809630 AGAAAATCTGCTCCACTTTTCTAC 57.190 37.500 7.21 0.00 42.87 2.59
3466 3877 6.916932 GCATCAGAATAAAGAAAATCTGCTCC 59.083 38.462 0.00 0.00 39.27 4.70
3490 3902 5.815740 TCCGATACCTGAAAATTAGAGTTGC 59.184 40.000 0.00 0.00 0.00 4.17
3539 3951 3.469008 TGTGACAAGTCCTGACGAATT 57.531 42.857 0.00 0.00 36.20 2.17
3598 4010 5.197451 TGACAAACAGATGGTTACAAAGGT 58.803 37.500 0.00 0.00 39.29 3.50
3600 4012 6.857964 GTGATGACAAACAGATGGTTACAAAG 59.142 38.462 0.00 0.00 39.29 2.77
3601 4013 6.545666 AGTGATGACAAACAGATGGTTACAAA 59.454 34.615 0.00 0.00 39.29 2.83
3608 4020 5.702670 AGTACAAGTGATGACAAACAGATGG 59.297 40.000 0.00 0.00 0.00 3.51
3620 4032 5.300752 AGGAACACTGAAGTACAAGTGATG 58.699 41.667 22.66 6.08 34.36 3.07
3634 4050 9.838339 ATTAGATTCCAGTATAAAGGAACACTG 57.162 33.333 8.81 0.00 45.91 3.66
3636 4052 9.832445 TGATTAGATTCCAGTATAAAGGAACAC 57.168 33.333 8.81 7.11 45.91 3.32
3644 4061 9.147732 TGAAGAGCTGATTAGATTCCAGTATAA 57.852 33.333 0.00 0.00 0.00 0.98
3650 4067 6.060136 CCATTGAAGAGCTGATTAGATTCCA 58.940 40.000 0.00 0.00 0.00 3.53
3655 4072 4.449131 CTGCCATTGAAGAGCTGATTAGA 58.551 43.478 0.00 0.00 0.00 2.10
3667 4084 2.380064 AACTCCAACCTGCCATTGAA 57.620 45.000 0.00 0.00 0.00 2.69
3693 4110 4.099573 CCTTTACGTATCTGGTCTCCACAT 59.900 45.833 0.00 0.00 0.00 3.21
3744 4161 3.181485 GCGGTTACTTCAGTAGCATCTCT 60.181 47.826 3.58 0.00 34.05 3.10
3747 4164 2.159085 AGGCGGTTACTTCAGTAGCATC 60.159 50.000 3.58 0.00 34.05 3.91
3761 4178 3.983044 AAGAGATACAGAAAGGCGGTT 57.017 42.857 0.00 0.00 0.00 4.44
3773 4190 9.129209 GGAAGCAATGTTTAACAAAAGAGATAC 57.871 33.333 0.66 0.00 0.00 2.24
3774 4191 8.855110 TGGAAGCAATGTTTAACAAAAGAGATA 58.145 29.630 0.66 0.00 0.00 1.98
3775 4192 7.725251 TGGAAGCAATGTTTAACAAAAGAGAT 58.275 30.769 0.66 0.00 0.00 2.75
3776 4193 7.106439 TGGAAGCAATGTTTAACAAAAGAGA 57.894 32.000 0.66 0.00 0.00 3.10
3777 4194 7.398834 CTGGAAGCAATGTTTAACAAAAGAG 57.601 36.000 0.66 0.00 0.00 2.85
3799 4217 2.104967 ACATCAATCCACCAATGGCTG 58.895 47.619 0.00 0.00 46.80 4.85
3801 4219 3.290710 AGTACATCAATCCACCAATGGC 58.709 45.455 0.00 0.00 46.80 4.40
3808 4226 6.458232 ACTGACTAGAGTACATCAATCCAC 57.542 41.667 0.00 0.00 0.00 4.02
3830 4249 4.608445 CGACGACCAAAACTGAGATCAAAC 60.608 45.833 0.00 0.00 0.00 2.93
3834 4253 2.662156 GACGACGACCAAAACTGAGATC 59.338 50.000 0.00 0.00 0.00 2.75
3836 4255 1.406180 TGACGACGACCAAAACTGAGA 59.594 47.619 0.00 0.00 0.00 3.27
3838 4257 2.519377 ATGACGACGACCAAAACTGA 57.481 45.000 0.00 0.00 0.00 3.41
3856 4276 9.905713 TCTGCTAGGTTGATAGATTACAAAAAT 57.094 29.630 0.00 0.00 0.00 1.82
3869 4289 0.250234 TGCGCTTCTGCTAGGTTGAT 59.750 50.000 9.73 0.00 36.97 2.57
3874 4301 1.416813 CGTCTTGCGCTTCTGCTAGG 61.417 60.000 9.73 0.00 38.11 3.02
3875 4302 1.416813 CCGTCTTGCGCTTCTGCTAG 61.417 60.000 9.73 0.00 38.76 3.42
3876 4303 1.446099 CCGTCTTGCGCTTCTGCTA 60.446 57.895 9.73 0.00 39.71 3.49
3877 4304 2.740055 CCGTCTTGCGCTTCTGCT 60.740 61.111 9.73 0.00 39.71 4.24
3878 4305 3.793144 CCCGTCTTGCGCTTCTGC 61.793 66.667 9.73 0.00 39.71 4.26
3879 4306 1.507141 AAACCCGTCTTGCGCTTCTG 61.507 55.000 9.73 0.00 39.71 3.02
3880 4307 0.818040 AAAACCCGTCTTGCGCTTCT 60.818 50.000 9.73 0.00 39.71 2.85
3885 4312 1.504359 TGACTAAAACCCGTCTTGCG 58.496 50.000 0.00 0.00 40.95 4.85
3887 4314 4.315803 ACAGATGACTAAAACCCGTCTTG 58.684 43.478 0.00 0.00 0.00 3.02
3918 4345 3.722147 TCTCAACTTCTGACTGCACTTC 58.278 45.455 0.00 0.00 0.00 3.01
3936 4363 4.575236 ACGAGTGAAAAACCTCCTTTTCTC 59.425 41.667 9.49 6.58 43.01 2.87
3948 4375 4.039032 GCAAAATCCGAACGAGTGAAAAA 58.961 39.130 0.00 0.00 0.00 1.94
3957 4384 2.081462 ACCTAAGGCAAAATCCGAACG 58.919 47.619 0.00 0.00 0.00 3.95
3987 4414 3.434637 ACGACAAACTTGCAATTGACAC 58.565 40.909 17.47 8.67 0.00 3.67
3988 4415 3.773860 ACGACAAACTTGCAATTGACA 57.226 38.095 17.47 3.95 0.00 3.58
3989 4416 4.326009 ACAAACGACAAACTTGCAATTGAC 59.674 37.500 17.47 11.27 0.00 3.18
3990 4417 4.489810 ACAAACGACAAACTTGCAATTGA 58.510 34.783 17.47 0.00 0.00 2.57
3991 4418 4.562394 AGACAAACGACAAACTTGCAATTG 59.438 37.500 10.53 10.53 0.00 2.32
3992 4419 4.562394 CAGACAAACGACAAACTTGCAATT 59.438 37.500 0.00 0.00 0.00 2.32
3993 4420 4.104776 CAGACAAACGACAAACTTGCAAT 58.895 39.130 0.00 0.00 0.00 3.56
4013 4440 0.962356 GCTCACCCCATTGTCCACAG 60.962 60.000 0.00 0.00 0.00 3.66
4015 4442 2.040544 CGCTCACCCCATTGTCCAC 61.041 63.158 0.00 0.00 0.00 4.02
4017 4444 2.438434 CCGCTCACCCCATTGTCC 60.438 66.667 0.00 0.00 0.00 4.02
4018 4445 2.438434 CCCGCTCACCCCATTGTC 60.438 66.667 0.00 0.00 0.00 3.18
4019 4446 2.840753 AACCCGCTCACCCCATTGT 61.841 57.895 0.00 0.00 0.00 2.71
4020 4447 2.035626 AACCCGCTCACCCCATTG 59.964 61.111 0.00 0.00 0.00 2.82
4021 4448 2.035626 CAACCCGCTCACCCCATT 59.964 61.111 0.00 0.00 0.00 3.16
4022 4449 4.740822 GCAACCCGCTCACCCCAT 62.741 66.667 0.00 0.00 37.77 4.00
4024 4451 4.740822 ATGCAACCCGCTCACCCC 62.741 66.667 0.00 0.00 43.06 4.95
4025 4452 2.676471 AATGCAACCCGCTCACCC 60.676 61.111 0.00 0.00 43.06 4.61
4026 4453 1.926511 CTGAATGCAACCCGCTCACC 61.927 60.000 0.00 0.00 43.06 4.02
4027 4454 1.503542 CTGAATGCAACCCGCTCAC 59.496 57.895 0.00 0.00 43.06 3.51
4028 4455 1.675310 CCTGAATGCAACCCGCTCA 60.675 57.895 0.00 0.00 43.06 4.26
4029 4456 3.056313 GCCTGAATGCAACCCGCTC 62.056 63.158 0.00 0.00 43.06 5.03
4030 4457 3.064324 GCCTGAATGCAACCCGCT 61.064 61.111 0.00 0.00 43.06 5.52
4031 4458 2.639327 AAGCCTGAATGCAACCCGC 61.639 57.895 0.00 0.00 42.89 6.13
4032 4459 1.213537 CAAGCCTGAATGCAACCCG 59.786 57.895 0.00 0.00 0.00 5.28
4033 4460 0.968405 TTCAAGCCTGAATGCAACCC 59.032 50.000 0.00 0.00 36.62 4.11
4034 4461 1.340889 TGTTCAAGCCTGAATGCAACC 59.659 47.619 0.13 0.00 43.39 3.77
4035 4462 2.798976 TGTTCAAGCCTGAATGCAAC 57.201 45.000 0.13 0.00 43.39 4.17
4036 4463 4.309099 GAAATGTTCAAGCCTGAATGCAA 58.691 39.130 0.13 0.00 43.39 4.08
4037 4464 3.612241 CGAAATGTTCAAGCCTGAATGCA 60.612 43.478 0.13 0.00 43.39 3.96
4038 4465 2.919229 CGAAATGTTCAAGCCTGAATGC 59.081 45.455 0.13 0.00 43.39 3.56
4039 4466 4.409570 CTCGAAATGTTCAAGCCTGAATG 58.590 43.478 0.13 0.00 43.39 2.67
4040 4467 3.441572 CCTCGAAATGTTCAAGCCTGAAT 59.558 43.478 0.13 0.00 43.39 2.57
4041 4468 2.813754 CCTCGAAATGTTCAAGCCTGAA 59.186 45.455 0.00 0.00 39.30 3.02
4042 4469 2.224523 ACCTCGAAATGTTCAAGCCTGA 60.225 45.455 0.00 0.00 0.00 3.86
4043 4470 2.095567 CACCTCGAAATGTTCAAGCCTG 60.096 50.000 0.00 0.00 0.00 4.85
4044 4471 2.154462 CACCTCGAAATGTTCAAGCCT 58.846 47.619 0.00 0.00 0.00 4.58
4045 4472 1.401539 GCACCTCGAAATGTTCAAGCC 60.402 52.381 0.00 0.00 0.00 4.35
4046 4473 1.725931 CGCACCTCGAAATGTTCAAGC 60.726 52.381 0.00 0.00 41.67 4.01
4047 4474 1.798223 TCGCACCTCGAAATGTTCAAG 59.202 47.619 0.00 0.00 45.36 3.02
4048 4475 1.872388 TCGCACCTCGAAATGTTCAA 58.128 45.000 0.00 0.00 45.36 2.69
4049 4476 3.597550 TCGCACCTCGAAATGTTCA 57.402 47.368 0.00 0.00 45.36 3.18
4062 4489 1.598130 AGCAGACCAGGTTTCGCAC 60.598 57.895 10.51 0.00 0.00 5.34
4063 4490 1.597854 CAGCAGACCAGGTTTCGCA 60.598 57.895 10.51 0.00 0.00 5.10
4064 4491 0.320421 TACAGCAGACCAGGTTTCGC 60.320 55.000 0.00 0.00 0.00 4.70
4065 4492 1.798813 GTTACAGCAGACCAGGTTTCG 59.201 52.381 0.00 0.00 0.00 3.46
4070 4497 3.244422 TGGTAAAGTTACAGCAGACCAGG 60.244 47.826 3.75 0.00 35.37 4.45
4092 4519 2.073816 CGTTATGTCAAGGGCTTTCGT 58.926 47.619 0.00 0.00 0.00 3.85
4094 4521 2.678336 CCTCGTTATGTCAAGGGCTTTC 59.322 50.000 0.00 0.00 0.00 2.62
4103 4530 1.831106 ACAGGATGCCTCGTTATGTCA 59.169 47.619 0.00 0.00 42.53 3.58
4106 4533 1.586422 CCACAGGATGCCTCGTTATG 58.414 55.000 0.00 0.00 42.53 1.90
4131 4558 7.165485 GGTACACATGTTGCCCTTCATATATA 58.835 38.462 0.00 0.00 0.00 0.86
4132 4559 6.003950 GGTACACATGTTGCCCTTCATATAT 58.996 40.000 0.00 0.00 0.00 0.86
4148 4575 7.226325 CCAAACATTTTGTTGAATGGTACACAT 59.774 33.333 0.00 0.00 40.23 3.21
4159 4586 6.297694 GCATTTAGCCAAACATTTTGTTGA 57.702 33.333 0.00 0.00 37.76 3.18
4209 4637 2.343426 GGGGCAAGGTTACAGCAGC 61.343 63.158 0.00 0.00 0.00 5.25
4211 4639 2.033448 CGGGGCAAGGTTACAGCA 59.967 61.111 0.00 0.00 0.00 4.41
4223 4651 0.395173 TTATTTCAGGGCTTCGGGGC 60.395 55.000 0.00 0.00 40.05 5.80
4227 4657 3.181496 GCCTCTTTTATTTCAGGGCTTCG 60.181 47.826 0.00 0.00 35.73 3.79
4228 4658 3.181496 CGCCTCTTTTATTTCAGGGCTTC 60.181 47.826 0.00 0.00 36.37 3.86
4241 4671 1.398692 TTTCACAAGGCGCCTCTTTT 58.601 45.000 32.93 11.91 0.00 2.27
4295 4737 9.733556 TCACTGAAATAGTAATGGAAGCTTTTA 57.266 29.630 0.00 0.00 37.60 1.52
4304 4746 7.965107 GCTTCAAACTCACTGAAATAGTAATGG 59.035 37.037 0.00 0.00 37.60 3.16
4307 4749 6.147164 CCGCTTCAAACTCACTGAAATAGTAA 59.853 38.462 0.00 0.00 37.60 2.24
4311 4780 4.385825 ACCGCTTCAAACTCACTGAAATA 58.614 39.130 0.00 0.00 32.57 1.40
4322 4791 5.545658 TCATCATCTAAACCGCTTCAAAC 57.454 39.130 0.00 0.00 0.00 2.93
4403 5525 1.064832 GCTTCCAATTCTCCTCCTGCT 60.065 52.381 0.00 0.00 0.00 4.24
4420 5542 3.259123 GTGGGATCCAACTTTGATTGCTT 59.741 43.478 15.23 0.00 34.18 3.91
4431 5553 2.743183 CGAGGAAGATGTGGGATCCAAC 60.743 54.545 12.89 12.89 34.18 3.77
4432 5554 1.486310 CGAGGAAGATGTGGGATCCAA 59.514 52.381 15.23 0.00 34.18 3.53
4448 5571 0.891373 TCTGGAAGCTCTGAACGAGG 59.109 55.000 0.00 0.00 40.25 4.63
4449 5572 1.543802 AGTCTGGAAGCTCTGAACGAG 59.456 52.381 0.00 0.00 42.88 4.18
4450 5573 1.621992 AGTCTGGAAGCTCTGAACGA 58.378 50.000 0.00 0.00 0.00 3.85
4451 5574 2.333014 GAAGTCTGGAAGCTCTGAACG 58.667 52.381 0.00 0.00 0.00 3.95
4452 5575 2.037772 TGGAAGTCTGGAAGCTCTGAAC 59.962 50.000 0.00 0.00 0.00 3.18
4453 5576 2.301296 CTGGAAGTCTGGAAGCTCTGAA 59.699 50.000 0.00 0.00 0.00 3.02
4454 5577 1.898472 CTGGAAGTCTGGAAGCTCTGA 59.102 52.381 0.00 0.00 0.00 3.27
4455 5578 2.383368 CTGGAAGTCTGGAAGCTCTG 57.617 55.000 0.00 0.00 0.00 3.35
4480 5603 1.541588 GACAGTGAAAGTTCCCATGGC 59.458 52.381 6.09 0.00 0.00 4.40
4487 5610 6.363577 TGAGTTTGATGACAGTGAAAGTTC 57.636 37.500 0.00 0.00 0.00 3.01
4499 5622 4.579753 TGATGTGTTTGCTGAGTTTGATGA 59.420 37.500 0.00 0.00 0.00 2.92
4523 5646 8.356657 TCACACACAAGAAAGAAAGAAAGAAAA 58.643 29.630 0.00 0.00 0.00 2.29
4526 5649 7.447374 TTCACACACAAGAAAGAAAGAAAGA 57.553 32.000 0.00 0.00 0.00 2.52
4527 5650 8.427774 GTTTTCACACACAAGAAAGAAAGAAAG 58.572 33.333 0.00 0.00 35.41 2.62
4528 5651 7.923344 TGTTTTCACACACAAGAAAGAAAGAAA 59.077 29.630 0.00 0.00 35.41 2.52
4529 5652 7.429633 TGTTTTCACACACAAGAAAGAAAGAA 58.570 30.769 0.00 0.00 35.41 2.52
4530 5653 6.976088 TGTTTTCACACACAAGAAAGAAAGA 58.024 32.000 0.00 0.00 35.41 2.52
4531 5654 7.636259 TTGTTTTCACACACAAGAAAGAAAG 57.364 32.000 0.00 0.00 35.41 2.62
4558 5681 6.869913 ACTGCAATTGATTTTCGAATTGATGT 59.130 30.769 10.34 5.63 40.53 3.06
4570 5693 3.249080 GCAAACTGCACTGCAATTGATTT 59.751 39.130 23.66 10.41 44.26 2.17
4616 5824 2.302733 ACCAAAATTTCCTCATGTGCCC 59.697 45.455 0.00 0.00 0.00 5.36
4634 5842 2.042464 TGGTTAAATTGCCTTGCACCA 58.958 42.857 0.00 0.00 38.71 4.17
4670 5878 5.751243 TCAGTGAAAGTTTTTAGCTCCAC 57.249 39.130 0.00 0.00 0.00 4.02
4741 5949 1.610624 CCAGTACGGTGGTTGCTTCAT 60.611 52.381 0.00 0.00 32.32 2.57
4781 5989 5.741982 ACATTTTTCTACGTTTGCACTGTTC 59.258 36.000 0.00 0.00 0.00 3.18
4793 6003 8.482429 AGTTTGTAGTCGTAACATTTTTCTACG 58.518 33.333 0.00 0.00 39.75 3.51
4861 6071 6.521151 TGCATGAAATTTTTGTTTGGGTTT 57.479 29.167 0.00 0.00 0.00 3.27
4887 6098 1.068541 GTTCGGTTCAAGGGTTGATGC 60.069 52.381 0.00 0.00 39.84 3.91
4963 6174 1.244019 GGGCATGGCGTGAAGAAGTT 61.244 55.000 11.71 0.00 0.00 2.66
4964 6175 1.675641 GGGCATGGCGTGAAGAAGT 60.676 57.895 11.71 0.00 0.00 3.01
5211 6422 6.475076 CGGAGTCTGAAGATGAATTCTACAAG 59.525 42.308 7.05 0.00 33.05 3.16
5253 6464 3.194005 ACACGTGAAGACAACAAGGAT 57.806 42.857 25.01 0.00 0.00 3.24
5302 6513 4.083961 TGAAAGACGTCAAAAACACGAACA 60.084 37.500 19.50 0.00 39.75 3.18
5314 6525 3.744238 TGAGATTGGTGAAAGACGTCA 57.256 42.857 19.50 0.00 0.00 4.35
5394 6605 8.700439 TGTAGCTATTCCTAACCTTTGTTTTT 57.300 30.769 0.00 0.00 35.87 1.94
5395 6606 7.094334 GCTGTAGCTATTCCTAACCTTTGTTTT 60.094 37.037 0.00 0.00 38.21 2.43
5396 6607 6.374613 GCTGTAGCTATTCCTAACCTTTGTTT 59.625 38.462 0.00 0.00 38.21 2.83
5399 6610 4.816925 GGCTGTAGCTATTCCTAACCTTTG 59.183 45.833 0.00 0.00 41.70 2.77
5423 6634 8.974060 TCTATGTTCCTTCCCATTGTTATAAC 57.026 34.615 8.75 8.75 0.00 1.89
5433 6644 2.569853 TCGCTTTCTATGTTCCTTCCCA 59.430 45.455 0.00 0.00 0.00 4.37
5434 6645 3.261981 TCGCTTTCTATGTTCCTTCCC 57.738 47.619 0.00 0.00 0.00 3.97
5435 6646 5.692654 GTCTATCGCTTTCTATGTTCCTTCC 59.307 44.000 0.00 0.00 0.00 3.46
5436 6647 6.273825 TGTCTATCGCTTTCTATGTTCCTTC 58.726 40.000 0.00 0.00 0.00 3.46
5437 6648 6.222038 TGTCTATCGCTTTCTATGTTCCTT 57.778 37.500 0.00 0.00 0.00 3.36
5439 6650 6.510317 GCTTTGTCTATCGCTTTCTATGTTCC 60.510 42.308 0.00 0.00 0.00 3.62
5445 6678 3.857665 CGTGCTTTGTCTATCGCTTTCTA 59.142 43.478 0.00 0.00 0.00 2.10
5451 6684 1.909376 TCTCGTGCTTTGTCTATCGC 58.091 50.000 0.00 0.00 0.00 4.58
5467 6700 7.396540 AGATCAACCCATTAAACATGTTCTC 57.603 36.000 12.39 0.00 0.00 2.87
5481 6714 3.719871 TCTACCAAGCTAGATCAACCCA 58.280 45.455 0.00 0.00 0.00 4.51
5497 6730 7.559590 AATTGTTGACTATTGCTCATCTACC 57.440 36.000 0.00 0.00 0.00 3.18
5563 6796 1.601166 ACGCAAACCTTGTAACCCTC 58.399 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.