Multiple sequence alignment - TraesCS5B01G402900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G402900 chr5B 100.000 2645 0 0 1 2645 579589858 579592502 0.000000e+00 4885.0
1 TraesCS5B01G402900 chr5B 100.000 1890 0 0 2757 4646 579592614 579594503 0.000000e+00 3491.0
2 TraesCS5B01G402900 chr5B 96.080 1301 48 2 782 2079 579807124 579808424 0.000000e+00 2117.0
3 TraesCS5B01G402900 chr5B 92.254 1007 76 1 1081 2085 580073244 580074250 0.000000e+00 1426.0
4 TraesCS5B01G402900 chr5B 93.505 816 37 4 3729 4533 579809420 579810230 0.000000e+00 1199.0
5 TraesCS5B01G402900 chr5B 95.138 761 26 1 3729 4478 580074374 580075134 0.000000e+00 1190.0
6 TraesCS5B01G402900 chr5B 87.039 949 108 6 1082 2021 579520137 579521079 0.000000e+00 1057.0
7 TraesCS5B01G402900 chr5B 84.651 645 96 3 3852 4495 579521502 579522144 1.710000e-179 640.0
8 TraesCS5B01G402900 chr5B 100.000 301 0 0 5335 5635 579595192 579595492 1.770000e-154 556.0
9 TraesCS5B01G402900 chr5B 84.530 543 58 11 1 521 324594321 324593783 1.080000e-141 514.0
10 TraesCS5B01G402900 chr5B 98.693 153 2 0 5483 5635 147460878 147461030 7.190000e-69 272.0
11 TraesCS5B01G402900 chr5B 87.288 236 25 5 501 735 324573379 324573148 1.200000e-66 265.0
12 TraesCS5B01G402900 chr5B 97.345 113 2 1 4534 4645 664886137 664886249 2.070000e-44 191.0
13 TraesCS5B01G402900 chr5B 87.500 72 8 1 2428 2499 31871508 31871438 1.300000e-11 82.4
14 TraesCS5B01G402900 chr5B 87.500 72 8 1 2428 2499 31900867 31900797 1.300000e-11 82.4
15 TraesCS5B01G402900 chr5B 100.000 32 0 0 920 951 580073094 580073125 6.100000e-05 60.2
16 TraesCS5B01G402900 chr5D 92.582 1348 60 20 780 2091 472568203 472569546 0.000000e+00 1899.0
17 TraesCS5B01G402900 chr5D 91.975 947 67 3 1081 2021 472626835 472627778 0.000000e+00 1319.0
18 TraesCS5B01G402900 chr5D 94.981 777 28 1 3729 4494 472570418 472571194 0.000000e+00 1208.0
19 TraesCS5B01G402900 chr5D 87.671 949 105 3 1082 2024 472520403 472521345 0.000000e+00 1094.0
20 TraesCS5B01G402900 chr5D 93.544 728 35 3 3797 4513 472627795 472628521 0.000000e+00 1074.0
21 TraesCS5B01G402900 chr5D 80.499 841 162 2 1186 2025 472467707 472466868 1.320000e-180 643.0
22 TraesCS5B01G402900 chr5D 80.000 135 20 6 2411 2543 535489003 535488874 6.010000e-15 93.5
23 TraesCS5B01G402900 chr5D 96.774 31 1 0 920 950 472626685 472626715 1.000000e-02 52.8
24 TraesCS5B01G402900 chr7A 98.647 961 8 3 2773 3732 289117746 289118702 0.000000e+00 1698.0
25 TraesCS5B01G402900 chr7A 98.684 228 3 0 2412 2639 289117190 289117417 6.800000e-109 405.0
26 TraesCS5B01G402900 chr7A 96.753 154 4 1 5483 5635 558750159 558750006 7.240000e-64 255.0
27 TraesCS5B01G402900 chr7A 96.753 154 4 1 5483 5635 566096368 566096521 7.240000e-64 255.0
28 TraesCS5B01G402900 chr7A 97.297 111 2 1 4536 4645 383954811 383954921 2.680000e-43 187.0
29 TraesCS5B01G402900 chr5A 93.574 1136 49 11 971 2091 592122299 592123425 0.000000e+00 1672.0
30 TraesCS5B01G402900 chr5A 92.136 941 74 0 1081 2021 592198227 592199167 0.000000e+00 1328.0
31 TraesCS5B01G402900 chr5A 94.473 778 32 1 3729 4495 592124323 592125100 0.000000e+00 1188.0
32 TraesCS5B01G402900 chr5A 93.218 752 34 6 3797 4534 592199184 592199932 0.000000e+00 1090.0
33 TraesCS5B01G402900 chr5A 87.234 940 105 5 1082 2021 592034051 592034975 0.000000e+00 1057.0
34 TraesCS5B01G402900 chr5A 81.110 847 152 3 1186 2025 591994081 591993236 0.000000e+00 671.0
35 TraesCS5B01G402900 chr5A 94.054 185 9 2 780 962 592122057 592122241 4.300000e-71 279.0
36 TraesCS5B01G402900 chr7B 95.950 963 31 5 2772 3732 7840131 7841087 0.000000e+00 1555.0
37 TraesCS5B01G402900 chr7B 96.346 301 7 2 5335 5635 352418431 352418727 5.070000e-135 492.0
38 TraesCS5B01G402900 chr7B 98.524 271 4 0 5365 5635 49367829 49367559 3.950000e-131 479.0
39 TraesCS5B01G402900 chr7B 95.872 218 8 1 2410 2626 7839778 7839995 8.980000e-93 351.0
40 TraesCS5B01G402900 chr7B 98.246 114 2 0 4532 4645 49368589 49368476 3.440000e-47 200.0
41 TraesCS5B01G402900 chr7B 93.333 90 3 3 5336 5423 164153414 164153502 4.580000e-26 130.0
42 TraesCS5B01G402900 chr7D 86.171 969 96 28 2773 3731 537239583 537240523 0.000000e+00 1013.0
43 TraesCS5B01G402900 chr7D 82.239 259 39 6 3125 3382 23067620 23067368 3.420000e-52 217.0
44 TraesCS5B01G402900 chr7D 82.377 244 21 10 2409 2642 537239299 537239530 5.760000e-45 193.0
45 TraesCS5B01G402900 chr1D 81.957 981 103 33 2775 3731 6229475 6230405 0.000000e+00 763.0
46 TraesCS5B01G402900 chr1D 93.846 65 4 0 3669 3733 307825240 307825304 1.290000e-16 99.0
47 TraesCS5B01G402900 chr1A 80.508 985 113 32 2775 3731 7318483 7319416 0.000000e+00 682.0
48 TraesCS5B01G402900 chr1A 83.105 219 29 5 2411 2621 7318251 7318469 5.760000e-45 193.0
49 TraesCS5B01G402900 chr1A 95.575 113 5 0 4533 4645 27382884 27382772 1.250000e-41 182.0
50 TraesCS5B01G402900 chr1A 86.517 89 11 1 2411 2499 565749667 565749754 4.650000e-16 97.1
51 TraesCS5B01G402900 chr2B 82.969 458 57 9 69 505 512566378 512565921 1.470000e-105 394.0
52 TraesCS5B01G402900 chr2B 99.057 106 1 0 4540 4645 596904629 596904734 2.070000e-44 191.0
53 TraesCS5B01G402900 chr2B 87.912 91 10 1 2409 2499 778028296 778028207 7.720000e-19 106.0
54 TraesCS5B01G402900 chr2B 86.813 91 11 1 2409 2499 777966608 777966519 3.590000e-17 100.0
55 TraesCS5B01G402900 chr2B 84.091 88 13 1 3645 3732 476403913 476403827 3.620000e-12 84.2
56 TraesCS5B01G402900 chr6B 84.591 318 43 4 1710 2021 650651148 650651465 1.520000e-80 311.0
57 TraesCS5B01G402900 chr6B 85.714 91 10 3 3644 3732 34198392 34198303 6.010000e-15 93.5
58 TraesCS5B01G402900 chr3A 82.540 315 43 5 1710 2024 497760016 497759714 3.350000e-67 267.0
59 TraesCS5B01G402900 chr3A 96.753 154 4 1 5483 5635 83767700 83767853 7.240000e-64 255.0
60 TraesCS5B01G402900 chr3A 99.057 106 1 0 4540 4645 610049415 610049520 2.070000e-44 191.0
61 TraesCS5B01G402900 chr2A 97.386 153 4 0 5483 5635 235339086 235339238 1.560000e-65 261.0
62 TraesCS5B01G402900 chr2D 96.732 153 5 0 5483 5635 432016740 432016588 7.240000e-64 255.0
63 TraesCS5B01G402900 chr2D 75.719 313 67 9 2 309 310603938 310603630 1.260000e-31 148.0
64 TraesCS5B01G402900 chr2D 85.542 83 10 2 3643 3724 523159544 523159463 1.010000e-12 86.1
65 TraesCS5B01G402900 chr1B 96.732 153 5 0 5483 5635 96458756 96458604 7.240000e-64 255.0
66 TraesCS5B01G402900 chr1B 97.345 113 1 1 4533 4645 535804568 535804678 2.070000e-44 191.0
67 TraesCS5B01G402900 chr1B 99.048 105 1 0 4541 4645 75302741 75302845 7.450000e-44 189.0
68 TraesCS5B01G402900 chr1B 88.636 88 9 1 2412 2499 629179882 629179968 7.720000e-19 106.0
69 TraesCS5B01G402900 chr1B 88.889 54 6 0 5335 5388 95237310 95237363 3.640000e-07 67.6
70 TraesCS5B01G402900 chr3B 86.294 197 23 4 501 695 505039821 505039627 1.590000e-50 211.0
71 TraesCS5B01G402900 chr3B 91.045 67 5 1 3669 3734 823097387 823097321 7.780000e-14 89.8
72 TraesCS5B01G402900 chr4B 99.048 105 1 0 4541 4645 291888422 291888526 7.450000e-44 189.0
73 TraesCS5B01G402900 chrUn 82.383 193 30 3 3122 3314 333430673 333430861 1.260000e-36 165.0
74 TraesCS5B01G402900 chr4D 72.910 299 71 10 17 310 220331672 220331965 1.670000e-15 95.3
75 TraesCS5B01G402900 chr6D 83.908 87 14 0 3645 3731 141789623 141789709 3.620000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G402900 chr5B 579589858 579595492 5634 False 2977.333333 4885 100.000000 1 5635 3 chr5B.!!$F4 5634
1 TraesCS5B01G402900 chr5B 579807124 579810230 3106 False 1658.000000 2117 94.792500 782 4533 2 chr5B.!!$F5 3751
2 TraesCS5B01G402900 chr5B 580073094 580075134 2040 False 892.066667 1426 95.797333 920 4478 3 chr5B.!!$F6 3558
3 TraesCS5B01G402900 chr5B 579520137 579522144 2007 False 848.500000 1057 85.845000 1082 4495 2 chr5B.!!$F3 3413
4 TraesCS5B01G402900 chr5B 324593783 324594321 538 True 514.000000 514 84.530000 1 521 1 chr5B.!!$R4 520
5 TraesCS5B01G402900 chr5D 472568203 472571194 2991 False 1553.500000 1899 93.781500 780 4494 2 chr5D.!!$F2 3714
6 TraesCS5B01G402900 chr5D 472520403 472521345 942 False 1094.000000 1094 87.671000 1082 2024 1 chr5D.!!$F1 942
7 TraesCS5B01G402900 chr5D 472626685 472628521 1836 False 815.266667 1319 94.097667 920 4513 3 chr5D.!!$F3 3593
8 TraesCS5B01G402900 chr5D 472466868 472467707 839 True 643.000000 643 80.499000 1186 2025 1 chr5D.!!$R1 839
9 TraesCS5B01G402900 chr7A 289117190 289118702 1512 False 1051.500000 1698 98.665500 2412 3732 2 chr7A.!!$F3 1320
10 TraesCS5B01G402900 chr5A 592198227 592199932 1705 False 1209.000000 1328 92.677000 1081 4534 2 chr5A.!!$F3 3453
11 TraesCS5B01G402900 chr5A 592034051 592034975 924 False 1057.000000 1057 87.234000 1082 2021 1 chr5A.!!$F1 939
12 TraesCS5B01G402900 chr5A 592122057 592125100 3043 False 1046.333333 1672 94.033667 780 4495 3 chr5A.!!$F2 3715
13 TraesCS5B01G402900 chr5A 591993236 591994081 845 True 671.000000 671 81.110000 1186 2025 1 chr5A.!!$R1 839
14 TraesCS5B01G402900 chr7B 7839778 7841087 1309 False 953.000000 1555 95.911000 2410 3732 2 chr7B.!!$F3 1322
15 TraesCS5B01G402900 chr7B 49367559 49368589 1030 True 339.500000 479 98.385000 4532 5635 2 chr7B.!!$R1 1103
16 TraesCS5B01G402900 chr7D 537239299 537240523 1224 False 603.000000 1013 84.274000 2409 3731 2 chr7D.!!$F1 1322
17 TraesCS5B01G402900 chr1D 6229475 6230405 930 False 763.000000 763 81.957000 2775 3731 1 chr1D.!!$F1 956
18 TraesCS5B01G402900 chr1A 7318251 7319416 1165 False 437.500000 682 81.806500 2411 3731 2 chr1A.!!$F2 1320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 708 0.104120 CATGGGCGTCGTGATCCTAA 59.896 55.0 0.00 0.00 34.35 2.69 F
761 782 0.256752 TCCTACCGGATCCAGTTCGA 59.743 55.0 9.46 2.72 33.30 3.71 F
762 783 0.669077 CCTACCGGATCCAGTTCGAG 59.331 60.0 9.46 0.83 0.00 4.04 F
2401 3610 0.103208 CGATTCTGTCCCTTCTCCCG 59.897 60.0 0.00 0.00 0.00 5.14 F
2406 3615 0.466124 CTGTCCCTTCTCCCGAATCC 59.534 60.0 0.00 0.00 0.00 3.01 F
2524 3735 0.678048 ATCCTTTCACCTGGAAGCGC 60.678 55.0 0.00 0.00 36.72 5.92 F
3735 5200 0.886490 CGCCTATCAGTGCCCAATCC 60.886 60.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 3457 0.308684 CGGCGTTATCTACCGTGCTA 59.691 55.000 0.00 0.00 42.01 3.49 R
2362 3536 1.037493 TCGGTGTACTCACAACAGCT 58.963 50.000 0.00 0.00 42.97 4.24 R
2408 3617 2.081462 CGGTTTCAAGCGTTTCCCTAT 58.919 47.619 2.98 0.00 44.15 2.57 R
3821 5286 0.038618 TTGGTGAGATCGTGACGTGG 60.039 55.000 4.40 0.00 0.00 4.94 R
4395 5873 1.553690 CGACCTTGGGGATGGTGAGT 61.554 60.000 0.00 0.00 36.59 3.41 R
4485 5963 5.013568 CATTATGATGCCTTGCCAAGAAA 57.986 39.130 5.89 0.00 0.00 2.52 R
5473 6952 0.179111 TAATCAGAGTCGGCTTGGCG 60.179 55.000 10.34 10.34 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.266372 TGTGGTACGAATGGGGCG 59.734 61.111 0.00 0.00 0.00 6.13
21 22 1.078988 GGTACGAATGGGGCGTTCA 60.079 57.895 0.00 0.00 42.62 3.18
51 52 0.537653 TTTGTGGAGACGTGTGTGGA 59.462 50.000 0.00 0.00 0.00 4.02
60 61 2.936498 AGACGTGTGTGGACAAGAAAAG 59.064 45.455 0.00 0.00 35.36 2.27
63 64 1.021202 TGTGTGGACAAGAAAAGCGG 58.979 50.000 0.00 0.00 0.00 5.52
64 65 0.310854 GTGTGGACAAGAAAAGCGGG 59.689 55.000 0.00 0.00 0.00 6.13
66 67 1.202879 TGTGGACAAGAAAAGCGGGAT 60.203 47.619 0.00 0.00 0.00 3.85
87 88 1.089920 CAATGCCGTTGGAGGAGAAG 58.910 55.000 0.00 0.00 34.06 2.85
90 91 0.762418 TGCCGTTGGAGGAGAAGAAA 59.238 50.000 0.00 0.00 0.00 2.52
92 93 1.270893 GCCGTTGGAGGAGAAGAAAGT 60.271 52.381 0.00 0.00 0.00 2.66
102 103 4.670765 AGGAGAAGAAAGTACGTAGGGAA 58.329 43.478 0.00 0.00 0.00 3.97
105 106 5.360429 GGAGAAGAAAGTACGTAGGGAAGAT 59.640 44.000 0.00 0.00 0.00 2.40
114 115 9.901172 AAAGTACGTAGGGAAGATTTAATGAAT 57.099 29.630 0.00 0.00 0.00 2.57
117 118 9.321562 GTACGTAGGGAAGATTTAATGAATTCA 57.678 33.333 11.26 11.26 0.00 2.57
120 121 7.282224 CGTAGGGAAGATTTAATGAATTCACCA 59.718 37.037 11.07 0.00 0.00 4.17
155 156 5.503662 TGCATAGCCTTGATAACAACATG 57.496 39.130 0.00 0.00 32.27 3.21
156 157 5.192176 TGCATAGCCTTGATAACAACATGA 58.808 37.500 0.00 0.00 32.27 3.07
175 176 5.177511 ACATGATACTGAGTGTGAACAAACG 59.822 40.000 0.00 0.00 0.00 3.60
179 180 3.331150 ACTGAGTGTGAACAAACGTGAA 58.669 40.909 0.00 0.00 0.00 3.18
183 184 4.092821 TGAGTGTGAACAAACGTGAAGAAG 59.907 41.667 0.00 0.00 0.00 2.85
194 195 3.931824 ACGTGAAGAAGCGTTGTAAAAC 58.068 40.909 0.00 0.00 38.21 2.43
213 214 2.816411 ACGAGGGAGGTGTCAGATTTA 58.184 47.619 0.00 0.00 0.00 1.40
216 217 3.493350 CGAGGGAGGTGTCAGATTTATGG 60.493 52.174 0.00 0.00 0.00 2.74
221 222 1.331756 GGTGTCAGATTTATGGCGCAG 59.668 52.381 10.83 0.00 37.03 5.18
234 235 1.078143 GCGCAGAGGAAAGGACCAT 60.078 57.895 0.30 0.00 0.00 3.55
282 283 9.561069 AACACAACAAGATAGTATTGATATCCC 57.439 33.333 0.00 0.00 31.22 3.85
317 327 4.794311 TGGGTGATGTCCAATGTATGAT 57.206 40.909 0.00 0.00 0.00 2.45
320 330 6.475504 TGGGTGATGTCCAATGTATGATATC 58.524 40.000 0.00 0.00 0.00 1.63
321 331 6.044171 TGGGTGATGTCCAATGTATGATATCA 59.956 38.462 8.10 8.10 0.00 2.15
329 339 5.716228 TCCAATGTATGATATCAAATGGGGC 59.284 40.000 9.99 0.00 0.00 5.80
337 347 6.310764 TGATATCAAATGGGGCAAATGTTT 57.689 33.333 1.98 0.00 0.00 2.83
339 349 6.598457 TGATATCAAATGGGGCAAATGTTTTG 59.402 34.615 1.98 0.00 0.00 2.44
361 371 7.654022 TTGCTAAAAGAAGAAGAAAAGGGAA 57.346 32.000 0.00 0.00 0.00 3.97
363 373 6.265422 TGCTAAAAGAAGAAGAAAAGGGAAGG 59.735 38.462 0.00 0.00 0.00 3.46
364 374 5.537300 AAAAGAAGAAGAAAAGGGAAGGC 57.463 39.130 0.00 0.00 0.00 4.35
365 375 2.784347 AGAAGAAGAAAAGGGAAGGCG 58.216 47.619 0.00 0.00 0.00 5.52
366 376 2.372172 AGAAGAAGAAAAGGGAAGGCGA 59.628 45.455 0.00 0.00 0.00 5.54
381 402 3.506096 CGAGGCTGGCATGCACTG 61.506 66.667 21.36 13.46 34.04 3.66
410 431 4.094887 AGAGTGTGCGGCTTTATTACAATG 59.905 41.667 0.00 0.00 0.00 2.82
412 433 2.425312 TGTGCGGCTTTATTACAATGGG 59.575 45.455 0.00 0.00 0.00 4.00
420 441 6.350612 CGGCTTTATTACAATGGGGAAGAAAA 60.351 38.462 0.00 0.00 0.00 2.29
436 457 5.177696 GGAAGAAAATCGCGAGCTAATACAT 59.822 40.000 16.66 0.00 0.00 2.29
449 470 6.239064 CGAGCTAATACATAAAGAGAGTGGGT 60.239 42.308 0.00 0.00 0.00 4.51
453 474 1.066143 ACATAAAGAGAGTGGGTGCCG 60.066 52.381 0.00 0.00 0.00 5.69
477 498 4.227134 CCGAGGGGACGATGCCAG 62.227 72.222 0.00 0.00 34.06 4.85
478 499 3.147595 CGAGGGGACGATGCCAGA 61.148 66.667 0.00 0.00 35.09 3.86
479 500 2.721167 CGAGGGGACGATGCCAGAA 61.721 63.158 0.00 0.00 35.09 3.02
480 501 1.144936 GAGGGGACGATGCCAGAAG 59.855 63.158 0.00 0.00 0.00 2.85
481 502 1.613630 AGGGGACGATGCCAGAAGT 60.614 57.895 0.00 0.00 0.00 3.01
482 503 1.153349 GGGGACGATGCCAGAAGTC 60.153 63.158 0.00 0.00 0.00 3.01
483 504 4.522971 GGACGATGCCAGAAGTCC 57.477 61.111 0.00 0.00 45.07 3.85
484 505 1.519455 GGACGATGCCAGAAGTCCG 60.519 63.158 0.00 0.00 42.88 4.79
485 506 1.511305 GACGATGCCAGAAGTCCGA 59.489 57.895 0.00 0.00 0.00 4.55
486 507 0.526524 GACGATGCCAGAAGTCCGAG 60.527 60.000 0.00 0.00 0.00 4.63
487 508 0.965866 ACGATGCCAGAAGTCCGAGA 60.966 55.000 0.00 0.00 0.00 4.04
488 509 0.173481 CGATGCCAGAAGTCCGAGAA 59.827 55.000 0.00 0.00 0.00 2.87
489 510 1.800655 CGATGCCAGAAGTCCGAGAAG 60.801 57.143 0.00 0.00 0.00 2.85
490 511 1.478510 GATGCCAGAAGTCCGAGAAGA 59.521 52.381 0.00 0.00 0.00 2.87
491 512 0.603569 TGCCAGAAGTCCGAGAAGAC 59.396 55.000 0.00 0.00 37.01 3.01
492 513 0.108567 GCCAGAAGTCCGAGAAGACC 60.109 60.000 0.00 0.00 37.49 3.85
493 514 0.171455 CCAGAAGTCCGAGAAGACCG 59.829 60.000 0.00 0.00 37.49 4.79
494 515 0.882474 CAGAAGTCCGAGAAGACCGT 59.118 55.000 0.00 0.00 37.49 4.83
495 516 0.882474 AGAAGTCCGAGAAGACCGTG 59.118 55.000 0.00 0.00 37.49 4.94
496 517 0.109226 GAAGTCCGAGAAGACCGTGG 60.109 60.000 0.00 0.00 37.49 4.94
497 518 2.126031 GTCCGAGAAGACCGTGGC 60.126 66.667 0.00 0.00 0.00 5.01
498 519 3.744719 TCCGAGAAGACCGTGGCG 61.745 66.667 0.00 0.00 0.00 5.69
499 520 3.744719 CCGAGAAGACCGTGGCGA 61.745 66.667 0.00 0.00 0.00 5.54
500 521 2.202492 CGAGAAGACCGTGGCGAG 60.202 66.667 0.00 0.00 0.00 5.03
501 522 2.182030 GAGAAGACCGTGGCGAGG 59.818 66.667 0.00 0.00 0.00 4.63
502 523 2.282958 AGAAGACCGTGGCGAGGA 60.283 61.111 5.02 0.00 0.00 3.71
503 524 2.182030 GAAGACCGTGGCGAGGAG 59.818 66.667 5.02 0.00 0.00 3.69
531 552 3.003173 CGGAGGAGGGAGTGCCAA 61.003 66.667 2.50 0.00 35.15 4.52
532 553 2.993853 GGAGGAGGGAGTGCCAAG 59.006 66.667 2.50 0.00 35.15 3.61
533 554 2.674220 GGAGGAGGGAGTGCCAAGG 61.674 68.421 2.50 0.00 35.15 3.61
534 555 1.920835 GAGGAGGGAGTGCCAAGGT 60.921 63.158 2.50 0.00 35.15 3.50
535 556 1.904990 GAGGAGGGAGTGCCAAGGTC 61.905 65.000 2.50 0.00 35.15 3.85
536 557 2.266055 GAGGGAGTGCCAAGGTCG 59.734 66.667 2.50 0.00 35.15 4.79
537 558 2.203788 AGGGAGTGCCAAGGTCGA 60.204 61.111 2.50 0.00 35.15 4.20
538 559 2.047179 GGGAGTGCCAAGGTCGAC 60.047 66.667 7.13 7.13 35.15 4.20
539 560 2.047179 GGAGTGCCAAGGTCGACC 60.047 66.667 27.67 27.67 0.00 4.79
540 561 2.741092 GAGTGCCAAGGTCGACCA 59.259 61.111 35.00 12.66 38.89 4.02
541 562 1.296715 GAGTGCCAAGGTCGACCAT 59.703 57.895 35.00 22.65 38.89 3.55
542 563 1.003355 AGTGCCAAGGTCGACCATG 60.003 57.895 35.00 31.67 38.89 3.66
545 566 4.301505 CCAAGGTCGACCATGGTG 57.698 61.111 38.81 27.36 46.80 4.17
546 567 1.377202 CCAAGGTCGACCATGGTGG 60.377 63.158 38.81 30.92 46.80 4.61
547 568 1.676968 CAAGGTCGACCATGGTGGA 59.323 57.895 35.00 24.77 40.96 4.02
548 569 0.391661 CAAGGTCGACCATGGTGGAG 60.392 60.000 35.00 16.15 40.96 3.86
549 570 0.544357 AAGGTCGACCATGGTGGAGA 60.544 55.000 35.00 18.09 40.96 3.71
550 571 0.972983 AGGTCGACCATGGTGGAGAG 60.973 60.000 35.00 11.40 40.96 3.20
551 572 1.517832 GTCGACCATGGTGGAGAGG 59.482 63.158 27.88 7.88 40.96 3.69
552 573 2.187946 CGACCATGGTGGAGAGGC 59.812 66.667 25.52 4.57 40.96 4.70
553 574 2.592308 GACCATGGTGGAGAGGCC 59.408 66.667 25.52 0.22 40.96 5.19
554 575 1.997874 GACCATGGTGGAGAGGCCT 60.998 63.158 25.52 3.86 40.96 5.19
555 576 2.262774 GACCATGGTGGAGAGGCCTG 62.263 65.000 25.52 0.00 40.96 4.85
556 577 2.593978 CATGGTGGAGAGGCCTGG 59.406 66.667 12.00 0.00 37.63 4.45
557 578 2.125912 ATGGTGGAGAGGCCTGGT 59.874 61.111 12.00 0.00 37.63 4.00
558 579 0.982852 CATGGTGGAGAGGCCTGGTA 60.983 60.000 12.00 0.00 37.63 3.25
559 580 0.253160 ATGGTGGAGAGGCCTGGTAA 60.253 55.000 12.00 0.00 37.63 2.85
560 581 1.198759 TGGTGGAGAGGCCTGGTAAC 61.199 60.000 12.00 2.91 37.63 2.50
561 582 0.910088 GGTGGAGAGGCCTGGTAACT 60.910 60.000 12.00 0.00 37.63 2.24
562 583 0.250513 GTGGAGAGGCCTGGTAACTG 59.749 60.000 12.00 0.00 37.63 3.16
563 584 0.116342 TGGAGAGGCCTGGTAACTGA 59.884 55.000 12.00 0.00 37.83 3.41
564 585 1.273838 TGGAGAGGCCTGGTAACTGAT 60.274 52.381 12.00 0.00 37.83 2.90
565 586 2.023404 TGGAGAGGCCTGGTAACTGATA 60.023 50.000 12.00 0.00 37.83 2.15
566 587 2.365941 GGAGAGGCCTGGTAACTGATAC 59.634 54.545 12.00 0.00 37.83 2.24
579 600 6.969828 GTAACTGATACCAAGTTGGAAGAG 57.030 41.667 28.80 18.20 40.96 2.85
580 601 5.825593 AACTGATACCAAGTTGGAAGAGA 57.174 39.130 28.80 8.12 40.96 3.10
581 602 6.380079 AACTGATACCAAGTTGGAAGAGAT 57.620 37.500 28.80 12.30 40.96 2.75
582 603 7.496346 AACTGATACCAAGTTGGAAGAGATA 57.504 36.000 28.80 9.42 40.96 1.98
583 604 7.496346 ACTGATACCAAGTTGGAAGAGATAA 57.504 36.000 28.80 5.80 40.96 1.75
584 605 7.918076 ACTGATACCAAGTTGGAAGAGATAAA 58.082 34.615 28.80 1.98 40.96 1.40
585 606 7.824779 ACTGATACCAAGTTGGAAGAGATAAAC 59.175 37.037 28.80 8.29 40.96 2.01
586 607 7.918076 TGATACCAAGTTGGAAGAGATAAACT 58.082 34.615 28.80 3.71 40.96 2.66
587 608 8.041323 TGATACCAAGTTGGAAGAGATAAACTC 58.959 37.037 28.80 4.81 40.96 3.01
588 609 6.187727 ACCAAGTTGGAAGAGATAAACTCA 57.812 37.500 28.80 0.00 43.31 3.41
589 610 6.601332 ACCAAGTTGGAAGAGATAAACTCAA 58.399 36.000 28.80 0.00 43.31 3.02
590 611 7.234355 ACCAAGTTGGAAGAGATAAACTCAAT 58.766 34.615 28.80 0.00 43.31 2.57
591 612 7.725844 ACCAAGTTGGAAGAGATAAACTCAATT 59.274 33.333 28.80 0.00 43.31 2.32
592 613 8.025445 CCAAGTTGGAAGAGATAAACTCAATTG 58.975 37.037 17.60 0.00 43.31 2.32
608 629 9.985730 AAACTCAATTGATGTTATTGTTGACAT 57.014 25.926 8.96 0.00 39.09 3.06
617 638 8.547894 TGATGTTATTGTTGACATAATACGAGC 58.452 33.333 0.00 0.00 36.67 5.03
618 639 7.241663 TGTTATTGTTGACATAATACGAGCC 57.758 36.000 0.00 0.00 0.00 4.70
619 640 7.045416 TGTTATTGTTGACATAATACGAGCCT 58.955 34.615 0.00 0.00 0.00 4.58
620 641 7.223971 TGTTATTGTTGACATAATACGAGCCTC 59.776 37.037 0.00 0.00 0.00 4.70
621 642 4.729227 TGTTGACATAATACGAGCCTCA 57.271 40.909 0.00 0.00 0.00 3.86
622 643 5.276461 TGTTGACATAATACGAGCCTCAT 57.724 39.130 0.00 0.00 0.00 2.90
623 644 6.399639 TGTTGACATAATACGAGCCTCATA 57.600 37.500 0.00 0.00 0.00 2.15
624 645 6.993079 TGTTGACATAATACGAGCCTCATAT 58.007 36.000 0.00 0.00 0.00 1.78
625 646 8.117813 TGTTGACATAATACGAGCCTCATATA 57.882 34.615 0.00 0.00 0.00 0.86
626 647 8.027189 TGTTGACATAATACGAGCCTCATATAC 58.973 37.037 0.00 0.00 0.00 1.47
627 648 7.696992 TGACATAATACGAGCCTCATATACA 57.303 36.000 0.00 0.00 0.00 2.29
628 649 7.762382 TGACATAATACGAGCCTCATATACAG 58.238 38.462 0.00 0.00 0.00 2.74
629 650 7.610305 TGACATAATACGAGCCTCATATACAGA 59.390 37.037 0.00 0.00 0.00 3.41
630 651 7.990917 ACATAATACGAGCCTCATATACAGAG 58.009 38.462 0.00 0.00 0.00 3.35
631 652 7.829706 ACATAATACGAGCCTCATATACAGAGA 59.170 37.037 5.76 0.00 35.09 3.10
632 653 6.751514 AATACGAGCCTCATATACAGAGAG 57.248 41.667 5.76 0.00 35.09 3.20
639 660 4.746466 CCTCATATACAGAGAGGGGAACT 58.254 47.826 5.76 0.00 44.10 3.01
640 661 4.526262 CCTCATATACAGAGAGGGGAACTG 59.474 50.000 5.76 0.00 44.10 3.16
641 662 5.389520 CTCATATACAGAGAGGGGAACTGA 58.610 45.833 0.00 0.00 35.09 3.41
642 663 5.777449 TCATATACAGAGAGGGGAACTGAA 58.223 41.667 0.00 0.00 35.85 3.02
643 664 5.598830 TCATATACAGAGAGGGGAACTGAAC 59.401 44.000 0.00 0.00 35.85 3.18
644 665 0.969894 ACAGAGAGGGGAACTGAACG 59.030 55.000 0.00 0.00 35.85 3.95
645 666 0.390472 CAGAGAGGGGAACTGAACGC 60.390 60.000 0.00 0.00 34.07 4.84
646 667 1.079057 GAGAGGGGAACTGAACGCC 60.079 63.158 0.00 0.00 40.04 5.68
647 668 2.046217 GAGGGGAACTGAACGCCC 60.046 66.667 0.00 0.00 40.50 6.13
648 669 2.529389 AGGGGAACTGAACGCCCT 60.529 61.111 0.00 0.00 41.72 5.19
649 670 1.229400 AGGGGAACTGAACGCCCTA 60.229 57.895 0.00 0.00 41.72 3.53
650 671 1.078637 GGGGAACTGAACGCCCTAC 60.079 63.158 0.00 0.00 41.72 3.18
651 672 1.078637 GGGAACTGAACGCCCTACC 60.079 63.158 0.00 0.00 38.85 3.18
652 673 1.675219 GGAACTGAACGCCCTACCA 59.325 57.895 0.00 0.00 0.00 3.25
653 674 0.391263 GGAACTGAACGCCCTACCAG 60.391 60.000 0.00 0.00 0.00 4.00
654 675 0.606604 GAACTGAACGCCCTACCAGA 59.393 55.000 0.00 0.00 0.00 3.86
655 676 0.608640 AACTGAACGCCCTACCAGAG 59.391 55.000 0.00 0.00 0.00 3.35
656 677 0.542232 ACTGAACGCCCTACCAGAGT 60.542 55.000 0.00 0.00 0.00 3.24
657 678 0.108615 CTGAACGCCCTACCAGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
658 679 1.218316 GAACGCCCTACCAGAGTGG 59.782 63.158 0.00 0.00 45.02 4.00
659 680 2.854187 GAACGCCCTACCAGAGTGGC 62.854 65.000 0.00 0.00 42.67 5.01
660 681 3.390521 CGCCCTACCAGAGTGGCA 61.391 66.667 0.00 0.00 42.67 4.92
661 682 2.269241 GCCCTACCAGAGTGGCAC 59.731 66.667 10.29 10.29 42.67 5.01
662 683 2.579201 CCCTACCAGAGTGGCACG 59.421 66.667 12.71 0.00 42.67 5.34
663 684 2.125512 CCTACCAGAGTGGCACGC 60.126 66.667 13.85 13.85 42.67 5.34
664 685 2.656646 CTACCAGAGTGGCACGCA 59.343 61.111 23.18 1.49 42.67 5.24
665 686 1.446792 CTACCAGAGTGGCACGCAG 60.447 63.158 23.18 15.15 42.67 5.18
666 687 2.842394 CTACCAGAGTGGCACGCAGG 62.842 65.000 26.66 26.66 42.67 4.85
667 688 4.320456 CCAGAGTGGCACGCAGGT 62.320 66.667 23.18 0.00 44.14 4.00
668 689 2.740055 CAGAGTGGCACGCAGGTC 60.740 66.667 23.18 9.80 44.14 3.85
669 690 3.233980 AGAGTGGCACGCAGGTCA 61.234 61.111 23.18 0.00 44.14 4.02
670 691 2.046892 GAGTGGCACGCAGGTCAT 60.047 61.111 16.77 0.00 44.14 3.06
671 692 2.359107 AGTGGCACGCAGGTCATG 60.359 61.111 12.71 0.00 44.14 3.07
672 693 3.434319 GTGGCACGCAGGTCATGG 61.434 66.667 0.00 0.00 39.55 3.66
673 694 4.720902 TGGCACGCAGGTCATGGG 62.721 66.667 0.00 0.00 46.92 4.00
679 700 4.760047 GCAGGTCATGGGCGTCGT 62.760 66.667 0.00 0.00 0.00 4.34
680 701 2.815211 CAGGTCATGGGCGTCGTG 60.815 66.667 0.00 0.00 0.00 4.35
681 702 2.994995 AGGTCATGGGCGTCGTGA 60.995 61.111 0.00 0.00 38.94 4.35
682 703 2.186903 GGTCATGGGCGTCGTGAT 59.813 61.111 6.20 0.00 42.68 3.06
683 704 1.883084 GGTCATGGGCGTCGTGATC 60.883 63.158 6.20 2.77 42.68 2.92
684 705 1.883084 GTCATGGGCGTCGTGATCC 60.883 63.158 6.20 0.00 42.68 3.36
685 706 2.058001 TCATGGGCGTCGTGATCCT 61.058 57.895 0.00 0.00 36.54 3.24
686 707 0.753848 TCATGGGCGTCGTGATCCTA 60.754 55.000 0.00 0.00 36.54 2.94
687 708 0.104120 CATGGGCGTCGTGATCCTAA 59.896 55.000 0.00 0.00 34.35 2.69
688 709 0.828022 ATGGGCGTCGTGATCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
689 710 0.828022 TGGGCGTCGTGATCCTAAAT 59.172 50.000 0.00 0.00 0.00 1.40
690 711 2.033372 TGGGCGTCGTGATCCTAAATA 58.967 47.619 0.00 0.00 0.00 1.40
691 712 2.223876 TGGGCGTCGTGATCCTAAATAC 60.224 50.000 0.00 0.00 0.00 1.89
692 713 2.223876 GGGCGTCGTGATCCTAAATACA 60.224 50.000 0.00 0.00 0.00 2.29
693 714 3.450578 GGCGTCGTGATCCTAAATACAA 58.549 45.455 0.00 0.00 0.00 2.41
694 715 3.489785 GGCGTCGTGATCCTAAATACAAG 59.510 47.826 0.00 0.00 0.00 3.16
695 716 4.357142 GCGTCGTGATCCTAAATACAAGA 58.643 43.478 0.00 0.00 0.00 3.02
696 717 4.802039 GCGTCGTGATCCTAAATACAAGAA 59.198 41.667 0.00 0.00 0.00 2.52
697 718 5.290158 GCGTCGTGATCCTAAATACAAGAAA 59.710 40.000 0.00 0.00 0.00 2.52
698 719 6.183360 GCGTCGTGATCCTAAATACAAGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
699 720 7.391786 CGTCGTGATCCTAAATACAAGAAAAG 58.608 38.462 0.00 0.00 0.00 2.27
700 721 7.063074 CGTCGTGATCCTAAATACAAGAAAAGT 59.937 37.037 0.00 0.00 0.00 2.66
701 722 9.362539 GTCGTGATCCTAAATACAAGAAAAGTA 57.637 33.333 0.00 0.00 0.00 2.24
713 734 8.792830 ATACAAGAAAAGTATACATGCACAGT 57.207 30.769 5.50 0.00 30.75 3.55
714 735 7.510549 ACAAGAAAAGTATACATGCACAGTT 57.489 32.000 5.50 0.00 0.00 3.16
715 736 8.615878 ACAAGAAAAGTATACATGCACAGTTA 57.384 30.769 5.50 0.00 0.00 2.24
716 737 9.062524 ACAAGAAAAGTATACATGCACAGTTAA 57.937 29.630 5.50 0.00 0.00 2.01
717 738 9.329913 CAAGAAAAGTATACATGCACAGTTAAC 57.670 33.333 5.50 0.00 0.00 2.01
718 739 7.739295 AGAAAAGTATACATGCACAGTTAACG 58.261 34.615 5.50 0.00 0.00 3.18
719 740 7.386848 AGAAAAGTATACATGCACAGTTAACGT 59.613 33.333 5.50 0.00 0.00 3.99
720 741 7.429636 AAAGTATACATGCACAGTTAACGTT 57.570 32.000 5.88 5.88 0.00 3.99
721 742 6.403333 AGTATACATGCACAGTTAACGTTG 57.597 37.500 11.99 0.00 0.00 4.10
722 743 5.929992 AGTATACATGCACAGTTAACGTTGT 59.070 36.000 11.99 0.00 0.00 3.32
723 744 7.092079 AGTATACATGCACAGTTAACGTTGTA 58.908 34.615 11.99 1.21 0.00 2.41
724 745 6.978343 ATACATGCACAGTTAACGTTGTAT 57.022 33.333 11.99 3.75 0.00 2.29
725 746 9.022915 GTATACATGCACAGTTAACGTTGTATA 57.977 33.333 11.99 17.74 32.82 1.47
726 747 6.160664 ACATGCACAGTTAACGTTGTATAC 57.839 37.500 11.99 3.94 0.00 1.47
727 748 5.697178 ACATGCACAGTTAACGTTGTATACA 59.303 36.000 11.99 0.08 0.00 2.29
728 749 6.203145 ACATGCACAGTTAACGTTGTATACAA 59.797 34.615 14.35 14.35 0.00 2.41
729 750 6.788684 TGCACAGTTAACGTTGTATACAAT 57.211 33.333 20.72 8.34 38.24 2.71
730 751 7.192148 TGCACAGTTAACGTTGTATACAATT 57.808 32.000 20.72 14.21 38.24 2.32
731 752 7.292292 TGCACAGTTAACGTTGTATACAATTC 58.708 34.615 20.72 8.63 38.24 2.17
732 753 7.041984 TGCACAGTTAACGTTGTATACAATTCA 60.042 33.333 20.72 2.10 38.24 2.57
733 754 7.799447 GCACAGTTAACGTTGTATACAATTCAA 59.201 33.333 20.72 10.26 38.24 2.69
734 755 9.098746 CACAGTTAACGTTGTATACAATTCAAC 57.901 33.333 20.72 19.12 38.24 3.18
743 764 8.389586 GTTGTATACAATTCAACGGGAAAATC 57.610 34.615 20.72 0.00 39.39 2.17
744 765 7.090953 TGTATACAATTCAACGGGAAAATCC 57.909 36.000 2.20 0.00 39.39 3.01
745 766 6.887545 TGTATACAATTCAACGGGAAAATCCT 59.112 34.615 2.20 0.00 39.39 3.24
746 767 8.047911 TGTATACAATTCAACGGGAAAATCCTA 58.952 33.333 2.20 0.00 39.39 2.94
747 768 5.638596 ACAATTCAACGGGAAAATCCTAC 57.361 39.130 0.00 0.00 39.39 3.18
748 769 4.461431 ACAATTCAACGGGAAAATCCTACC 59.539 41.667 0.00 0.00 39.39 3.18
760 781 2.803203 TCCTACCGGATCCAGTTCG 58.197 57.895 9.46 1.49 33.30 3.95
761 782 0.256752 TCCTACCGGATCCAGTTCGA 59.743 55.000 9.46 2.72 33.30 3.71
762 783 0.669077 CCTACCGGATCCAGTTCGAG 59.331 60.000 9.46 0.83 0.00 4.04
763 784 1.390565 CTACCGGATCCAGTTCGAGT 58.609 55.000 9.46 0.00 0.00 4.18
764 785 1.749634 CTACCGGATCCAGTTCGAGTT 59.250 52.381 9.46 0.00 0.00 3.01
765 786 1.843368 ACCGGATCCAGTTCGAGTTA 58.157 50.000 9.46 0.00 0.00 2.24
766 787 2.385803 ACCGGATCCAGTTCGAGTTAT 58.614 47.619 9.46 0.00 0.00 1.89
767 788 2.100916 ACCGGATCCAGTTCGAGTTATG 59.899 50.000 9.46 0.00 0.00 1.90
768 789 2.128035 CGGATCCAGTTCGAGTTATGC 58.872 52.381 13.41 0.00 0.00 3.14
769 790 2.223829 CGGATCCAGTTCGAGTTATGCT 60.224 50.000 13.41 0.00 0.00 3.79
770 791 3.004419 CGGATCCAGTTCGAGTTATGCTA 59.996 47.826 13.41 0.00 0.00 3.49
771 792 4.499188 CGGATCCAGTTCGAGTTATGCTAA 60.499 45.833 13.41 0.00 0.00 3.09
772 793 5.357257 GGATCCAGTTCGAGTTATGCTAAA 58.643 41.667 6.95 0.00 0.00 1.85
773 794 5.815740 GGATCCAGTTCGAGTTATGCTAAAA 59.184 40.000 6.95 0.00 0.00 1.52
774 795 6.315393 GGATCCAGTTCGAGTTATGCTAAAAA 59.685 38.462 6.95 0.00 0.00 1.94
824 846 4.511838 CGAGAGGGAGAGGGATCC 57.488 66.667 1.92 1.92 38.76 3.36
1166 1251 1.246056 GCAAGGTCAGCAATGGCAGA 61.246 55.000 0.00 0.00 44.61 4.26
1799 1890 1.451387 CACGTGGGATTACCTGCCC 60.451 63.158 7.95 0.00 44.93 5.36
1868 1959 3.695606 GTGAGCAGGAGGGACGCA 61.696 66.667 0.00 0.00 0.00 5.24
2130 2832 2.398252 AGTCAGTGGCATCATCAGTG 57.602 50.000 0.00 0.00 37.02 3.66
2132 2834 1.065926 GTCAGTGGCATCATCAGTGGA 60.066 52.381 0.00 0.00 36.51 4.02
2138 2840 3.194116 GTGGCATCATCAGTGGACATTTT 59.806 43.478 0.00 0.00 0.00 1.82
2141 2843 4.641989 GGCATCATCAGTGGACATTTTACT 59.358 41.667 0.00 0.00 0.00 2.24
2144 2846 6.094603 GCATCATCAGTGGACATTTTACTCTT 59.905 38.462 0.00 0.00 0.00 2.85
2153 3085 8.598041 AGTGGACATTTTACTCTTCTAAGTCAT 58.402 33.333 0.00 0.00 0.00 3.06
2155 3087 7.759886 TGGACATTTTACTCTTCTAAGTCATCG 59.240 37.037 0.00 0.00 0.00 3.84
2170 3102 2.640302 ATCGGACAGACAGCAGCGT 61.640 57.895 0.00 0.00 0.00 5.07
2172 3104 2.740055 GGACAGACAGCAGCGTGG 60.740 66.667 0.00 0.00 0.00 4.94
2173 3105 2.740055 GACAGACAGCAGCGTGGG 60.740 66.667 0.00 0.00 0.00 4.61
2174 3106 3.521529 GACAGACAGCAGCGTGGGT 62.522 63.158 0.00 0.00 0.00 4.51
2178 3124 1.672356 GACAGCAGCGTGGGTCATT 60.672 57.895 5.13 0.00 0.00 2.57
2182 3128 1.134818 CAGCAGCGTGGGTCATTACTA 60.135 52.381 0.00 0.00 0.00 1.82
2184 3130 2.170607 AGCAGCGTGGGTCATTACTATT 59.829 45.455 0.00 0.00 0.00 1.73
2185 3131 2.287915 GCAGCGTGGGTCATTACTATTG 59.712 50.000 0.00 0.00 0.00 1.90
2186 3132 2.872245 CAGCGTGGGTCATTACTATTGG 59.128 50.000 0.00 0.00 0.00 3.16
2191 3322 5.675323 GCGTGGGTCATTACTATTGGTTTTC 60.675 44.000 0.00 0.00 0.00 2.29
2192 3323 5.646360 CGTGGGTCATTACTATTGGTTTTCT 59.354 40.000 0.00 0.00 0.00 2.52
2193 3324 6.819649 CGTGGGTCATTACTATTGGTTTTCTA 59.180 38.462 0.00 0.00 0.00 2.10
2231 3396 5.072329 TGAATTAGGAGATGGGACCAGAATC 59.928 44.000 0.00 0.00 0.00 2.52
2246 3411 3.190079 CAGAATCCTGTCGTGGTGTATG 58.810 50.000 0.00 0.00 35.70 2.39
2257 3422 2.151202 GTGGTGTATGTGGGTTCAGTG 58.849 52.381 0.00 0.00 0.00 3.66
2258 3423 1.073125 TGGTGTATGTGGGTTCAGTGG 59.927 52.381 0.00 0.00 0.00 4.00
2260 3425 2.423577 GTGTATGTGGGTTCAGTGGTC 58.576 52.381 0.00 0.00 0.00 4.02
2274 3448 0.969894 GTGGTCAGTGGTCACTAGCT 59.030 55.000 3.06 0.00 40.20 3.32
2275 3449 2.168496 GTGGTCAGTGGTCACTAGCTA 58.832 52.381 3.06 0.00 40.20 3.32
2276 3450 2.094649 GTGGTCAGTGGTCACTAGCTAC 60.095 54.545 3.06 4.53 40.20 3.58
2277 3451 2.225041 TGGTCAGTGGTCACTAGCTACT 60.225 50.000 3.06 0.00 40.20 2.57
2362 3536 2.135139 CGCAAGTGAGCACAGACTTTA 58.865 47.619 3.19 0.00 29.73 1.85
2387 3570 2.624316 TGTGAGTACACCGACGATTC 57.376 50.000 0.00 0.00 45.40 2.52
2392 3600 1.471684 AGTACACCGACGATTCTGTCC 59.528 52.381 0.00 0.00 35.40 4.02
2401 3610 0.103208 CGATTCTGTCCCTTCTCCCG 59.897 60.000 0.00 0.00 0.00 5.14
2406 3615 0.466124 CTGTCCCTTCTCCCGAATCC 59.534 60.000 0.00 0.00 0.00 3.01
2408 3617 1.041447 GTCCCTTCTCCCGAATCCGA 61.041 60.000 0.00 0.00 38.22 4.55
2524 3735 0.678048 ATCCTTTCACCTGGAAGCGC 60.678 55.000 0.00 0.00 36.72 5.92
2642 3869 2.202878 CGTCCATCCCGCGTCAAT 60.203 61.111 4.92 0.00 0.00 2.57
2952 4375 4.023291 TCTTTTTGCTGGAACCACTTCTT 58.977 39.130 0.00 0.00 0.00 2.52
3164 4591 2.103941 GGATTTTTGCTGGAACCAACCA 59.896 45.455 0.00 0.00 38.33 3.67
3165 4592 3.244526 GGATTTTTGCTGGAACCAACCAT 60.245 43.478 0.00 0.00 39.34 3.55
3732 5197 2.124736 GCGCCTATCAGTGCCCAA 60.125 61.111 0.00 0.00 37.29 4.12
3733 5198 1.526917 GCGCCTATCAGTGCCCAAT 60.527 57.895 0.00 0.00 37.29 3.16
3734 5199 1.510480 GCGCCTATCAGTGCCCAATC 61.510 60.000 0.00 0.00 37.29 2.67
3735 5200 0.886490 CGCCTATCAGTGCCCAATCC 60.886 60.000 0.00 0.00 0.00 3.01
3736 5201 0.886490 GCCTATCAGTGCCCAATCCG 60.886 60.000 0.00 0.00 0.00 4.18
3741 5206 2.620251 TCAGTGCCCAATCCGATAAG 57.380 50.000 0.00 0.00 0.00 1.73
3780 5245 4.151335 GCAATCATACTCATGTCACGATCC 59.849 45.833 0.00 0.00 33.57 3.36
3787 5252 1.153568 ATGTCACGATCCCACTGCG 60.154 57.895 0.00 0.00 0.00 5.18
3815 5280 1.205655 TCTCGGTGAATTCTCTGCAGG 59.794 52.381 15.13 4.77 0.00 4.85
3821 5286 3.879892 GGTGAATTCTCTGCAGGATTACC 59.120 47.826 15.13 14.19 0.00 2.85
3959 5437 4.087892 GCTGAGGAAGGCGCAGGA 62.088 66.667 10.83 0.00 0.00 3.86
4485 5963 1.786937 AGAGCCTCTGATGGTCGAAT 58.213 50.000 0.00 0.00 0.00 3.34
4495 5973 3.153130 TGATGGTCGAATTTCTTGGCAA 58.847 40.909 0.00 0.00 0.00 4.52
4595 6074 1.430853 TCCAAACAATCCCACCCATCA 59.569 47.619 0.00 0.00 0.00 3.07
4601 6080 3.569491 ACAATCCCACCCATCAATCATC 58.431 45.455 0.00 0.00 0.00 2.92
4645 6124 5.703592 TCATTCTGTGTTTAACGCTACCAAT 59.296 36.000 10.08 0.91 0.00 3.16
5363 6842 4.113815 CCGGAGCCATGGGAAGCA 62.114 66.667 15.13 0.00 0.00 3.91
5621 7100 9.275398 TGTATTGTGTAACTCGAATTACCTTTT 57.725 29.630 13.70 0.57 38.04 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.137523 CACAAAATGGCAAGGCTGAAC 58.862 47.619 0.00 0.00 0.00 3.18
51 52 1.327303 TTGCATCCCGCTTTTCTTGT 58.673 45.000 0.00 0.00 43.06 3.16
60 61 3.825611 AACGGCATTGCATCCCGC 61.826 61.111 16.95 4.69 45.58 6.13
63 64 1.434696 CTCCAACGGCATTGCATCC 59.565 57.895 11.39 0.00 36.93 3.51
64 65 1.031571 TCCTCCAACGGCATTGCATC 61.032 55.000 11.39 0.00 36.93 3.91
66 67 1.675310 CTCCTCCAACGGCATTGCA 60.675 57.895 11.39 0.00 36.93 4.08
87 88 8.937634 TCATTAAATCTTCCCTACGTACTTTC 57.062 34.615 0.00 0.00 0.00 2.62
90 91 9.543783 GAATTCATTAAATCTTCCCTACGTACT 57.456 33.333 0.00 0.00 0.00 2.73
92 93 9.321562 GTGAATTCATTAAATCTTCCCTACGTA 57.678 33.333 12.12 0.00 0.00 3.57
105 106 9.029368 TGTGATAATGGTGGTGAATTCATTAAA 57.971 29.630 12.12 0.00 36.22 1.52
114 115 4.085009 TGCAATGTGATAATGGTGGTGAA 58.915 39.130 0.00 0.00 0.00 3.18
117 118 4.279169 GCTATGCAATGTGATAATGGTGGT 59.721 41.667 0.00 0.00 0.00 4.16
120 121 4.733165 AGGCTATGCAATGTGATAATGGT 58.267 39.130 0.00 0.00 0.00 3.55
126 127 5.829391 TGTTATCAAGGCTATGCAATGTGAT 59.171 36.000 0.00 0.00 0.00 3.06
155 156 4.743151 TCACGTTTGTTCACACTCAGTATC 59.257 41.667 0.00 0.00 0.00 2.24
156 157 4.689071 TCACGTTTGTTCACACTCAGTAT 58.311 39.130 0.00 0.00 0.00 2.12
189 190 2.600790 TCTGACACCTCCCTCGTTTTA 58.399 47.619 0.00 0.00 0.00 1.52
191 192 1.645710 ATCTGACACCTCCCTCGTTT 58.354 50.000 0.00 0.00 0.00 3.60
192 193 1.645710 AATCTGACACCTCCCTCGTT 58.354 50.000 0.00 0.00 0.00 3.85
194 195 3.493350 CCATAAATCTGACACCTCCCTCG 60.493 52.174 0.00 0.00 0.00 4.63
196 197 2.173569 GCCATAAATCTGACACCTCCCT 59.826 50.000 0.00 0.00 0.00 4.20
197 198 2.576615 GCCATAAATCTGACACCTCCC 58.423 52.381 0.00 0.00 0.00 4.30
213 214 1.078143 GTCCTTTCCTCTGCGCCAT 60.078 57.895 4.18 0.00 0.00 4.40
216 217 1.078143 ATGGTCCTTTCCTCTGCGC 60.078 57.895 0.00 0.00 0.00 6.09
221 222 3.118592 CCACTACTCATGGTCCTTTCCTC 60.119 52.174 0.00 0.00 32.08 3.71
234 235 3.779444 AGATGACTTCACCCACTACTCA 58.221 45.455 0.00 0.00 0.00 3.41
274 275 6.320164 CCCATTGTAAGTTTTTCGGGATATCA 59.680 38.462 4.83 0.00 34.10 2.15
275 276 6.320418 ACCCATTGTAAGTTTTTCGGGATATC 59.680 38.462 0.00 0.00 36.26 1.63
282 283 5.768317 ACATCACCCATTGTAAGTTTTTCG 58.232 37.500 0.00 0.00 0.00 3.46
288 289 4.380843 TTGGACATCACCCATTGTAAGT 57.619 40.909 0.00 0.00 33.04 2.24
297 298 6.475504 TGATATCATACATTGGACATCACCC 58.524 40.000 0.00 0.00 0.00 4.61
317 327 4.699257 GCAAAACATTTGCCCCATTTGATA 59.301 37.500 15.12 0.00 39.38 2.15
320 330 2.885894 AGCAAAACATTTGCCCCATTTG 59.114 40.909 20.66 1.76 45.98 2.32
321 331 3.226682 AGCAAAACATTTGCCCCATTT 57.773 38.095 20.66 2.40 45.98 2.32
337 347 7.201911 CCTTCCCTTTTCTTCTTCTTTTAGCAA 60.202 37.037 0.00 0.00 0.00 3.91
339 349 6.682746 CCTTCCCTTTTCTTCTTCTTTTAGC 58.317 40.000 0.00 0.00 0.00 3.09
364 374 3.506096 CAGTGCATGCCAGCCTCG 61.506 66.667 16.68 0.00 0.00 4.63
378 399 0.952497 CCGCACACTCTTCATGCAGT 60.952 55.000 0.00 0.00 39.39 4.40
381 402 1.580845 AAGCCGCACACTCTTCATGC 61.581 55.000 0.00 0.00 35.96 4.06
386 407 3.670625 TGTAATAAAGCCGCACACTCTT 58.329 40.909 0.00 0.00 0.00 2.85
410 431 0.744771 AGCTCGCGATTTTCTTCCCC 60.745 55.000 10.36 0.00 0.00 4.81
412 433 4.506654 TGTATTAGCTCGCGATTTTCTTCC 59.493 41.667 10.36 0.00 0.00 3.46
420 441 6.072397 ACTCTCTTTATGTATTAGCTCGCGAT 60.072 38.462 10.36 0.00 0.00 4.58
436 457 1.550130 CCCGGCACCCACTCTCTTTA 61.550 60.000 0.00 0.00 0.00 1.85
461 482 2.635229 CTTCTGGCATCGTCCCCTCG 62.635 65.000 0.00 0.00 0.00 4.63
464 485 1.153349 GACTTCTGGCATCGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
465 486 1.153349 GGACTTCTGGCATCGTCCC 60.153 63.158 15.24 0.41 39.96 4.46
466 487 1.519455 CGGACTTCTGGCATCGTCC 60.519 63.158 15.84 15.84 41.89 4.79
467 488 0.526524 CTCGGACTTCTGGCATCGTC 60.527 60.000 0.00 0.00 0.00 4.20
468 489 0.965866 TCTCGGACTTCTGGCATCGT 60.966 55.000 0.00 0.00 0.00 3.73
469 490 0.173481 TTCTCGGACTTCTGGCATCG 59.827 55.000 0.00 0.00 0.00 3.84
470 491 1.478510 TCTTCTCGGACTTCTGGCATC 59.521 52.381 0.00 0.00 0.00 3.91
471 492 1.205893 GTCTTCTCGGACTTCTGGCAT 59.794 52.381 0.00 0.00 33.81 4.40
472 493 0.603569 GTCTTCTCGGACTTCTGGCA 59.396 55.000 0.00 0.00 33.81 4.92
473 494 0.108567 GGTCTTCTCGGACTTCTGGC 60.109 60.000 0.00 0.00 36.55 4.85
474 495 0.171455 CGGTCTTCTCGGACTTCTGG 59.829 60.000 0.00 0.00 36.55 3.86
475 496 0.882474 ACGGTCTTCTCGGACTTCTG 59.118 55.000 0.00 0.00 36.55 3.02
476 497 0.882474 CACGGTCTTCTCGGACTTCT 59.118 55.000 0.00 0.00 36.55 2.85
477 498 0.109226 CCACGGTCTTCTCGGACTTC 60.109 60.000 0.00 0.00 36.55 3.01
478 499 1.965219 CCACGGTCTTCTCGGACTT 59.035 57.895 0.00 0.00 36.55 3.01
479 500 2.637383 GCCACGGTCTTCTCGGACT 61.637 63.158 0.00 0.00 36.55 3.85
480 501 2.126031 GCCACGGTCTTCTCGGAC 60.126 66.667 0.00 0.00 35.66 4.79
481 502 3.744719 CGCCACGGTCTTCTCGGA 61.745 66.667 0.00 0.00 0.00 4.55
482 503 3.685214 CTCGCCACGGTCTTCTCGG 62.685 68.421 0.00 0.00 0.00 4.63
483 504 2.202492 CTCGCCACGGTCTTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
484 505 2.182030 CCTCGCCACGGTCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
485 506 2.282958 TCCTCGCCACGGTCTTCT 60.283 61.111 0.00 0.00 0.00 2.85
486 507 2.182030 CTCCTCGCCACGGTCTTC 59.818 66.667 0.00 0.00 0.00 2.87
487 508 4.070552 GCTCCTCGCCACGGTCTT 62.071 66.667 0.00 0.00 0.00 3.01
489 510 4.803426 CAGCTCCTCGCCACGGTC 62.803 72.222 0.00 0.00 40.39 4.79
492 513 4.504916 CTCCAGCTCCTCGCCACG 62.505 72.222 0.00 0.00 40.39 4.94
493 514 4.154347 CCTCCAGCTCCTCGCCAC 62.154 72.222 0.00 0.00 40.39 5.01
514 535 3.003173 TTGGCACTCCCTCCTCCG 61.003 66.667 0.00 0.00 0.00 4.63
515 536 2.674220 CCTTGGCACTCCCTCCTCC 61.674 68.421 0.00 0.00 0.00 4.30
516 537 1.904990 GACCTTGGCACTCCCTCCTC 61.905 65.000 0.00 0.00 0.00 3.71
517 538 1.920835 GACCTTGGCACTCCCTCCT 60.921 63.158 0.00 0.00 0.00 3.69
518 539 2.671682 GACCTTGGCACTCCCTCC 59.328 66.667 0.00 0.00 0.00 4.30
519 540 2.266055 CGACCTTGGCACTCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
520 541 2.203788 TCGACCTTGGCACTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
521 542 2.047179 GTCGACCTTGGCACTCCC 60.047 66.667 3.51 0.00 0.00 4.30
522 543 2.047179 GGTCGACCTTGGCACTCC 60.047 66.667 27.64 0.00 0.00 3.85
523 544 1.021390 CATGGTCGACCTTGGCACTC 61.021 60.000 32.62 8.82 37.48 3.51
524 545 1.003355 CATGGTCGACCTTGGCACT 60.003 57.895 32.62 10.54 37.48 4.40
525 546 3.578456 CATGGTCGACCTTGGCAC 58.422 61.111 32.62 10.16 37.48 5.01
529 550 0.391661 CTCCACCATGGTCGACCTTG 60.392 60.000 33.06 33.06 39.03 3.61
530 551 0.544357 TCTCCACCATGGTCGACCTT 60.544 55.000 33.39 25.40 39.03 3.50
531 552 0.972983 CTCTCCACCATGGTCGACCT 60.973 60.000 33.39 17.38 39.03 3.85
532 553 1.517832 CTCTCCACCATGGTCGACC 59.482 63.158 28.17 28.17 39.03 4.79
533 554 1.517832 CCTCTCCACCATGGTCGAC 59.482 63.158 16.53 7.13 39.03 4.20
534 555 2.359169 GCCTCTCCACCATGGTCGA 61.359 63.158 16.53 13.98 39.03 4.20
535 556 2.187946 GCCTCTCCACCATGGTCG 59.812 66.667 16.53 9.26 39.03 4.79
536 557 1.997874 AGGCCTCTCCACCATGGTC 60.998 63.158 16.53 1.01 39.03 4.02
537 558 2.125912 AGGCCTCTCCACCATGGT 59.874 61.111 13.00 13.00 39.03 3.55
538 559 2.593978 CAGGCCTCTCCACCATGG 59.406 66.667 11.19 11.19 39.43 3.66
539 560 0.982852 TACCAGGCCTCTCCACCATG 60.983 60.000 0.00 0.00 37.29 3.66
540 561 0.253160 TTACCAGGCCTCTCCACCAT 60.253 55.000 0.00 0.00 37.29 3.55
541 562 1.159905 TTACCAGGCCTCTCCACCA 59.840 57.895 0.00 0.00 37.29 4.17
542 563 0.910088 AGTTACCAGGCCTCTCCACC 60.910 60.000 0.00 0.00 37.29 4.61
543 564 0.250513 CAGTTACCAGGCCTCTCCAC 59.749 60.000 0.00 0.00 37.29 4.02
544 565 0.116342 TCAGTTACCAGGCCTCTCCA 59.884 55.000 0.00 0.00 37.29 3.86
545 566 1.501582 ATCAGTTACCAGGCCTCTCC 58.498 55.000 0.00 0.00 0.00 3.71
546 567 3.737032 GTATCAGTTACCAGGCCTCTC 57.263 52.381 0.00 0.00 0.00 3.20
556 577 6.698380 TCTCTTCCAACTTGGTATCAGTTAC 58.302 40.000 7.72 0.00 39.03 2.50
557 578 6.928348 TCTCTTCCAACTTGGTATCAGTTA 57.072 37.500 7.72 0.00 39.03 2.24
558 579 5.825593 TCTCTTCCAACTTGGTATCAGTT 57.174 39.130 7.72 0.00 39.03 3.16
559 580 7.496346 TTATCTCTTCCAACTTGGTATCAGT 57.504 36.000 7.72 0.00 39.03 3.41
560 581 8.043710 AGTTTATCTCTTCCAACTTGGTATCAG 58.956 37.037 7.72 1.23 39.03 2.90
561 582 7.918076 AGTTTATCTCTTCCAACTTGGTATCA 58.082 34.615 7.72 0.00 39.03 2.15
562 583 8.041323 TGAGTTTATCTCTTCCAACTTGGTATC 58.959 37.037 7.72 0.00 43.13 2.24
563 584 7.918076 TGAGTTTATCTCTTCCAACTTGGTAT 58.082 34.615 7.72 0.00 43.13 2.73
564 585 7.311092 TGAGTTTATCTCTTCCAACTTGGTA 57.689 36.000 7.72 0.00 43.13 3.25
565 586 6.187727 TGAGTTTATCTCTTCCAACTTGGT 57.812 37.500 7.72 0.00 43.13 3.67
566 587 7.693969 ATTGAGTTTATCTCTTCCAACTTGG 57.306 36.000 0.74 0.74 43.13 3.61
567 588 8.786898 TCAATTGAGTTTATCTCTTCCAACTTG 58.213 33.333 3.38 0.00 43.13 3.16
568 589 8.924511 TCAATTGAGTTTATCTCTTCCAACTT 57.075 30.769 3.38 0.00 43.13 2.66
569 590 8.954350 CATCAATTGAGTTTATCTCTTCCAACT 58.046 33.333 14.54 0.00 43.13 3.16
570 591 8.734386 ACATCAATTGAGTTTATCTCTTCCAAC 58.266 33.333 14.54 0.00 43.13 3.77
571 592 8.868522 ACATCAATTGAGTTTATCTCTTCCAA 57.131 30.769 14.54 0.00 43.13 3.53
572 593 8.868522 AACATCAATTGAGTTTATCTCTTCCA 57.131 30.769 14.54 0.00 43.13 3.53
582 603 9.985730 ATGTCAACAATAACATCAATTGAGTTT 57.014 25.926 20.73 15.26 37.68 2.66
591 612 8.547894 GCTCGTATTATGTCAACAATAACATCA 58.452 33.333 0.00 0.00 37.33 3.07
592 613 8.009974 GGCTCGTATTATGTCAACAATAACATC 58.990 37.037 0.00 0.00 37.33 3.06
593 614 7.715249 AGGCTCGTATTATGTCAACAATAACAT 59.285 33.333 0.00 0.00 39.38 2.71
594 615 7.045416 AGGCTCGTATTATGTCAACAATAACA 58.955 34.615 0.00 0.00 0.00 2.41
595 616 7.223971 TGAGGCTCGTATTATGTCAACAATAAC 59.776 37.037 10.42 0.00 0.00 1.89
596 617 7.269316 TGAGGCTCGTATTATGTCAACAATAA 58.731 34.615 10.42 0.00 0.00 1.40
597 618 6.811954 TGAGGCTCGTATTATGTCAACAATA 58.188 36.000 10.42 0.00 0.00 1.90
598 619 5.670485 TGAGGCTCGTATTATGTCAACAAT 58.330 37.500 10.42 0.00 0.00 2.71
599 620 5.079689 TGAGGCTCGTATTATGTCAACAA 57.920 39.130 10.42 0.00 0.00 2.83
600 621 4.729227 TGAGGCTCGTATTATGTCAACA 57.271 40.909 10.42 0.00 0.00 3.33
601 622 8.027189 TGTATATGAGGCTCGTATTATGTCAAC 58.973 37.037 28.89 20.22 31.53 3.18
602 623 8.117813 TGTATATGAGGCTCGTATTATGTCAA 57.882 34.615 28.89 10.89 31.53 3.18
603 624 7.610305 TCTGTATATGAGGCTCGTATTATGTCA 59.390 37.037 28.89 19.13 31.53 3.58
604 625 7.986562 TCTGTATATGAGGCTCGTATTATGTC 58.013 38.462 28.89 16.54 31.53 3.06
605 626 7.829706 TCTCTGTATATGAGGCTCGTATTATGT 59.170 37.037 28.89 12.19 31.53 2.29
606 627 8.214721 TCTCTGTATATGAGGCTCGTATTATG 57.785 38.462 28.89 19.46 31.53 1.90
607 628 7.500892 CCTCTCTGTATATGAGGCTCGTATTAT 59.499 40.741 28.89 13.76 40.52 1.28
608 629 6.824196 CCTCTCTGTATATGAGGCTCGTATTA 59.176 42.308 28.89 18.93 40.52 0.98
609 630 5.650266 CCTCTCTGTATATGAGGCTCGTATT 59.350 44.000 28.89 15.94 40.52 1.89
610 631 5.189928 CCTCTCTGTATATGAGGCTCGTAT 58.810 45.833 27.37 27.37 40.52 3.06
611 632 4.565861 CCCTCTCTGTATATGAGGCTCGTA 60.566 50.000 18.22 18.22 44.32 3.43
612 633 3.417101 CCTCTCTGTATATGAGGCTCGT 58.583 50.000 14.64 14.64 40.52 4.18
613 634 2.752354 CCCTCTCTGTATATGAGGCTCG 59.248 54.545 10.42 0.00 44.32 5.03
614 635 3.096092 CCCCTCTCTGTATATGAGGCTC 58.904 54.545 7.79 7.79 44.32 4.70
615 636 2.724672 TCCCCTCTCTGTATATGAGGCT 59.275 50.000 0.00 0.00 44.32 4.58
616 637 3.176924 TCCCCTCTCTGTATATGAGGC 57.823 52.381 0.00 0.00 44.32 4.70
617 638 4.526262 CAGTTCCCCTCTCTGTATATGAGG 59.474 50.000 0.00 0.00 45.02 3.86
618 639 5.389520 TCAGTTCCCCTCTCTGTATATGAG 58.610 45.833 0.00 0.81 0.00 2.90
619 640 5.403558 TCAGTTCCCCTCTCTGTATATGA 57.596 43.478 0.00 0.00 0.00 2.15
620 641 5.508153 CGTTCAGTTCCCCTCTCTGTATATG 60.508 48.000 0.00 0.00 0.00 1.78
621 642 4.585162 CGTTCAGTTCCCCTCTCTGTATAT 59.415 45.833 0.00 0.00 0.00 0.86
622 643 3.952323 CGTTCAGTTCCCCTCTCTGTATA 59.048 47.826 0.00 0.00 0.00 1.47
623 644 2.761208 CGTTCAGTTCCCCTCTCTGTAT 59.239 50.000 0.00 0.00 0.00 2.29
624 645 2.168496 CGTTCAGTTCCCCTCTCTGTA 58.832 52.381 0.00 0.00 0.00 2.74
625 646 0.969894 CGTTCAGTTCCCCTCTCTGT 59.030 55.000 0.00 0.00 0.00 3.41
626 647 0.390472 GCGTTCAGTTCCCCTCTCTG 60.390 60.000 0.00 0.00 0.00 3.35
627 648 1.545706 GGCGTTCAGTTCCCCTCTCT 61.546 60.000 0.00 0.00 0.00 3.10
628 649 1.079057 GGCGTTCAGTTCCCCTCTC 60.079 63.158 0.00 0.00 0.00 3.20
629 650 2.593956 GGGCGTTCAGTTCCCCTCT 61.594 63.158 0.00 0.00 34.59 3.69
630 651 1.262640 TAGGGCGTTCAGTTCCCCTC 61.263 60.000 0.00 0.00 44.49 4.30
631 652 2.529389 AGGGCGTTCAGTTCCCCT 60.529 61.111 0.00 0.00 42.99 4.79
632 653 1.078637 GTAGGGCGTTCAGTTCCCC 60.079 63.158 0.00 0.00 40.97 4.81
633 654 1.078637 GGTAGGGCGTTCAGTTCCC 60.079 63.158 0.00 0.00 40.36 3.97
634 655 0.391263 CTGGTAGGGCGTTCAGTTCC 60.391 60.000 0.00 0.00 0.00 3.62
635 656 0.606604 TCTGGTAGGGCGTTCAGTTC 59.393 55.000 9.08 0.00 0.00 3.01
636 657 0.608640 CTCTGGTAGGGCGTTCAGTT 59.391 55.000 9.08 0.00 0.00 3.16
637 658 0.542232 ACTCTGGTAGGGCGTTCAGT 60.542 55.000 9.08 0.00 0.00 3.41
638 659 0.108615 CACTCTGGTAGGGCGTTCAG 60.109 60.000 4.55 4.55 0.00 3.02
639 660 1.541310 CCACTCTGGTAGGGCGTTCA 61.541 60.000 0.00 0.00 31.35 3.18
640 661 1.218316 CCACTCTGGTAGGGCGTTC 59.782 63.158 0.00 0.00 31.35 3.95
641 662 2.955881 GCCACTCTGGTAGGGCGTT 61.956 63.158 0.00 0.00 40.46 4.84
642 663 3.391382 GCCACTCTGGTAGGGCGT 61.391 66.667 0.00 0.00 40.46 5.68
643 664 3.390521 TGCCACTCTGGTAGGGCG 61.391 66.667 0.00 0.00 41.79 6.13
644 665 2.269241 GTGCCACTCTGGTAGGGC 59.731 66.667 0.00 0.00 40.46 5.19
645 666 2.579201 CGTGCCACTCTGGTAGGG 59.421 66.667 0.00 0.00 40.46 3.53
646 667 2.125512 GCGTGCCACTCTGGTAGG 60.126 66.667 0.00 0.00 40.46 3.18
647 668 1.446792 CTGCGTGCCACTCTGGTAG 60.447 63.158 0.00 0.00 40.46 3.18
648 669 2.656646 CTGCGTGCCACTCTGGTA 59.343 61.111 0.00 0.00 40.46 3.25
649 670 4.320456 CCTGCGTGCCACTCTGGT 62.320 66.667 2.84 0.00 40.46 4.00
650 671 4.320456 ACCTGCGTGCCACTCTGG 62.320 66.667 8.96 8.96 41.55 3.86
651 672 2.740055 GACCTGCGTGCCACTCTG 60.740 66.667 0.00 0.00 0.00 3.35
652 673 2.587247 ATGACCTGCGTGCCACTCT 61.587 57.895 0.00 0.00 0.00 3.24
653 674 2.046892 ATGACCTGCGTGCCACTC 60.047 61.111 0.00 0.00 0.00 3.51
654 675 2.359107 CATGACCTGCGTGCCACT 60.359 61.111 0.00 0.00 0.00 4.00
655 676 3.434319 CCATGACCTGCGTGCCAC 61.434 66.667 0.00 0.00 31.94 5.01
656 677 4.720902 CCCATGACCTGCGTGCCA 62.721 66.667 0.00 0.00 31.94 4.92
662 683 4.760047 ACGACGCCCATGACCTGC 62.760 66.667 0.00 0.00 0.00 4.85
663 684 2.578163 ATCACGACGCCCATGACCTG 62.578 60.000 0.00 0.00 0.00 4.00
664 685 2.298158 GATCACGACGCCCATGACCT 62.298 60.000 0.00 0.00 0.00 3.85
665 686 1.883084 GATCACGACGCCCATGACC 60.883 63.158 0.00 0.00 0.00 4.02
666 687 1.883084 GGATCACGACGCCCATGAC 60.883 63.158 0.00 0.00 0.00 3.06
667 688 0.753848 TAGGATCACGACGCCCATGA 60.754 55.000 0.00 0.00 0.00 3.07
668 689 0.104120 TTAGGATCACGACGCCCATG 59.896 55.000 0.00 0.00 0.00 3.66
669 690 0.828022 TTTAGGATCACGACGCCCAT 59.172 50.000 0.00 0.00 0.00 4.00
670 691 0.828022 ATTTAGGATCACGACGCCCA 59.172 50.000 0.00 0.00 0.00 5.36
671 692 2.223876 TGTATTTAGGATCACGACGCCC 60.224 50.000 0.00 0.00 0.00 6.13
672 693 3.088194 TGTATTTAGGATCACGACGCC 57.912 47.619 0.00 0.00 0.00 5.68
673 694 4.357142 TCTTGTATTTAGGATCACGACGC 58.643 43.478 0.00 0.00 0.00 5.19
674 695 6.880822 TTTCTTGTATTTAGGATCACGACG 57.119 37.500 0.00 0.00 0.00 5.12
675 696 8.252964 ACTTTTCTTGTATTTAGGATCACGAC 57.747 34.615 0.00 0.00 0.00 4.34
687 708 9.231297 ACTGTGCATGTATACTTTTCTTGTATT 57.769 29.630 4.17 0.00 33.32 1.89
688 709 8.792830 ACTGTGCATGTATACTTTTCTTGTAT 57.207 30.769 4.17 0.00 35.19 2.29
689 710 8.615878 AACTGTGCATGTATACTTTTCTTGTA 57.384 30.769 4.17 0.00 0.00 2.41
690 711 7.510549 AACTGTGCATGTATACTTTTCTTGT 57.489 32.000 4.17 0.00 0.00 3.16
691 712 9.329913 GTTAACTGTGCATGTATACTTTTCTTG 57.670 33.333 4.17 0.00 0.00 3.02
692 713 8.227791 CGTTAACTGTGCATGTATACTTTTCTT 58.772 33.333 4.17 0.00 0.00 2.52
693 714 7.386848 ACGTTAACTGTGCATGTATACTTTTCT 59.613 33.333 4.17 0.00 0.00 2.52
694 715 7.515643 ACGTTAACTGTGCATGTATACTTTTC 58.484 34.615 4.17 0.00 0.00 2.29
695 716 7.429636 ACGTTAACTGTGCATGTATACTTTT 57.570 32.000 4.17 0.00 0.00 2.27
696 717 7.041644 ACAACGTTAACTGTGCATGTATACTTT 60.042 33.333 0.00 0.00 0.00 2.66
697 718 6.425721 ACAACGTTAACTGTGCATGTATACTT 59.574 34.615 0.00 0.00 0.00 2.24
698 719 5.929992 ACAACGTTAACTGTGCATGTATACT 59.070 36.000 0.00 0.00 0.00 2.12
699 720 6.160664 ACAACGTTAACTGTGCATGTATAC 57.839 37.500 0.00 0.00 0.00 1.47
700 721 9.022915 GTATACAACGTTAACTGTGCATGTATA 57.977 33.333 17.74 17.74 35.20 1.47
701 722 6.978343 ATACAACGTTAACTGTGCATGTAT 57.022 33.333 0.00 12.46 0.00 2.29
702 723 6.867293 TGTATACAACGTTAACTGTGCATGTA 59.133 34.615 2.20 11.17 0.00 2.29
703 724 5.697178 TGTATACAACGTTAACTGTGCATGT 59.303 36.000 2.20 9.77 0.00 3.21
704 725 6.159419 TGTATACAACGTTAACTGTGCATG 57.841 37.500 2.20 5.42 0.00 4.06
705 726 6.788684 TTGTATACAACGTTAACTGTGCAT 57.211 33.333 14.35 4.22 0.00 3.96
706 727 6.788684 ATTGTATACAACGTTAACTGTGCA 57.211 33.333 20.26 4.87 38.86 4.57
707 728 7.292292 TGAATTGTATACAACGTTAACTGTGC 58.708 34.615 20.26 1.11 38.86 4.57
708 729 9.098746 GTTGAATTGTATACAACGTTAACTGTG 57.901 33.333 20.26 7.17 38.86 3.66
718 739 7.486870 GGATTTTCCCGTTGAATTGTATACAAC 59.513 37.037 20.26 9.57 38.86 3.32
719 740 7.394923 AGGATTTTCCCGTTGAATTGTATACAA 59.605 33.333 20.14 20.14 37.19 2.41
720 741 6.887545 AGGATTTTCCCGTTGAATTGTATACA 59.112 34.615 0.08 0.08 37.19 2.29
721 742 7.329588 AGGATTTTCCCGTTGAATTGTATAC 57.670 36.000 0.00 0.00 37.19 1.47
722 743 7.499895 GGTAGGATTTTCCCGTTGAATTGTATA 59.500 37.037 0.00 0.00 37.19 1.47
723 744 6.320418 GGTAGGATTTTCCCGTTGAATTGTAT 59.680 38.462 0.00 0.00 37.19 2.29
724 745 5.648960 GGTAGGATTTTCCCGTTGAATTGTA 59.351 40.000 0.00 0.00 37.19 2.41
725 746 4.461431 GGTAGGATTTTCCCGTTGAATTGT 59.539 41.667 0.00 0.00 37.19 2.71
726 747 4.438200 CGGTAGGATTTTCCCGTTGAATTG 60.438 45.833 0.00 0.00 37.19 2.32
727 748 3.692593 CGGTAGGATTTTCCCGTTGAATT 59.307 43.478 0.00 0.00 37.19 2.17
728 749 3.275999 CGGTAGGATTTTCCCGTTGAAT 58.724 45.455 0.00 0.00 37.19 2.57
729 750 2.616001 CCGGTAGGATTTTCCCGTTGAA 60.616 50.000 0.00 0.00 41.02 2.69
730 751 1.065998 CCGGTAGGATTTTCCCGTTGA 60.066 52.381 0.00 0.00 41.02 3.18
731 752 1.065998 TCCGGTAGGATTTTCCCGTTG 60.066 52.381 0.00 0.00 42.75 4.10
732 753 1.278537 TCCGGTAGGATTTTCCCGTT 58.721 50.000 0.00 0.00 42.75 4.44
733 754 2.995480 TCCGGTAGGATTTTCCCGT 58.005 52.632 0.00 0.00 42.75 5.28
743 764 0.669077 CTCGAACTGGATCCGGTAGG 59.331 60.000 26.70 19.92 34.70 3.18
744 765 1.390565 ACTCGAACTGGATCCGGTAG 58.609 55.000 26.70 21.32 34.70 3.18
745 766 1.843368 AACTCGAACTGGATCCGGTA 58.157 50.000 26.70 10.52 34.70 4.02
746 767 1.843368 TAACTCGAACTGGATCCGGT 58.157 50.000 21.21 21.21 37.08 5.28
747 768 2.743938 CATAACTCGAACTGGATCCGG 58.256 52.381 19.66 19.66 0.00 5.14
748 769 2.128035 GCATAACTCGAACTGGATCCG 58.872 52.381 7.39 4.62 0.00 4.18
749 770 3.460857 AGCATAACTCGAACTGGATCC 57.539 47.619 4.20 4.20 0.00 3.36
750 771 6.903883 TTTTAGCATAACTCGAACTGGATC 57.096 37.500 0.00 0.00 0.00 3.36
775 796 3.253432 GCCAACTCGAACTGGATCTTTTT 59.747 43.478 15.06 0.00 34.35 1.94
776 797 2.814336 GCCAACTCGAACTGGATCTTTT 59.186 45.455 15.06 0.00 34.35 2.27
777 798 2.427506 GCCAACTCGAACTGGATCTTT 58.572 47.619 15.06 0.00 34.35 2.52
778 799 1.339151 GGCCAACTCGAACTGGATCTT 60.339 52.381 15.06 0.00 34.35 2.40
1215 1300 3.775654 GTGGAGGTGGCCGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
1286 1371 4.116328 CGCAGCGAGAAGACCGGA 62.116 66.667 9.98 0.00 0.00 5.14
1619 1710 1.511305 CTCGAACAGCCTCCGCTTA 59.489 57.895 0.00 0.00 45.55 3.09
1718 1809 1.920835 GAACTCCTGGGCCTCCACT 60.921 63.158 4.53 0.00 38.32 4.00
1799 1890 2.962786 TCGAACCACCGCAACACG 60.963 61.111 0.00 0.00 43.15 4.49
1868 1959 1.683385 TCGATGAGACGATGCAGGAAT 59.317 47.619 0.00 0.00 37.37 3.01
2130 2832 7.222999 CCGATGACTTAGAAGAGTAAAATGTCC 59.777 40.741 0.00 0.00 0.00 4.02
2132 2834 7.760340 GTCCGATGACTTAGAAGAGTAAAATGT 59.240 37.037 0.00 0.00 38.53 2.71
2138 2840 5.585445 GTCTGTCCGATGACTTAGAAGAGTA 59.415 44.000 0.00 0.00 42.28 2.59
2141 2843 4.332828 TGTCTGTCCGATGACTTAGAAGA 58.667 43.478 0.00 0.00 42.28 2.87
2144 2846 2.423892 GCTGTCTGTCCGATGACTTAGA 59.576 50.000 0.00 0.00 42.28 2.10
2153 3085 3.295273 ACGCTGCTGTCTGTCCGA 61.295 61.111 0.00 0.00 0.00 4.55
2155 3087 2.740055 CCACGCTGCTGTCTGTCC 60.740 66.667 0.00 0.00 0.00 4.02
2182 3128 7.060421 ACGATGGGTGATAATAGAAAACCAAT 58.940 34.615 0.00 0.00 32.28 3.16
2184 3130 5.996644 ACGATGGGTGATAATAGAAAACCA 58.003 37.500 0.00 0.00 32.28 3.67
2200 3331 3.668447 CCATCTCCTAATTCACGATGGG 58.332 50.000 13.86 0.00 44.57 4.00
2201 3332 3.324846 TCCCATCTCCTAATTCACGATGG 59.675 47.826 14.38 14.38 46.69 3.51
2214 3345 1.419387 CAGGATTCTGGTCCCATCTCC 59.581 57.143 0.00 0.00 39.17 3.71
2215 3346 2.103941 GACAGGATTCTGGTCCCATCTC 59.896 54.545 5.84 0.00 44.99 2.75
2231 3396 0.391130 CCCACATACACCACGACAGG 60.391 60.000 0.00 0.00 0.00 4.00
2246 3411 0.535102 CCACTGACCACTGAACCCAC 60.535 60.000 0.00 0.00 0.00 4.61
2257 3422 2.164624 CAGTAGCTAGTGACCACTGACC 59.835 54.545 21.95 1.61 42.52 4.02
2258 3423 2.820787 ACAGTAGCTAGTGACCACTGAC 59.179 50.000 30.83 1.03 42.52 3.51
2260 3425 4.624336 CTACAGTAGCTAGTGACCACTG 57.376 50.000 30.83 19.81 42.52 3.66
2274 3448 3.548745 TCTACCGTGCTAGCTACAGTA 57.451 47.619 17.23 13.14 0.00 2.74
2275 3449 2.414994 TCTACCGTGCTAGCTACAGT 57.585 50.000 17.23 12.72 0.00 3.55
2276 3450 4.610905 CGTTATCTACCGTGCTAGCTACAG 60.611 50.000 17.23 7.54 0.00 2.74
2277 3451 3.249320 CGTTATCTACCGTGCTAGCTACA 59.751 47.826 17.23 0.00 0.00 2.74
2283 3457 0.308684 CGGCGTTATCTACCGTGCTA 59.691 55.000 0.00 0.00 42.01 3.49
2302 3476 5.757850 GGATTCATCCAACCAAGTGATAC 57.242 43.478 0.51 0.00 46.38 2.24
2333 3507 1.202475 TGCTCACTTGCGTACTGACAA 60.202 47.619 0.00 0.00 35.36 3.18
2354 3528 5.175856 GTGTACTCACAACAGCTAAAGTCTG 59.824 44.000 0.00 0.00 43.37 3.51
2355 3529 5.290386 GTGTACTCACAACAGCTAAAGTCT 58.710 41.667 0.00 0.00 43.37 3.24
2362 3536 1.037493 TCGGTGTACTCACAACAGCT 58.963 50.000 0.00 0.00 42.97 4.24
2401 3610 2.528041 AGCGTTTCCCTATCGGATTC 57.472 50.000 0.00 0.00 41.63 2.52
2406 3615 2.095372 GGTTTCAAGCGTTTCCCTATCG 59.905 50.000 0.00 0.00 0.00 2.92
2408 3617 2.081462 CGGTTTCAAGCGTTTCCCTAT 58.919 47.619 2.98 0.00 44.15 2.57
2524 3735 2.310538 GGTGAAATGAATGGCTAGGGG 58.689 52.381 0.00 0.00 0.00 4.79
2756 3983 2.102161 GCGGTAGCGCCCATTTTG 59.898 61.111 28.01 0.00 0.00 2.44
3374 4828 1.375853 CCGCAAATCATTCCTCGCCA 61.376 55.000 0.00 0.00 0.00 5.69
3732 5197 4.098960 TCCACGAGTTTTAGCTTATCGGAT 59.901 41.667 0.00 0.00 37.69 4.18
3733 5198 3.444742 TCCACGAGTTTTAGCTTATCGGA 59.555 43.478 0.00 0.00 37.69 4.55
3734 5199 3.777478 TCCACGAGTTTTAGCTTATCGG 58.223 45.455 0.00 0.00 37.69 4.18
3735 5200 3.797256 CCTCCACGAGTTTTAGCTTATCG 59.203 47.826 0.00 0.00 39.22 2.92
3736 5201 3.556365 GCCTCCACGAGTTTTAGCTTATC 59.444 47.826 0.00 0.00 0.00 1.75
3741 5206 1.519408 TTGCCTCCACGAGTTTTAGC 58.481 50.000 0.00 0.00 0.00 3.09
3780 5245 0.095935 CGAGAAAATGAGCGCAGTGG 59.904 55.000 11.47 0.00 0.00 4.00
3787 5252 4.633565 AGAGAATTCACCGAGAAAATGAGC 59.366 41.667 8.44 0.00 40.22 4.26
3815 5280 2.098607 TGAGATCGTGACGTGGGTAATC 59.901 50.000 4.40 0.00 0.00 1.75
3821 5286 0.038618 TTGGTGAGATCGTGACGTGG 60.039 55.000 4.40 0.00 0.00 4.94
4395 5873 1.553690 CGACCTTGGGGATGGTGAGT 61.554 60.000 0.00 0.00 36.59 3.41
4485 5963 5.013568 CATTATGATGCCTTGCCAAGAAA 57.986 39.130 5.89 0.00 0.00 2.52
4522 6001 7.624360 AGTAGATAGTAGATACATCAGCAGC 57.376 40.000 0.00 0.00 0.00 5.25
4595 6074 5.595814 AGGGCCATTAGATCTTGATGATT 57.404 39.130 6.18 1.76 35.14 2.57
4601 6080 7.668886 AGAATGATTAAGGGCCATTAGATCTTG 59.331 37.037 21.75 0.00 31.40 3.02
5346 6825 4.113815 TGCTTCCCATGGCTCCGG 62.114 66.667 6.09 0.00 0.00 5.14
5347 6826 2.515523 CTGCTTCCCATGGCTCCG 60.516 66.667 6.09 0.00 0.00 4.63
5348 6827 2.832201 GCTGCTTCCCATGGCTCC 60.832 66.667 6.09 0.00 0.00 4.70
5349 6828 2.832201 GGCTGCTTCCCATGGCTC 60.832 66.667 6.09 0.00 0.00 4.70
5350 6829 3.664888 TGGCTGCTTCCCATGGCT 61.665 61.111 6.09 0.00 0.00 4.75
5351 6830 3.455469 GTGGCTGCTTCCCATGGC 61.455 66.667 6.09 0.00 34.34 4.40
5352 6831 3.136123 CGTGGCTGCTTCCCATGG 61.136 66.667 4.14 4.14 36.04 3.66
5353 6832 3.136123 CCGTGGCTGCTTCCCATG 61.136 66.667 0.00 3.89 38.76 3.66
5354 6833 4.431131 CCCGTGGCTGCTTCCCAT 62.431 66.667 0.00 0.00 34.34 4.00
5473 6952 0.179111 TAATCAGAGTCGGCTTGGCG 60.179 55.000 10.34 10.34 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.