Multiple sequence alignment - TraesCS5B01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G402100 chr5B 100.000 4547 0 0 1 4547 578609227 578604681 0.000000e+00 8397
1 TraesCS5B01G402100 chr5D 94.770 3786 148 24 250 3999 472289952 472286181 0.000000e+00 5849
2 TraesCS5B01G402100 chr5D 93.676 253 14 2 1 253 472290239 472289989 1.190000e-100 377
3 TraesCS5B01G402100 chr5D 80.719 306 21 22 4248 4547 472286165 472285892 2.140000e-48 204
4 TraesCS5B01G402100 chr5A 95.677 3493 136 10 513 3999 591493688 591490205 0.000000e+00 5600
5 TraesCS5B01G402100 chr5A 82.895 228 27 9 11 230 591494159 591493936 1.290000e-45 195
6 TraesCS5B01G402100 chr5A 86.093 151 9 5 4408 4547 591490060 591489911 7.880000e-33 152
7 TraesCS5B01G402100 chr5A 87.402 127 11 3 4248 4373 591490189 591490067 1.710000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G402100 chr5B 578604681 578609227 4546 True 8397.000000 8397 100.000000 1 4547 1 chr5B.!!$R1 4546
1 TraesCS5B01G402100 chr5D 472285892 472290239 4347 True 2143.333333 5849 89.721667 1 4547 3 chr5D.!!$R1 4546
2 TraesCS5B01G402100 chr5A 591489911 591494159 4248 True 1522.000000 5600 88.016750 11 4547 4 chr5A.!!$R1 4536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 926 0.040425 GACGTGCATCCAACCAACAC 60.040 55.0 0.0 0.0 0.00 3.32 F
2177 2264 0.322546 GTAGTCCAGGTTGGCCCAAG 60.323 60.0 0.0 0.0 37.47 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2387 0.250234 TGCTATGCCAGTCAGTGTCC 59.750 55.0 0.00 0.0 0.00 4.02 R
4063 4156 0.037139 ACGCGTGGGTGCAAACTATA 60.037 50.0 12.93 0.0 34.15 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.317160 CCCACGTCTACAGTTCAGCA 59.683 55.000 0.00 0.00 0.00 4.41
57 58 1.000163 CACGTCTACAGTTCAGCACCT 60.000 52.381 0.00 0.00 0.00 4.00
162 163 2.991540 GGCCAAGAACCTGGGTGC 60.992 66.667 0.00 0.00 36.92 5.01
179 180 1.963515 GTGCCACAATTTCCTGGAACT 59.036 47.619 9.04 0.09 33.62 3.01
185 186 5.241728 GCCACAATTTCCTGGAACTATATCC 59.758 44.000 9.04 0.00 40.10 2.59
227 236 4.877323 AACCAGTGAAAACGTTCTTCTC 57.123 40.909 17.82 15.34 34.60 2.87
241 250 3.825143 TCTTCTCGGCATGATTGATGA 57.175 42.857 0.00 0.00 33.31 2.92
255 304 7.570875 GCATGATTGATGAGAGGTTAATTCTCG 60.571 40.741 0.00 0.00 43.16 4.04
259 308 8.649973 ATTGATGAGAGGTTAATTCTCGTAAC 57.350 34.615 12.17 5.09 43.16 2.50
266 315 6.014840 AGAGGTTAATTCTCGTAACAGTTCCA 60.015 38.462 0.00 0.00 36.45 3.53
306 355 2.962421 ACCAAATTCAAGGAAGGCGAAA 59.038 40.909 0.00 0.00 0.00 3.46
312 361 6.590234 AATTCAAGGAAGGCGAAAGTAAAT 57.410 33.333 0.00 0.00 0.00 1.40
374 424 4.649267 TTAGAACAATGGTGGGACATGA 57.351 40.909 0.00 0.00 44.52 3.07
383 433 2.183679 GGTGGGACATGAGACTTCTCT 58.816 52.381 0.00 0.00 44.52 3.10
384 434 2.167487 GGTGGGACATGAGACTTCTCTC 59.833 54.545 0.00 0.00 44.52 3.20
483 541 8.669394 AGCGTTTATTTGAGCTGTAAAAATAC 57.331 30.769 0.00 0.00 38.67 1.89
484 542 7.753580 AGCGTTTATTTGAGCTGTAAAAATACC 59.246 33.333 0.00 0.00 38.67 2.73
490 548 6.716934 TTGAGCTGTAAAAATACCCAAACA 57.283 33.333 0.00 0.00 0.00 2.83
511 569 4.022068 ACACATTGGCTTGTTAACATCCAG 60.022 41.667 21.76 16.55 32.88 3.86
694 752 0.670546 TGTCTAGCTGCGGTGCTTTC 60.671 55.000 0.00 0.00 43.74 2.62
865 926 0.040425 GACGTGCATCCAACCAACAC 60.040 55.000 0.00 0.00 0.00 3.32
873 934 2.930826 TCCAACCAACACCTTCTCTC 57.069 50.000 0.00 0.00 0.00 3.20
912 999 1.211457 GACTGCTTCATCCATCCCTGT 59.789 52.381 0.00 0.00 0.00 4.00
922 1009 0.995024 CCATCCCTGTGTCCTTTCCT 59.005 55.000 0.00 0.00 0.00 3.36
963 1050 1.081174 ACTTCCCTCCTCCCATGAGAA 59.919 52.381 0.00 0.00 41.42 2.87
976 1063 1.952296 CATGAGAAGCCACCAATAGCC 59.048 52.381 0.00 0.00 0.00 3.93
977 1064 0.991146 TGAGAAGCCACCAATAGCCA 59.009 50.000 0.00 0.00 0.00 4.75
1031 1118 1.435577 GCAATTTTGGCCAGAAGCAG 58.564 50.000 14.78 7.66 46.50 4.24
1032 1119 1.435577 CAATTTTGGCCAGAAGCAGC 58.564 50.000 14.78 0.00 46.50 5.25
1039 1126 3.515286 CCAGAAGCAGCCGCATGG 61.515 66.667 0.00 0.00 42.27 3.66
1053 1140 2.765807 ATGGCCGAGTGGGAGAGG 60.766 66.667 0.00 0.00 38.47 3.69
1056 1143 2.043248 GCCGAGTGGGAGAGGGTA 60.043 66.667 0.00 0.00 38.47 3.69
1167 1254 1.896465 GACAACTACCTCCTCAGCTGT 59.104 52.381 14.67 0.00 0.00 4.40
1251 1338 0.531090 CGTTTCTGTCAACCCCGACA 60.531 55.000 0.00 0.00 43.54 4.35
1263 1350 1.909302 ACCCCGACAGACATCAAGATT 59.091 47.619 0.00 0.00 0.00 2.40
1278 1365 2.338577 AGATTGCCGCTAAAGCATCT 57.661 45.000 2.44 0.16 40.59 2.90
1293 1380 1.288350 CATCTCTGGCTTCTGCTTCG 58.712 55.000 0.00 0.00 39.59 3.79
1302 1389 2.216898 GCTTCTGCTTCGCCATTATCT 58.783 47.619 0.00 0.00 36.03 1.98
1317 1404 5.297029 GCCATTATCTCCACTTTACCTTGAC 59.703 44.000 0.00 0.00 0.00 3.18
1386 1473 3.771160 GGTCGCCACTGGATCCGT 61.771 66.667 7.39 5.31 0.00 4.69
1398 1485 3.697045 ACTGGATCCGTCTCTACTTCTTG 59.303 47.826 7.39 0.00 0.00 3.02
1410 1497 2.674796 ACTTCTTGCCTATCACCGAC 57.325 50.000 0.00 0.00 0.00 4.79
1412 1499 2.271800 CTTCTTGCCTATCACCGACAC 58.728 52.381 0.00 0.00 0.00 3.67
1443 1530 2.624838 CCTCACCACTGCAACATTTTCT 59.375 45.455 0.00 0.00 0.00 2.52
1455 1542 4.790766 GCAACATTTTCTGTGTCCACTGAG 60.791 45.833 7.02 0.19 39.77 3.35
1464 1551 1.059098 TGTCCACTGAGAGCATGGTT 58.941 50.000 0.00 0.00 34.89 3.67
1467 1554 1.552337 TCCACTGAGAGCATGGTTCTC 59.448 52.381 13.90 13.90 41.14 2.87
1482 1569 3.118629 TGGTTCTCCTCCATGATTTCTCG 60.119 47.826 0.00 0.00 34.23 4.04
1563 1650 9.660180 GGAGACAACTTAAAGATCATCTTTACT 57.340 33.333 17.92 11.27 45.50 2.24
1731 1818 3.419759 GGCGGTGCACTGGTTACG 61.420 66.667 26.55 16.24 0.00 3.18
1737 1824 0.505655 GTGCACTGGTTACGTCGTTC 59.494 55.000 10.32 0.00 0.00 3.95
1928 2015 6.147492 GCCTCAACAAATATCACAAATGCAAA 59.853 34.615 0.00 0.00 0.00 3.68
1941 2028 7.859598 TCACAAATGCAAAATTCAACATAACC 58.140 30.769 0.00 0.00 0.00 2.85
1945 2032 4.892433 TGCAAAATTCAACATAACCTGGG 58.108 39.130 0.00 0.00 0.00 4.45
1946 2033 4.346418 TGCAAAATTCAACATAACCTGGGT 59.654 37.500 0.00 0.00 0.00 4.51
2127 2214 4.832248 CCTACTACAAGGACTTGATTGCA 58.168 43.478 18.15 0.00 42.93 4.08
2130 2217 4.973168 ACTACAAGGACTTGATTGCAGAA 58.027 39.130 18.15 0.00 42.93 3.02
2177 2264 0.322546 GTAGTCCAGGTTGGCCCAAG 60.323 60.000 0.00 0.00 37.47 3.61
2291 2378 7.558044 TTTTCACCAAAAACAAGCTCAGAAGC 61.558 38.462 0.00 0.00 39.13 3.86
2409 2496 1.876156 CAGAGGACAAACAGCTTCCAC 59.124 52.381 4.25 0.00 0.00 4.02
2427 2514 3.971305 TCCACTCTTGGTTTCTTCCACTA 59.029 43.478 0.00 0.00 44.35 2.74
2562 2649 0.373716 GGCGCTATTTCACCTTCGTG 59.626 55.000 7.64 0.00 41.72 4.35
2589 2676 4.287238 TCAGAAAGCCACGAAAAACTTC 57.713 40.909 0.00 0.00 0.00 3.01
2667 2754 3.200329 AGATGGCACACAGCTGGCA 62.200 57.895 19.93 10.74 45.73 4.92
2731 2818 7.330720 GAGTTTCTGACTGAAATTCAAATGC 57.669 36.000 19.00 3.70 45.17 3.56
2790 2877 3.489355 TGGCTGTTGTGATGAGAACAAT 58.511 40.909 0.00 0.00 39.57 2.71
2829 2916 3.073678 TGAGTTCATGTCAAATGGTCCG 58.926 45.455 0.00 0.00 0.00 4.79
3099 3186 3.956744 AGGAAGCTTTGGGTATCTTGAC 58.043 45.455 0.00 0.00 0.00 3.18
3202 3289 0.552848 AAGACCGGCCATCAATCCAT 59.447 50.000 0.00 0.00 0.00 3.41
3204 3291 0.109342 GACCGGCCATCAATCCATCT 59.891 55.000 0.00 0.00 0.00 2.90
3228 3315 5.780282 TCTTCCAAGAGACCAAGTGAATCTA 59.220 40.000 0.00 0.00 0.00 1.98
3231 3318 4.081198 CCAAGAGACCAAGTGAATCTAGCT 60.081 45.833 0.00 0.00 0.00 3.32
3297 3384 2.566833 TTGATCCCAATATCGCAGGG 57.433 50.000 0.00 0.00 44.22 4.45
3444 3531 4.647564 AGAGAAGGGTGATGTTGTTGAT 57.352 40.909 0.00 0.00 0.00 2.57
3463 3550 2.592861 GCGCCAGTGATGGGATCC 60.593 66.667 1.92 1.92 0.00 3.36
3484 3571 2.553904 CCAATGAAGAGCTTGGAGGTGT 60.554 50.000 0.00 0.00 43.83 4.16
3616 3703 7.155328 ACTGTAATATCTTGTTCGATCCCATC 58.845 38.462 0.00 0.00 0.00 3.51
3625 3712 2.086610 TCGATCCCATCCAGACATCA 57.913 50.000 0.00 0.00 0.00 3.07
3794 3883 6.865834 TTTATGCAATTAGGGGACATTGTT 57.134 33.333 0.00 0.00 33.58 2.83
3795 3884 4.741321 ATGCAATTAGGGGACATTGTTG 57.259 40.909 0.00 0.00 33.58 3.33
3826 3915 5.381757 TGTAAACTAAACCATGCCTTCAGT 58.618 37.500 0.00 0.00 0.00 3.41
3827 3916 5.472137 TGTAAACTAAACCATGCCTTCAGTC 59.528 40.000 0.00 0.00 0.00 3.51
3828 3917 3.073274 ACTAAACCATGCCTTCAGTCC 57.927 47.619 0.00 0.00 0.00 3.85
3829 3918 2.644798 ACTAAACCATGCCTTCAGTCCT 59.355 45.455 0.00 0.00 0.00 3.85
3830 3919 1.915141 AAACCATGCCTTCAGTCCTG 58.085 50.000 0.00 0.00 0.00 3.86
3831 3920 1.067295 AACCATGCCTTCAGTCCTGA 58.933 50.000 0.00 0.00 37.91 3.86
3832 3921 1.293062 ACCATGCCTTCAGTCCTGAT 58.707 50.000 0.00 0.00 39.64 2.90
3884 3977 5.374921 AGGTAATTCCATCATCAGCTGAAG 58.625 41.667 22.50 17.35 37.44 3.02
3889 3982 4.842531 TCCATCATCAGCTGAAGGTAAA 57.157 40.909 22.50 0.00 42.29 2.01
3890 3983 4.774124 TCCATCATCAGCTGAAGGTAAAG 58.226 43.478 22.50 5.16 42.29 1.85
3891 3984 4.225942 TCCATCATCAGCTGAAGGTAAAGT 59.774 41.667 22.50 0.00 42.29 2.66
3893 3986 6.070251 TCCATCATCAGCTGAAGGTAAAGTAA 60.070 38.462 22.50 0.00 42.29 2.24
3894 3987 6.769822 CCATCATCAGCTGAAGGTAAAGTAAT 59.230 38.462 22.50 0.00 37.84 1.89
3895 3988 7.933577 CCATCATCAGCTGAAGGTAAAGTAATA 59.066 37.037 22.50 0.00 37.84 0.98
3898 3991 9.330063 TCATCAGCTGAAGGTAAAGTAATATTG 57.670 33.333 22.50 8.45 0.00 1.90
3899 3992 9.113838 CATCAGCTGAAGGTAAAGTAATATTGT 57.886 33.333 22.50 0.00 0.00 2.71
3933 4026 5.295950 TCCAACGTAGAAAATGTTACCGAA 58.704 37.500 0.00 0.00 35.49 4.30
3953 4046 5.588648 CCGAATAGAATGGCTAGGTGAAAAA 59.411 40.000 0.00 0.00 31.33 1.94
3954 4047 6.458342 CCGAATAGAATGGCTAGGTGAAAAAC 60.458 42.308 0.00 0.00 31.33 2.43
3966 4059 6.577427 GCTAGGTGAAAAACGTAGAAATTGTG 59.423 38.462 8.88 0.00 45.95 3.33
3999 4092 7.343057 AGCTACCTATATCAGCATACAAGCATA 59.657 37.037 0.00 0.00 37.78 3.14
4000 4093 7.651304 GCTACCTATATCAGCATACAAGCATAG 59.349 40.741 0.00 0.00 36.85 2.23
4001 4094 7.724490 ACCTATATCAGCATACAAGCATAGA 57.276 36.000 0.00 0.00 36.85 1.98
4002 4095 8.138928 ACCTATATCAGCATACAAGCATAGAA 57.861 34.615 0.00 0.00 36.85 2.10
4003 4096 8.597167 ACCTATATCAGCATACAAGCATAGAAA 58.403 33.333 0.00 0.00 36.85 2.52
4004 4097 9.610705 CCTATATCAGCATACAAGCATAGAAAT 57.389 33.333 0.00 0.00 36.85 2.17
4007 4100 7.812690 ATCAGCATACAAGCATAGAAATTGA 57.187 32.000 0.00 0.00 36.85 2.57
4008 4101 7.628769 TCAGCATACAAGCATAGAAATTGAA 57.371 32.000 0.00 0.00 36.85 2.69
4009 4102 7.475015 TCAGCATACAAGCATAGAAATTGAAC 58.525 34.615 0.00 0.00 36.85 3.18
4010 4103 6.694411 CAGCATACAAGCATAGAAATTGAACC 59.306 38.462 0.00 0.00 36.85 3.62
4011 4104 6.377996 AGCATACAAGCATAGAAATTGAACCA 59.622 34.615 0.00 0.00 36.85 3.67
4012 4105 7.035004 GCATACAAGCATAGAAATTGAACCAA 58.965 34.615 0.00 0.00 0.00 3.67
4013 4106 7.545265 GCATACAAGCATAGAAATTGAACCAAA 59.455 33.333 0.00 0.00 0.00 3.28
4014 4107 8.863049 CATACAAGCATAGAAATTGAACCAAAC 58.137 33.333 0.00 0.00 0.00 2.93
4015 4108 6.815089 ACAAGCATAGAAATTGAACCAAACA 58.185 32.000 0.00 0.00 0.00 2.83
4016 4109 6.925165 ACAAGCATAGAAATTGAACCAAACAG 59.075 34.615 0.00 0.00 0.00 3.16
4017 4110 6.899393 AGCATAGAAATTGAACCAAACAGA 57.101 33.333 0.00 0.00 0.00 3.41
4018 4111 7.288810 AGCATAGAAATTGAACCAAACAGAA 57.711 32.000 0.00 0.00 0.00 3.02
4019 4112 7.725251 AGCATAGAAATTGAACCAAACAGAAA 58.275 30.769 0.00 0.00 0.00 2.52
4020 4113 8.370182 AGCATAGAAATTGAACCAAACAGAAAT 58.630 29.630 0.00 0.00 0.00 2.17
4021 4114 8.992073 GCATAGAAATTGAACCAAACAGAAATT 58.008 29.630 0.00 0.00 0.00 1.82
4025 4118 8.882736 AGAAATTGAACCAAACAGAAATTGAAC 58.117 29.630 0.00 0.00 0.00 3.18
4026 4119 8.791327 AAATTGAACCAAACAGAAATTGAACT 57.209 26.923 0.00 0.00 0.00 3.01
4027 4120 9.883142 AAATTGAACCAAACAGAAATTGAACTA 57.117 25.926 0.00 0.00 0.00 2.24
4028 4121 9.883142 AATTGAACCAAACAGAAATTGAACTAA 57.117 25.926 0.00 0.00 0.00 2.24
4029 4122 8.696410 TTGAACCAAACAGAAATTGAACTAAC 57.304 30.769 0.00 0.00 0.00 2.34
4030 4123 6.970043 TGAACCAAACAGAAATTGAACTAACG 59.030 34.615 0.00 0.00 0.00 3.18
4031 4124 5.827666 ACCAAACAGAAATTGAACTAACGG 58.172 37.500 0.00 0.00 0.00 4.44
4032 4125 5.591067 ACCAAACAGAAATTGAACTAACGGA 59.409 36.000 0.00 0.00 0.00 4.69
4033 4126 5.912955 CCAAACAGAAATTGAACTAACGGAC 59.087 40.000 0.00 0.00 0.00 4.79
4034 4127 6.459024 CCAAACAGAAATTGAACTAACGGACA 60.459 38.462 0.00 0.00 0.00 4.02
4035 4128 5.924475 ACAGAAATTGAACTAACGGACAG 57.076 39.130 0.00 0.00 0.00 3.51
4036 4129 4.213482 ACAGAAATTGAACTAACGGACAGC 59.787 41.667 0.00 0.00 0.00 4.40
4037 4130 4.213270 CAGAAATTGAACTAACGGACAGCA 59.787 41.667 0.00 0.00 0.00 4.41
4038 4131 4.452455 AGAAATTGAACTAACGGACAGCAG 59.548 41.667 0.00 0.00 0.00 4.24
4039 4132 2.902705 TTGAACTAACGGACAGCAGT 57.097 45.000 0.00 0.00 0.00 4.40
4040 4133 2.902705 TGAACTAACGGACAGCAGTT 57.097 45.000 0.00 0.00 36.41 3.16
4041 4134 2.479837 TGAACTAACGGACAGCAGTTG 58.520 47.619 0.00 0.00 34.30 3.16
4042 4135 2.159014 TGAACTAACGGACAGCAGTTGT 60.159 45.455 0.00 0.00 44.55 3.32
4043 4136 1.865865 ACTAACGGACAGCAGTTGTG 58.134 50.000 0.00 0.00 41.05 3.33
4044 4137 1.411246 ACTAACGGACAGCAGTTGTGA 59.589 47.619 0.00 0.00 41.05 3.58
4045 4138 2.159014 ACTAACGGACAGCAGTTGTGAA 60.159 45.455 0.00 0.00 41.05 3.18
4046 4139 1.967319 AACGGACAGCAGTTGTGAAT 58.033 45.000 0.00 0.00 41.05 2.57
4047 4140 1.512926 ACGGACAGCAGTTGTGAATC 58.487 50.000 0.00 0.00 41.05 2.52
4048 4141 0.798776 CGGACAGCAGTTGTGAATCC 59.201 55.000 0.00 0.00 41.05 3.01
4049 4142 1.609061 CGGACAGCAGTTGTGAATCCT 60.609 52.381 0.00 0.00 41.05 3.24
4050 4143 2.508526 GGACAGCAGTTGTGAATCCTT 58.491 47.619 0.00 0.00 41.05 3.36
4051 4144 3.674997 GGACAGCAGTTGTGAATCCTTA 58.325 45.455 0.00 0.00 41.05 2.69
4052 4145 4.265073 GGACAGCAGTTGTGAATCCTTAT 58.735 43.478 0.00 0.00 41.05 1.73
4053 4146 5.428253 GGACAGCAGTTGTGAATCCTTATA 58.572 41.667 0.00 0.00 41.05 0.98
4054 4147 5.525378 GGACAGCAGTTGTGAATCCTTATAG 59.475 44.000 0.00 0.00 41.05 1.31
4055 4148 6.299805 ACAGCAGTTGTGAATCCTTATAGA 57.700 37.500 0.00 0.00 38.99 1.98
4056 4149 6.711277 ACAGCAGTTGTGAATCCTTATAGAA 58.289 36.000 0.00 0.00 38.99 2.10
4057 4150 7.341805 ACAGCAGTTGTGAATCCTTATAGAAT 58.658 34.615 0.00 0.00 38.99 2.40
4058 4151 7.831193 ACAGCAGTTGTGAATCCTTATAGAATT 59.169 33.333 0.00 0.00 38.99 2.17
4059 4152 9.330063 CAGCAGTTGTGAATCCTTATAGAATTA 57.670 33.333 0.00 0.00 0.00 1.40
4060 4153 9.905713 AGCAGTTGTGAATCCTTATAGAATTAA 57.094 29.630 0.00 0.00 0.00 1.40
4077 4170 9.914834 ATAGAATTAAGTTATAGTTTGCACCCA 57.085 29.630 0.00 0.00 0.00 4.51
4078 4171 8.051901 AGAATTAAGTTATAGTTTGCACCCAC 57.948 34.615 0.00 0.00 0.00 4.61
4079 4172 5.866335 TTAAGTTATAGTTTGCACCCACG 57.134 39.130 0.00 0.00 0.00 4.94
4080 4173 2.081462 AGTTATAGTTTGCACCCACGC 58.919 47.619 0.00 0.00 0.00 5.34
4081 4174 1.080298 TTATAGTTTGCACCCACGCG 58.920 50.000 3.53 3.53 33.35 6.01
4082 4175 0.037139 TATAGTTTGCACCCACGCGT 60.037 50.000 5.58 5.58 33.35 6.01
4096 4189 1.135083 CACGCGTCTTAAGATGTCCCT 60.135 52.381 22.61 3.82 33.71 4.20
4098 4191 1.927174 CGCGTCTTAAGATGTCCCTTG 59.073 52.381 22.61 5.90 33.71 3.61
4099 4192 2.674177 CGCGTCTTAAGATGTCCCTTGT 60.674 50.000 22.61 0.00 33.71 3.16
4100 4193 3.428452 CGCGTCTTAAGATGTCCCTTGTA 60.428 47.826 22.61 0.00 33.71 2.41
4101 4194 4.113354 GCGTCTTAAGATGTCCCTTGTAG 58.887 47.826 22.61 0.55 33.71 2.74
4102 4195 4.142227 GCGTCTTAAGATGTCCCTTGTAGA 60.142 45.833 22.61 0.00 33.71 2.59
4103 4196 5.623824 GCGTCTTAAGATGTCCCTTGTAGAA 60.624 44.000 22.61 0.00 33.71 2.10
4104 4197 6.037098 CGTCTTAAGATGTCCCTTGTAGAAG 58.963 44.000 15.41 0.00 0.00 2.85
4105 4198 5.813157 GTCTTAAGATGTCCCTTGTAGAAGC 59.187 44.000 8.75 0.00 0.00 3.86
4106 4199 3.636153 AAGATGTCCCTTGTAGAAGCC 57.364 47.619 0.00 0.00 0.00 4.35
4107 4200 1.482593 AGATGTCCCTTGTAGAAGCCG 59.517 52.381 0.00 0.00 0.00 5.52
4108 4201 0.541863 ATGTCCCTTGTAGAAGCCGG 59.458 55.000 0.00 0.00 0.00 6.13
4109 4202 0.834687 TGTCCCTTGTAGAAGCCGGT 60.835 55.000 1.90 0.00 0.00 5.28
4110 4203 0.108281 GTCCCTTGTAGAAGCCGGTC 60.108 60.000 1.90 0.00 0.00 4.79
4111 4204 1.221021 CCCTTGTAGAAGCCGGTCC 59.779 63.158 1.90 0.00 0.00 4.46
4112 4205 1.265454 CCCTTGTAGAAGCCGGTCCT 61.265 60.000 1.90 0.00 0.00 3.85
4113 4206 1.481871 CCTTGTAGAAGCCGGTCCTA 58.518 55.000 1.90 0.00 0.00 2.94
4114 4207 1.829222 CCTTGTAGAAGCCGGTCCTAA 59.171 52.381 1.90 0.00 0.00 2.69
4115 4208 2.235402 CCTTGTAGAAGCCGGTCCTAAA 59.765 50.000 1.90 0.00 0.00 1.85
4116 4209 3.307199 CCTTGTAGAAGCCGGTCCTAAAA 60.307 47.826 1.90 3.05 0.00 1.52
4117 4210 4.514401 CTTGTAGAAGCCGGTCCTAAAAT 58.486 43.478 1.90 0.00 0.00 1.82
4118 4211 4.133013 TGTAGAAGCCGGTCCTAAAATC 57.867 45.455 1.90 0.00 0.00 2.17
4119 4212 2.311124 AGAAGCCGGTCCTAAAATCG 57.689 50.000 1.90 0.00 0.00 3.34
4120 4213 1.553704 AGAAGCCGGTCCTAAAATCGT 59.446 47.619 1.90 0.00 0.00 3.73
4121 4214 2.027469 AGAAGCCGGTCCTAAAATCGTT 60.027 45.455 1.90 0.00 0.00 3.85
4122 4215 1.734163 AGCCGGTCCTAAAATCGTTG 58.266 50.000 1.90 0.00 0.00 4.10
4123 4216 0.730840 GCCGGTCCTAAAATCGTTGG 59.269 55.000 1.90 0.00 0.00 3.77
4124 4217 1.375551 CCGGTCCTAAAATCGTTGGG 58.624 55.000 0.00 0.00 0.00 4.12
4125 4218 1.375551 CGGTCCTAAAATCGTTGGGG 58.624 55.000 0.00 0.00 0.00 4.96
4126 4219 1.758936 GGTCCTAAAATCGTTGGGGG 58.241 55.000 0.00 0.00 0.00 5.40
4127 4220 1.100510 GTCCTAAAATCGTTGGGGGC 58.899 55.000 0.00 0.00 0.00 5.80
4128 4221 0.996583 TCCTAAAATCGTTGGGGGCT 59.003 50.000 0.00 0.00 0.00 5.19
4129 4222 1.356398 TCCTAAAATCGTTGGGGGCTT 59.644 47.619 0.00 0.00 0.00 4.35
4130 4223 1.749063 CCTAAAATCGTTGGGGGCTTC 59.251 52.381 0.00 0.00 0.00 3.86
4131 4224 2.620627 CCTAAAATCGTTGGGGGCTTCT 60.621 50.000 0.00 0.00 0.00 2.85
4132 4225 2.891191 AAAATCGTTGGGGGCTTCTA 57.109 45.000 0.00 0.00 0.00 2.10
4133 4226 2.891191 AAATCGTTGGGGGCTTCTAA 57.109 45.000 0.00 0.00 0.00 2.10
4134 4227 2.891191 AATCGTTGGGGGCTTCTAAA 57.109 45.000 0.00 0.00 0.00 1.85
4135 4228 2.891191 ATCGTTGGGGGCTTCTAAAA 57.109 45.000 0.00 0.00 0.00 1.52
4136 4229 2.891191 TCGTTGGGGGCTTCTAAAAT 57.109 45.000 0.00 0.00 0.00 1.82
4137 4230 4.513406 ATCGTTGGGGGCTTCTAAAATA 57.487 40.909 0.00 0.00 0.00 1.40
4138 4231 3.881220 TCGTTGGGGGCTTCTAAAATAG 58.119 45.455 0.00 0.00 0.00 1.73
4139 4232 3.264964 TCGTTGGGGGCTTCTAAAATAGT 59.735 43.478 0.00 0.00 0.00 2.12
4140 4233 4.014406 CGTTGGGGGCTTCTAAAATAGTT 58.986 43.478 0.00 0.00 0.00 2.24
4141 4234 5.045724 TCGTTGGGGGCTTCTAAAATAGTTA 60.046 40.000 0.00 0.00 0.00 2.24
4142 4235 5.296035 CGTTGGGGGCTTCTAAAATAGTTAG 59.704 44.000 0.00 0.00 0.00 2.34
4143 4236 4.788679 TGGGGGCTTCTAAAATAGTTAGC 58.211 43.478 0.00 0.00 35.41 3.09
4144 4237 4.142790 GGGGGCTTCTAAAATAGTTAGCC 58.857 47.826 17.31 17.31 45.37 3.93
4145 4238 3.813724 GGGGCTTCTAAAATAGTTAGCCG 59.186 47.826 18.17 0.00 46.18 5.52
4146 4239 4.443881 GGGGCTTCTAAAATAGTTAGCCGA 60.444 45.833 18.17 0.00 46.18 5.54
4147 4240 5.121105 GGGCTTCTAAAATAGTTAGCCGAA 58.879 41.667 18.17 0.00 46.18 4.30
4148 4241 5.236695 GGGCTTCTAAAATAGTTAGCCGAAG 59.763 44.000 18.17 4.47 46.18 3.79
4149 4242 5.277393 GGCTTCTAAAATAGTTAGCCGAAGC 60.277 44.000 11.08 11.08 41.26 3.86
4150 4243 5.277393 GCTTCTAAAATAGTTAGCCGAAGCC 60.277 44.000 8.93 0.00 41.25 4.35
4151 4244 4.700700 TCTAAAATAGTTAGCCGAAGCCC 58.299 43.478 0.00 0.00 41.25 5.19
4152 4245 3.359695 AAAATAGTTAGCCGAAGCCCA 57.640 42.857 0.00 0.00 41.25 5.36
4153 4246 3.359695 AAATAGTTAGCCGAAGCCCAA 57.640 42.857 0.00 0.00 41.25 4.12
4154 4247 3.359695 AATAGTTAGCCGAAGCCCAAA 57.640 42.857 0.00 0.00 41.25 3.28
4155 4248 2.863132 TAGTTAGCCGAAGCCCAAAA 57.137 45.000 0.00 0.00 41.25 2.44
4156 4249 1.989706 AGTTAGCCGAAGCCCAAAAA 58.010 45.000 0.00 0.00 41.25 1.94
4172 4265 4.834911 AAAAATTCGGGGGCGACT 57.165 50.000 0.00 0.00 0.00 4.18
4173 4266 3.045518 AAAAATTCGGGGGCGACTT 57.954 47.368 0.00 0.00 0.00 3.01
4174 4267 0.885879 AAAAATTCGGGGGCGACTTC 59.114 50.000 0.00 0.00 0.00 3.01
4175 4268 0.037734 AAAATTCGGGGGCGACTTCT 59.962 50.000 0.00 0.00 0.00 2.85
4176 4269 0.906775 AAATTCGGGGGCGACTTCTA 59.093 50.000 0.00 0.00 0.00 2.10
4177 4270 0.464452 AATTCGGGGGCGACTTCTAG 59.536 55.000 0.00 0.00 0.00 2.43
4178 4271 0.396695 ATTCGGGGGCGACTTCTAGA 60.397 55.000 0.00 0.00 0.00 2.43
4179 4272 0.612732 TTCGGGGGCGACTTCTAGAA 60.613 55.000 4.81 4.81 0.00 2.10
4180 4273 0.396695 TCGGGGGCGACTTCTAGAAT 60.397 55.000 5.44 0.00 0.00 2.40
4181 4274 1.133699 TCGGGGGCGACTTCTAGAATA 60.134 52.381 5.44 0.00 0.00 1.75
4182 4275 1.684983 CGGGGGCGACTTCTAGAATAA 59.315 52.381 5.44 0.00 0.00 1.40
4183 4276 2.288273 CGGGGGCGACTTCTAGAATAAG 60.288 54.545 5.44 0.00 0.00 1.73
4184 4277 2.699321 GGGGGCGACTTCTAGAATAAGT 59.301 50.000 5.44 0.00 39.84 2.24
4185 4278 3.134262 GGGGGCGACTTCTAGAATAAGTT 59.866 47.826 5.44 0.00 37.31 2.66
4186 4279 4.120589 GGGGCGACTTCTAGAATAAGTTG 58.879 47.826 5.44 5.83 40.10 3.16
4187 4280 4.120589 GGGCGACTTCTAGAATAAGTTGG 58.879 47.826 5.44 0.00 38.35 3.77
4188 4281 4.120589 GGCGACTTCTAGAATAAGTTGGG 58.879 47.826 5.44 0.00 38.35 4.12
4189 4282 4.120589 GCGACTTCTAGAATAAGTTGGGG 58.879 47.826 5.44 0.00 38.35 4.96
4190 4283 4.142004 GCGACTTCTAGAATAAGTTGGGGA 60.142 45.833 5.44 0.00 38.35 4.81
4191 4284 5.453480 GCGACTTCTAGAATAAGTTGGGGAT 60.453 44.000 5.44 0.00 38.35 3.85
4192 4285 5.986135 CGACTTCTAGAATAAGTTGGGGATG 59.014 44.000 5.44 0.00 37.31 3.51
4193 4286 6.253946 ACTTCTAGAATAAGTTGGGGATGG 57.746 41.667 5.44 0.00 33.39 3.51
4194 4287 5.970640 ACTTCTAGAATAAGTTGGGGATGGA 59.029 40.000 5.44 0.00 33.39 3.41
4195 4288 6.100424 ACTTCTAGAATAAGTTGGGGATGGAG 59.900 42.308 5.44 0.00 33.39 3.86
4196 4289 3.584733 AGAATAAGTTGGGGATGGAGC 57.415 47.619 0.00 0.00 0.00 4.70
4197 4290 2.158755 AGAATAAGTTGGGGATGGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
4198 4291 0.474184 ATAAGTTGGGGATGGAGCGG 59.526 55.000 0.00 0.00 0.00 5.52
4199 4292 2.265467 TAAGTTGGGGATGGAGCGGC 62.265 60.000 0.00 0.00 0.00 6.53
4200 4293 4.115199 GTTGGGGATGGAGCGGCT 62.115 66.667 0.00 0.00 0.00 5.52
4201 4294 3.338250 TTGGGGATGGAGCGGCTT 61.338 61.111 2.97 0.00 0.00 4.35
4202 4295 1.998438 TTGGGGATGGAGCGGCTTA 60.998 57.895 2.97 0.00 0.00 3.09
4203 4296 1.352622 TTGGGGATGGAGCGGCTTAT 61.353 55.000 2.97 1.79 0.00 1.73
4204 4297 1.302832 GGGGATGGAGCGGCTTATG 60.303 63.158 2.97 0.00 0.00 1.90
4205 4298 1.968540 GGGATGGAGCGGCTTATGC 60.969 63.158 2.97 7.51 38.76 3.14
4220 4313 4.734398 CTTATGCCATAAGCCACCAAAA 57.266 40.909 11.31 0.00 42.71 2.44
4221 4314 4.685924 CTTATGCCATAAGCCACCAAAAG 58.314 43.478 11.31 0.00 42.71 2.27
4222 4315 0.607620 TGCCATAAGCCACCAAAAGC 59.392 50.000 0.00 0.00 42.71 3.51
4223 4316 0.897621 GCCATAAGCCACCAAAAGCT 59.102 50.000 0.00 0.00 42.40 3.74
4224 4317 1.404583 GCCATAAGCCACCAAAAGCTG 60.405 52.381 0.00 0.00 39.87 4.24
4225 4318 1.895131 CCATAAGCCACCAAAAGCTGT 59.105 47.619 0.00 0.00 39.87 4.40
4226 4319 2.094545 CCATAAGCCACCAAAAGCTGTC 60.095 50.000 0.00 0.00 39.87 3.51
4227 4320 2.356665 TAAGCCACCAAAAGCTGTCA 57.643 45.000 0.00 0.00 39.87 3.58
4228 4321 1.484038 AAGCCACCAAAAGCTGTCAA 58.516 45.000 0.00 0.00 39.87 3.18
4229 4322 1.484038 AGCCACCAAAAGCTGTCAAA 58.516 45.000 0.00 0.00 38.11 2.69
4230 4323 1.830477 AGCCACCAAAAGCTGTCAAAA 59.170 42.857 0.00 0.00 38.11 2.44
4231 4324 2.159057 AGCCACCAAAAGCTGTCAAAAG 60.159 45.455 0.00 0.00 38.11 2.27
4232 4325 2.159114 GCCACCAAAAGCTGTCAAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
4233 4326 3.678529 GCCACCAAAAGCTGTCAAAAGAA 60.679 43.478 0.00 0.00 0.00 2.52
4234 4327 3.865164 CCACCAAAAGCTGTCAAAAGAAC 59.135 43.478 0.00 0.00 0.00 3.01
4235 4328 4.381932 CCACCAAAAGCTGTCAAAAGAACT 60.382 41.667 0.00 0.00 0.00 3.01
4236 4329 4.563976 CACCAAAAGCTGTCAAAAGAACTG 59.436 41.667 0.00 0.00 0.00 3.16
4237 4330 4.462483 ACCAAAAGCTGTCAAAAGAACTGA 59.538 37.500 0.00 0.00 0.00 3.41
4238 4331 5.047377 ACCAAAAGCTGTCAAAAGAACTGAA 60.047 36.000 0.00 0.00 0.00 3.02
4239 4332 5.289434 CCAAAAGCTGTCAAAAGAACTGAAC 59.711 40.000 0.00 0.00 0.00 3.18
4240 4333 4.639135 AAGCTGTCAAAAGAACTGAACC 57.361 40.909 0.00 0.00 0.00 3.62
4241 4334 3.620488 AGCTGTCAAAAGAACTGAACCA 58.380 40.909 0.00 0.00 0.00 3.67
4242 4335 4.210331 AGCTGTCAAAAGAACTGAACCAT 58.790 39.130 0.00 0.00 0.00 3.55
4243 4336 5.376625 AGCTGTCAAAAGAACTGAACCATA 58.623 37.500 0.00 0.00 0.00 2.74
4244 4337 5.471456 AGCTGTCAAAAGAACTGAACCATAG 59.529 40.000 0.00 0.00 0.00 2.23
4245 4338 5.470098 GCTGTCAAAAGAACTGAACCATAGA 59.530 40.000 0.00 0.00 0.00 1.98
4246 4339 6.017109 GCTGTCAAAAGAACTGAACCATAGAA 60.017 38.462 0.00 0.00 0.00 2.10
4247 4340 7.308830 GCTGTCAAAAGAACTGAACCATAGAAT 60.309 37.037 0.00 0.00 0.00 2.40
4248 4341 7.874940 TGTCAAAAGAACTGAACCATAGAATG 58.125 34.615 0.00 0.00 0.00 2.67
4249 4342 7.502226 TGTCAAAAGAACTGAACCATAGAATGT 59.498 33.333 0.00 0.00 0.00 2.71
4256 4349 3.189606 TGAACCATAGAATGTCCACCCT 58.810 45.455 0.00 0.00 0.00 4.34
4264 4357 4.255510 AGAATGTCCACCCTAATGCAAT 57.744 40.909 0.00 0.00 0.00 3.56
4271 4364 4.335594 GTCCACCCTAATGCAATCAACTAC 59.664 45.833 0.00 0.00 0.00 2.73
4282 4375 3.559655 GCAATCAACTACGGCATCATACA 59.440 43.478 0.00 0.00 0.00 2.29
4335 4428 4.646040 ACATGGTGTTATGCTGCATTATGT 59.354 37.500 21.56 16.59 0.00 2.29
4352 4445 1.102809 TGTTGTGCAGGAAGCCAGTG 61.103 55.000 0.00 0.00 44.83 3.66
4373 4466 7.496591 CCAGTGAGGTAGTTGTAACTTGTAAAA 59.503 37.037 2.20 0.00 40.37 1.52
4374 4467 8.885722 CAGTGAGGTAGTTGTAACTTGTAAAAA 58.114 33.333 2.20 0.00 40.37 1.94
4399 4492 9.990868 AAATGTTTGGTATATTTAGAAGGGTCT 57.009 29.630 0.00 0.00 37.95 3.85
4400 4493 9.628500 AATGTTTGGTATATTTAGAAGGGTCTC 57.372 33.333 0.00 0.00 35.12 3.36
4401 4494 8.388656 TGTTTGGTATATTTAGAAGGGTCTCT 57.611 34.615 0.00 0.00 35.12 3.10
4402 4495 8.832735 TGTTTGGTATATTTAGAAGGGTCTCTT 58.167 33.333 0.00 0.00 38.65 2.85
4403 4496 9.110502 GTTTGGTATATTTAGAAGGGTCTCTTG 57.889 37.037 0.00 0.00 35.50 3.02
4404 4497 7.989947 TGGTATATTTAGAAGGGTCTCTTGT 57.010 36.000 0.00 0.00 35.50 3.16
4405 4498 8.388656 TGGTATATTTAGAAGGGTCTCTTGTT 57.611 34.615 0.00 0.00 35.50 2.83
4406 4499 9.496710 TGGTATATTTAGAAGGGTCTCTTGTTA 57.503 33.333 0.00 0.00 35.50 2.41
4443 4536 0.734889 GGCCACATCCAAGAACGATG 59.265 55.000 0.00 0.00 42.37 3.84
4444 4537 0.734889 GCCACATCCAAGAACGATGG 59.265 55.000 0.00 0.00 41.22 3.51
4446 4539 2.009774 CCACATCCAAGAACGATGGTC 58.990 52.381 0.00 0.00 41.22 4.02
4447 4540 1.660607 CACATCCAAGAACGATGGTCG 59.339 52.381 0.00 0.00 46.93 4.79
4448 4541 0.652592 CATCCAAGAACGATGGTCGC 59.347 55.000 0.00 0.00 45.12 5.19
4450 4543 0.034198 TCCAAGAACGATGGTCGCAA 59.966 50.000 0.00 0.00 45.12 4.85
4451 4544 1.086696 CCAAGAACGATGGTCGCAAT 58.913 50.000 0.00 0.00 45.12 3.56
4463 4558 4.963276 TGGTCGCAATAATTTTCTGAGG 57.037 40.909 0.00 0.00 0.00 3.86
4495 4590 3.882888 TGCCAAACAGTCTTTACTTCCAG 59.117 43.478 0.00 0.00 31.97 3.86
4541 4644 3.275617 ACTGCAGTTGAACACTACCAA 57.724 42.857 15.25 0.00 32.76 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.118408 GCAGATGTCCAATACCCTGTACA 60.118 47.826 0.00 0.00 33.05 2.90
19 20 2.107953 GGAGCCTCGCAGATGTCC 59.892 66.667 0.00 0.00 33.89 4.02
57 58 6.860080 AGACGATTTGTTCTTCTACCGATAA 58.140 36.000 0.00 0.00 31.55 1.75
162 163 6.364701 TGGATATAGTTCCAGGAAATTGTGG 58.635 40.000 7.62 0.00 40.90 4.17
179 180 3.007831 TCCTTGTCATGCGCATGGATATA 59.992 43.478 41.21 24.60 39.24 0.86
185 186 0.522626 TGTTCCTTGTCATGCGCATG 59.477 50.000 38.48 38.48 40.09 4.06
227 236 2.251409 ACCTCTCATCAATCATGCCG 57.749 50.000 0.00 0.00 31.70 5.69
241 250 6.014840 TGGAACTGTTACGAGAATTAACCTCT 60.015 38.462 0.00 0.00 0.00 3.69
255 304 6.801539 TCAGAAATCATGTGGAACTGTTAC 57.198 37.500 0.00 0.00 38.04 2.50
490 548 3.056607 GCTGGATGTTAACAAGCCAATGT 60.057 43.478 24.91 4.74 35.12 2.71
511 569 1.067071 ACTAGTGGGCGAACTAACAGC 60.067 52.381 0.00 0.00 32.35 4.40
694 752 1.497278 CGACCAACACAATCGCTGG 59.503 57.895 0.00 0.00 34.95 4.85
873 934 9.612620 AAGCAGTCTTTTATTGATTTTCGTAAG 57.387 29.630 0.00 0.00 0.00 2.34
912 999 4.350816 TGGATTGAAGAGAAGGAAAGGACA 59.649 41.667 0.00 0.00 0.00 4.02
963 1050 2.508361 GCAATGGCTATTGGTGGCT 58.492 52.632 22.46 0.00 43.12 4.75
976 1063 2.126228 CACCGGCTTGCAGCAATG 60.126 61.111 8.67 4.31 44.75 2.82
977 1064 1.747325 AAACACCGGCTTGCAGCAAT 61.747 50.000 8.67 0.00 44.75 3.56
1034 1121 3.746949 CTCTCCCACTCGGCCATGC 62.747 68.421 2.24 0.00 0.00 4.06
1035 1122 2.503061 CTCTCCCACTCGGCCATG 59.497 66.667 2.24 0.00 0.00 3.66
1036 1123 2.765807 CCTCTCCCACTCGGCCAT 60.766 66.667 2.24 0.00 0.00 4.40
1039 1126 2.043248 TACCCTCTCCCACTCGGC 60.043 66.667 0.00 0.00 0.00 5.54
1040 1127 1.757340 GGTACCCTCTCCCACTCGG 60.757 68.421 0.00 0.00 0.00 4.63
1042 1129 1.486726 CATTGGTACCCTCTCCCACTC 59.513 57.143 10.07 0.00 0.00 3.51
1043 1130 1.203440 ACATTGGTACCCTCTCCCACT 60.203 52.381 10.07 0.00 0.00 4.00
1044 1131 1.286248 ACATTGGTACCCTCTCCCAC 58.714 55.000 10.07 0.00 0.00 4.61
1045 1132 1.913419 GAACATTGGTACCCTCTCCCA 59.087 52.381 10.07 0.00 0.00 4.37
1046 1133 2.197465 AGAACATTGGTACCCTCTCCC 58.803 52.381 10.07 0.00 0.00 4.30
1047 1134 3.263425 TCAAGAACATTGGTACCCTCTCC 59.737 47.826 10.07 0.00 0.00 3.71
1048 1135 4.553330 TCAAGAACATTGGTACCCTCTC 57.447 45.455 10.07 0.00 0.00 3.20
1053 1140 5.104259 AGAGGATCAAGAACATTGGTACC 57.896 43.478 4.43 4.43 37.82 3.34
1056 1143 5.246981 TGAAGAGGATCAAGAACATTGGT 57.753 39.130 0.00 0.00 37.82 3.67
1059 1146 6.324601 AGGATGAAGAGGATCAAGAACATT 57.675 37.500 0.00 0.00 37.82 2.71
1128 1215 0.389817 CTTGAGGCACGAACCGATCA 60.390 55.000 0.00 0.00 33.69 2.92
1251 1338 2.988010 TAGCGGCAATCTTGATGTCT 57.012 45.000 1.45 0.00 0.00 3.41
1263 1350 0.462581 CCAGAGATGCTTTAGCGGCA 60.463 55.000 1.45 0.00 45.83 5.69
1293 1380 5.297029 GTCAAGGTAAAGTGGAGATAATGGC 59.703 44.000 0.00 0.00 0.00 4.40
1302 1389 2.103432 TCTTGCGTCAAGGTAAAGTGGA 59.897 45.455 16.13 0.00 41.33 4.02
1377 1464 3.490078 GCAAGAAGTAGAGACGGATCCAG 60.490 52.174 13.41 7.30 0.00 3.86
1386 1473 3.632604 CGGTGATAGGCAAGAAGTAGAGA 59.367 47.826 0.00 0.00 0.00 3.10
1398 1485 0.180406 ATTGGGTGTCGGTGATAGGC 59.820 55.000 0.00 0.00 0.00 3.93
1410 1497 2.159382 GTGGTGAGGTTGTATTGGGTG 58.841 52.381 0.00 0.00 0.00 4.61
1412 1499 2.436417 CAGTGGTGAGGTTGTATTGGG 58.564 52.381 0.00 0.00 0.00 4.12
1443 1530 0.322648 CCATGCTCTCAGTGGACACA 59.677 55.000 5.14 0.00 34.94 3.72
1464 1551 3.769300 TGAACGAGAAATCATGGAGGAGA 59.231 43.478 0.00 0.00 0.00 3.71
1467 1554 4.450419 GCTATGAACGAGAAATCATGGAGG 59.550 45.833 3.69 0.00 36.86 4.30
1482 1569 3.010420 GTTTGGAGGACTGGCTATGAAC 58.990 50.000 0.00 0.00 0.00 3.18
1563 1650 6.429692 TGAATGCTATCGAGTTTTTCTTTGGA 59.570 34.615 0.00 0.00 0.00 3.53
1596 1683 0.179097 GGGCTGAGACAACCTCGATC 60.179 60.000 0.00 0.00 44.92 3.69
1731 1818 2.412089 GCCTAGTGTGTCATTGAACGAC 59.588 50.000 0.00 0.00 0.00 4.34
1737 1824 2.744202 GGTTCTGCCTAGTGTGTCATTG 59.256 50.000 0.00 0.00 0.00 2.82
1928 2015 6.260663 ACCATTACCCAGGTTATGTTGAATT 58.739 36.000 13.24 0.00 34.49 2.17
1941 2028 1.098050 GCTCTGCAACCATTACCCAG 58.902 55.000 0.00 0.00 0.00 4.45
1945 2032 1.376609 CCCGGCTCTGCAACCATTAC 61.377 60.000 0.00 0.00 0.00 1.89
1946 2033 1.077787 CCCGGCTCTGCAACCATTA 60.078 57.895 0.00 0.00 0.00 1.90
2127 2214 5.535406 GGAATTGATGATGCTGGAAGATTCT 59.465 40.000 0.00 0.00 34.07 2.40
2130 2217 4.583489 GTGGAATTGATGATGCTGGAAGAT 59.417 41.667 0.00 0.00 34.07 2.40
2177 2264 3.554692 CGCCGGAGTCGATTGTGC 61.555 66.667 5.05 0.00 39.00 4.57
2291 2378 3.129638 GCCAGTCAGTGTCCTCTTACTAG 59.870 52.174 0.00 0.00 0.00 2.57
2300 2387 0.250234 TGCTATGCCAGTCAGTGTCC 59.750 55.000 0.00 0.00 0.00 4.02
2352 2439 3.497262 GGTTTCGCCTGTAGCATATAACC 59.503 47.826 0.00 0.00 44.04 2.85
2409 2496 5.177696 CGAGTTTAGTGGAAGAAACCAAGAG 59.822 44.000 0.00 0.00 41.87 2.85
2454 2541 2.125065 CTGGAGAGCCTGCTGCAG 60.125 66.667 22.44 22.44 45.65 4.41
2562 2649 3.915437 TTCGTGGCTTTCTGAATTTCC 57.085 42.857 0.00 0.00 0.00 3.13
2589 2676 4.277423 ACACCAATAACACCCTTTTCTTCG 59.723 41.667 0.00 0.00 0.00 3.79
2667 2754 1.952296 GATGGATTGCCTCGCTTGATT 59.048 47.619 0.00 0.00 34.31 2.57
2731 2818 1.202031 GCGGTGGCGAAGTTTTGATAG 60.202 52.381 0.00 0.00 0.00 2.08
2829 2916 4.284490 TCACCATACAGATGATCCCTTAGC 59.716 45.833 0.00 0.00 34.73 3.09
3001 3088 0.392998 AAATCAGCGACCTTGGCGAT 60.393 50.000 0.00 0.00 35.20 4.58
3099 3186 2.160205 TGACGTCTGAAGTACTCTGGG 58.840 52.381 17.92 0.00 0.00 4.45
3189 3276 2.158564 TGGAAGAGATGGATTGATGGCC 60.159 50.000 0.00 0.00 0.00 5.36
3204 3291 4.594920 AGATTCACTTGGTCTCTTGGAAGA 59.405 41.667 0.00 0.00 0.00 2.87
3228 3315 3.391382 GTACGGGCCCACTCAGCT 61.391 66.667 24.92 0.00 0.00 4.24
3231 3318 2.665089 CCATGTACGGGCCCACTCA 61.665 63.158 24.92 17.08 0.00 3.41
3291 3378 3.830192 GGCCTGATTTGCCCTGCG 61.830 66.667 0.00 0.00 43.33 5.18
3387 3474 5.988561 GGCAAATTCAAGTTTCCATAACACA 59.011 36.000 0.00 0.00 0.00 3.72
3391 3478 5.700373 GCAAGGCAAATTCAAGTTTCCATAA 59.300 36.000 0.00 0.00 0.00 1.90
3444 3531 3.405093 GATCCCATCACTGGCGCCA 62.405 63.158 30.59 30.59 41.64 5.69
3463 3550 2.089980 CACCTCCAAGCTCTTCATTGG 58.910 52.381 0.00 0.00 46.09 3.16
3498 3585 7.311297 GGGATAGCATTACCAGATTTCTCCATA 60.311 40.741 0.00 0.00 0.00 2.74
3588 3675 7.287005 TGGGATCGAACAAGATATTACAGTACT 59.713 37.037 0.00 0.00 0.00 2.73
3606 3693 1.688735 GTGATGTCTGGATGGGATCGA 59.311 52.381 0.00 0.00 0.00 3.59
3607 3694 1.690893 AGTGATGTCTGGATGGGATCG 59.309 52.381 0.00 0.00 0.00 3.69
3671 3760 3.624861 AGCAGCCTATCACAAATTCTTCG 59.375 43.478 0.00 0.00 0.00 3.79
3858 3951 7.083062 TCAGCTGATGATGGAATTACCTTAT 57.917 36.000 13.74 0.00 34.38 1.73
3895 3988 9.607988 TTCTACGTTGGAATGATACAATACAAT 57.392 29.630 0.00 0.00 0.00 2.71
3897 3990 9.438228 TTTTCTACGTTGGAATGATACAATACA 57.562 29.630 0.00 0.00 0.00 2.29
3901 3994 8.330466 ACATTTTCTACGTTGGAATGATACAA 57.670 30.769 22.64 8.79 33.24 2.41
3902 3995 7.915293 ACATTTTCTACGTTGGAATGATACA 57.085 32.000 22.64 0.00 33.24 2.29
3903 3996 9.698617 GTAACATTTTCTACGTTGGAATGATAC 57.301 33.333 22.64 20.80 32.65 2.24
3904 3997 8.885722 GGTAACATTTTCTACGTTGGAATGATA 58.114 33.333 22.64 16.39 33.24 2.15
3933 4026 5.497474 ACGTTTTTCACCTAGCCATTCTAT 58.503 37.500 0.00 0.00 0.00 1.98
3953 4046 2.548057 CTGTGTGGCACAATTTCTACGT 59.452 45.455 23.90 0.00 44.08 3.57
3954 4047 2.665519 GCTGTGTGGCACAATTTCTACG 60.666 50.000 23.90 5.73 44.08 3.51
3966 4059 3.862642 GCTGATATAGGTAGCTGTGTGGC 60.863 52.174 4.27 0.01 34.70 5.01
3999 4092 8.882736 GTTCAATTTCTGTTTGGTTCAATTTCT 58.117 29.630 0.00 0.00 0.00 2.52
4000 4093 8.882736 AGTTCAATTTCTGTTTGGTTCAATTTC 58.117 29.630 0.00 0.00 0.00 2.17
4001 4094 8.791327 AGTTCAATTTCTGTTTGGTTCAATTT 57.209 26.923 0.00 0.00 0.00 1.82
4002 4095 9.883142 TTAGTTCAATTTCTGTTTGGTTCAATT 57.117 25.926 0.00 0.00 0.00 2.32
4003 4096 9.313118 GTTAGTTCAATTTCTGTTTGGTTCAAT 57.687 29.630 0.00 0.00 0.00 2.57
4004 4097 7.486551 CGTTAGTTCAATTTCTGTTTGGTTCAA 59.513 33.333 0.00 0.00 0.00 2.69
4005 4098 6.970043 CGTTAGTTCAATTTCTGTTTGGTTCA 59.030 34.615 0.00 0.00 0.00 3.18
4006 4099 6.416750 CCGTTAGTTCAATTTCTGTTTGGTTC 59.583 38.462 0.00 0.00 0.00 3.62
4007 4100 6.095720 TCCGTTAGTTCAATTTCTGTTTGGTT 59.904 34.615 0.00 0.00 0.00 3.67
4008 4101 5.591067 TCCGTTAGTTCAATTTCTGTTTGGT 59.409 36.000 0.00 0.00 0.00 3.67
4009 4102 5.912955 GTCCGTTAGTTCAATTTCTGTTTGG 59.087 40.000 0.00 0.00 0.00 3.28
4010 4103 6.491394 TGTCCGTTAGTTCAATTTCTGTTTG 58.509 36.000 0.00 0.00 0.00 2.93
4011 4104 6.687081 TGTCCGTTAGTTCAATTTCTGTTT 57.313 33.333 0.00 0.00 0.00 2.83
4012 4105 5.277828 GCTGTCCGTTAGTTCAATTTCTGTT 60.278 40.000 0.00 0.00 0.00 3.16
4013 4106 4.213482 GCTGTCCGTTAGTTCAATTTCTGT 59.787 41.667 0.00 0.00 0.00 3.41
4014 4107 4.213270 TGCTGTCCGTTAGTTCAATTTCTG 59.787 41.667 0.00 0.00 0.00 3.02
4015 4108 4.385825 TGCTGTCCGTTAGTTCAATTTCT 58.614 39.130 0.00 0.00 0.00 2.52
4016 4109 4.213482 ACTGCTGTCCGTTAGTTCAATTTC 59.787 41.667 0.00 0.00 0.00 2.17
4017 4110 4.134563 ACTGCTGTCCGTTAGTTCAATTT 58.865 39.130 0.00 0.00 0.00 1.82
4018 4111 3.740115 ACTGCTGTCCGTTAGTTCAATT 58.260 40.909 0.00 0.00 0.00 2.32
4019 4112 3.402628 ACTGCTGTCCGTTAGTTCAAT 57.597 42.857 0.00 0.00 0.00 2.57
4020 4113 2.869801 CAACTGCTGTCCGTTAGTTCAA 59.130 45.455 0.00 0.00 31.47 2.69
4021 4114 2.159014 ACAACTGCTGTCCGTTAGTTCA 60.159 45.455 0.00 0.00 29.87 3.18
4022 4115 2.221055 CACAACTGCTGTCCGTTAGTTC 59.779 50.000 0.00 0.00 35.47 3.01
4023 4116 2.159014 TCACAACTGCTGTCCGTTAGTT 60.159 45.455 0.00 0.00 35.47 2.24
4024 4117 1.411246 TCACAACTGCTGTCCGTTAGT 59.589 47.619 0.00 0.00 35.47 2.24
4025 4118 2.148916 TCACAACTGCTGTCCGTTAG 57.851 50.000 0.00 0.00 35.47 2.34
4026 4119 2.605837 TTCACAACTGCTGTCCGTTA 57.394 45.000 0.00 0.00 35.47 3.18
4027 4120 1.873591 GATTCACAACTGCTGTCCGTT 59.126 47.619 0.00 0.00 35.47 4.44
4028 4121 1.512926 GATTCACAACTGCTGTCCGT 58.487 50.000 0.00 0.00 35.47 4.69
4029 4122 0.798776 GGATTCACAACTGCTGTCCG 59.201 55.000 0.00 0.00 35.47 4.79
4030 4123 2.191128 AGGATTCACAACTGCTGTCC 57.809 50.000 0.00 0.00 35.47 4.02
4031 4124 6.341316 TCTATAAGGATTCACAACTGCTGTC 58.659 40.000 0.00 0.00 35.47 3.51
4032 4125 6.299805 TCTATAAGGATTCACAACTGCTGT 57.700 37.500 0.00 0.00 39.56 4.40
4033 4126 7.798596 ATTCTATAAGGATTCACAACTGCTG 57.201 36.000 0.00 0.00 0.00 4.41
4034 4127 9.905713 TTAATTCTATAAGGATTCACAACTGCT 57.094 29.630 0.00 0.00 0.00 4.24
4051 4144 9.914834 TGGGTGCAAACTATAACTTAATTCTAT 57.085 29.630 0.00 0.00 0.00 1.98
4052 4145 9.169592 GTGGGTGCAAACTATAACTTAATTCTA 57.830 33.333 0.00 0.00 0.00 2.10
4053 4146 7.148306 CGTGGGTGCAAACTATAACTTAATTCT 60.148 37.037 0.00 0.00 0.00 2.40
4054 4147 6.964934 CGTGGGTGCAAACTATAACTTAATTC 59.035 38.462 0.00 0.00 0.00 2.17
4055 4148 6.624204 GCGTGGGTGCAAACTATAACTTAATT 60.624 38.462 0.00 0.00 34.15 1.40
4056 4149 5.163693 GCGTGGGTGCAAACTATAACTTAAT 60.164 40.000 0.00 0.00 34.15 1.40
4057 4150 4.154556 GCGTGGGTGCAAACTATAACTTAA 59.845 41.667 0.00 0.00 34.15 1.85
4058 4151 3.685756 GCGTGGGTGCAAACTATAACTTA 59.314 43.478 0.00 0.00 34.15 2.24
4059 4152 2.486592 GCGTGGGTGCAAACTATAACTT 59.513 45.455 0.00 0.00 34.15 2.66
4060 4153 2.081462 GCGTGGGTGCAAACTATAACT 58.919 47.619 0.00 0.00 34.15 2.24
4061 4154 1.201987 CGCGTGGGTGCAAACTATAAC 60.202 52.381 0.00 0.00 34.15 1.89
4062 4155 1.080298 CGCGTGGGTGCAAACTATAA 58.920 50.000 0.00 0.00 34.15 0.98
4063 4156 0.037139 ACGCGTGGGTGCAAACTATA 60.037 50.000 12.93 0.00 34.15 1.31
4064 4157 1.296056 GACGCGTGGGTGCAAACTAT 61.296 55.000 20.70 0.00 34.15 2.12
4065 4158 1.957186 GACGCGTGGGTGCAAACTA 60.957 57.895 20.70 0.00 34.15 2.24
4066 4159 3.276846 GACGCGTGGGTGCAAACT 61.277 61.111 20.70 0.00 34.15 2.66
4067 4160 1.500512 TAAGACGCGTGGGTGCAAAC 61.501 55.000 20.70 0.00 34.15 2.93
4068 4161 0.814410 TTAAGACGCGTGGGTGCAAA 60.814 50.000 20.70 0.00 34.15 3.68
4069 4162 1.225376 CTTAAGACGCGTGGGTGCAA 61.225 55.000 20.70 0.49 34.15 4.08
4070 4163 1.666553 CTTAAGACGCGTGGGTGCA 60.667 57.895 20.70 0.00 34.15 4.57
4071 4164 0.739813 ATCTTAAGACGCGTGGGTGC 60.740 55.000 20.70 0.13 0.00 5.01
4072 4165 0.999406 CATCTTAAGACGCGTGGGTG 59.001 55.000 20.70 3.98 0.00 4.61
4073 4166 0.606604 ACATCTTAAGACGCGTGGGT 59.393 50.000 20.70 3.34 0.00 4.51
4074 4167 1.278238 GACATCTTAAGACGCGTGGG 58.722 55.000 20.70 1.43 0.00 4.61
4075 4168 1.278238 GGACATCTTAAGACGCGTGG 58.722 55.000 20.70 1.03 0.00 4.94
4076 4169 1.135083 AGGGACATCTTAAGACGCGTG 60.135 52.381 20.70 0.43 0.00 5.34
4077 4170 1.183549 AGGGACATCTTAAGACGCGT 58.816 50.000 13.85 13.85 0.00 6.01
4078 4171 1.927174 CAAGGGACATCTTAAGACGCG 59.073 52.381 7.48 3.53 0.00 6.01
4079 4172 2.973945 ACAAGGGACATCTTAAGACGC 58.026 47.619 7.48 3.98 0.00 5.19
4080 4173 5.578005 TCTACAAGGGACATCTTAAGACG 57.422 43.478 7.48 1.23 0.00 4.18
4081 4174 5.813157 GCTTCTACAAGGGACATCTTAAGAC 59.187 44.000 7.48 0.00 0.00 3.01
4082 4175 5.104900 GGCTTCTACAAGGGACATCTTAAGA 60.105 44.000 7.82 7.82 0.00 2.10
4096 4189 4.510571 GATTTTAGGACCGGCTTCTACAA 58.489 43.478 0.00 0.78 0.00 2.41
4098 4191 3.121544 CGATTTTAGGACCGGCTTCTAC 58.878 50.000 0.00 0.00 0.00 2.59
4099 4192 2.762327 ACGATTTTAGGACCGGCTTCTA 59.238 45.455 0.00 0.00 0.00 2.10
4100 4193 1.553704 ACGATTTTAGGACCGGCTTCT 59.446 47.619 0.00 0.00 0.00 2.85
4101 4194 2.019948 ACGATTTTAGGACCGGCTTC 57.980 50.000 0.00 0.00 0.00 3.86
4102 4195 2.081462 CAACGATTTTAGGACCGGCTT 58.919 47.619 0.00 0.00 0.00 4.35
4103 4196 1.677820 CCAACGATTTTAGGACCGGCT 60.678 52.381 0.00 0.00 0.00 5.52
4104 4197 0.730840 CCAACGATTTTAGGACCGGC 59.269 55.000 0.00 0.00 0.00 6.13
4105 4198 1.375551 CCCAACGATTTTAGGACCGG 58.624 55.000 0.00 0.00 0.00 5.28
4106 4199 1.375551 CCCCAACGATTTTAGGACCG 58.624 55.000 0.00 0.00 0.00 4.79
4107 4200 1.758936 CCCCCAACGATTTTAGGACC 58.241 55.000 0.00 0.00 0.00 4.46
4108 4201 1.100510 GCCCCCAACGATTTTAGGAC 58.899 55.000 0.00 0.00 0.00 3.85
4109 4202 0.996583 AGCCCCCAACGATTTTAGGA 59.003 50.000 0.00 0.00 0.00 2.94
4110 4203 1.749063 GAAGCCCCCAACGATTTTAGG 59.251 52.381 0.00 0.00 0.00 2.69
4111 4204 2.723273 AGAAGCCCCCAACGATTTTAG 58.277 47.619 0.00 0.00 0.00 1.85
4112 4205 2.891191 AGAAGCCCCCAACGATTTTA 57.109 45.000 0.00 0.00 0.00 1.52
4113 4206 2.891191 TAGAAGCCCCCAACGATTTT 57.109 45.000 0.00 0.00 0.00 1.82
4114 4207 2.891191 TTAGAAGCCCCCAACGATTT 57.109 45.000 0.00 0.00 0.00 2.17
4115 4208 2.891191 TTTAGAAGCCCCCAACGATT 57.109 45.000 0.00 0.00 0.00 3.34
4116 4209 2.891191 TTTTAGAAGCCCCCAACGAT 57.109 45.000 0.00 0.00 0.00 3.73
4117 4210 2.891191 ATTTTAGAAGCCCCCAACGA 57.109 45.000 0.00 0.00 0.00 3.85
4118 4211 3.617284 ACTATTTTAGAAGCCCCCAACG 58.383 45.455 0.00 0.00 0.00 4.10
4119 4212 5.067413 GCTAACTATTTTAGAAGCCCCCAAC 59.933 44.000 0.00 0.00 34.53 3.77
4120 4213 5.198207 GCTAACTATTTTAGAAGCCCCCAA 58.802 41.667 0.00 0.00 34.53 4.12
4121 4214 4.385977 GGCTAACTATTTTAGAAGCCCCCA 60.386 45.833 15.62 0.00 44.86 4.96
4122 4215 4.142790 GGCTAACTATTTTAGAAGCCCCC 58.857 47.826 15.62 0.00 44.86 5.40
4123 4216 3.813724 CGGCTAACTATTTTAGAAGCCCC 59.186 47.826 18.36 4.73 46.31 5.80
4124 4217 4.700700 TCGGCTAACTATTTTAGAAGCCC 58.299 43.478 18.36 8.29 46.31 5.19
4125 4218 6.288426 CTTCGGCTAACTATTTTAGAAGCC 57.712 41.667 16.13 16.13 45.95 4.35
4127 4220 5.236695 GGGCTTCGGCTAACTATTTTAGAAG 59.763 44.000 0.00 0.00 41.44 2.85
4128 4221 5.121105 GGGCTTCGGCTAACTATTTTAGAA 58.879 41.667 0.00 0.00 41.44 2.10
4129 4222 4.162698 TGGGCTTCGGCTAACTATTTTAGA 59.837 41.667 0.00 0.00 41.44 2.10
4130 4223 4.448210 TGGGCTTCGGCTAACTATTTTAG 58.552 43.478 0.00 0.00 41.44 1.85
4131 4224 4.490899 TGGGCTTCGGCTAACTATTTTA 57.509 40.909 0.00 0.00 41.44 1.52
4132 4225 3.359695 TGGGCTTCGGCTAACTATTTT 57.640 42.857 0.00 0.00 41.44 1.82
4133 4226 3.359695 TTGGGCTTCGGCTAACTATTT 57.640 42.857 0.00 0.00 41.44 1.40
4134 4227 3.359695 TTTGGGCTTCGGCTAACTATT 57.640 42.857 0.00 0.00 41.44 1.73
4135 4228 3.359695 TTTTGGGCTTCGGCTAACTAT 57.640 42.857 0.00 0.00 41.44 2.12
4136 4229 2.863132 TTTTGGGCTTCGGCTAACTA 57.137 45.000 0.00 0.00 41.44 2.24
4137 4230 1.989706 TTTTTGGGCTTCGGCTAACT 58.010 45.000 0.00 0.00 41.44 2.24
4155 4248 4.834911 AGTCGCCCCCGAATTTTT 57.165 50.000 0.00 0.00 46.34 1.94
4159 4252 0.396695 TCTAGAAGTCGCCCCCGAAT 60.397 55.000 0.00 0.00 46.34 3.34
4160 4253 0.612732 TTCTAGAAGTCGCCCCCGAA 60.613 55.000 0.00 0.00 46.34 4.30
4161 4254 0.396695 ATTCTAGAAGTCGCCCCCGA 60.397 55.000 11.53 0.00 42.01 5.14
4162 4255 1.325355 TATTCTAGAAGTCGCCCCCG 58.675 55.000 11.53 0.00 0.00 5.73
4163 4256 2.699321 ACTTATTCTAGAAGTCGCCCCC 59.301 50.000 11.53 0.00 31.36 5.40
4164 4257 4.120589 CAACTTATTCTAGAAGTCGCCCC 58.879 47.826 11.53 0.00 36.10 5.80
4165 4258 4.120589 CCAACTTATTCTAGAAGTCGCCC 58.879 47.826 11.53 0.00 36.10 6.13
4166 4259 4.120589 CCCAACTTATTCTAGAAGTCGCC 58.879 47.826 11.53 0.00 36.10 5.54
4167 4260 4.120589 CCCCAACTTATTCTAGAAGTCGC 58.879 47.826 11.53 0.00 36.10 5.19
4168 4261 5.593679 TCCCCAACTTATTCTAGAAGTCG 57.406 43.478 11.53 4.00 36.10 4.18
4169 4262 6.099845 TCCATCCCCAACTTATTCTAGAAGTC 59.900 42.308 11.53 0.00 36.10 3.01
4170 4263 5.970640 TCCATCCCCAACTTATTCTAGAAGT 59.029 40.000 11.53 0.21 38.81 3.01
4171 4264 6.500589 TCCATCCCCAACTTATTCTAGAAG 57.499 41.667 11.53 0.00 0.00 2.85
4172 4265 5.163195 GCTCCATCCCCAACTTATTCTAGAA 60.163 44.000 7.82 7.82 0.00 2.10
4173 4266 4.348168 GCTCCATCCCCAACTTATTCTAGA 59.652 45.833 0.00 0.00 0.00 2.43
4174 4267 4.646572 GCTCCATCCCCAACTTATTCTAG 58.353 47.826 0.00 0.00 0.00 2.43
4175 4268 3.071023 CGCTCCATCCCCAACTTATTCTA 59.929 47.826 0.00 0.00 0.00 2.10
4176 4269 2.158755 CGCTCCATCCCCAACTTATTCT 60.159 50.000 0.00 0.00 0.00 2.40
4177 4270 2.222027 CGCTCCATCCCCAACTTATTC 58.778 52.381 0.00 0.00 0.00 1.75
4178 4271 1.133792 CCGCTCCATCCCCAACTTATT 60.134 52.381 0.00 0.00 0.00 1.40
4179 4272 0.474184 CCGCTCCATCCCCAACTTAT 59.526 55.000 0.00 0.00 0.00 1.73
4180 4273 1.912220 CCGCTCCATCCCCAACTTA 59.088 57.895 0.00 0.00 0.00 2.24
4181 4274 2.677228 CCGCTCCATCCCCAACTT 59.323 61.111 0.00 0.00 0.00 2.66
4182 4275 4.115199 GCCGCTCCATCCCCAACT 62.115 66.667 0.00 0.00 0.00 3.16
4183 4276 2.265467 TAAGCCGCTCCATCCCCAAC 62.265 60.000 0.00 0.00 0.00 3.77
4184 4277 1.352622 ATAAGCCGCTCCATCCCCAA 61.353 55.000 0.00 0.00 0.00 4.12
4185 4278 1.770110 ATAAGCCGCTCCATCCCCA 60.770 57.895 0.00 0.00 0.00 4.96
4186 4279 1.302832 CATAAGCCGCTCCATCCCC 60.303 63.158 0.00 0.00 0.00 4.81
4187 4280 1.968540 GCATAAGCCGCTCCATCCC 60.969 63.158 0.00 0.00 33.58 3.85
4188 4281 3.660621 GCATAAGCCGCTCCATCC 58.339 61.111 0.00 0.00 33.58 3.51
4203 4296 0.607620 GCTTTTGGTGGCTTATGGCA 59.392 50.000 0.22 0.22 46.87 4.92
4204 4297 0.897621 AGCTTTTGGTGGCTTATGGC 59.102 50.000 0.00 0.00 34.96 4.40
4205 4298 2.660189 CAGCTTTTGGTGGCTTATGG 57.340 50.000 0.00 0.00 43.61 2.74
4214 4307 4.462483 TCAGTTCTTTTGACAGCTTTTGGT 59.538 37.500 0.00 0.00 0.00 3.67
4215 4308 4.997565 TCAGTTCTTTTGACAGCTTTTGG 58.002 39.130 0.00 0.00 0.00 3.28
4216 4309 5.289434 GGTTCAGTTCTTTTGACAGCTTTTG 59.711 40.000 0.00 0.00 0.00 2.44
4217 4310 5.047377 TGGTTCAGTTCTTTTGACAGCTTTT 60.047 36.000 0.00 0.00 0.00 2.27
4218 4311 4.462483 TGGTTCAGTTCTTTTGACAGCTTT 59.538 37.500 0.00 0.00 0.00 3.51
4219 4312 4.016444 TGGTTCAGTTCTTTTGACAGCTT 58.984 39.130 0.00 0.00 0.00 3.74
4220 4313 3.620488 TGGTTCAGTTCTTTTGACAGCT 58.380 40.909 0.00 0.00 0.00 4.24
4221 4314 4.574599 ATGGTTCAGTTCTTTTGACAGC 57.425 40.909 0.00 0.00 0.00 4.40
4222 4315 7.496529 TTCTATGGTTCAGTTCTTTTGACAG 57.503 36.000 0.00 0.00 0.00 3.51
4223 4316 7.502226 ACATTCTATGGTTCAGTTCTTTTGACA 59.498 33.333 0.00 0.00 33.60 3.58
4224 4317 7.875971 ACATTCTATGGTTCAGTTCTTTTGAC 58.124 34.615 0.00 0.00 33.60 3.18
4225 4318 7.174946 GGACATTCTATGGTTCAGTTCTTTTGA 59.825 37.037 0.00 0.00 33.60 2.69
4226 4319 7.040478 TGGACATTCTATGGTTCAGTTCTTTTG 60.040 37.037 0.00 0.00 33.60 2.44
4227 4320 7.004086 TGGACATTCTATGGTTCAGTTCTTTT 58.996 34.615 0.00 0.00 33.60 2.27
4228 4321 6.431234 GTGGACATTCTATGGTTCAGTTCTTT 59.569 38.462 0.00 0.00 33.60 2.52
4229 4322 5.940470 GTGGACATTCTATGGTTCAGTTCTT 59.060 40.000 0.00 0.00 33.60 2.52
4230 4323 5.491982 GTGGACATTCTATGGTTCAGTTCT 58.508 41.667 0.00 0.00 33.60 3.01
4231 4324 4.636206 GGTGGACATTCTATGGTTCAGTTC 59.364 45.833 0.00 0.00 33.60 3.01
4232 4325 4.567747 GGGTGGACATTCTATGGTTCAGTT 60.568 45.833 0.00 0.00 33.60 3.16
4233 4326 3.054361 GGGTGGACATTCTATGGTTCAGT 60.054 47.826 0.00 0.00 33.60 3.41
4234 4327 3.200825 AGGGTGGACATTCTATGGTTCAG 59.799 47.826 0.00 0.00 33.60 3.02
4235 4328 3.189606 AGGGTGGACATTCTATGGTTCA 58.810 45.455 0.00 0.00 33.60 3.18
4236 4329 3.933861 AGGGTGGACATTCTATGGTTC 57.066 47.619 0.00 0.00 33.60 3.62
4237 4330 5.694995 CATTAGGGTGGACATTCTATGGTT 58.305 41.667 0.00 0.00 33.60 3.67
4238 4331 4.446311 GCATTAGGGTGGACATTCTATGGT 60.446 45.833 0.00 0.00 33.60 3.55
4239 4332 4.074970 GCATTAGGGTGGACATTCTATGG 58.925 47.826 0.00 0.00 33.60 2.74
4240 4333 4.717877 TGCATTAGGGTGGACATTCTATG 58.282 43.478 0.00 0.00 0.00 2.23
4241 4334 5.387113 TTGCATTAGGGTGGACATTCTAT 57.613 39.130 0.00 0.00 0.00 1.98
4242 4335 4.853468 TTGCATTAGGGTGGACATTCTA 57.147 40.909 0.00 0.00 0.00 2.10
4243 4336 3.737559 TTGCATTAGGGTGGACATTCT 57.262 42.857 0.00 0.00 0.00 2.40
4244 4337 3.953612 TGATTGCATTAGGGTGGACATTC 59.046 43.478 0.00 0.00 0.00 2.67
4245 4338 3.979911 TGATTGCATTAGGGTGGACATT 58.020 40.909 0.00 0.00 0.00 2.71
4246 4339 3.668141 TGATTGCATTAGGGTGGACAT 57.332 42.857 0.00 0.00 0.00 3.06
4247 4340 3.088532 GTTGATTGCATTAGGGTGGACA 58.911 45.455 0.00 0.00 0.00 4.02
4248 4341 3.356290 AGTTGATTGCATTAGGGTGGAC 58.644 45.455 0.00 0.00 0.00 4.02
4249 4342 3.737559 AGTTGATTGCATTAGGGTGGA 57.262 42.857 0.00 0.00 0.00 4.02
4256 4349 4.195416 TGATGCCGTAGTTGATTGCATTA 58.805 39.130 0.00 0.00 42.33 1.90
4264 4357 4.465632 AAGTGTATGATGCCGTAGTTGA 57.534 40.909 0.00 0.00 0.00 3.18
4271 4364 5.123186 TGAACCTAAAAAGTGTATGATGCCG 59.877 40.000 0.00 0.00 0.00 5.69
4335 4428 0.535780 CTCACTGGCTTCCTGCACAA 60.536 55.000 0.00 0.00 45.15 3.33
4373 4466 9.990868 AGACCCTTCTAAATATACCAAACATTT 57.009 29.630 0.00 0.00 0.00 2.32
4374 4467 9.628500 GAGACCCTTCTAAATATACCAAACATT 57.372 33.333 0.00 0.00 29.47 2.71
4375 4468 9.004231 AGAGACCCTTCTAAATATACCAAACAT 57.996 33.333 0.00 0.00 29.47 2.71
4376 4469 8.388656 AGAGACCCTTCTAAATATACCAAACA 57.611 34.615 0.00 0.00 29.47 2.83
4379 4472 8.388656 ACAAGAGACCCTTCTAAATATACCAA 57.611 34.615 0.00 0.00 31.42 3.67
4380 4473 7.989947 ACAAGAGACCCTTCTAAATATACCA 57.010 36.000 0.00 0.00 31.42 3.25
4387 4480 8.204836 GCTCATATAACAAGAGACCCTTCTAAA 58.795 37.037 0.00 0.00 31.42 1.85
4388 4481 7.344612 TGCTCATATAACAAGAGACCCTTCTAA 59.655 37.037 0.00 0.00 31.42 2.10
4389 4482 6.839134 TGCTCATATAACAAGAGACCCTTCTA 59.161 38.462 0.00 0.00 31.42 2.10
4390 4483 5.663106 TGCTCATATAACAAGAGACCCTTCT 59.337 40.000 0.00 0.00 31.42 2.85
4391 4484 5.918608 TGCTCATATAACAAGAGACCCTTC 58.081 41.667 0.00 0.00 31.42 3.46
4392 4485 5.426833 ACTGCTCATATAACAAGAGACCCTT 59.573 40.000 0.00 0.00 34.91 3.95
4393 4486 4.965532 ACTGCTCATATAACAAGAGACCCT 59.034 41.667 0.00 0.00 0.00 4.34
4394 4487 5.163405 TGACTGCTCATATAACAAGAGACCC 60.163 44.000 0.00 0.00 0.00 4.46
4395 4488 5.907207 TGACTGCTCATATAACAAGAGACC 58.093 41.667 0.00 0.00 0.00 3.85
4396 4489 6.020281 CGTTGACTGCTCATATAACAAGAGAC 60.020 42.308 0.00 0.00 0.00 3.36
4397 4490 6.036470 CGTTGACTGCTCATATAACAAGAGA 58.964 40.000 0.00 0.00 0.00 3.10
4398 4491 6.036470 TCGTTGACTGCTCATATAACAAGAG 58.964 40.000 0.00 0.00 0.00 2.85
4399 4492 5.961272 TCGTTGACTGCTCATATAACAAGA 58.039 37.500 0.00 0.00 0.00 3.02
4400 4493 6.292542 CCATCGTTGACTGCTCATATAACAAG 60.293 42.308 0.00 0.00 0.00 3.16
4401 4494 5.523552 CCATCGTTGACTGCTCATATAACAA 59.476 40.000 0.00 0.00 0.00 2.83
4402 4495 5.049828 CCATCGTTGACTGCTCATATAACA 58.950 41.667 0.00 0.00 0.00 2.41
4403 4496 4.084328 GCCATCGTTGACTGCTCATATAAC 60.084 45.833 0.00 0.00 0.00 1.89
4404 4497 4.058124 GCCATCGTTGACTGCTCATATAA 58.942 43.478 0.00 0.00 0.00 0.98
4405 4498 3.554960 GGCCATCGTTGACTGCTCATATA 60.555 47.826 0.00 0.00 0.00 0.86
4406 4499 2.487934 GCCATCGTTGACTGCTCATAT 58.512 47.619 0.00 0.00 0.00 1.78
4412 4505 1.308069 ATGTGGCCATCGTTGACTGC 61.308 55.000 9.72 0.00 0.00 4.40
4443 4536 3.489229 GCCCTCAGAAAATTATTGCGACC 60.489 47.826 0.00 0.00 0.00 4.79
4444 4537 3.128589 TGCCCTCAGAAAATTATTGCGAC 59.871 43.478 0.00 0.00 0.00 5.19
4446 4539 3.119531 TGTGCCCTCAGAAAATTATTGCG 60.120 43.478 0.00 0.00 0.00 4.85
4447 4540 4.454728 TGTGCCCTCAGAAAATTATTGC 57.545 40.909 0.00 0.00 0.00 3.56
4448 4541 7.703621 CACTATTGTGCCCTCAGAAAATTATTG 59.296 37.037 0.00 0.00 37.38 1.90
4450 4543 7.338800 CACTATTGTGCCCTCAGAAAATTAT 57.661 36.000 0.00 0.00 37.38 1.28
4451 4544 6.757897 CACTATTGTGCCCTCAGAAAATTA 57.242 37.500 0.00 0.00 37.38 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.