Multiple sequence alignment - TraesCS5B01G403100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G403100 chr5B 100.000 3959 0 0 1 3959 580072175 580076133 0.000000e+00 7312.0
1 TraesCS5B01G403100 chr5B 92.254 1007 76 1 1070 2076 579590938 579591942 0.000000e+00 1426.0
2 TraesCS5B01G403100 chr5B 92.400 1000 76 0 1070 2069 579807424 579808423 0.000000e+00 1426.0
3 TraesCS5B01G403100 chr5B 89.568 1064 69 23 2154 3207 579809373 579810404 0.000000e+00 1312.0
4 TraesCS5B01G403100 chr5B 95.138 761 26 1 2200 2960 579593586 579594335 0.000000e+00 1190.0
5 TraesCS5B01G403100 chr5B 87.056 958 105 10 1064 2010 579520130 579521079 0.000000e+00 1064.0
6 TraesCS5B01G403100 chr5B 84.628 618 95 0 2342 2959 579521509 579522126 2.020000e-172 616.0
7 TraesCS5B01G403100 chr5B 100.000 32 0 0 920 951 579590777 579590808 4.270000e-05 60.2
8 TraesCS5B01G403100 chr5B 96.875 32 1 0 920 951 579807263 579807294 2.000000e-03 54.7
9 TraesCS5B01G403100 chr5A 94.122 1344 62 11 678 2010 592197830 592199167 0.000000e+00 2028.0
10 TraesCS5B01G403100 chr5A 91.067 1153 74 15 2187 3334 592124310 592125438 0.000000e+00 1531.0
11 TraesCS5B01G403100 chr5A 91.519 1014 74 4 1062 2069 592122406 592123413 0.000000e+00 1386.0
12 TraesCS5B01G403100 chr5A 93.897 852 39 6 2268 3115 592199184 592200026 0.000000e+00 1273.0
13 TraesCS5B01G403100 chr5A 87.049 942 103 8 1071 2010 592034051 592034975 0.000000e+00 1046.0
14 TraesCS5B01G403100 chr5A 88.031 518 57 5 1 516 678590473 678590987 3.380000e-170 608.0
15 TraesCS5B01G403100 chr5A 85.324 293 30 9 3148 3436 592201689 592201972 1.390000e-74 291.0
16 TraesCS5B01G403100 chr5A 92.453 53 3 1 3905 3957 592126222 592126273 1.530000e-09 75.0
17 TraesCS5B01G403100 chr5A 100.000 32 0 0 920 951 592122199 592122230 4.270000e-05 60.2
18 TraesCS5B01G403100 chr5D 93.525 1359 64 10 670 2010 472626426 472627778 0.000000e+00 2001.0
19 TraesCS5B01G403100 chr5D 91.738 1174 62 16 2268 3436 472627795 472628938 0.000000e+00 1598.0
20 TraesCS5B01G403100 chr5D 92.604 1014 69 1 1062 2069 472568521 472569534 0.000000e+00 1452.0
21 TraesCS5B01G403100 chr5D 92.173 971 50 13 2154 3117 472570372 472571323 0.000000e+00 1349.0
22 TraesCS5B01G403100 chr5D 87.460 949 107 3 1071 2013 472520403 472521345 0.000000e+00 1083.0
23 TraesCS5B01G403100 chr5D 88.372 516 59 1 1 516 409884973 409884459 1.560000e-173 619.0
24 TraesCS5B01G403100 chr5D 88.584 219 23 2 3440 3657 472628981 472629198 8.440000e-67 265.0
25 TraesCS5B01G403100 chr5D 93.617 94 2 1 3864 3953 472629283 472629376 1.920000e-28 137.0
26 TraesCS5B01G403100 chr3D 88.632 519 54 4 1 516 128424845 128424329 9.340000e-176 627.0
27 TraesCS5B01G403100 chr3D 88.650 511 53 3 1 511 315486787 315487292 5.620000e-173 617.0
28 TraesCS5B01G403100 chr3D 88.008 517 57 5 1 516 573857201 573856689 1.220000e-169 606.0
29 TraesCS5B01G403100 chr3D 87.838 518 58 5 1 516 252848988 252848474 1.570000e-168 603.0
30 TraesCS5B01G403100 chr3D 81.818 165 27 3 3701 3862 419520644 419520808 6.900000e-28 135.0
31 TraesCS5B01G403100 chr7D 88.178 516 59 2 2 516 251308522 251309036 7.270000e-172 614.0
32 TraesCS5B01G403100 chr7D 88.201 517 58 3 1 516 571494733 571495247 7.270000e-172 614.0
33 TraesCS5B01G403100 chr7D 87.573 515 64 0 2 516 412397695 412397181 7.320000e-167 597.0
34 TraesCS5B01G403100 chr4A 89.333 150 13 3 3701 3847 213025418 213025567 6.760000e-43 185.0
35 TraesCS5B01G403100 chr4A 86.577 149 17 3 3700 3845 613269479 613269627 1.140000e-35 161.0
36 TraesCS5B01G403100 chr4D 84.906 159 20 4 3701 3856 416761696 416761853 1.470000e-34 158.0
37 TraesCS5B01G403100 chr3B 84.242 165 20 5 3700 3859 30204315 30204152 5.300000e-34 156.0
38 TraesCS5B01G403100 chr3B 83.030 165 23 5 3699 3860 807119349 807119511 1.150000e-30 145.0
39 TraesCS5B01G403100 chr4B 87.313 134 16 1 3700 3832 10946595 10946462 6.850000e-33 152.0
40 TraesCS5B01G403100 chr7B 83.230 161 24 3 3699 3856 58270783 58270943 1.150000e-30 145.0
41 TraesCS5B01G403100 chr7B 81.765 170 22 8 3701 3863 364350992 364351159 2.480000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G403100 chr5B 580072175 580076133 3958 False 7312.000000 7312 100.000000 1 3959 1 chr5B.!!$F1 3958
1 TraesCS5B01G403100 chr5B 579807263 579810404 3141 False 930.900000 1426 92.947667 920 3207 3 chr5B.!!$F4 2287
2 TraesCS5B01G403100 chr5B 579590777 579594335 3558 False 892.066667 1426 95.797333 920 2960 3 chr5B.!!$F3 2040
3 TraesCS5B01G403100 chr5B 579520130 579522126 1996 False 840.000000 1064 85.842000 1064 2959 2 chr5B.!!$F2 1895
4 TraesCS5B01G403100 chr5A 592197830 592201972 4142 False 1197.333333 2028 91.114333 678 3436 3 chr5A.!!$F4 2758
5 TraesCS5B01G403100 chr5A 592034051 592034975 924 False 1046.000000 1046 87.049000 1071 2010 1 chr5A.!!$F1 939
6 TraesCS5B01G403100 chr5A 592122199 592126273 4074 False 763.050000 1531 93.759750 920 3957 4 chr5A.!!$F3 3037
7 TraesCS5B01G403100 chr5A 678590473 678590987 514 False 608.000000 608 88.031000 1 516 1 chr5A.!!$F2 515
8 TraesCS5B01G403100 chr5D 472568521 472571323 2802 False 1400.500000 1452 92.388500 1062 3117 2 chr5D.!!$F2 2055
9 TraesCS5B01G403100 chr5D 472520403 472521345 942 False 1083.000000 1083 87.460000 1071 2013 1 chr5D.!!$F1 942
10 TraesCS5B01G403100 chr5D 472626426 472629376 2950 False 1000.250000 2001 91.866000 670 3953 4 chr5D.!!$F3 3283
11 TraesCS5B01G403100 chr5D 409884459 409884973 514 True 619.000000 619 88.372000 1 516 1 chr5D.!!$R1 515
12 TraesCS5B01G403100 chr3D 128424329 128424845 516 True 627.000000 627 88.632000 1 516 1 chr3D.!!$R1 515
13 TraesCS5B01G403100 chr3D 315486787 315487292 505 False 617.000000 617 88.650000 1 511 1 chr3D.!!$F1 510
14 TraesCS5B01G403100 chr3D 573856689 573857201 512 True 606.000000 606 88.008000 1 516 1 chr3D.!!$R3 515
15 TraesCS5B01G403100 chr3D 252848474 252848988 514 True 603.000000 603 87.838000 1 516 1 chr3D.!!$R2 515
16 TraesCS5B01G403100 chr7D 251308522 251309036 514 False 614.000000 614 88.178000 2 516 1 chr7D.!!$F1 514
17 TraesCS5B01G403100 chr7D 571494733 571495247 514 False 614.000000 614 88.201000 1 516 1 chr7D.!!$F2 515
18 TraesCS5B01G403100 chr7D 412397181 412397695 514 True 597.000000 597 87.573000 2 516 1 chr7D.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 576 0.109723 CCTTGGTCCGGTTTCTTCCA 59.890 55.0 0.0 0.0 0.00 3.53 F
569 578 0.179012 TTGGTCCGGTTTCTTCCACC 60.179 55.0 0.0 0.0 0.00 4.61 F
572 581 0.321387 GTCCGGTTTCTTCCACCCTC 60.321 60.0 0.0 0.0 0.00 4.30 F
574 583 0.321653 CCGGTTTCTTCCACCCTCTG 60.322 60.0 0.0 0.0 0.00 3.35 F
575 584 0.396811 CGGTTTCTTCCACCCTCTGT 59.603 55.0 0.0 0.0 0.00 3.41 F
1029 1101 0.737804 GTGCCACACAACACACATCA 59.262 50.0 0.0 0.0 36.77 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2832 1.627329 TGGAGTCTTGAGAATGCAGCT 59.373 47.619 0.0 0.00 35.66 4.24 R
2111 2833 2.105006 TGGAGTCTTGAGAATGCAGC 57.895 50.000 0.0 0.00 35.66 5.25 R
2252 5128 2.549754 CACCGAGAAAATGAGTGCAGTT 59.450 45.455 0.0 0.00 33.05 3.16 R
2790 5666 2.203195 GCCAGCACCATGCCGATA 60.203 61.111 0.0 0.00 46.52 2.92 R
2947 5823 3.243839 GGATTGTCAGATCAGAGGCTCTC 60.244 52.174 15.6 3.86 0.00 3.20 R
3040 5920 0.394192 TGACTCTGCTCACACAAGGG 59.606 55.000 0.0 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.009210 CCTTGTTAAACTTTCCGATGAACCA 59.991 40.000 0.00 0.00 0.00 3.67
84 85 4.073293 ACAGATGACGTTTGAGAAACCT 57.927 40.909 0.00 0.00 38.14 3.50
149 150 8.328758 TCATGGTCTAAGGAACTAAATCACATT 58.671 33.333 0.00 0.00 38.49 2.71
150 151 8.616076 CATGGTCTAAGGAACTAAATCACATTC 58.384 37.037 0.00 0.00 38.49 2.67
175 176 9.653287 TCTAACTCTCTGTGTTATAACAATTGG 57.347 33.333 19.63 10.72 41.21 3.16
235 237 6.260936 AGTTTGGGTCGATTCAATATGATCAC 59.739 38.462 0.00 0.00 0.00 3.06
308 310 3.684788 ACGACATTCAAAGATCCGGAAAG 59.315 43.478 9.01 0.00 0.00 2.62
332 335 5.180117 GCATGATCACTAACAACACTTGAGT 59.820 40.000 0.00 0.00 0.00 3.41
354 357 7.670140 TGAGTTGGTCTTAGAGACAAGAATAGA 59.330 37.037 9.99 0.00 46.79 1.98
395 398 8.301720 GTTTATCATTCCACACATGCATATGAT 58.698 33.333 12.92 16.29 37.73 2.45
400 403 7.492994 TCATTCCACACATGCATATGATTTTTG 59.507 33.333 12.92 0.00 37.73 2.44
417 420 6.812656 TGATTTTTGCACTGAATCGCATATTT 59.187 30.769 9.85 0.00 38.10 1.40
516 525 4.141482 TGCCTCTAGGACATATTTCCAACC 60.141 45.833 10.52 0.00 38.25 3.77
517 526 4.632153 CCTCTAGGACATATTTCCAACCG 58.368 47.826 10.52 0.00 38.25 4.44
518 527 4.101119 CCTCTAGGACATATTTCCAACCGT 59.899 45.833 10.52 0.00 38.25 4.83
519 528 5.018539 TCTAGGACATATTTCCAACCGTG 57.981 43.478 10.52 0.00 38.25 4.94
520 529 3.992943 AGGACATATTTCCAACCGTGA 57.007 42.857 10.52 0.00 38.25 4.35
521 530 3.606687 AGGACATATTTCCAACCGTGAC 58.393 45.455 10.52 0.00 38.25 3.67
522 531 3.263425 AGGACATATTTCCAACCGTGACT 59.737 43.478 10.52 0.00 38.25 3.41
523 532 4.007659 GGACATATTTCCAACCGTGACTT 58.992 43.478 2.86 0.00 35.49 3.01
524 533 4.094442 GGACATATTTCCAACCGTGACTTC 59.906 45.833 2.86 0.00 35.49 3.01
525 534 3.682858 ACATATTTCCAACCGTGACTTCG 59.317 43.478 0.00 0.00 0.00 3.79
526 535 2.536761 ATTTCCAACCGTGACTTCGA 57.463 45.000 0.00 0.00 0.00 3.71
527 536 1.574134 TTTCCAACCGTGACTTCGAC 58.426 50.000 0.00 0.00 0.00 4.20
528 537 0.460722 TTCCAACCGTGACTTCGACA 59.539 50.000 0.00 0.00 0.00 4.35
529 538 0.677288 TCCAACCGTGACTTCGACAT 59.323 50.000 0.00 0.00 0.00 3.06
530 539 1.068474 CCAACCGTGACTTCGACATC 58.932 55.000 0.00 0.00 0.00 3.06
531 540 1.336887 CCAACCGTGACTTCGACATCT 60.337 52.381 0.00 0.00 0.00 2.90
532 541 2.404215 CAACCGTGACTTCGACATCTT 58.596 47.619 0.00 0.00 0.00 2.40
533 542 2.349297 ACCGTGACTTCGACATCTTC 57.651 50.000 0.00 0.00 0.00 2.87
534 543 1.887198 ACCGTGACTTCGACATCTTCT 59.113 47.619 0.00 0.00 0.00 2.85
535 544 3.079578 ACCGTGACTTCGACATCTTCTA 58.920 45.455 0.00 0.00 0.00 2.10
536 545 3.695060 ACCGTGACTTCGACATCTTCTAT 59.305 43.478 0.00 0.00 0.00 1.98
537 546 4.038361 CCGTGACTTCGACATCTTCTATG 58.962 47.826 0.00 0.00 0.00 2.23
538 547 4.438880 CCGTGACTTCGACATCTTCTATGT 60.439 45.833 0.00 0.00 34.52 2.29
539 548 5.096169 CGTGACTTCGACATCTTCTATGTT 58.904 41.667 0.00 0.00 31.52 2.71
540 549 5.003872 CGTGACTTCGACATCTTCTATGTTG 59.996 44.000 0.00 0.00 35.31 3.33
541 550 5.864474 GTGACTTCGACATCTTCTATGTTGT 59.136 40.000 5.51 0.00 35.47 3.32
542 551 6.366332 GTGACTTCGACATCTTCTATGTTGTT 59.634 38.462 5.51 0.00 35.47 2.83
543 552 6.586463 TGACTTCGACATCTTCTATGTTGTTC 59.414 38.462 5.51 2.95 35.47 3.18
544 553 6.692486 ACTTCGACATCTTCTATGTTGTTCT 58.308 36.000 5.51 0.00 35.47 3.01
545 554 6.809196 ACTTCGACATCTTCTATGTTGTTCTC 59.191 38.462 5.51 0.00 35.47 2.87
546 555 6.516739 TCGACATCTTCTATGTTGTTCTCT 57.483 37.500 5.51 0.00 35.47 3.10
547 556 6.325596 TCGACATCTTCTATGTTGTTCTCTG 58.674 40.000 5.51 0.00 35.47 3.35
548 557 5.005203 CGACATCTTCTATGTTGTTCTCTGC 59.995 44.000 0.00 0.00 31.52 4.26
549 558 5.181748 ACATCTTCTATGTTGTTCTCTGCC 58.818 41.667 0.00 0.00 0.00 4.85
550 559 5.046014 ACATCTTCTATGTTGTTCTCTGCCT 60.046 40.000 0.00 0.00 0.00 4.75
551 560 5.489792 TCTTCTATGTTGTTCTCTGCCTT 57.510 39.130 0.00 0.00 0.00 4.35
552 561 5.240891 TCTTCTATGTTGTTCTCTGCCTTG 58.759 41.667 0.00 0.00 0.00 3.61
553 562 3.942829 TCTATGTTGTTCTCTGCCTTGG 58.057 45.455 0.00 0.00 0.00 3.61
554 563 2.664402 ATGTTGTTCTCTGCCTTGGT 57.336 45.000 0.00 0.00 0.00 3.67
555 564 1.967319 TGTTGTTCTCTGCCTTGGTC 58.033 50.000 0.00 0.00 0.00 4.02
556 565 1.239347 GTTGTTCTCTGCCTTGGTCC 58.761 55.000 0.00 0.00 0.00 4.46
557 566 0.250295 TTGTTCTCTGCCTTGGTCCG 60.250 55.000 0.00 0.00 0.00 4.79
558 567 1.376037 GTTCTCTGCCTTGGTCCGG 60.376 63.158 0.00 0.00 0.00 5.14
559 568 1.841556 TTCTCTGCCTTGGTCCGGT 60.842 57.895 0.00 0.00 0.00 5.28
560 569 1.415672 TTCTCTGCCTTGGTCCGGTT 61.416 55.000 0.00 0.00 0.00 4.44
561 570 1.073199 CTCTGCCTTGGTCCGGTTT 59.927 57.895 0.00 0.00 0.00 3.27
562 571 0.955919 CTCTGCCTTGGTCCGGTTTC 60.956 60.000 0.00 0.00 0.00 2.78
563 572 1.073199 CTGCCTTGGTCCGGTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
564 573 0.537371 CTGCCTTGGTCCGGTTTCTT 60.537 55.000 0.00 0.00 0.00 2.52
565 574 0.536460 TGCCTTGGTCCGGTTTCTTC 60.536 55.000 0.00 0.00 0.00 2.87
566 575 1.241990 GCCTTGGTCCGGTTTCTTCC 61.242 60.000 0.00 0.00 0.00 3.46
567 576 0.109723 CCTTGGTCCGGTTTCTTCCA 59.890 55.000 0.00 0.00 0.00 3.53
568 577 1.235724 CTTGGTCCGGTTTCTTCCAC 58.764 55.000 0.00 0.00 0.00 4.02
569 578 0.179012 TTGGTCCGGTTTCTTCCACC 60.179 55.000 0.00 0.00 0.00 4.61
570 579 1.303074 GGTCCGGTTTCTTCCACCC 60.303 63.158 0.00 0.00 0.00 4.61
571 580 1.759236 GTCCGGTTTCTTCCACCCT 59.241 57.895 0.00 0.00 0.00 4.34
572 581 0.321387 GTCCGGTTTCTTCCACCCTC 60.321 60.000 0.00 0.00 0.00 4.30
573 582 0.473117 TCCGGTTTCTTCCACCCTCT 60.473 55.000 0.00 0.00 0.00 3.69
574 583 0.321653 CCGGTTTCTTCCACCCTCTG 60.322 60.000 0.00 0.00 0.00 3.35
575 584 0.396811 CGGTTTCTTCCACCCTCTGT 59.603 55.000 0.00 0.00 0.00 3.41
576 585 1.608283 CGGTTTCTTCCACCCTCTGTC 60.608 57.143 0.00 0.00 0.00 3.51
577 586 1.420138 GGTTTCTTCCACCCTCTGTCA 59.580 52.381 0.00 0.00 0.00 3.58
578 587 2.040412 GGTTTCTTCCACCCTCTGTCAT 59.960 50.000 0.00 0.00 0.00 3.06
579 588 3.498661 GGTTTCTTCCACCCTCTGTCATT 60.499 47.826 0.00 0.00 0.00 2.57
580 589 4.263331 GGTTTCTTCCACCCTCTGTCATTA 60.263 45.833 0.00 0.00 0.00 1.90
581 590 5.501156 GTTTCTTCCACCCTCTGTCATTAT 58.499 41.667 0.00 0.00 0.00 1.28
582 591 5.779241 TTCTTCCACCCTCTGTCATTATT 57.221 39.130 0.00 0.00 0.00 1.40
583 592 5.779241 TCTTCCACCCTCTGTCATTATTT 57.221 39.130 0.00 0.00 0.00 1.40
584 593 6.884472 TCTTCCACCCTCTGTCATTATTTA 57.116 37.500 0.00 0.00 0.00 1.40
585 594 7.265599 TCTTCCACCCTCTGTCATTATTTAA 57.734 36.000 0.00 0.00 0.00 1.52
586 595 7.338710 TCTTCCACCCTCTGTCATTATTTAAG 58.661 38.462 0.00 0.00 0.00 1.85
587 596 6.636454 TCCACCCTCTGTCATTATTTAAGT 57.364 37.500 0.00 0.00 0.00 2.24
588 597 7.743116 TCCACCCTCTGTCATTATTTAAGTA 57.257 36.000 0.00 0.00 0.00 2.24
589 598 8.153221 TCCACCCTCTGTCATTATTTAAGTAA 57.847 34.615 0.00 0.00 0.00 2.24
590 599 8.607713 TCCACCCTCTGTCATTATTTAAGTAAA 58.392 33.333 0.00 0.00 0.00 2.01
591 600 9.408648 CCACCCTCTGTCATTATTTAAGTAAAT 57.591 33.333 2.11 2.11 39.14 1.40
615 624 9.449719 AATCAGTTTTACTGGTTTCTCGATATT 57.550 29.630 6.96 0.00 46.66 1.28
617 626 9.932207 TCAGTTTTACTGGTTTCTCGATATTAA 57.068 29.630 6.96 0.00 45.94 1.40
624 633 8.824159 ACTGGTTTCTCGATATTAATCAGATG 57.176 34.615 13.01 0.00 31.93 2.90
625 634 8.642432 ACTGGTTTCTCGATATTAATCAGATGA 58.358 33.333 13.01 0.00 31.93 2.92
626 635 9.481340 CTGGTTTCTCGATATTAATCAGATGAA 57.519 33.333 0.00 0.00 31.93 2.57
627 636 9.830975 TGGTTTCTCGATATTAATCAGATGAAA 57.169 29.630 0.00 0.00 31.93 2.69
632 641 9.363763 TCTCGATATTAATCAGATGAAAGATGC 57.636 33.333 0.00 0.00 31.93 3.91
633 642 8.484641 TCGATATTAATCAGATGAAAGATGCC 57.515 34.615 0.00 0.00 31.93 4.40
634 643 7.550551 TCGATATTAATCAGATGAAAGATGCCC 59.449 37.037 0.00 0.00 31.93 5.36
635 644 7.551974 CGATATTAATCAGATGAAAGATGCCCT 59.448 37.037 0.00 0.00 31.93 5.19
636 645 6.896021 ATTAATCAGATGAAAGATGCCCTG 57.104 37.500 0.00 0.00 0.00 4.45
637 646 3.947612 ATCAGATGAAAGATGCCCTGT 57.052 42.857 0.00 0.00 0.00 4.00
638 647 3.272574 TCAGATGAAAGATGCCCTGTC 57.727 47.619 0.00 0.00 0.00 3.51
639 648 2.573009 TCAGATGAAAGATGCCCTGTCA 59.427 45.455 0.00 0.00 42.99 3.58
647 656 7.953005 TGAAAGATGCCCTGTCATTATTTAA 57.047 32.000 0.00 0.00 34.25 1.52
648 657 7.999679 TGAAAGATGCCCTGTCATTATTTAAG 58.000 34.615 0.00 0.00 34.25 1.85
649 658 7.615365 TGAAAGATGCCCTGTCATTATTTAAGT 59.385 33.333 0.00 0.00 34.25 2.24
650 659 9.120538 GAAAGATGCCCTGTCATTATTTAAGTA 57.879 33.333 0.00 0.00 0.00 2.24
651 660 9.474313 AAAGATGCCCTGTCATTATTTAAGTAA 57.526 29.630 0.00 0.00 0.00 2.24
652 661 9.474313 AAGATGCCCTGTCATTATTTAAGTAAA 57.526 29.630 0.00 0.00 0.00 2.01
653 662 9.474313 AGATGCCCTGTCATTATTTAAGTAAAA 57.526 29.630 0.00 0.00 0.00 1.52
656 665 9.084533 TGCCCTGTCATTATTTAAGTAAAAAGT 57.915 29.630 0.00 0.00 0.00 2.66
657 666 9.569167 GCCCTGTCATTATTTAAGTAAAAAGTC 57.431 33.333 0.00 0.00 0.00 3.01
723 733 5.865552 GCACATGCTTACTTTCATTGACATT 59.134 36.000 0.00 0.00 38.21 2.71
725 735 6.864685 CACATGCTTACTTTCATTGACATTGT 59.135 34.615 0.00 0.00 0.00 2.71
726 736 8.022550 CACATGCTTACTTTCATTGACATTGTA 58.977 33.333 0.00 0.00 0.00 2.41
727 737 8.239314 ACATGCTTACTTTCATTGACATTGTAG 58.761 33.333 0.00 0.68 0.00 2.74
732 742 8.918202 TTACTTTCATTGACATTGTAGTCCTT 57.082 30.769 9.50 0.00 37.73 3.36
734 744 6.207417 ACTTTCATTGACATTGTAGTCCTTGG 59.793 38.462 0.00 0.00 37.73 3.61
745 755 1.821088 AGTCCTTGGGAGTTCCTTGT 58.179 50.000 0.00 0.00 29.95 3.16
759 769 5.555966 AGTTCCTTGTTTCCAAAGCAAAAA 58.444 33.333 0.00 0.00 0.00 1.94
793 809 1.289380 GTACGGATGCGGATCTCCC 59.711 63.158 16.91 0.00 0.00 4.30
814 833 3.061271 CCGTTTGATTTGACTTTGCAACG 60.061 43.478 0.00 0.00 0.00 4.10
827 846 0.753479 TGCAACGGGAAGCAAAAGGA 60.753 50.000 0.00 0.00 37.90 3.36
870 889 1.152963 AACAAGGCAAGCCACGACT 60.153 52.632 14.40 0.00 38.92 4.18
961 1010 2.223272 GGCGTATGCAAGTTAAGCCTTC 60.223 50.000 13.51 0.00 45.35 3.46
962 1011 2.678336 GCGTATGCAAGTTAAGCCTTCT 59.322 45.455 0.89 0.00 42.15 2.85
963 1012 3.869246 GCGTATGCAAGTTAAGCCTTCTA 59.131 43.478 0.89 0.00 42.15 2.10
1029 1101 0.737804 GTGCCACACAACACACATCA 59.262 50.000 0.00 0.00 36.77 3.07
1030 1102 1.337703 GTGCCACACAACACACATCAT 59.662 47.619 0.00 0.00 36.77 2.45
1031 1103 1.608109 TGCCACACAACACACATCATC 59.392 47.619 0.00 0.00 0.00 2.92
1053 1152 2.479566 ATCAACGCACATCACTTCCT 57.520 45.000 0.00 0.00 0.00 3.36
1145 1245 4.184629 CACTACATTCTAGGCAAGGTCAC 58.815 47.826 0.00 0.00 0.00 3.67
1157 1257 2.283101 GGTCACCAATGGCAGGCA 60.283 61.111 0.00 0.00 29.15 4.75
1467 1567 4.988598 CACTGGCGCAACCTCCGT 62.989 66.667 10.83 0.00 40.22 4.69
1968 2083 1.881903 CTCTGCAGAAGACGGAGCCA 61.882 60.000 18.85 0.00 33.96 4.75
2069 2184 9.974980 GGTCTCTCTCTAATCCAAGTTAATTAG 57.025 37.037 9.44 9.44 36.99 1.73
2104 2826 7.962995 ACTCCTCAATCTTCACTATGTAAGA 57.037 36.000 0.00 0.00 36.24 2.10
2105 2827 8.367660 ACTCCTCAATCTTCACTATGTAAGAA 57.632 34.615 0.00 0.00 35.47 2.52
2107 2829 9.658799 CTCCTCAATCTTCACTATGTAAGAAAA 57.341 33.333 0.00 0.00 35.47 2.29
2115 2837 8.883731 TCTTCACTATGTAAGAAAATTAGCTGC 58.116 33.333 0.00 0.00 0.00 5.25
2116 2838 8.560355 TTCACTATGTAAGAAAATTAGCTGCA 57.440 30.769 1.02 0.00 0.00 4.41
2117 2839 8.737168 TCACTATGTAAGAAAATTAGCTGCAT 57.263 30.769 1.02 0.00 0.00 3.96
2118 2840 9.177608 TCACTATGTAAGAAAATTAGCTGCATT 57.822 29.630 1.02 0.00 0.00 3.56
2119 2841 9.443283 CACTATGTAAGAAAATTAGCTGCATTC 57.557 33.333 1.02 0.00 0.00 2.67
2121 2843 9.875675 CTATGTAAGAAAATTAGCTGCATTCTC 57.124 33.333 1.02 0.00 30.43 2.87
2122 2844 7.686438 TGTAAGAAAATTAGCTGCATTCTCA 57.314 32.000 1.02 0.00 30.43 3.27
2124 2846 8.239314 TGTAAGAAAATTAGCTGCATTCTCAAG 58.761 33.333 1.02 0.00 30.43 3.02
2126 2848 6.850555 AGAAAATTAGCTGCATTCTCAAGAC 58.149 36.000 1.02 0.00 0.00 3.01
2128 2850 6.434018 AAATTAGCTGCATTCTCAAGACTC 57.566 37.500 1.02 0.00 0.00 3.36
2130 2852 1.627329 AGCTGCATTCTCAAGACTCCA 59.373 47.619 1.02 0.00 0.00 3.86
2136 3390 4.019950 TGCATTCTCAAGACTCCAAGATGA 60.020 41.667 0.00 0.00 0.00 2.92
2137 3391 4.940046 GCATTCTCAAGACTCCAAGATGAA 59.060 41.667 0.00 0.00 0.00 2.57
2196 3741 4.625742 CACCGACGATTGTTATGTCTCTTT 59.374 41.667 0.00 0.00 0.00 2.52
2208 5084 2.795329 TGTCTCTTTTCCCCAATCTGC 58.205 47.619 0.00 0.00 0.00 4.26
2252 5128 6.152379 GCAATCATACTCATGTCACGATCTA 58.848 40.000 0.00 0.00 33.57 1.98
2947 5823 4.799473 CCATGCGCGACGTGCTTG 62.799 66.667 31.11 31.11 43.27 4.01
2962 5838 2.228138 GCTTGAGAGCCTCTGATCTG 57.772 55.000 0.00 0.00 43.29 2.90
2963 5839 1.755959 GCTTGAGAGCCTCTGATCTGA 59.244 52.381 0.00 2.03 43.29 3.27
2964 5840 2.481795 GCTTGAGAGCCTCTGATCTGAC 60.482 54.545 0.00 0.00 43.29 3.51
2965 5841 2.521547 TGAGAGCCTCTGATCTGACA 57.478 50.000 0.00 0.00 37.36 3.58
3033 5913 7.306632 GGCGTGCTGATGTAGTAGTAAATAAAG 60.307 40.741 0.00 0.00 0.00 1.85
3035 5915 8.744011 CGTGCTGATGTAGTAGTAAATAAAGTC 58.256 37.037 0.00 0.00 0.00 3.01
3040 5920 9.778993 TGATGTAGTAGTAAATAAAGTCGTGAC 57.221 33.333 0.00 0.00 0.00 3.67
3074 5959 4.808558 CAGAGTCAAGCTAGCTATCATCC 58.191 47.826 19.70 6.27 0.00 3.51
3079 5964 5.105392 AGTCAAGCTAGCTATCATCCTATGC 60.105 44.000 19.70 5.75 0.00 3.14
3080 5965 4.774200 TCAAGCTAGCTATCATCCTATGCA 59.226 41.667 19.70 0.00 0.00 3.96
3081 5966 5.105432 TCAAGCTAGCTATCATCCTATGCAG 60.105 44.000 19.70 0.00 0.00 4.41
3095 5981 8.710239 TCATCCTATGCAGTAAATTACAGGTAA 58.290 33.333 5.89 0.00 0.00 2.85
3101 5987 5.636121 TGCAGTAAATTACAGGTAAGTGTCG 59.364 40.000 5.89 0.00 31.46 4.35
3124 7646 5.067954 GGGGTTTTGTGAGAACTAGCTAAA 58.932 41.667 0.00 0.00 0.00 1.85
3138 7660 7.388500 AGAACTAGCTAAACTATCTAGGTAGCG 59.612 40.741 10.09 0.00 45.27 4.26
3139 7661 4.769859 AGCTAAACTATCTAGGTAGCGC 57.230 45.455 10.09 0.00 41.77 5.92
3140 7662 4.400120 AGCTAAACTATCTAGGTAGCGCT 58.600 43.478 17.26 17.26 41.77 5.92
3142 7664 3.900388 AAACTATCTAGGTAGCGCTCG 57.100 47.619 16.34 0.00 0.00 5.03
3143 7665 2.547299 ACTATCTAGGTAGCGCTCGT 57.453 50.000 16.34 10.25 0.00 4.18
3144 7666 2.144730 ACTATCTAGGTAGCGCTCGTG 58.855 52.381 16.34 0.78 0.00 4.35
3145 7667 1.465387 CTATCTAGGTAGCGCTCGTGG 59.535 57.143 16.34 9.78 0.00 4.94
3146 7668 0.179026 ATCTAGGTAGCGCTCGTGGA 60.179 55.000 16.34 14.91 0.00 4.02
3152 7681 2.110352 TAGCGCTCGTGGATCGTGA 61.110 57.895 16.34 0.00 40.80 4.35
3162 7691 3.314357 TCGTGGATCGTGATAGTACCAAG 59.686 47.826 0.00 0.00 40.80 3.61
3208 7738 6.716284 TGTATCAAGAATGTTGTGTATGGGA 58.284 36.000 0.00 0.00 0.00 4.37
3213 7743 7.171653 TCAAGAATGTTGTGTATGGGATAACA 58.828 34.615 0.00 0.00 35.93 2.41
3215 7745 8.303156 CAAGAATGTTGTGTATGGGATAACAAA 58.697 33.333 0.00 0.00 35.23 2.83
3335 7906 4.282957 AGCTTCACAGAATCTGAGACTTCA 59.717 41.667 18.20 0.00 31.44 3.02
3412 7983 2.879026 GGAAGAACAGAAAACGGAAGCT 59.121 45.455 0.00 0.00 0.00 3.74
3482 8092 6.496338 ACGAAATTTGGACTAGTCAATTCC 57.504 37.500 23.91 9.55 0.00 3.01
3497 8107 3.074390 TCAATTCCTTGGGAGAAAGAGCA 59.926 43.478 0.00 0.00 31.21 4.26
3499 8109 2.867109 TCCTTGGGAGAAAGAGCAAG 57.133 50.000 0.00 0.00 0.00 4.01
3501 8111 1.074566 CCTTGGGAGAAAGAGCAAGGT 59.925 52.381 0.00 0.00 35.68 3.50
3559 8169 2.164017 GTCTAGAACCTCGTTGGAGACC 59.836 54.545 0.00 0.00 43.27 3.85
3567 8177 1.276421 CTCGTTGGAGACCAGGACAAT 59.724 52.381 0.00 0.00 43.27 2.71
3578 8303 2.033448 GGACAATGGCGGTGGTGA 59.967 61.111 0.00 0.00 0.00 4.02
3600 8325 0.552848 GGAGGAAGATGAATGGGCCA 59.447 55.000 9.61 9.61 0.00 5.36
3601 8326 1.478288 GGAGGAAGATGAATGGGCCAG 60.478 57.143 13.78 0.00 0.00 4.85
3606 8331 1.754234 GATGAATGGGCCAGCCGTT 60.754 57.895 13.78 0.00 36.85 4.44
3633 8358 1.815421 CTCCAATGGTTCGGCCGAG 60.815 63.158 29.20 15.48 41.21 4.63
3640 8365 1.292541 GGTTCGGCCGAGAAGAAGT 59.707 57.895 29.20 0.00 0.00 3.01
3658 8383 4.826183 AGAAGTGTGTAGGACGTTTAGACT 59.174 41.667 0.00 0.00 0.00 3.24
3659 8384 6.000219 AGAAGTGTGTAGGACGTTTAGACTA 59.000 40.000 0.00 0.00 0.00 2.59
3660 8385 5.876612 AGTGTGTAGGACGTTTAGACTAG 57.123 43.478 0.00 0.00 0.00 2.57
3691 8448 6.094881 TCCCATTTTCTTATGATTTCCGTCAC 59.905 38.462 0.00 0.00 0.00 3.67
3695 8452 6.480524 TTTCTTATGATTTCCGTCACACTG 57.519 37.500 0.00 0.00 0.00 3.66
3697 8454 2.479566 ATGATTTCCGTCACACTGCT 57.520 45.000 0.00 0.00 0.00 4.24
3699 8456 2.683968 TGATTTCCGTCACACTGCTAC 58.316 47.619 0.00 0.00 0.00 3.58
3701 8458 3.508402 TGATTTCCGTCACACTGCTACTA 59.492 43.478 0.00 0.00 0.00 1.82
3702 8459 3.293311 TTTCCGTCACACTGCTACTAC 57.707 47.619 0.00 0.00 0.00 2.73
3703 8460 2.195741 TCCGTCACACTGCTACTACT 57.804 50.000 0.00 0.00 0.00 2.57
3705 8462 1.132643 CCGTCACACTGCTACTACTCC 59.867 57.143 0.00 0.00 0.00 3.85
3706 8463 1.132643 CGTCACACTGCTACTACTCCC 59.867 57.143 0.00 0.00 0.00 4.30
3707 8464 2.448453 GTCACACTGCTACTACTCCCT 58.552 52.381 0.00 0.00 0.00 4.20
3708 8465 2.424246 GTCACACTGCTACTACTCCCTC 59.576 54.545 0.00 0.00 0.00 4.30
3709 8466 1.402259 CACACTGCTACTACTCCCTCG 59.598 57.143 0.00 0.00 0.00 4.63
3710 8467 1.025812 CACTGCTACTACTCCCTCGG 58.974 60.000 0.00 0.00 0.00 4.63
3712 8469 1.005687 ACTGCTACTACTCCCTCGGTT 59.994 52.381 0.00 0.00 0.00 4.44
3713 8470 2.100989 CTGCTACTACTCCCTCGGTTT 58.899 52.381 0.00 0.00 0.00 3.27
3715 8472 2.291411 TGCTACTACTCCCTCGGTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
3717 8474 3.950395 GCTACTACTCCCTCGGTTTCTAA 59.050 47.826 0.00 0.00 0.00 2.10
3718 8475 4.400567 GCTACTACTCCCTCGGTTTCTAAA 59.599 45.833 0.00 0.00 0.00 1.85
3719 8476 5.068855 GCTACTACTCCCTCGGTTTCTAAAT 59.931 44.000 0.00 0.00 0.00 1.40
3720 8477 6.264067 GCTACTACTCCCTCGGTTTCTAAATA 59.736 42.308 0.00 0.00 0.00 1.40
3721 8478 7.039853 GCTACTACTCCCTCGGTTTCTAAATAT 60.040 40.741 0.00 0.00 0.00 1.28
3722 8479 9.512588 CTACTACTCCCTCGGTTTCTAAATATA 57.487 37.037 0.00 0.00 0.00 0.86
3723 8480 8.773033 ACTACTCCCTCGGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3724 8481 9.205513 ACTACTCCCTCGGTTTCTAAATATAAA 57.794 33.333 0.00 0.00 0.00 1.40
3725 8482 9.473640 CTACTCCCTCGGTTTCTAAATATAAAC 57.526 37.037 0.00 0.00 35.34 2.01
3748 8505 9.807921 AAACCCTTTTAGAGATTTCAATACAGA 57.192 29.630 0.00 0.00 0.00 3.41
3749 8506 9.981460 AACCCTTTTAGAGATTTCAATACAGAT 57.019 29.630 0.00 0.00 0.00 2.90
3750 8507 9.981460 ACCCTTTTAGAGATTTCAATACAGATT 57.019 29.630 0.00 0.00 0.00 2.40
3803 8560 8.723942 ATAGTGTAGATTCACTCATTTTGACC 57.276 34.615 2.59 0.00 45.79 4.02
3804 8561 5.639506 AGTGTAGATTCACTCATTTTGACCG 59.360 40.000 0.00 0.00 44.07 4.79
3805 8562 5.408604 GTGTAGATTCACTCATTTTGACCGT 59.591 40.000 0.00 0.00 35.68 4.83
3806 8563 6.588756 GTGTAGATTCACTCATTTTGACCGTA 59.411 38.462 0.00 0.00 35.68 4.02
3807 8564 7.277981 GTGTAGATTCACTCATTTTGACCGTAT 59.722 37.037 0.00 0.00 35.68 3.06
3808 8565 6.668541 AGATTCACTCATTTTGACCGTATG 57.331 37.500 0.00 0.00 0.00 2.39
3809 8566 6.173339 AGATTCACTCATTTTGACCGTATGT 58.827 36.000 0.00 0.00 0.00 2.29
3810 8567 7.327975 AGATTCACTCATTTTGACCGTATGTA 58.672 34.615 0.00 0.00 0.00 2.29
3811 8568 7.822334 AGATTCACTCATTTTGACCGTATGTAA 59.178 33.333 0.00 0.00 0.00 2.41
3812 8569 7.915293 TTCACTCATTTTGACCGTATGTAAT 57.085 32.000 0.00 0.00 0.00 1.89
3813 8570 7.915293 TCACTCATTTTGACCGTATGTAATT 57.085 32.000 0.00 0.00 0.00 1.40
3814 8571 7.970384 TCACTCATTTTGACCGTATGTAATTC 58.030 34.615 0.00 0.00 0.00 2.17
3815 8572 7.604545 TCACTCATTTTGACCGTATGTAATTCA 59.395 33.333 0.00 0.00 0.00 2.57
3816 8573 8.397906 CACTCATTTTGACCGTATGTAATTCAT 58.602 33.333 0.00 0.00 40.25 2.57
3817 8574 9.607988 ACTCATTTTGACCGTATGTAATTCATA 57.392 29.630 0.00 0.00 37.91 2.15
3855 8612 9.661954 AAAAGTCTATATGTAGAATCAGAGGGA 57.338 33.333 0.11 0.00 38.62 4.20
3856 8613 9.661954 AAAGTCTATATGTAGAATCAGAGGGAA 57.338 33.333 0.11 0.00 38.62 3.97
3857 8614 9.836179 AAGTCTATATGTAGAATCAGAGGGAAT 57.164 33.333 0.11 0.00 38.62 3.01
3899 8656 3.118445 AGCTAGAAGGAGTCCAAAGATGC 60.118 47.826 12.86 8.32 0.00 3.91
3903 8660 1.741770 GGAGTCCAAAGATGCGCGT 60.742 57.895 8.43 0.00 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.935789 CCTTACTGGTTCATCGGAAAGTTTA 59.064 40.000 0.00 0.00 34.13 2.01
35 36 5.007385 GGTGATCATAACGACACCTTACT 57.993 43.478 0.00 0.00 46.14 2.24
84 85 5.375417 TCTTACCGTACGATGAACTTTGA 57.625 39.130 18.76 0.00 0.00 2.69
149 150 9.653287 CCAATTGTTATAACACAGAGAGTTAGA 57.347 33.333 17.85 0.00 38.92 2.10
150 151 8.391106 GCCAATTGTTATAACACAGAGAGTTAG 58.609 37.037 17.85 0.00 38.92 2.34
175 176 7.938563 ACTTTGAGATAATATCGTCAGAAGC 57.061 36.000 0.00 0.00 0.00 3.86
207 208 3.575965 ATTGAATCGACCCAAACTTGC 57.424 42.857 5.56 0.00 0.00 4.01
235 237 8.918961 ACTTTGAGAATATGACGTTAGAAGAG 57.081 34.615 0.00 0.00 0.00 2.85
290 292 4.096833 TCATGCTTTCCGGATCTTTGAATG 59.903 41.667 4.15 4.73 0.00 2.67
293 295 3.348647 TCATGCTTTCCGGATCTTTGA 57.651 42.857 4.15 2.58 0.00 2.69
295 297 3.629398 GTGATCATGCTTTCCGGATCTTT 59.371 43.478 4.15 0.00 37.60 2.52
308 310 5.180117 ACTCAAGTGTTGTTAGTGATCATGC 59.820 40.000 0.00 0.00 0.00 4.06
332 335 8.095169 GGTTTCTATTCTTGTCTCTAAGACCAA 58.905 37.037 4.74 0.00 44.44 3.67
334 337 7.612677 TGGTTTCTATTCTTGTCTCTAAGACC 58.387 38.462 4.74 0.00 44.44 3.85
354 357 6.904463 ATGATAAACGGTAAAACCTGGTTT 57.096 33.333 18.84 18.84 36.35 3.27
395 398 6.155136 TGAAATATGCGATTCAGTGCAAAAA 58.845 32.000 0.00 0.00 45.45 1.94
417 420 6.864151 ATGCTATAACTGCTATGATCCTGA 57.136 37.500 0.00 0.00 0.00 3.86
491 499 5.036117 TGGAAATATGTCCTAGAGGCAAC 57.964 43.478 13.33 0.00 38.62 4.17
516 525 4.663166 ACATAGAAGATGTCGAAGTCACG 58.337 43.478 0.00 0.00 0.00 4.35
517 526 5.864474 ACAACATAGAAGATGTCGAAGTCAC 59.136 40.000 0.00 0.00 0.00 3.67
518 527 6.025749 ACAACATAGAAGATGTCGAAGTCA 57.974 37.500 0.00 0.00 0.00 3.41
519 528 6.809196 AGAACAACATAGAAGATGTCGAAGTC 59.191 38.462 0.00 0.00 0.00 3.01
520 529 6.692486 AGAACAACATAGAAGATGTCGAAGT 58.308 36.000 0.00 0.00 0.00 3.01
521 530 7.009083 CAGAGAACAACATAGAAGATGTCGAAG 59.991 40.741 0.00 0.00 0.00 3.79
522 531 6.808704 CAGAGAACAACATAGAAGATGTCGAA 59.191 38.462 0.00 0.00 0.00 3.71
523 532 6.325596 CAGAGAACAACATAGAAGATGTCGA 58.674 40.000 0.00 0.00 0.00 4.20
524 533 5.005203 GCAGAGAACAACATAGAAGATGTCG 59.995 44.000 0.00 0.00 0.00 4.35
525 534 5.293079 GGCAGAGAACAACATAGAAGATGTC 59.707 44.000 0.00 0.00 0.00 3.06
526 535 5.046014 AGGCAGAGAACAACATAGAAGATGT 60.046 40.000 0.00 0.00 0.00 3.06
527 536 5.426504 AGGCAGAGAACAACATAGAAGATG 58.573 41.667 0.00 0.00 0.00 2.90
528 537 5.690464 AGGCAGAGAACAACATAGAAGAT 57.310 39.130 0.00 0.00 0.00 2.40
529 538 5.240891 CAAGGCAGAGAACAACATAGAAGA 58.759 41.667 0.00 0.00 0.00 2.87
530 539 4.394300 CCAAGGCAGAGAACAACATAGAAG 59.606 45.833 0.00 0.00 0.00 2.85
531 540 4.202461 ACCAAGGCAGAGAACAACATAGAA 60.202 41.667 0.00 0.00 0.00 2.10
532 541 3.327757 ACCAAGGCAGAGAACAACATAGA 59.672 43.478 0.00 0.00 0.00 1.98
533 542 3.679389 ACCAAGGCAGAGAACAACATAG 58.321 45.455 0.00 0.00 0.00 2.23
534 543 3.559171 GGACCAAGGCAGAGAACAACATA 60.559 47.826 0.00 0.00 0.00 2.29
535 544 2.508526 GACCAAGGCAGAGAACAACAT 58.491 47.619 0.00 0.00 0.00 2.71
536 545 1.476833 GGACCAAGGCAGAGAACAACA 60.477 52.381 0.00 0.00 0.00 3.33
537 546 1.239347 GGACCAAGGCAGAGAACAAC 58.761 55.000 0.00 0.00 0.00 3.32
538 547 0.250295 CGGACCAAGGCAGAGAACAA 60.250 55.000 0.00 0.00 0.00 2.83
539 548 1.371183 CGGACCAAGGCAGAGAACA 59.629 57.895 0.00 0.00 0.00 3.18
540 549 1.376037 CCGGACCAAGGCAGAGAAC 60.376 63.158 0.00 0.00 0.00 3.01
541 550 1.415672 AACCGGACCAAGGCAGAGAA 61.416 55.000 9.46 0.00 0.00 2.87
542 551 1.415672 AAACCGGACCAAGGCAGAGA 61.416 55.000 9.46 0.00 0.00 3.10
543 552 0.955919 GAAACCGGACCAAGGCAGAG 60.956 60.000 9.46 0.00 0.00 3.35
544 553 1.072505 GAAACCGGACCAAGGCAGA 59.927 57.895 9.46 0.00 0.00 4.26
545 554 0.537371 AAGAAACCGGACCAAGGCAG 60.537 55.000 9.46 0.00 0.00 4.85
546 555 0.536460 GAAGAAACCGGACCAAGGCA 60.536 55.000 9.46 0.00 0.00 4.75
547 556 1.241990 GGAAGAAACCGGACCAAGGC 61.242 60.000 9.46 0.00 0.00 4.35
548 557 0.109723 TGGAAGAAACCGGACCAAGG 59.890 55.000 9.46 0.00 0.00 3.61
549 558 1.235724 GTGGAAGAAACCGGACCAAG 58.764 55.000 9.46 0.00 32.32 3.61
550 559 0.179012 GGTGGAAGAAACCGGACCAA 60.179 55.000 9.46 0.00 32.32 3.67
551 560 1.452801 GGTGGAAGAAACCGGACCA 59.547 57.895 9.46 4.79 0.00 4.02
552 561 1.303074 GGGTGGAAGAAACCGGACC 60.303 63.158 9.46 1.33 38.70 4.46
553 562 0.321387 GAGGGTGGAAGAAACCGGAC 60.321 60.000 9.46 0.00 38.70 4.79
554 563 0.473117 AGAGGGTGGAAGAAACCGGA 60.473 55.000 9.46 0.00 38.70 5.14
555 564 0.321653 CAGAGGGTGGAAGAAACCGG 60.322 60.000 0.00 0.00 38.70 5.28
556 565 0.396811 ACAGAGGGTGGAAGAAACCG 59.603 55.000 0.00 0.00 38.70 4.44
557 566 1.420138 TGACAGAGGGTGGAAGAAACC 59.580 52.381 0.00 0.00 36.94 3.27
558 567 2.930826 TGACAGAGGGTGGAAGAAAC 57.069 50.000 0.00 0.00 0.00 2.78
559 568 5.779241 ATAATGACAGAGGGTGGAAGAAA 57.221 39.130 0.00 0.00 0.00 2.52
560 569 5.779241 AATAATGACAGAGGGTGGAAGAA 57.221 39.130 0.00 0.00 0.00 2.52
561 570 5.779241 AAATAATGACAGAGGGTGGAAGA 57.221 39.130 0.00 0.00 0.00 2.87
562 571 7.112779 ACTTAAATAATGACAGAGGGTGGAAG 58.887 38.462 0.00 0.00 0.00 3.46
563 572 7.027874 ACTTAAATAATGACAGAGGGTGGAA 57.972 36.000 0.00 0.00 0.00 3.53
564 573 6.636454 ACTTAAATAATGACAGAGGGTGGA 57.364 37.500 0.00 0.00 0.00 4.02
565 574 8.801882 TTTACTTAAATAATGACAGAGGGTGG 57.198 34.615 0.00 0.00 0.00 4.61
598 607 9.914131 CATCTGATTAATATCGAGAAACCAGTA 57.086 33.333 0.00 0.00 33.23 2.74
599 608 8.642432 TCATCTGATTAATATCGAGAAACCAGT 58.358 33.333 0.00 0.00 33.23 4.00
600 609 9.481340 TTCATCTGATTAATATCGAGAAACCAG 57.519 33.333 0.00 0.00 33.23 4.00
601 610 9.830975 TTTCATCTGATTAATATCGAGAAACCA 57.169 29.630 0.00 0.00 33.23 3.67
606 615 9.363763 GCATCTTTCATCTGATTAATATCGAGA 57.636 33.333 0.00 0.00 33.23 4.04
607 616 8.602328 GGCATCTTTCATCTGATTAATATCGAG 58.398 37.037 0.00 0.00 33.23 4.04
608 617 7.550551 GGGCATCTTTCATCTGATTAATATCGA 59.449 37.037 0.00 0.00 33.23 3.59
609 618 7.551974 AGGGCATCTTTCATCTGATTAATATCG 59.448 37.037 0.00 0.00 33.23 2.92
610 619 8.675504 CAGGGCATCTTTCATCTGATTAATATC 58.324 37.037 0.00 0.00 0.00 1.63
611 620 8.168725 ACAGGGCATCTTTCATCTGATTAATAT 58.831 33.333 0.00 0.00 0.00 1.28
612 621 7.520798 ACAGGGCATCTTTCATCTGATTAATA 58.479 34.615 0.00 0.00 0.00 0.98
613 622 6.371278 ACAGGGCATCTTTCATCTGATTAAT 58.629 36.000 0.00 0.00 0.00 1.40
614 623 5.759059 ACAGGGCATCTTTCATCTGATTAA 58.241 37.500 0.00 0.00 0.00 1.40
615 624 5.104402 TGACAGGGCATCTTTCATCTGATTA 60.104 40.000 0.00 0.00 28.10 1.75
616 625 4.205587 GACAGGGCATCTTTCATCTGATT 58.794 43.478 0.00 0.00 0.00 2.57
617 626 3.201487 TGACAGGGCATCTTTCATCTGAT 59.799 43.478 0.00 0.00 28.10 2.90
618 627 2.573009 TGACAGGGCATCTTTCATCTGA 59.427 45.455 0.00 0.00 28.10 3.27
619 628 2.995283 TGACAGGGCATCTTTCATCTG 58.005 47.619 0.00 0.00 28.10 2.90
620 629 3.947612 ATGACAGGGCATCTTTCATCT 57.052 42.857 3.15 0.00 38.19 2.90
621 630 6.645790 AATAATGACAGGGCATCTTTCATC 57.354 37.500 7.94 0.00 40.80 2.92
622 631 8.537728 TTAAATAATGACAGGGCATCTTTCAT 57.462 30.769 3.15 3.15 42.78 2.57
623 632 7.615365 ACTTAAATAATGACAGGGCATCTTTCA 59.385 33.333 0.00 0.00 36.71 2.69
624 633 8.000780 ACTTAAATAATGACAGGGCATCTTTC 57.999 34.615 0.00 0.00 0.00 2.62
625 634 7.961326 ACTTAAATAATGACAGGGCATCTTT 57.039 32.000 0.00 0.00 0.00 2.52
626 635 9.474313 TTTACTTAAATAATGACAGGGCATCTT 57.526 29.630 0.00 0.00 0.00 2.40
627 636 9.474313 TTTTACTTAAATAATGACAGGGCATCT 57.526 29.630 0.00 0.00 0.00 2.90
630 639 9.084533 ACTTTTTACTTAAATAATGACAGGGCA 57.915 29.630 0.00 0.00 0.00 5.36
631 640 9.569167 GACTTTTTACTTAAATAATGACAGGGC 57.431 33.333 0.00 0.00 0.00 5.19
643 652 9.915629 TGCTCTGTTTTTGACTTTTTACTTAAA 57.084 25.926 0.00 0.00 0.00 1.52
644 653 9.915629 TTGCTCTGTTTTTGACTTTTTACTTAA 57.084 25.926 0.00 0.00 0.00 1.85
645 654 9.915629 TTTGCTCTGTTTTTGACTTTTTACTTA 57.084 25.926 0.00 0.00 0.00 2.24
646 655 8.825667 TTTGCTCTGTTTTTGACTTTTTACTT 57.174 26.923 0.00 0.00 0.00 2.24
647 656 8.825667 TTTTGCTCTGTTTTTGACTTTTTACT 57.174 26.923 0.00 0.00 0.00 2.24
650 659 9.396938 CAATTTTTGCTCTGTTTTTGACTTTTT 57.603 25.926 0.00 0.00 0.00 1.94
651 660 8.953507 CAATTTTTGCTCTGTTTTTGACTTTT 57.046 26.923 0.00 0.00 0.00 2.27
693 702 0.874390 AAGTAAGCATGTGCACCACG 59.126 50.000 15.69 3.47 45.16 4.94
694 703 2.293122 TGAAAGTAAGCATGTGCACCAC 59.707 45.455 15.69 3.35 45.16 4.16
723 733 2.637872 CAAGGAACTCCCAAGGACTACA 59.362 50.000 0.00 0.00 38.49 2.74
725 735 2.986050 ACAAGGAACTCCCAAGGACTA 58.014 47.619 0.00 0.00 38.49 2.59
726 736 1.821088 ACAAGGAACTCCCAAGGACT 58.179 50.000 0.00 0.00 38.49 3.85
727 737 2.658807 AACAAGGAACTCCCAAGGAC 57.341 50.000 0.00 0.00 38.49 3.85
745 755 4.128643 CTGGATGCTTTTTGCTTTGGAAA 58.871 39.130 0.00 0.00 43.37 3.13
759 769 0.108615 GTACGCAGTGTCTGGATGCT 60.109 55.000 0.00 0.00 45.73 3.79
762 772 0.963856 TCCGTACGCAGTGTCTGGAT 60.964 55.000 10.49 0.00 45.73 3.41
767 777 2.505498 CGCATCCGTACGCAGTGTC 61.505 63.158 10.49 3.99 45.73 3.67
769 779 2.954020 ATCCGCATCCGTACGCAGTG 62.954 60.000 10.49 8.94 45.73 3.66
786 802 5.393962 CAAAGTCAAATCAAACGGGAGATC 58.606 41.667 0.00 0.00 0.00 2.75
793 809 3.061271 CCGTTGCAAAGTCAAATCAAACG 60.061 43.478 11.48 1.83 0.00 3.60
798 814 3.308530 CTTCCCGTTGCAAAGTCAAATC 58.691 45.455 11.48 0.00 0.00 2.17
804 823 2.499214 TTGCTTCCCGTTGCAAAGT 58.501 47.368 11.48 0.00 44.75 2.66
814 833 2.711542 TCGAGATTCCTTTTGCTTCCC 58.288 47.619 0.00 0.00 0.00 3.97
823 842 0.249657 GCGCTGGATCGAGATTCCTT 60.250 55.000 9.17 0.00 0.00 3.36
827 846 2.028190 CGGCGCTGGATCGAGATT 59.972 61.111 8.83 0.00 0.00 2.40
870 889 5.950758 ATTATTGGTTCGTACAGCAAACA 57.049 34.783 2.42 0.00 37.68 2.83
961 1010 4.979197 GCGTGGTTCATCTTCATCTAGTAG 59.021 45.833 0.00 0.00 0.00 2.57
962 1011 4.401202 TGCGTGGTTCATCTTCATCTAGTA 59.599 41.667 0.00 0.00 0.00 1.82
963 1012 3.195610 TGCGTGGTTCATCTTCATCTAGT 59.804 43.478 0.00 0.00 0.00 2.57
1029 1101 2.715046 AGTGATGTGCGTTGATTGGAT 58.285 42.857 0.00 0.00 0.00 3.41
1030 1102 2.183478 AGTGATGTGCGTTGATTGGA 57.817 45.000 0.00 0.00 0.00 3.53
1031 1103 2.414559 GGAAGTGATGTGCGTTGATTGG 60.415 50.000 0.00 0.00 0.00 3.16
1145 1245 2.501223 CTTGCTGTGCCTGCCATTGG 62.501 60.000 0.00 0.00 0.00 3.16
1311 1411 4.699522 GGCGAGGACACCACCACC 62.700 72.222 0.00 0.00 0.00 4.61
2069 2184 7.650104 GTGAAGATTGAGGAGTAGTATAAGTGC 59.350 40.741 0.00 0.00 0.00 4.40
2076 2322 9.916360 TTACATAGTGAAGATTGAGGAGTAGTA 57.084 33.333 0.00 0.00 0.00 1.82
2078 2324 9.126151 TCTTACATAGTGAAGATTGAGGAGTAG 57.874 37.037 0.00 0.00 0.00 2.57
2080 2326 7.962995 TCTTACATAGTGAAGATTGAGGAGT 57.037 36.000 0.00 0.00 0.00 3.85
2081 2327 9.658799 TTTTCTTACATAGTGAAGATTGAGGAG 57.341 33.333 0.00 0.00 31.91 3.69
2098 2820 7.686438 TGAGAATGCAGCTAATTTTCTTACA 57.314 32.000 11.08 0.00 0.00 2.41
2101 2823 7.176340 AGTCTTGAGAATGCAGCTAATTTTCTT 59.824 33.333 11.08 0.00 0.00 2.52
2104 2826 6.127786 GGAGTCTTGAGAATGCAGCTAATTTT 60.128 38.462 0.00 0.00 30.82 1.82
2105 2827 5.356470 GGAGTCTTGAGAATGCAGCTAATTT 59.644 40.000 0.00 0.00 30.82 1.82
2107 2829 4.080695 TGGAGTCTTGAGAATGCAGCTAAT 60.081 41.667 0.00 0.00 35.66 1.73
2110 2832 1.627329 TGGAGTCTTGAGAATGCAGCT 59.373 47.619 0.00 0.00 35.66 4.24
2111 2833 2.105006 TGGAGTCTTGAGAATGCAGC 57.895 50.000 0.00 0.00 35.66 5.25
2112 2834 3.935315 TCTTGGAGTCTTGAGAATGCAG 58.065 45.455 3.10 0.00 41.15 4.41
2114 2836 4.511527 TCATCTTGGAGTCTTGAGAATGC 58.488 43.478 0.00 0.00 0.00 3.56
2115 2837 6.128063 GGTTTCATCTTGGAGTCTTGAGAATG 60.128 42.308 0.00 0.00 0.00 2.67
2116 2838 5.942826 GGTTTCATCTTGGAGTCTTGAGAAT 59.057 40.000 0.00 0.00 0.00 2.40
2117 2839 5.163205 TGGTTTCATCTTGGAGTCTTGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
2118 2840 4.347876 TGGTTTCATCTTGGAGTCTTGAGA 59.652 41.667 0.00 0.00 0.00 3.27
2119 2841 4.645535 TGGTTTCATCTTGGAGTCTTGAG 58.354 43.478 0.00 0.00 0.00 3.02
2121 2843 4.645535 TCTGGTTTCATCTTGGAGTCTTG 58.354 43.478 0.00 0.00 0.00 3.02
2122 2844 4.982241 TCTGGTTTCATCTTGGAGTCTT 57.018 40.909 0.00 0.00 0.00 3.01
2124 2846 6.410540 AGTATTCTGGTTTCATCTTGGAGTC 58.589 40.000 0.00 0.00 0.00 3.36
2126 2848 7.383572 CGATAGTATTCTGGTTTCATCTTGGAG 59.616 40.741 0.00 0.00 0.00 3.86
2128 2850 7.413475 CGATAGTATTCTGGTTTCATCTTGG 57.587 40.000 0.00 0.00 0.00 3.61
2196 3741 6.311735 AGTTTTAGTTTAGCAGATTGGGGAA 58.688 36.000 0.00 0.00 0.00 3.97
2208 5084 4.312443 TGCCTCCACGAGTTTTAGTTTAG 58.688 43.478 0.00 0.00 0.00 1.85
2252 5128 2.549754 CACCGAGAAAATGAGTGCAGTT 59.450 45.455 0.00 0.00 33.05 3.16
2790 5666 2.203195 GCCAGCACCATGCCGATA 60.203 61.111 0.00 0.00 46.52 2.92
2947 5823 3.243839 GGATTGTCAGATCAGAGGCTCTC 60.244 52.174 15.60 3.86 0.00 3.20
3033 5913 1.222115 GCTCACACAAGGGTCACGAC 61.222 60.000 0.00 0.00 0.00 4.34
3035 5915 1.224069 CTGCTCACACAAGGGTCACG 61.224 60.000 0.00 0.00 0.00 4.35
3040 5920 0.394192 TGACTCTGCTCACACAAGGG 59.606 55.000 0.00 0.00 0.00 3.95
3074 5959 8.718102 ACACTTACCTGTAATTTACTGCATAG 57.282 34.615 7.99 6.71 0.00 2.23
3079 5964 5.579511 CCCGACACTTACCTGTAATTTACTG 59.420 44.000 7.99 7.20 0.00 2.74
3080 5965 5.337813 CCCCGACACTTACCTGTAATTTACT 60.338 44.000 7.99 0.00 0.00 2.24
3081 5966 4.872124 CCCCGACACTTACCTGTAATTTAC 59.128 45.833 0.00 0.00 0.00 2.01
3095 5981 0.834612 TCTCACAAAACCCCGACACT 59.165 50.000 0.00 0.00 0.00 3.55
3101 5987 3.141767 AGCTAGTTCTCACAAAACCCC 57.858 47.619 0.00 0.00 0.00 4.95
3124 7646 2.144730 CACGAGCGCTACCTAGATAGT 58.855 52.381 11.50 0.00 0.00 2.12
3138 7660 2.350580 GGTACTATCACGATCCACGAGC 60.351 54.545 0.00 0.00 45.77 5.03
3139 7661 2.876550 TGGTACTATCACGATCCACGAG 59.123 50.000 0.00 0.00 45.77 4.18
3140 7662 2.921821 TGGTACTATCACGATCCACGA 58.078 47.619 0.00 0.00 45.77 4.35
3142 7664 3.381949 GCTTGGTACTATCACGATCCAC 58.618 50.000 0.00 0.00 0.00 4.02
3143 7665 2.364324 GGCTTGGTACTATCACGATCCA 59.636 50.000 0.00 0.00 0.00 3.41
3144 7666 2.364324 TGGCTTGGTACTATCACGATCC 59.636 50.000 0.00 0.00 0.00 3.36
3145 7667 3.643763 CTGGCTTGGTACTATCACGATC 58.356 50.000 0.00 0.00 0.00 3.69
3146 7668 2.224066 GCTGGCTTGGTACTATCACGAT 60.224 50.000 0.00 0.00 0.00 3.73
3152 7681 4.344104 ACAAATTGCTGGCTTGGTACTAT 58.656 39.130 0.00 0.00 0.00 2.12
3162 7691 7.420184 ACAAACTAAATTACAAATTGCTGGC 57.580 32.000 0.00 0.00 0.00 4.85
3263 7795 3.065371 CGTAAGCCCAAATCCTGAATGTC 59.935 47.826 0.00 0.00 0.00 3.06
3363 7934 5.879237 TCCGCTTATTTGCAAATACAGAAG 58.121 37.500 27.44 23.67 31.03 2.85
3436 8007 8.868916 TCGTTTTCAGGTAACCGTATAAATAAC 58.131 33.333 0.00 0.00 37.17 1.89
3482 8092 2.575805 ACCTTGCTCTTTCTCCCAAG 57.424 50.000 0.00 0.00 35.61 3.61
3497 8107 0.969894 CACCTCGACCTCAGAACCTT 59.030 55.000 0.00 0.00 0.00 3.50
3499 8109 1.592223 CCACCTCGACCTCAGAACC 59.408 63.158 0.00 0.00 0.00 3.62
3501 8111 1.609501 CCCCACCTCGACCTCAGAA 60.610 63.158 0.00 0.00 0.00 3.02
3530 8140 4.029472 GGTTCTAGACCGGCCTCA 57.971 61.111 0.00 0.00 39.00 3.86
3541 8151 2.168496 CTGGTCTCCAACGAGGTTCTA 58.832 52.381 0.00 0.00 39.02 2.10
3559 8169 2.034066 ACCACCGCCATTGTCCTG 59.966 61.111 0.00 0.00 0.00 3.86
3567 8177 2.997315 CTCCTCTCACCACCGCCA 60.997 66.667 0.00 0.00 0.00 5.69
3578 8303 1.773653 GCCCATTCATCTTCCTCCTCT 59.226 52.381 0.00 0.00 0.00 3.69
3600 8325 2.722201 GGAGATCGACCCAACGGCT 61.722 63.158 0.00 0.00 0.00 5.52
3601 8326 2.202892 GGAGATCGACCCAACGGC 60.203 66.667 0.00 0.00 0.00 5.68
3606 8331 1.209504 GAACCATTGGAGATCGACCCA 59.790 52.381 10.37 5.24 0.00 4.51
3633 8358 5.628606 GTCTAAACGTCCTACACACTTCTTC 59.371 44.000 0.00 0.00 0.00 2.87
3640 8365 4.330250 AGCTAGTCTAAACGTCCTACACA 58.670 43.478 0.00 0.00 0.00 3.72
3658 8383 6.073447 TCATAAGAAAATGGGACCAAGCTA 57.927 37.500 0.00 0.00 0.00 3.32
3659 8384 4.934356 TCATAAGAAAATGGGACCAAGCT 58.066 39.130 0.00 0.00 0.00 3.74
3660 8385 5.859205 ATCATAAGAAAATGGGACCAAGC 57.141 39.130 0.00 0.00 0.00 4.01
3691 8448 1.025812 CCGAGGGAGTAGTAGCAGTG 58.974 60.000 0.00 0.00 0.00 3.66
3695 8452 2.377073 AGAAACCGAGGGAGTAGTAGC 58.623 52.381 0.00 0.00 0.00 3.58
3697 8454 9.866655 TTATATTTAGAAACCGAGGGAGTAGTA 57.133 33.333 0.00 0.00 0.00 1.82
3699 8456 9.473640 GTTTATATTTAGAAACCGAGGGAGTAG 57.526 37.037 0.00 0.00 32.79 2.57
3701 8458 7.278135 GGTTTATATTTAGAAACCGAGGGAGT 58.722 38.462 10.22 0.00 44.50 3.85
3702 8459 7.725818 GGTTTATATTTAGAAACCGAGGGAG 57.274 40.000 10.22 0.00 44.50 4.30
3722 8479 9.807921 TCTGTATTGAAATCTCTAAAAGGGTTT 57.192 29.630 0.00 0.00 0.00 3.27
3723 8480 9.981460 ATCTGTATTGAAATCTCTAAAAGGGTT 57.019 29.630 0.00 0.00 0.00 4.11
3724 8481 9.981460 AATCTGTATTGAAATCTCTAAAAGGGT 57.019 29.630 0.00 0.00 0.00 4.34
3781 8538 5.408604 ACGGTCAAAATGAGTGAATCTACAC 59.591 40.000 0.00 0.00 40.60 2.90
3782 8539 5.547465 ACGGTCAAAATGAGTGAATCTACA 58.453 37.500 0.00 0.00 0.00 2.74
3783 8540 7.277981 ACATACGGTCAAAATGAGTGAATCTAC 59.722 37.037 0.00 0.00 0.00 2.59
3784 8541 7.327975 ACATACGGTCAAAATGAGTGAATCTA 58.672 34.615 0.00 0.00 0.00 1.98
3785 8542 6.173339 ACATACGGTCAAAATGAGTGAATCT 58.827 36.000 0.00 0.00 0.00 2.40
3786 8543 6.422776 ACATACGGTCAAAATGAGTGAATC 57.577 37.500 0.00 0.00 0.00 2.52
3787 8544 7.915293 TTACATACGGTCAAAATGAGTGAAT 57.085 32.000 0.00 0.00 0.00 2.57
3788 8545 7.915293 ATTACATACGGTCAAAATGAGTGAA 57.085 32.000 0.00 0.00 0.00 3.18
3789 8546 7.604545 TGAATTACATACGGTCAAAATGAGTGA 59.395 33.333 0.00 0.00 0.00 3.41
3790 8547 7.747888 TGAATTACATACGGTCAAAATGAGTG 58.252 34.615 0.00 0.00 0.00 3.51
3791 8548 7.915293 TGAATTACATACGGTCAAAATGAGT 57.085 32.000 0.00 0.00 0.00 3.41
3829 8586 9.661954 TCCCTCTGATTCTACATATAGACTTTT 57.338 33.333 0.00 0.00 37.15 2.27
3830 8587 9.661954 TTCCCTCTGATTCTACATATAGACTTT 57.338 33.333 0.00 0.00 37.15 2.66
3831 8588 9.836179 ATTCCCTCTGATTCTACATATAGACTT 57.164 33.333 0.00 0.00 37.15 3.01
3839 8596 9.213777 TGTAAACTATTCCCTCTGATTCTACAT 57.786 33.333 0.00 0.00 0.00 2.29
3840 8597 8.475639 GTGTAAACTATTCCCTCTGATTCTACA 58.524 37.037 0.00 0.00 0.00 2.74
3841 8598 8.475639 TGTGTAAACTATTCCCTCTGATTCTAC 58.524 37.037 0.00 0.00 0.00 2.59
3842 8599 8.603898 TGTGTAAACTATTCCCTCTGATTCTA 57.396 34.615 0.00 0.00 0.00 2.10
3843 8600 7.496346 TGTGTAAACTATTCCCTCTGATTCT 57.504 36.000 0.00 0.00 0.00 2.40
3844 8601 8.561738 TTTGTGTAAACTATTCCCTCTGATTC 57.438 34.615 0.00 0.00 0.00 2.52
3845 8602 8.934023 TTTTGTGTAAACTATTCCCTCTGATT 57.066 30.769 0.00 0.00 0.00 2.57
3846 8603 9.178758 GATTTTGTGTAAACTATTCCCTCTGAT 57.821 33.333 0.00 0.00 0.00 2.90
3847 8604 7.610305 GGATTTTGTGTAAACTATTCCCTCTGA 59.390 37.037 0.00 0.00 0.00 3.27
3848 8605 7.148069 GGGATTTTGTGTAAACTATTCCCTCTG 60.148 40.741 8.09 0.00 0.00 3.35
3849 8606 6.890268 GGGATTTTGTGTAAACTATTCCCTCT 59.110 38.462 8.09 0.00 0.00 3.69
3850 8607 6.183360 CGGGATTTTGTGTAAACTATTCCCTC 60.183 42.308 11.63 0.00 0.00 4.30
3851 8608 5.650703 CGGGATTTTGTGTAAACTATTCCCT 59.349 40.000 11.63 0.00 0.00 4.20
3852 8609 5.416639 ACGGGATTTTGTGTAAACTATTCCC 59.583 40.000 6.15 6.15 0.00 3.97
3853 8610 6.505044 ACGGGATTTTGTGTAAACTATTCC 57.495 37.500 0.00 0.00 0.00 3.01
3854 8611 7.065443 AGCTACGGGATTTTGTGTAAACTATTC 59.935 37.037 0.00 0.00 0.00 1.75
3855 8612 6.882678 AGCTACGGGATTTTGTGTAAACTATT 59.117 34.615 0.00 0.00 0.00 1.73
3856 8613 6.412214 AGCTACGGGATTTTGTGTAAACTAT 58.588 36.000 0.00 0.00 0.00 2.12
3857 8614 5.797051 AGCTACGGGATTTTGTGTAAACTA 58.203 37.500 0.00 0.00 0.00 2.24
3858 8615 4.648651 AGCTACGGGATTTTGTGTAAACT 58.351 39.130 0.00 0.00 0.00 2.66
3859 8616 5.870978 TCTAGCTACGGGATTTTGTGTAAAC 59.129 40.000 0.00 0.00 0.00 2.01
3860 8617 6.040209 TCTAGCTACGGGATTTTGTGTAAA 57.960 37.500 0.00 0.00 0.00 2.01
3861 8618 5.664294 TCTAGCTACGGGATTTTGTGTAA 57.336 39.130 0.00 0.00 0.00 2.41
3862 8619 5.394883 CCTTCTAGCTACGGGATTTTGTGTA 60.395 44.000 0.00 0.00 0.00 2.90
3899 8656 0.235665 AAATGTTGCTCAGTGACGCG 59.764 50.000 3.53 3.53 0.00 6.01
3903 8660 4.556942 CAACAGAAATGTTGCTCAGTGA 57.443 40.909 8.06 0.00 41.93 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.