Multiple sequence alignment - TraesCS5B01G401900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G401900 chr5B 100.000 4564 0 0 1 4564 578593497 578588934 0.000000e+00 8429
1 TraesCS5B01G401900 chr5B 97.923 337 4 3 4228 4564 623807095 623807428 8.510000e-162 580
2 TraesCS5B01G401900 chr5B 98.198 333 4 2 4232 4564 623810832 623811162 8.510000e-162 580
3 TraesCS5B01G401900 chr5B 97.923 337 4 3 4228 4564 627388485 627388818 8.510000e-162 580
4 TraesCS5B01G401900 chr5B 98.198 333 4 2 4232 4564 627392225 627392555 8.510000e-162 580
5 TraesCS5B01G401900 chr5A 91.721 3201 167 39 471 3631 591466453 591463311 0.000000e+00 4353
6 TraesCS5B01G401900 chr5A 79.301 773 118 19 2522 3287 24769005 24769742 1.900000e-138 503
7 TraesCS5B01G401900 chr5A 95.833 288 12 0 1 288 375570541 375570828 2.490000e-127 466
8 TraesCS5B01G401900 chr5A 82.189 539 66 16 2522 3054 618324937 618325451 1.950000e-118 436
9 TraesCS5B01G401900 chr5D 90.589 2242 106 46 287 2497 472277512 472275345 0.000000e+00 2874
10 TraesCS5B01G401900 chr5D 94.677 1240 47 6 2495 3722 472275287 472274055 0.000000e+00 1906
11 TraesCS5B01G401900 chr5D 81.931 1616 190 61 1329 2913 548204470 548206014 0.000000e+00 1273
12 TraesCS5B01G401900 chr5D 93.385 514 34 0 3720 4233 472264343 472263830 0.000000e+00 761
13 TraesCS5B01G401900 chr5D 82.772 772 98 20 2522 3287 250405462 250404720 0.000000e+00 656
14 TraesCS5B01G401900 chr6B 83.663 1518 177 34 1778 3263 55200773 55202251 0.000000e+00 1363
15 TraesCS5B01G401900 chr6B 97.904 334 5 2 4231 4564 188357517 188357186 1.100000e-160 577
16 TraesCS5B01G401900 chr6B 97.297 333 5 3 4232 4564 172309825 172309497 3.080000e-156 562
17 TraesCS5B01G401900 chr6B 80.207 773 111 21 2522 3287 158265864 158266601 4.020000e-150 542
18 TraesCS5B01G401900 chr6B 79.948 773 111 21 2522 3287 136519221 136518486 3.130000e-146 529
19 TraesCS5B01G401900 chr7D 82.015 1618 188 59 1329 2913 500905889 500904342 0.000000e+00 1280
20 TraesCS5B01G401900 chr3B 80.991 1615 205 59 1329 2913 775479975 775481517 0.000000e+00 1188
21 TraesCS5B01G401900 chr3B 82.464 1169 168 18 1778 2933 674485766 674484622 0.000000e+00 989
22 TraesCS5B01G401900 chr3B 98.198 333 4 2 4232 4564 673799798 673799468 8.510000e-162 580
23 TraesCS5B01G401900 chr3B 81.545 466 68 13 1078 1536 674493718 674493264 7.210000e-98 368
24 TraesCS5B01G401900 chr4D 84.013 1251 142 30 1687 2913 418533761 418532545 0.000000e+00 1149
25 TraesCS5B01G401900 chr4D 81.818 275 27 13 1329 1598 418535212 418534956 4.630000e-50 209
26 TraesCS5B01G401900 chr3A 80.559 1610 199 61 1329 2907 647362208 647363734 0.000000e+00 1134
27 TraesCS5B01G401900 chr3A 95.156 289 14 0 1 289 97977528 97977240 1.500000e-124 457
28 TraesCS5B01G401900 chr7A 80.938 1322 160 54 1329 2621 686149183 686147925 0.000000e+00 961
29 TraesCS5B01G401900 chr7B 82.902 772 95 24 2522 3287 23593233 23592493 0.000000e+00 660
30 TraesCS5B01G401900 chr7B 79.948 773 112 20 2522 3287 539992046 539992782 3.130000e-146 529
31 TraesCS5B01G401900 chr7B 95.890 292 12 0 1 292 130514113 130513822 1.490000e-129 473
32 TraesCS5B01G401900 chr6A 98.498 333 5 0 4232 4564 535219724 535220056 5.090000e-164 588
33 TraesCS5B01G401900 chr6A 79.560 773 115 20 2522 3287 570899220 570899956 3.150000e-141 512
34 TraesCS5B01G401900 chr4A 97.297 333 7 2 4232 4564 718552230 718552560 8.570000e-157 564
35 TraesCS5B01G401900 chr1D 79.974 774 112 20 2522 3287 411723830 411724568 8.690000e-147 531
36 TraesCS5B01G401900 chr4B 79.948 773 111 21 2522 3287 419201863 419202598 3.130000e-146 529
37 TraesCS5B01G401900 chr4B 95.502 289 13 0 1 289 271537341 271537629 3.220000e-126 462
38 TraesCS5B01G401900 chr1A 79.716 774 113 24 2522 3287 524698972 524698235 1.880000e-143 520
39 TraesCS5B01G401900 chr1A 94.881 293 14 1 1 292 59919959 59919667 1.500000e-124 457
40 TraesCS5B01G401900 chr2A 96.181 288 11 0 1 288 278444974 278444687 5.340000e-129 472
41 TraesCS5B01G401900 chr2A 95.833 288 12 0 1 288 738738317 738738604 2.490000e-127 466
42 TraesCS5B01G401900 chr2B 95.862 290 11 1 1 289 650153822 650154111 6.910000e-128 468
43 TraesCS5B01G401900 chr1B 95.156 289 14 0 1 289 504503123 504502835 1.500000e-124 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G401900 chr5B 578588934 578593497 4563 True 8429 8429 100.0000 1 4564 1 chr5B.!!$R1 4563
1 TraesCS5B01G401900 chr5B 623807095 623811162 4067 False 580 580 98.0605 4228 4564 2 chr5B.!!$F1 336
2 TraesCS5B01G401900 chr5B 627388485 627392555 4070 False 580 580 98.0605 4228 4564 2 chr5B.!!$F2 336
3 TraesCS5B01G401900 chr5A 591463311 591466453 3142 True 4353 4353 91.7210 471 3631 1 chr5A.!!$R1 3160
4 TraesCS5B01G401900 chr5A 24769005 24769742 737 False 503 503 79.3010 2522 3287 1 chr5A.!!$F1 765
5 TraesCS5B01G401900 chr5A 618324937 618325451 514 False 436 436 82.1890 2522 3054 1 chr5A.!!$F3 532
6 TraesCS5B01G401900 chr5D 472274055 472277512 3457 True 2390 2874 92.6330 287 3722 2 chr5D.!!$R3 3435
7 TraesCS5B01G401900 chr5D 548204470 548206014 1544 False 1273 1273 81.9310 1329 2913 1 chr5D.!!$F1 1584
8 TraesCS5B01G401900 chr5D 472263830 472264343 513 True 761 761 93.3850 3720 4233 1 chr5D.!!$R2 513
9 TraesCS5B01G401900 chr5D 250404720 250405462 742 True 656 656 82.7720 2522 3287 1 chr5D.!!$R1 765
10 TraesCS5B01G401900 chr6B 55200773 55202251 1478 False 1363 1363 83.6630 1778 3263 1 chr6B.!!$F1 1485
11 TraesCS5B01G401900 chr6B 158265864 158266601 737 False 542 542 80.2070 2522 3287 1 chr6B.!!$F2 765
12 TraesCS5B01G401900 chr6B 136518486 136519221 735 True 529 529 79.9480 2522 3287 1 chr6B.!!$R1 765
13 TraesCS5B01G401900 chr7D 500904342 500905889 1547 True 1280 1280 82.0150 1329 2913 1 chr7D.!!$R1 1584
14 TraesCS5B01G401900 chr3B 775479975 775481517 1542 False 1188 1188 80.9910 1329 2913 1 chr3B.!!$F1 1584
15 TraesCS5B01G401900 chr3B 674484622 674485766 1144 True 989 989 82.4640 1778 2933 1 chr3B.!!$R2 1155
16 TraesCS5B01G401900 chr4D 418532545 418535212 2667 True 679 1149 82.9155 1329 2913 2 chr4D.!!$R1 1584
17 TraesCS5B01G401900 chr3A 647362208 647363734 1526 False 1134 1134 80.5590 1329 2907 1 chr3A.!!$F1 1578
18 TraesCS5B01G401900 chr7A 686147925 686149183 1258 True 961 961 80.9380 1329 2621 1 chr7A.!!$R1 1292
19 TraesCS5B01G401900 chr7B 23592493 23593233 740 True 660 660 82.9020 2522 3287 1 chr7B.!!$R1 765
20 TraesCS5B01G401900 chr7B 539992046 539992782 736 False 529 529 79.9480 2522 3287 1 chr7B.!!$F1 765
21 TraesCS5B01G401900 chr6A 570899220 570899956 736 False 512 512 79.5600 2522 3287 1 chr6A.!!$F2 765
22 TraesCS5B01G401900 chr1D 411723830 411724568 738 False 531 531 79.9740 2522 3287 1 chr1D.!!$F1 765
23 TraesCS5B01G401900 chr4B 419201863 419202598 735 False 529 529 79.9480 2522 3287 1 chr4B.!!$F2 765
24 TraesCS5B01G401900 chr1A 524698235 524698972 737 True 520 520 79.7160 2522 3287 1 chr1A.!!$R2 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.107081 AACAACGTCGTTCATGGGGA 59.893 50.0 7.86 0.0 0.00 4.81 F
1032 1062 0.031449 GCTAGCTAACTCTGCGAGGG 59.969 60.0 7.70 0.0 34.51 4.30 F
1602 1665 0.114168 ATCCAGATCCTCTCCCGGAG 59.886 60.0 8.30 8.3 41.51 4.63 F
2954 4242 0.984995 AGACCTACAACCAGAAGCCC 59.015 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1622 0.041090 GGATTTTGCAAGGAGGGGGA 59.959 55.000 0.00 0.0 0.0 4.81 R
2245 3447 2.874701 GGCATGCTGACAGACGAAATAT 59.125 45.455 18.92 0.0 0.0 1.28 R
3238 4553 0.610232 CAAGGCCAAGAACAGAGGGG 60.610 60.000 5.01 0.0 0.0 4.79 R
4086 5423 0.599060 TCTTGTCGCACCATCACGTA 59.401 50.000 0.00 0.0 0.0 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.434555 TCATTTGGCGGTTACACTCG 58.565 50.000 0.00 0.00 0.00 4.18
26 27 4.424566 GGTTACACTCGCGCGGGA 62.425 66.667 39.76 25.06 0.00 5.14
27 28 2.879462 GTTACACTCGCGCGGGAG 60.879 66.667 40.95 40.95 39.97 4.30
28 29 4.124351 TTACACTCGCGCGGGAGG 62.124 66.667 43.26 34.95 38.39 4.30
48 49 2.457598 GGAAAAATCCTCCCAACTCCC 58.542 52.381 0.00 0.00 0.00 4.30
49 50 2.092323 GAAAAATCCTCCCAACTCCCG 58.908 52.381 0.00 0.00 0.00 5.14
50 51 0.323451 AAAATCCTCCCAACTCCCGC 60.323 55.000 0.00 0.00 0.00 6.13
51 52 2.536997 AAATCCTCCCAACTCCCGCG 62.537 60.000 0.00 0.00 0.00 6.46
88 89 4.208686 CTGCTAGTCGCCCCCGTC 62.209 72.222 0.00 0.00 38.05 4.79
132 133 3.375676 GCGCGCAACAACAACGTC 61.376 61.111 29.10 0.00 0.00 4.34
133 134 3.076727 CGCGCAACAACAACGTCG 61.077 61.111 8.75 0.00 0.00 5.12
134 135 2.022207 GCGCAACAACAACGTCGT 59.978 55.556 0.30 0.00 0.00 4.34
135 136 1.581657 GCGCAACAACAACGTCGTT 60.582 52.632 4.40 4.40 0.00 3.85
136 137 1.517718 GCGCAACAACAACGTCGTTC 61.518 55.000 7.86 0.00 0.00 3.95
137 138 0.247340 CGCAACAACAACGTCGTTCA 60.247 50.000 7.86 0.00 0.00 3.18
138 139 1.593551 CGCAACAACAACGTCGTTCAT 60.594 47.619 7.86 0.00 0.00 2.57
139 140 1.772966 GCAACAACAACGTCGTTCATG 59.227 47.619 7.86 12.24 0.00 3.07
140 141 2.371432 CAACAACAACGTCGTTCATGG 58.629 47.619 18.65 7.79 0.00 3.66
141 142 0.941542 ACAACAACGTCGTTCATGGG 59.058 50.000 18.65 7.49 0.00 4.00
142 143 0.237235 CAACAACGTCGTTCATGGGG 59.763 55.000 7.86 0.00 0.00 4.96
143 144 0.107081 AACAACGTCGTTCATGGGGA 59.893 50.000 7.86 0.00 0.00 4.81
144 145 0.107081 ACAACGTCGTTCATGGGGAA 59.893 50.000 7.86 0.00 0.00 3.97
145 146 1.271163 ACAACGTCGTTCATGGGGAAT 60.271 47.619 7.86 0.00 37.93 3.01
146 147 2.027929 ACAACGTCGTTCATGGGGAATA 60.028 45.455 7.86 0.00 37.93 1.75
147 148 3.202906 CAACGTCGTTCATGGGGAATAT 58.797 45.455 7.86 0.00 37.93 1.28
148 149 3.553828 ACGTCGTTCATGGGGAATATT 57.446 42.857 0.00 0.00 37.93 1.28
149 150 3.463944 ACGTCGTTCATGGGGAATATTC 58.536 45.455 6.93 6.93 37.93 1.75
150 151 2.806244 CGTCGTTCATGGGGAATATTCC 59.194 50.000 24.14 24.14 46.82 3.01
164 165 4.941873 GGAATATTCCGCTATAAGGGTTGG 59.058 45.833 18.61 0.00 37.65 3.77
165 166 2.951229 ATTCCGCTATAAGGGTTGGG 57.049 50.000 0.00 0.00 0.00 4.12
166 167 1.587066 TTCCGCTATAAGGGTTGGGT 58.413 50.000 0.00 0.00 0.00 4.51
167 168 1.587066 TCCGCTATAAGGGTTGGGTT 58.413 50.000 0.00 0.00 0.00 4.11
168 169 1.917568 TCCGCTATAAGGGTTGGGTTT 59.082 47.619 0.00 0.00 0.00 3.27
169 170 2.021457 CCGCTATAAGGGTTGGGTTTG 58.979 52.381 0.00 0.00 0.00 2.93
170 171 2.356330 CCGCTATAAGGGTTGGGTTTGA 60.356 50.000 0.00 0.00 0.00 2.69
171 172 2.943033 CGCTATAAGGGTTGGGTTTGAG 59.057 50.000 0.00 0.00 0.00 3.02
172 173 3.288092 GCTATAAGGGTTGGGTTTGAGG 58.712 50.000 0.00 0.00 0.00 3.86
173 174 2.919772 ATAAGGGTTGGGTTTGAGGG 57.080 50.000 0.00 0.00 0.00 4.30
174 175 1.536644 TAAGGGTTGGGTTTGAGGGT 58.463 50.000 0.00 0.00 0.00 4.34
175 176 0.639943 AAGGGTTGGGTTTGAGGGTT 59.360 50.000 0.00 0.00 0.00 4.11
176 177 0.187606 AGGGTTGGGTTTGAGGGTTC 59.812 55.000 0.00 0.00 0.00 3.62
177 178 0.187606 GGGTTGGGTTTGAGGGTTCT 59.812 55.000 0.00 0.00 0.00 3.01
178 179 1.426215 GGGTTGGGTTTGAGGGTTCTA 59.574 52.381 0.00 0.00 0.00 2.10
179 180 2.158430 GGGTTGGGTTTGAGGGTTCTAA 60.158 50.000 0.00 0.00 0.00 2.10
180 181 3.501568 GGGTTGGGTTTGAGGGTTCTAAT 60.502 47.826 0.00 0.00 0.00 1.73
181 182 3.762288 GGTTGGGTTTGAGGGTTCTAATC 59.238 47.826 0.00 0.00 0.00 1.75
182 183 4.508584 GGTTGGGTTTGAGGGTTCTAATCT 60.509 45.833 0.00 0.00 0.00 2.40
183 184 5.077564 GTTGGGTTTGAGGGTTCTAATCTT 58.922 41.667 0.00 0.00 0.00 2.40
184 185 5.333566 TGGGTTTGAGGGTTCTAATCTTT 57.666 39.130 0.00 0.00 0.00 2.52
185 186 5.076873 TGGGTTTGAGGGTTCTAATCTTTG 58.923 41.667 0.00 0.00 0.00 2.77
186 187 5.077564 GGGTTTGAGGGTTCTAATCTTTGT 58.922 41.667 0.00 0.00 0.00 2.83
187 188 5.183331 GGGTTTGAGGGTTCTAATCTTTGTC 59.817 44.000 0.00 0.00 0.00 3.18
188 189 6.004574 GGTTTGAGGGTTCTAATCTTTGTCT 58.995 40.000 0.00 0.00 0.00 3.41
189 190 6.149640 GGTTTGAGGGTTCTAATCTTTGTCTC 59.850 42.308 0.00 0.00 0.00 3.36
190 191 6.688073 TTGAGGGTTCTAATCTTTGTCTCT 57.312 37.500 0.00 0.00 0.00 3.10
191 192 6.042638 TGAGGGTTCTAATCTTTGTCTCTG 57.957 41.667 0.00 0.00 0.00 3.35
192 193 5.544176 TGAGGGTTCTAATCTTTGTCTCTGT 59.456 40.000 0.00 0.00 0.00 3.41
193 194 6.043243 TGAGGGTTCTAATCTTTGTCTCTGTT 59.957 38.462 0.00 0.00 0.00 3.16
194 195 6.842676 AGGGTTCTAATCTTTGTCTCTGTTT 58.157 36.000 0.00 0.00 0.00 2.83
195 196 7.290813 AGGGTTCTAATCTTTGTCTCTGTTTT 58.709 34.615 0.00 0.00 0.00 2.43
196 197 7.780271 AGGGTTCTAATCTTTGTCTCTGTTTTT 59.220 33.333 0.00 0.00 0.00 1.94
197 198 8.076781 GGGTTCTAATCTTTGTCTCTGTTTTTC 58.923 37.037 0.00 0.00 0.00 2.29
198 199 8.621286 GGTTCTAATCTTTGTCTCTGTTTTTCA 58.379 33.333 0.00 0.00 0.00 2.69
201 202 8.621286 TCTAATCTTTGTCTCTGTTTTTCAACC 58.379 33.333 0.00 0.00 31.02 3.77
202 203 5.576447 TCTTTGTCTCTGTTTTTCAACCC 57.424 39.130 0.00 0.00 31.02 4.11
203 204 4.095782 TCTTTGTCTCTGTTTTTCAACCCG 59.904 41.667 0.00 0.00 31.02 5.28
204 205 2.993937 TGTCTCTGTTTTTCAACCCGT 58.006 42.857 0.00 0.00 31.02 5.28
205 206 4.139859 TGTCTCTGTTTTTCAACCCGTA 57.860 40.909 0.00 0.00 31.02 4.02
206 207 4.515361 TGTCTCTGTTTTTCAACCCGTAA 58.485 39.130 0.00 0.00 31.02 3.18
207 208 4.942483 TGTCTCTGTTTTTCAACCCGTAAA 59.058 37.500 0.00 0.00 31.02 2.01
208 209 5.415077 TGTCTCTGTTTTTCAACCCGTAAAA 59.585 36.000 0.00 0.00 31.02 1.52
209 210 6.072064 TGTCTCTGTTTTTCAACCCGTAAAAA 60.072 34.615 0.00 0.00 33.41 1.94
210 211 6.976349 GTCTCTGTTTTTCAACCCGTAAAAAT 59.024 34.615 0.00 0.00 37.04 1.82
211 212 6.975772 TCTCTGTTTTTCAACCCGTAAAAATG 59.024 34.615 0.00 0.00 37.04 2.32
212 213 5.520649 TCTGTTTTTCAACCCGTAAAAATGC 59.479 36.000 0.00 0.00 37.04 3.56
213 214 5.175859 TGTTTTTCAACCCGTAAAAATGCA 58.824 33.333 0.00 0.00 37.04 3.96
214 215 5.063564 TGTTTTTCAACCCGTAAAAATGCAC 59.936 36.000 0.00 0.00 37.04 4.57
215 216 4.386867 TTTCAACCCGTAAAAATGCACA 57.613 36.364 0.00 0.00 0.00 4.57
216 217 4.386867 TTCAACCCGTAAAAATGCACAA 57.613 36.364 0.00 0.00 0.00 3.33
217 218 4.386867 TCAACCCGTAAAAATGCACAAA 57.613 36.364 0.00 0.00 0.00 2.83
218 219 4.755411 TCAACCCGTAAAAATGCACAAAA 58.245 34.783 0.00 0.00 0.00 2.44
219 220 5.175859 TCAACCCGTAAAAATGCACAAAAA 58.824 33.333 0.00 0.00 0.00 1.94
245 246 9.679661 AAATCATTTTTGAACCCTTAAAACACT 57.320 25.926 0.00 0.00 0.00 3.55
247 248 9.981114 ATCATTTTTGAACCCTTAAAACACTAG 57.019 29.630 0.00 0.00 0.00 2.57
248 249 8.973182 TCATTTTTGAACCCTTAAAACACTAGT 58.027 29.630 0.00 0.00 0.00 2.57
249 250 9.030301 CATTTTTGAACCCTTAAAACACTAGTG 57.970 33.333 21.44 21.44 0.00 2.74
250 251 7.941431 TTTTGAACCCTTAAAACACTAGTGA 57.059 32.000 29.30 3.66 0.00 3.41
251 252 7.562454 TTTGAACCCTTAAAACACTAGTGAG 57.438 36.000 29.30 14.88 0.00 3.51
252 253 5.617252 TGAACCCTTAAAACACTAGTGAGG 58.383 41.667 29.30 22.29 0.00 3.86
253 254 4.635699 ACCCTTAAAACACTAGTGAGGG 57.364 45.455 31.22 31.22 39.78 4.30
254 255 3.978672 ACCCTTAAAACACTAGTGAGGGT 59.021 43.478 32.23 32.23 42.98 4.34
261 262 1.978580 ACACTAGTGAGGGTTTGAGGG 59.021 52.381 29.30 0.00 34.88 4.30
262 263 1.978580 CACTAGTGAGGGTTTGAGGGT 59.021 52.381 18.45 0.00 0.00 4.34
263 264 2.372172 CACTAGTGAGGGTTTGAGGGTT 59.628 50.000 18.45 0.00 0.00 4.11
264 265 3.053826 ACTAGTGAGGGTTTGAGGGTTT 58.946 45.455 0.00 0.00 0.00 3.27
265 266 2.364972 AGTGAGGGTTTGAGGGTTTG 57.635 50.000 0.00 0.00 0.00 2.93
266 267 1.850345 AGTGAGGGTTTGAGGGTTTGA 59.150 47.619 0.00 0.00 0.00 2.69
267 268 2.158608 AGTGAGGGTTTGAGGGTTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
268 269 1.144913 TGAGGGTTTGAGGGTTTGAGG 59.855 52.381 0.00 0.00 0.00 3.86
269 270 1.423921 GAGGGTTTGAGGGTTTGAGGA 59.576 52.381 0.00 0.00 0.00 3.71
270 271 2.041755 GAGGGTTTGAGGGTTTGAGGAT 59.958 50.000 0.00 0.00 0.00 3.24
271 272 2.450886 AGGGTTTGAGGGTTTGAGGATT 59.549 45.455 0.00 0.00 0.00 3.01
272 273 2.826128 GGGTTTGAGGGTTTGAGGATTC 59.174 50.000 0.00 0.00 0.00 2.52
273 274 3.500471 GGGTTTGAGGGTTTGAGGATTCT 60.500 47.826 0.00 0.00 0.00 2.40
274 275 4.263771 GGGTTTGAGGGTTTGAGGATTCTA 60.264 45.833 0.00 0.00 0.00 2.10
275 276 4.700692 GGTTTGAGGGTTTGAGGATTCTAC 59.299 45.833 0.00 0.00 0.00 2.59
276 277 5.515008 GGTTTGAGGGTTTGAGGATTCTACT 60.515 44.000 0.00 0.00 0.00 2.57
277 278 6.296259 GGTTTGAGGGTTTGAGGATTCTACTA 60.296 42.308 0.00 0.00 0.00 1.82
278 279 6.546428 TTGAGGGTTTGAGGATTCTACTAG 57.454 41.667 0.00 0.00 0.00 2.57
279 280 5.590818 TGAGGGTTTGAGGATTCTACTAGT 58.409 41.667 0.00 0.00 0.00 2.57
280 281 6.738635 TGAGGGTTTGAGGATTCTACTAGTA 58.261 40.000 1.89 1.89 0.00 1.82
281 282 7.186972 TGAGGGTTTGAGGATTCTACTAGTAA 58.813 38.462 3.76 0.00 0.00 2.24
282 283 7.844779 TGAGGGTTTGAGGATTCTACTAGTAAT 59.155 37.037 3.76 0.00 0.00 1.89
283 284 8.024145 AGGGTTTGAGGATTCTACTAGTAATG 57.976 38.462 3.76 0.00 0.00 1.90
284 285 6.706716 GGGTTTGAGGATTCTACTAGTAATGC 59.293 42.308 3.76 3.06 0.00 3.56
285 286 7.419172 GGGTTTGAGGATTCTACTAGTAATGCT 60.419 40.741 11.05 11.05 36.59 3.79
289 290 8.624367 TGAGGATTCTACTAGTAATGCTCTAC 57.376 38.462 26.87 12.43 45.52 2.59
299 300 6.874134 ACTAGTAATGCTCTACACAAACCAAG 59.126 38.462 0.00 0.00 0.00 3.61
304 305 2.360801 GCTCTACACAAACCAAGCCAAA 59.639 45.455 0.00 0.00 0.00 3.28
324 325 0.460284 CAAACCTGGATCGACCGAGG 60.460 60.000 6.24 6.24 42.61 4.63
326 327 3.917760 CCTGGATCGACCGAGGCC 61.918 72.222 0.00 0.00 42.61 5.19
337 338 3.866539 CGAGGCCCGGGTACTATT 58.133 61.111 24.63 0.87 33.91 1.73
338 339 1.664306 CGAGGCCCGGGTACTATTC 59.336 63.158 24.63 9.85 33.91 1.75
339 340 1.664306 GAGGCCCGGGTACTATTCG 59.336 63.158 24.63 0.00 0.00 3.34
340 341 0.825010 GAGGCCCGGGTACTATTCGA 60.825 60.000 24.63 0.00 0.00 3.71
341 342 1.111715 AGGCCCGGGTACTATTCGAC 61.112 60.000 24.63 0.00 0.00 4.20
346 347 1.262683 CCGGGTACTATTCGACTCGAC 59.737 57.143 0.00 0.00 42.24 4.20
347 348 2.208431 CGGGTACTATTCGACTCGACT 58.792 52.381 0.00 0.00 42.24 4.18
352 353 2.015587 ACTATTCGACTCGACTCACCC 58.984 52.381 0.00 0.00 34.89 4.61
365 366 3.370527 CGACTCACCCAACCATTATTCCT 60.371 47.826 0.00 0.00 0.00 3.36
368 369 4.044065 ACTCACCCAACCATTATTCCTTCA 59.956 41.667 0.00 0.00 0.00 3.02
369 370 5.203528 CTCACCCAACCATTATTCCTTCAT 58.796 41.667 0.00 0.00 0.00 2.57
370 371 5.200483 TCACCCAACCATTATTCCTTCATC 58.800 41.667 0.00 0.00 0.00 2.92
371 372 4.036734 CACCCAACCATTATTCCTTCATCG 59.963 45.833 0.00 0.00 0.00 3.84
373 374 3.004734 CCAACCATTATTCCTTCATCGCC 59.995 47.826 0.00 0.00 0.00 5.54
374 375 3.576078 ACCATTATTCCTTCATCGCCA 57.424 42.857 0.00 0.00 0.00 5.69
375 376 4.104383 ACCATTATTCCTTCATCGCCAT 57.896 40.909 0.00 0.00 0.00 4.40
377 378 5.630121 ACCATTATTCCTTCATCGCCATAA 58.370 37.500 0.00 0.00 0.00 1.90
434 441 2.808543 CGGATTAATTAGTGGAGCCAGC 59.191 50.000 0.00 0.00 0.00 4.85
731 749 6.058553 TCCCATGATTAGGATGATGCTTAG 57.941 41.667 0.00 0.00 0.00 2.18
732 750 5.045359 TCCCATGATTAGGATGATGCTTAGG 60.045 44.000 0.00 0.00 0.00 2.69
741 759 0.750850 TGATGCTTAGGGCGAGGTAC 59.249 55.000 0.00 0.00 45.43 3.34
743 761 2.236766 GATGCTTAGGGCGAGGTACTA 58.763 52.381 0.00 0.00 45.43 1.82
757 775 5.055812 CGAGGTACTAGTACAAGTAGAGGG 58.944 50.000 29.38 8.25 41.55 4.30
758 776 5.163364 CGAGGTACTAGTACAAGTAGAGGGA 60.163 48.000 29.38 0.00 41.55 4.20
759 777 6.251255 AGGTACTAGTACAAGTAGAGGGAG 57.749 45.833 29.38 0.00 36.02 4.30
760 778 5.132480 AGGTACTAGTACAAGTAGAGGGAGG 59.868 48.000 29.38 0.00 36.02 4.30
761 779 5.131809 GGTACTAGTACAAGTAGAGGGAGGA 59.868 48.000 29.38 0.00 37.78 3.71
762 780 5.114764 ACTAGTACAAGTAGAGGGAGGAC 57.885 47.826 0.00 0.00 0.00 3.85
763 781 4.789702 ACTAGTACAAGTAGAGGGAGGACT 59.210 45.833 0.00 0.00 0.00 3.85
765 783 1.562783 ACAAGTAGAGGGAGGACTGC 58.437 55.000 0.00 0.00 0.00 4.40
767 785 2.183679 CAAGTAGAGGGAGGACTGCTT 58.816 52.381 0.00 0.00 39.01 3.91
769 787 0.827368 GTAGAGGGAGGACTGCTTGG 59.173 60.000 0.00 0.00 0.00 3.61
810 835 4.128388 GGAATTGTTGGCGGCCGG 62.128 66.667 29.38 8.95 0.00 6.13
861 886 0.394192 CCTGGCATTATCCGCTGAGA 59.606 55.000 0.00 0.00 0.00 3.27
876 901 5.828328 TCCGCTGAGAAGTCTGAGATAATTA 59.172 40.000 0.00 0.00 27.98 1.40
883 908 7.227711 TGAGAAGTCTGAGATAATTAGAGGTCG 59.772 40.741 0.00 0.00 0.00 4.79
919 949 2.341846 TTGGGTTGATCGATAAGGGC 57.658 50.000 0.00 0.00 0.00 5.19
934 964 2.206576 AGGGCAGGTAAAGCTCTTTG 57.793 50.000 5.21 0.00 40.69 2.77
935 965 1.705186 AGGGCAGGTAAAGCTCTTTGA 59.295 47.619 5.21 0.00 40.69 2.69
993 1023 1.179152 TATCCGTCCGTCAAGCTTCA 58.821 50.000 0.00 0.00 0.00 3.02
1032 1062 0.031449 GCTAGCTAACTCTGCGAGGG 59.969 60.000 7.70 0.00 34.51 4.30
1314 1351 1.450312 GACGCAGGGAATGGTGAGG 60.450 63.158 0.00 0.00 0.00 3.86
1383 1430 4.023707 CGACCAGAGCACTGAATTTTCTTT 60.024 41.667 13.19 0.00 46.03 2.52
1384 1431 5.506317 CGACCAGAGCACTGAATTTTCTTTT 60.506 40.000 13.19 0.00 46.03 2.27
1385 1432 5.836347 ACCAGAGCACTGAATTTTCTTTTC 58.164 37.500 13.19 0.00 46.03 2.29
1386 1433 5.595952 ACCAGAGCACTGAATTTTCTTTTCT 59.404 36.000 13.19 0.00 46.03 2.52
1387 1434 6.097412 ACCAGAGCACTGAATTTTCTTTTCTT 59.903 34.615 13.19 0.00 46.03 2.52
1388 1435 6.420008 CCAGAGCACTGAATTTTCTTTTCTTG 59.580 38.462 13.19 0.00 46.03 3.02
1389 1436 6.976925 CAGAGCACTGAATTTTCTTTTCTTGT 59.023 34.615 5.03 0.00 46.03 3.16
1551 1598 0.741221 CAGTAAGTTCCAGGCTCGCC 60.741 60.000 0.00 0.00 0.00 5.54
1562 1617 2.202743 GCTCGCCGTGCTCACATA 60.203 61.111 3.57 0.00 0.00 2.29
1564 1619 1.552348 GCTCGCCGTGCTCACATATC 61.552 60.000 3.57 0.00 0.00 1.63
1565 1620 0.941463 CTCGCCGTGCTCACATATCC 60.941 60.000 0.69 0.00 0.00 2.59
1566 1621 1.227234 CGCCGTGCTCACATATCCA 60.227 57.895 0.69 0.00 0.00 3.41
1567 1622 0.601046 CGCCGTGCTCACATATCCAT 60.601 55.000 0.69 0.00 0.00 3.41
1568 1623 1.151668 GCCGTGCTCACATATCCATC 58.848 55.000 0.69 0.00 0.00 3.51
1602 1665 0.114168 ATCCAGATCCTCTCCCGGAG 59.886 60.000 8.30 8.30 41.51 4.63
2000 3199 2.036475 CGCCTACTGATCCAGCACTATT 59.964 50.000 0.00 0.00 34.37 1.73
2007 3206 5.503927 ACTGATCCAGCACTATTGTTCAAT 58.496 37.500 3.55 3.55 34.37 2.57
2042 3241 1.205064 CGTTCCTGCTTTGCTGACG 59.795 57.895 0.00 0.00 0.00 4.35
2054 3254 2.148916 TGCTGACGAAACTGACGATT 57.851 45.000 0.00 0.00 34.70 3.34
2189 3391 2.876858 AGGGTCAGAGGGGAGGGT 60.877 66.667 0.00 0.00 0.00 4.34
2245 3447 4.248058 CTGATGTGCATTCACTCACTGTA 58.752 43.478 0.00 0.00 43.49 2.74
2484 3693 4.659111 TCACTCGTGTTTCTTGACCTAA 57.341 40.909 0.00 0.00 0.00 2.69
2497 3706 8.456471 GTTTCTTGACCTAACACTTAACAAGTT 58.544 33.333 0.00 0.00 40.46 2.66
2954 4242 0.984995 AGACCTACAACCAGAAGCCC 59.015 55.000 0.00 0.00 0.00 5.19
2993 4281 5.106555 CCAGCACAAATTCTACAAGGTACTG 60.107 44.000 0.00 0.00 40.86 2.74
3060 4367 6.871844 TCAGAGATTTCTTCATGTCCTAGTG 58.128 40.000 0.00 0.00 0.00 2.74
3158 4465 1.419374 GGTTCAGCTACATATCGCGG 58.581 55.000 6.13 0.00 0.00 6.46
3263 4578 1.360393 TGTTCTTGGCCTTGGGACCT 61.360 55.000 3.32 0.00 0.00 3.85
3268 4583 1.943730 TTGGCCTTGGGACCTGTTGT 61.944 55.000 3.32 0.00 0.00 3.32
3323 4638 4.314440 GTCGTCTGGGTGCAGGCA 62.314 66.667 0.00 0.00 0.00 4.75
3332 4647 2.282040 GTGCAGGCACAGAAGGCT 60.282 61.111 18.84 0.00 45.53 4.58
3419 4734 2.033151 GCAAATACCGACGCTCATAACC 60.033 50.000 0.00 0.00 0.00 2.85
3471 4786 4.518970 ACTGACTTTGAGAGTGAGAGAGAC 59.481 45.833 0.00 0.00 41.57 3.36
3484 4799 7.661437 AGAGTGAGAGAGACAAGCTGTATATAG 59.339 40.741 0.00 0.00 0.00 1.31
3496 4814 5.682943 GCTGTATATAGCGGGAGATAGAG 57.317 47.826 5.66 0.00 32.39 2.43
3552 4870 7.417612 GGTGTATTGATCGTGCAAATAATCTT 58.582 34.615 0.00 0.00 0.00 2.40
3644 4976 4.386652 CCTTTTTCAGAACATGGAAATGCG 59.613 41.667 0.00 0.00 36.25 4.73
3653 4985 1.035139 ATGGAAATGCGAGATTGCCC 58.965 50.000 2.87 0.00 0.00 5.36
3666 4998 1.070601 GATTGCCCAAGTTGCCAAAGT 59.929 47.619 10.09 0.00 0.00 2.66
3699 5036 5.863397 ACATAATCTTGTGCACCGAAAATTG 59.137 36.000 15.69 7.52 0.00 2.32
3748 5085 3.017442 GGAAGAGGAGGCCACAAAATAC 58.983 50.000 5.01 0.00 0.00 1.89
3757 5094 1.401018 GCCACAAAATACCACTCGTGC 60.401 52.381 0.00 0.00 0.00 5.34
3760 5097 2.548057 CACAAAATACCACTCGTGCTGT 59.452 45.455 0.00 0.00 0.00 4.40
3781 5118 4.142138 TGTGTGTAAACCCAAATTGGTCAC 60.142 41.667 11.52 11.48 37.76 3.67
3792 5129 4.152402 CCAAATTGGTCACTGTAAGAGTCG 59.848 45.833 3.34 0.00 32.39 4.18
3794 5131 3.917329 TTGGTCACTGTAAGAGTCGAG 57.083 47.619 0.00 0.00 37.43 4.04
3856 5193 2.378634 CCCCATCCTCTGGTCCCAC 61.379 68.421 0.00 0.00 44.30 4.61
3858 5195 1.990060 CCATCCTCTGGTCCCACGT 60.990 63.158 0.00 0.00 40.49 4.49
3861 5198 0.325671 ATCCTCTGGTCCCACGTGAT 60.326 55.000 19.30 0.00 0.00 3.06
3877 5214 6.538742 CCCACGTGATCTTTCTTGTATATTGT 59.461 38.462 19.30 0.00 0.00 2.71
3960 5297 6.252233 TGGGATCCTCAAACACAAAATCATA 58.748 36.000 12.58 0.00 0.00 2.15
3985 5322 2.524306 TCTTGCAAATTCAATCCGGGT 58.476 42.857 0.00 0.00 0.00 5.28
3986 5323 2.491693 TCTTGCAAATTCAATCCGGGTC 59.508 45.455 0.00 0.00 0.00 4.46
3996 5333 2.300152 TCAATCCGGGTCTATGATCAGC 59.700 50.000 0.00 0.00 0.00 4.26
4022 5359 5.458779 TGAATGCACGACGAGATACATTTAG 59.541 40.000 0.00 0.00 0.00 1.85
4029 5366 7.903431 GCACGACGAGATACATTTAGAATTTTT 59.097 33.333 0.00 0.00 0.00 1.94
4061 5398 7.370383 TCTACAAGCAGGAAACAATCATTTTC 58.630 34.615 0.00 0.00 33.00 2.29
4062 5399 4.984161 ACAAGCAGGAAACAATCATTTTCG 59.016 37.500 0.00 0.00 34.34 3.46
4065 5402 3.674753 GCAGGAAACAATCATTTTCGGTG 59.325 43.478 0.00 0.00 34.34 4.94
4086 5423 2.198827 TGCTCAAACGGTGATCCATT 57.801 45.000 0.00 0.00 35.07 3.16
4089 5426 2.030457 GCTCAAACGGTGATCCATTACG 59.970 50.000 0.00 0.00 35.07 3.18
4117 5454 1.066908 GCGACAAGAGAGAGATCCAGG 59.933 57.143 0.00 0.00 0.00 4.45
4124 5461 5.309282 ACAAGAGAGAGATCCAGGTTTTTCT 59.691 40.000 0.00 0.00 0.00 2.52
4150 5487 7.685481 TCAAGTACTTGGTTGATAAAGATGGA 58.315 34.615 30.35 7.02 40.78 3.41
4167 5504 5.874093 AGATGGACATCATAAGGGATTGTC 58.126 41.667 14.16 0.00 40.22 3.18
4170 5507 4.103153 TGGACATCATAAGGGATTGTCCTC 59.897 45.833 18.21 0.00 41.24 3.71
4171 5508 4.505742 GGACATCATAAGGGATTGTCCTCC 60.506 50.000 12.03 0.00 39.60 4.30
4174 5511 3.318313 TCATAAGGGATTGTCCTCCTCC 58.682 50.000 0.00 0.00 36.57 4.30
4354 9428 9.109533 CACTACAAACGAATAACCAAATACAAC 57.890 33.333 0.00 0.00 0.00 3.32
4366 9440 5.219633 ACCAAATACAACGAAATTGCAGAC 58.780 37.500 0.00 0.00 42.62 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.434555 CGAGTGTAACCGCCAAATGA 58.565 50.000 0.00 0.00 37.80 2.57
1 2 0.179200 GCGAGTGTAACCGCCAAATG 60.179 55.000 0.00 0.00 46.07 2.32
2 3 2.168054 GCGAGTGTAACCGCCAAAT 58.832 52.632 0.00 0.00 46.07 2.32
3 4 3.645286 GCGAGTGTAACCGCCAAA 58.355 55.556 0.00 0.00 46.07 3.28
9 10 4.424566 TCCCGCGCGAGTGTAACC 62.425 66.667 34.63 0.00 40.80 2.85
10 11 2.879462 CTCCCGCGCGAGTGTAAC 60.879 66.667 34.63 0.00 40.80 2.50
11 12 4.124351 CCTCCCGCGCGAGTGTAA 62.124 66.667 34.63 8.45 40.80 2.41
16 17 4.752879 TTTTCCCTCCCGCGCGAG 62.753 66.667 34.63 20.97 0.00 5.03
17 18 3.615509 ATTTTTCCCTCCCGCGCGA 62.616 57.895 34.63 11.99 0.00 5.87
18 19 3.108357 GATTTTTCCCTCCCGCGCG 62.108 63.158 25.67 25.67 0.00 6.86
19 20 2.771639 GGATTTTTCCCTCCCGCGC 61.772 63.158 0.00 0.00 0.00 6.86
20 21 1.077716 AGGATTTTTCCCTCCCGCG 60.078 57.895 0.00 0.00 31.49 6.46
21 22 2.795165 GAGGATTTTTCCCTCCCGC 58.205 57.895 0.00 0.00 43.37 6.13
28 29 2.457598 GGGAGTTGGGAGGATTTTTCC 58.542 52.381 0.00 0.00 0.00 3.13
29 30 2.092323 CGGGAGTTGGGAGGATTTTTC 58.908 52.381 0.00 0.00 0.00 2.29
30 31 1.891011 GCGGGAGTTGGGAGGATTTTT 60.891 52.381 0.00 0.00 0.00 1.94
31 32 0.323451 GCGGGAGTTGGGAGGATTTT 60.323 55.000 0.00 0.00 0.00 1.82
32 33 1.303282 GCGGGAGTTGGGAGGATTT 59.697 57.895 0.00 0.00 0.00 2.17
33 34 2.998949 GCGGGAGTTGGGAGGATT 59.001 61.111 0.00 0.00 0.00 3.01
34 35 3.470888 CGCGGGAGTTGGGAGGAT 61.471 66.667 0.00 0.00 0.00 3.24
115 116 3.375676 GACGTTGTTGTTGCGCGC 61.376 61.111 27.26 27.26 0.00 6.86
116 117 3.076727 CGACGTTGTTGTTGCGCG 61.077 61.111 0.00 0.00 0.00 6.86
117 118 1.517718 GAACGACGTTGTTGTTGCGC 61.518 55.000 25.62 0.00 39.88 6.09
118 119 0.247340 TGAACGACGTTGTTGTTGCG 60.247 50.000 25.62 6.69 39.88 4.85
119 120 1.772966 CATGAACGACGTTGTTGTTGC 59.227 47.619 25.62 11.54 39.88 4.17
120 121 2.371432 CCATGAACGACGTTGTTGTTG 58.629 47.619 25.62 19.70 39.88 3.33
121 122 1.332375 CCCATGAACGACGTTGTTGTT 59.668 47.619 25.62 10.71 42.15 2.83
122 123 0.941542 CCCATGAACGACGTTGTTGT 59.058 50.000 25.62 11.19 30.75 3.32
123 124 0.237235 CCCCATGAACGACGTTGTTG 59.763 55.000 25.62 14.28 30.75 3.33
124 125 0.107081 TCCCCATGAACGACGTTGTT 59.893 50.000 21.10 21.10 34.02 2.83
125 126 0.107081 TTCCCCATGAACGACGTTGT 59.893 50.000 19.60 1.48 0.00 3.32
126 127 1.448985 ATTCCCCATGAACGACGTTG 58.551 50.000 19.60 4.40 35.31 4.10
127 128 3.553828 ATATTCCCCATGAACGACGTT 57.446 42.857 14.11 14.11 35.31 3.99
128 129 3.463944 GAATATTCCCCATGAACGACGT 58.536 45.455 3.92 0.00 35.31 4.34
129 130 2.806244 GGAATATTCCCCATGAACGACG 59.194 50.000 22.09 0.00 41.62 5.12
130 131 2.806244 CGGAATATTCCCCATGAACGAC 59.194 50.000 25.60 0.16 44.67 4.34
131 132 2.808933 GCGGAATATTCCCCATGAACGA 60.809 50.000 25.60 0.00 44.67 3.85
132 133 1.535462 GCGGAATATTCCCCATGAACG 59.465 52.381 25.60 13.80 44.67 3.95
133 134 2.863809 AGCGGAATATTCCCCATGAAC 58.136 47.619 25.60 8.98 44.67 3.18
134 135 4.927267 ATAGCGGAATATTCCCCATGAA 57.073 40.909 25.60 8.55 44.67 2.57
135 136 5.104527 CCTTATAGCGGAATATTCCCCATGA 60.105 44.000 25.60 13.14 44.67 3.07
136 137 5.126067 CCTTATAGCGGAATATTCCCCATG 58.874 45.833 25.60 14.30 44.67 3.66
137 138 4.166144 CCCTTATAGCGGAATATTCCCCAT 59.834 45.833 25.60 18.15 44.67 4.00
138 139 3.521937 CCCTTATAGCGGAATATTCCCCA 59.478 47.826 25.60 13.04 44.67 4.96
139 140 3.522343 ACCCTTATAGCGGAATATTCCCC 59.478 47.826 25.60 18.43 44.67 4.81
140 141 4.838904 ACCCTTATAGCGGAATATTCCC 57.161 45.455 25.60 18.58 44.67 3.97
141 142 4.941873 CCAACCCTTATAGCGGAATATTCC 59.058 45.833 22.63 22.63 44.05 3.01
142 143 4.941873 CCCAACCCTTATAGCGGAATATTC 59.058 45.833 6.93 6.93 0.00 1.75
143 144 4.352893 ACCCAACCCTTATAGCGGAATATT 59.647 41.667 0.00 0.00 0.00 1.28
144 145 3.914435 ACCCAACCCTTATAGCGGAATAT 59.086 43.478 0.00 0.00 0.00 1.28
145 146 3.320129 ACCCAACCCTTATAGCGGAATA 58.680 45.455 0.00 0.00 0.00 1.75
146 147 2.132686 ACCCAACCCTTATAGCGGAAT 58.867 47.619 0.00 0.00 0.00 3.01
147 148 1.587066 ACCCAACCCTTATAGCGGAA 58.413 50.000 0.00 0.00 0.00 4.30
148 149 1.587066 AACCCAACCCTTATAGCGGA 58.413 50.000 0.00 0.00 0.00 5.54
149 150 2.021457 CAAACCCAACCCTTATAGCGG 58.979 52.381 0.00 0.00 0.00 5.52
150 151 2.943033 CTCAAACCCAACCCTTATAGCG 59.057 50.000 0.00 0.00 0.00 4.26
151 152 3.288092 CCTCAAACCCAACCCTTATAGC 58.712 50.000 0.00 0.00 0.00 2.97
152 153 3.268595 ACCCTCAAACCCAACCCTTATAG 59.731 47.826 0.00 0.00 0.00 1.31
153 154 3.270812 ACCCTCAAACCCAACCCTTATA 58.729 45.455 0.00 0.00 0.00 0.98
154 155 2.078611 ACCCTCAAACCCAACCCTTAT 58.921 47.619 0.00 0.00 0.00 1.73
155 156 1.536644 ACCCTCAAACCCAACCCTTA 58.463 50.000 0.00 0.00 0.00 2.69
156 157 0.639943 AACCCTCAAACCCAACCCTT 59.360 50.000 0.00 0.00 0.00 3.95
157 158 0.187606 GAACCCTCAAACCCAACCCT 59.812 55.000 0.00 0.00 0.00 4.34
158 159 0.187606 AGAACCCTCAAACCCAACCC 59.812 55.000 0.00 0.00 0.00 4.11
159 160 2.963599 TAGAACCCTCAAACCCAACC 57.036 50.000 0.00 0.00 0.00 3.77
160 161 4.663334 AGATTAGAACCCTCAAACCCAAC 58.337 43.478 0.00 0.00 0.00 3.77
161 162 5.333566 AAGATTAGAACCCTCAAACCCAA 57.666 39.130 0.00 0.00 0.00 4.12
162 163 5.076873 CAAAGATTAGAACCCTCAAACCCA 58.923 41.667 0.00 0.00 0.00 4.51
163 164 5.077564 ACAAAGATTAGAACCCTCAAACCC 58.922 41.667 0.00 0.00 0.00 4.11
164 165 6.004574 AGACAAAGATTAGAACCCTCAAACC 58.995 40.000 0.00 0.00 0.00 3.27
165 166 6.937465 AGAGACAAAGATTAGAACCCTCAAAC 59.063 38.462 0.00 0.00 0.00 2.93
166 167 6.936900 CAGAGACAAAGATTAGAACCCTCAAA 59.063 38.462 0.00 0.00 0.00 2.69
167 168 6.043243 ACAGAGACAAAGATTAGAACCCTCAA 59.957 38.462 0.00 0.00 0.00 3.02
168 169 5.544176 ACAGAGACAAAGATTAGAACCCTCA 59.456 40.000 0.00 0.00 0.00 3.86
169 170 6.043854 ACAGAGACAAAGATTAGAACCCTC 57.956 41.667 0.00 0.00 0.00 4.30
170 171 6.441088 AACAGAGACAAAGATTAGAACCCT 57.559 37.500 0.00 0.00 0.00 4.34
171 172 7.511959 AAAACAGAGACAAAGATTAGAACCC 57.488 36.000 0.00 0.00 0.00 4.11
172 173 8.621286 TGAAAAACAGAGACAAAGATTAGAACC 58.379 33.333 0.00 0.00 0.00 3.62
175 176 8.621286 GGTTGAAAAACAGAGACAAAGATTAGA 58.379 33.333 0.00 0.00 30.22 2.10
176 177 7.862873 GGGTTGAAAAACAGAGACAAAGATTAG 59.137 37.037 0.00 0.00 32.77 1.73
177 178 7.468084 CGGGTTGAAAAACAGAGACAAAGATTA 60.468 37.037 0.00 0.00 32.77 1.75
178 179 6.573434 GGGTTGAAAAACAGAGACAAAGATT 58.427 36.000 0.00 0.00 32.77 2.40
179 180 5.221048 CGGGTTGAAAAACAGAGACAAAGAT 60.221 40.000 0.00 0.00 32.77 2.40
180 181 4.095782 CGGGTTGAAAAACAGAGACAAAGA 59.904 41.667 0.00 0.00 32.77 2.52
181 182 4.142469 ACGGGTTGAAAAACAGAGACAAAG 60.142 41.667 0.00 0.00 32.77 2.77
182 183 3.759618 ACGGGTTGAAAAACAGAGACAAA 59.240 39.130 0.00 0.00 32.77 2.83
183 184 3.349022 ACGGGTTGAAAAACAGAGACAA 58.651 40.909 0.00 0.00 32.77 3.18
184 185 2.993937 ACGGGTTGAAAAACAGAGACA 58.006 42.857 0.00 0.00 32.77 3.41
185 186 5.488645 TTTACGGGTTGAAAAACAGAGAC 57.511 39.130 0.00 0.00 32.77 3.36
186 187 6.512342 TTTTTACGGGTTGAAAAACAGAGA 57.488 33.333 0.00 0.00 32.77 3.10
187 188 6.292114 GCATTTTTACGGGTTGAAAAACAGAG 60.292 38.462 0.00 0.00 37.35 3.35
188 189 5.520649 GCATTTTTACGGGTTGAAAAACAGA 59.479 36.000 0.00 0.00 37.35 3.41
189 190 5.292101 TGCATTTTTACGGGTTGAAAAACAG 59.708 36.000 0.00 0.00 37.35 3.16
190 191 5.063564 GTGCATTTTTACGGGTTGAAAAACA 59.936 36.000 0.00 0.00 37.35 2.83
191 192 5.063564 TGTGCATTTTTACGGGTTGAAAAAC 59.936 36.000 0.00 0.00 37.35 2.43
192 193 5.175859 TGTGCATTTTTACGGGTTGAAAAA 58.824 33.333 0.00 0.00 38.51 1.94
193 194 4.755411 TGTGCATTTTTACGGGTTGAAAA 58.245 34.783 0.00 0.00 0.00 2.29
194 195 4.386867 TGTGCATTTTTACGGGTTGAAA 57.613 36.364 0.00 0.00 0.00 2.69
195 196 4.386867 TTGTGCATTTTTACGGGTTGAA 57.613 36.364 0.00 0.00 0.00 2.69
196 197 4.386867 TTTGTGCATTTTTACGGGTTGA 57.613 36.364 0.00 0.00 0.00 3.18
197 198 5.470845 TTTTTGTGCATTTTTACGGGTTG 57.529 34.783 0.00 0.00 0.00 3.77
219 220 9.679661 AGTGTTTTAAGGGTTCAAAAATGATTT 57.320 25.926 0.00 0.00 0.00 2.17
221 222 9.981114 CTAGTGTTTTAAGGGTTCAAAAATGAT 57.019 29.630 0.00 0.00 0.00 2.45
222 223 8.973182 ACTAGTGTTTTAAGGGTTCAAAAATGA 58.027 29.630 0.00 0.00 0.00 2.57
223 224 9.030301 CACTAGTGTTTTAAGGGTTCAAAAATG 57.970 33.333 15.06 0.00 0.00 2.32
224 225 8.973182 TCACTAGTGTTTTAAGGGTTCAAAAAT 58.027 29.630 21.99 0.00 0.00 1.82
225 226 8.350852 TCACTAGTGTTTTAAGGGTTCAAAAA 57.649 30.769 21.99 0.00 0.00 1.94
226 227 7.067737 CCTCACTAGTGTTTTAAGGGTTCAAAA 59.932 37.037 21.99 0.00 0.00 2.44
227 228 6.544564 CCTCACTAGTGTTTTAAGGGTTCAAA 59.455 38.462 21.99 0.00 0.00 2.69
228 229 6.059484 CCTCACTAGTGTTTTAAGGGTTCAA 58.941 40.000 21.99 0.00 0.00 2.69
229 230 5.455612 CCCTCACTAGTGTTTTAAGGGTTCA 60.456 44.000 27.44 5.45 37.72 3.18
230 231 5.001874 CCCTCACTAGTGTTTTAAGGGTTC 58.998 45.833 27.44 0.00 37.72 3.62
231 232 4.981812 CCCTCACTAGTGTTTTAAGGGTT 58.018 43.478 27.44 0.00 37.72 4.11
232 233 4.635699 CCCTCACTAGTGTTTTAAGGGT 57.364 45.455 27.44 0.00 37.72 4.34
233 234 4.635699 ACCCTCACTAGTGTTTTAAGGG 57.364 45.455 31.22 31.22 46.13 3.95
234 235 6.059484 TCAAACCCTCACTAGTGTTTTAAGG 58.941 40.000 21.99 19.16 0.00 2.69
235 236 6.204882 CCTCAAACCCTCACTAGTGTTTTAAG 59.795 42.308 21.99 11.59 0.00 1.85
236 237 6.059484 CCTCAAACCCTCACTAGTGTTTTAA 58.941 40.000 21.99 1.87 0.00 1.52
237 238 5.455612 CCCTCAAACCCTCACTAGTGTTTTA 60.456 44.000 21.99 6.58 0.00 1.52
238 239 4.461198 CCTCAAACCCTCACTAGTGTTTT 58.539 43.478 21.99 13.74 0.00 2.43
239 240 3.181443 CCCTCAAACCCTCACTAGTGTTT 60.181 47.826 21.99 12.32 0.00 2.83
240 241 2.372172 CCCTCAAACCCTCACTAGTGTT 59.628 50.000 21.99 6.70 0.00 3.32
241 242 1.978580 CCCTCAAACCCTCACTAGTGT 59.021 52.381 21.99 0.00 0.00 3.55
242 243 1.978580 ACCCTCAAACCCTCACTAGTG 59.021 52.381 17.17 17.17 0.00 2.74
243 244 2.417719 ACCCTCAAACCCTCACTAGT 57.582 50.000 0.00 0.00 0.00 2.57
244 245 3.072476 TCAAACCCTCAAACCCTCACTAG 59.928 47.826 0.00 0.00 0.00 2.57
245 246 3.050089 TCAAACCCTCAAACCCTCACTA 58.950 45.455 0.00 0.00 0.00 2.74
246 247 1.850345 TCAAACCCTCAAACCCTCACT 59.150 47.619 0.00 0.00 0.00 3.41
247 248 2.230660 CTCAAACCCTCAAACCCTCAC 58.769 52.381 0.00 0.00 0.00 3.51
248 249 1.144913 CCTCAAACCCTCAAACCCTCA 59.855 52.381 0.00 0.00 0.00 3.86
249 250 1.423921 TCCTCAAACCCTCAAACCCTC 59.576 52.381 0.00 0.00 0.00 4.30
250 251 1.529744 TCCTCAAACCCTCAAACCCT 58.470 50.000 0.00 0.00 0.00 4.34
251 252 2.604912 ATCCTCAAACCCTCAAACCC 57.395 50.000 0.00 0.00 0.00 4.11
252 253 3.767711 AGAATCCTCAAACCCTCAAACC 58.232 45.455 0.00 0.00 0.00 3.27
253 254 5.561679 AGTAGAATCCTCAAACCCTCAAAC 58.438 41.667 0.00 0.00 0.00 2.93
254 255 5.843019 AGTAGAATCCTCAAACCCTCAAA 57.157 39.130 0.00 0.00 0.00 2.69
255 256 6.023603 ACTAGTAGAATCCTCAAACCCTCAA 58.976 40.000 3.59 0.00 0.00 3.02
256 257 5.590818 ACTAGTAGAATCCTCAAACCCTCA 58.409 41.667 3.59 0.00 0.00 3.86
257 258 7.657023 TTACTAGTAGAATCCTCAAACCCTC 57.343 40.000 3.59 0.00 0.00 4.30
258 259 7.419172 GCATTACTAGTAGAATCCTCAAACCCT 60.419 40.741 3.59 0.00 0.00 4.34
259 260 6.706716 GCATTACTAGTAGAATCCTCAAACCC 59.293 42.308 3.59 0.00 0.00 4.11
260 261 7.501844 AGCATTACTAGTAGAATCCTCAAACC 58.498 38.462 3.59 0.00 0.00 3.27
261 262 8.417884 AGAGCATTACTAGTAGAATCCTCAAAC 58.582 37.037 10.57 0.00 0.00 2.93
262 263 8.540507 AGAGCATTACTAGTAGAATCCTCAAA 57.459 34.615 10.57 0.00 0.00 2.69
263 264 9.069082 GTAGAGCATTACTAGTAGAATCCTCAA 57.931 37.037 10.57 0.00 0.00 3.02
264 265 8.218488 TGTAGAGCATTACTAGTAGAATCCTCA 58.782 37.037 10.57 5.33 0.00 3.86
265 266 8.508875 GTGTAGAGCATTACTAGTAGAATCCTC 58.491 40.741 3.59 2.25 0.00 3.71
266 267 7.999545 TGTGTAGAGCATTACTAGTAGAATCCT 59.000 37.037 3.59 0.00 0.00 3.24
267 268 8.167605 TGTGTAGAGCATTACTAGTAGAATCC 57.832 38.462 3.59 0.00 0.00 3.01
269 270 9.804758 GTTTGTGTAGAGCATTACTAGTAGAAT 57.195 33.333 3.59 0.00 0.00 2.40
270 271 8.248945 GGTTTGTGTAGAGCATTACTAGTAGAA 58.751 37.037 3.59 0.00 0.00 2.10
271 272 7.395206 TGGTTTGTGTAGAGCATTACTAGTAGA 59.605 37.037 3.59 0.00 0.00 2.59
272 273 7.544622 TGGTTTGTGTAGAGCATTACTAGTAG 58.455 38.462 2.23 0.00 0.00 2.57
273 274 7.470935 TGGTTTGTGTAGAGCATTACTAGTA 57.529 36.000 0.00 0.00 0.00 1.82
274 275 6.354794 TGGTTTGTGTAGAGCATTACTAGT 57.645 37.500 0.00 0.00 0.00 2.57
275 276 6.183360 GCTTGGTTTGTGTAGAGCATTACTAG 60.183 42.308 0.00 0.00 0.00 2.57
276 277 5.642063 GCTTGGTTTGTGTAGAGCATTACTA 59.358 40.000 0.00 0.00 0.00 1.82
277 278 4.455877 GCTTGGTTTGTGTAGAGCATTACT 59.544 41.667 0.00 0.00 0.00 2.24
278 279 4.379499 GGCTTGGTTTGTGTAGAGCATTAC 60.379 45.833 0.00 0.00 32.01 1.89
279 280 3.756434 GGCTTGGTTTGTGTAGAGCATTA 59.244 43.478 0.00 0.00 32.01 1.90
280 281 2.558359 GGCTTGGTTTGTGTAGAGCATT 59.442 45.455 0.00 0.00 32.01 3.56
281 282 2.162681 GGCTTGGTTTGTGTAGAGCAT 58.837 47.619 0.00 0.00 32.01 3.79
282 283 1.133945 TGGCTTGGTTTGTGTAGAGCA 60.134 47.619 0.00 0.00 32.01 4.26
283 284 1.604604 TGGCTTGGTTTGTGTAGAGC 58.395 50.000 0.00 0.00 0.00 4.09
284 285 3.380004 TGTTTGGCTTGGTTTGTGTAGAG 59.620 43.478 0.00 0.00 0.00 2.43
285 286 3.357203 TGTTTGGCTTGGTTTGTGTAGA 58.643 40.909 0.00 0.00 0.00 2.59
289 290 2.418280 GGTTTGTTTGGCTTGGTTTGTG 59.582 45.455 0.00 0.00 0.00 3.33
299 300 1.068541 GTCGATCCAGGTTTGTTTGGC 60.069 52.381 0.00 0.00 34.38 4.52
304 305 0.246635 CTCGGTCGATCCAGGTTTGT 59.753 55.000 0.00 0.00 35.57 2.83
324 325 0.313357 GAGTCGAATAGTACCCGGGC 59.687 60.000 24.08 4.85 0.00 6.13
326 327 1.262683 GTCGAGTCGAATAGTACCCGG 59.737 57.143 18.42 0.00 37.72 5.73
329 330 3.002144 GGTGAGTCGAGTCGAATAGTACC 59.998 52.174 18.42 19.62 37.72 3.34
331 332 3.201290 GGGTGAGTCGAGTCGAATAGTA 58.799 50.000 18.42 3.36 37.72 1.82
333 334 2.014857 TGGGTGAGTCGAGTCGAATAG 58.985 52.381 18.42 0.00 37.72 1.73
334 335 2.118313 TGGGTGAGTCGAGTCGAATA 57.882 50.000 18.42 3.58 37.72 1.75
336 337 0.313043 GTTGGGTGAGTCGAGTCGAA 59.687 55.000 18.42 0.00 37.72 3.71
337 338 1.521450 GGTTGGGTGAGTCGAGTCGA 61.521 60.000 12.09 12.09 0.00 4.20
338 339 1.080705 GGTTGGGTGAGTCGAGTCG 60.081 63.158 15.29 6.09 0.00 4.18
339 340 0.608640 ATGGTTGGGTGAGTCGAGTC 59.391 55.000 13.54 13.54 0.00 3.36
340 341 1.056660 AATGGTTGGGTGAGTCGAGT 58.943 50.000 0.00 0.00 0.00 4.18
341 342 3.543680 ATAATGGTTGGGTGAGTCGAG 57.456 47.619 0.00 0.00 0.00 4.04
346 347 4.599041 TGAAGGAATAATGGTTGGGTGAG 58.401 43.478 0.00 0.00 0.00 3.51
347 348 4.666412 TGAAGGAATAATGGTTGGGTGA 57.334 40.909 0.00 0.00 0.00 4.02
352 353 3.631686 TGGCGATGAAGGAATAATGGTTG 59.368 43.478 0.00 0.00 0.00 3.77
377 378 4.394729 TCAGCTTCCGTTCACCTATTTTT 58.605 39.130 0.00 0.00 0.00 1.94
382 383 1.919240 TCTCAGCTTCCGTTCACCTA 58.081 50.000 0.00 0.00 0.00 3.08
386 387 3.217242 GCTTCTCAGCTTCCGTTCA 57.783 52.632 0.00 0.00 43.51 3.18
460 471 4.232061 CCAACCCAGCCCAACCCA 62.232 66.667 0.00 0.00 0.00 4.51
593 604 1.423161 GGATCCCCTCCCTGATCTTTG 59.577 57.143 0.00 0.00 38.19 2.77
731 749 2.373224 ACTTGTACTAGTACCTCGCCC 58.627 52.381 26.41 4.27 35.26 6.13
732 750 4.446371 TCTACTTGTACTAGTACCTCGCC 58.554 47.826 26.41 4.96 35.26 5.54
741 759 5.127491 CAGTCCTCCCTCTACTTGTACTAG 58.873 50.000 2.56 2.56 0.00 2.57
743 761 3.878527 GCAGTCCTCCCTCTACTTGTACT 60.879 52.174 0.00 0.00 0.00 2.73
757 775 1.198759 TACCACCCCAAGCAGTCCTC 61.199 60.000 0.00 0.00 0.00 3.71
758 776 1.151899 TACCACCCCAAGCAGTCCT 60.152 57.895 0.00 0.00 0.00 3.85
759 777 1.299976 CTACCACCCCAAGCAGTCC 59.700 63.158 0.00 0.00 0.00 3.85
760 778 1.299976 CCTACCACCCCAAGCAGTC 59.700 63.158 0.00 0.00 0.00 3.51
761 779 2.907179 GCCTACCACCCCAAGCAGT 61.907 63.158 0.00 0.00 0.00 4.40
762 780 2.044946 GCCTACCACCCCAAGCAG 60.045 66.667 0.00 0.00 0.00 4.24
763 781 2.856494 TGCCTACCACCCCAAGCA 60.856 61.111 0.00 0.00 0.00 3.91
765 783 2.044946 GCTGCCTACCACCCCAAG 60.045 66.667 0.00 0.00 0.00 3.61
767 785 3.329889 CAGCTGCCTACCACCCCA 61.330 66.667 0.00 0.00 0.00 4.96
769 787 3.009115 TCCAGCTGCCTACCACCC 61.009 66.667 8.66 0.00 0.00 4.61
839 864 0.394192 CAGCGGATAATGCCAGGAGA 59.606 55.000 0.00 0.00 0.00 3.71
861 886 5.830991 AGCGACCTCTAATTATCTCAGACTT 59.169 40.000 0.00 0.00 0.00 3.01
876 901 5.133941 TCAATCAATCTAGTAGCGACCTCT 58.866 41.667 0.00 0.00 0.00 3.69
883 908 6.767902 TCAACCCAATCAATCAATCTAGTAGC 59.232 38.462 0.00 0.00 0.00 3.58
919 949 5.220739 CGGATCAATCAAAGAGCTTTACCTG 60.221 44.000 0.00 0.00 0.00 4.00
932 962 1.064758 CCCAAGGGACGGATCAATCAA 60.065 52.381 0.00 0.00 37.50 2.57
934 964 0.546598 ACCCAAGGGACGGATCAATC 59.453 55.000 13.15 0.00 38.96 2.67
935 965 0.546598 GACCCAAGGGACGGATCAAT 59.453 55.000 13.15 0.00 38.96 2.57
1027 1057 2.358247 CGGACCAAACCACCCTCG 60.358 66.667 0.00 0.00 0.00 4.63
1032 1062 1.599797 CCTGACCGGACCAAACCAC 60.600 63.158 9.46 0.00 33.16 4.16
1076 1113 0.669318 TCGACACGCAAGAACCCATC 60.669 55.000 0.00 0.00 43.62 3.51
1147 1184 4.250305 ACACCTTGCGGCGGAACT 62.250 61.111 10.55 0.00 0.00 3.01
1253 1290 4.662961 TGCGTGAGGTGGAGCGTG 62.663 66.667 0.00 0.00 0.00 5.34
1314 1351 1.299850 GAGGCGTTTGGTTTGGTGC 60.300 57.895 0.00 0.00 0.00 5.01
1321 1358 0.878961 GAGAACACGAGGCGTTTGGT 60.879 55.000 0.00 0.00 38.32 3.67
1324 1361 1.663702 CGGAGAACACGAGGCGTTT 60.664 57.895 0.00 0.00 38.32 3.60
1551 1598 1.609061 GGGGATGGATATGTGAGCACG 60.609 57.143 0.00 0.00 0.00 5.34
1562 1617 0.925720 TTGCAAGGAGGGGGATGGAT 60.926 55.000 0.00 0.00 0.00 3.41
1564 1619 0.252193 TTTTGCAAGGAGGGGGATGG 60.252 55.000 0.00 0.00 0.00 3.51
1565 1620 1.758862 GATTTTGCAAGGAGGGGGATG 59.241 52.381 0.00 0.00 0.00 3.51
1566 1621 1.343377 GGATTTTGCAAGGAGGGGGAT 60.343 52.381 0.00 0.00 0.00 3.85
1567 1622 0.041090 GGATTTTGCAAGGAGGGGGA 59.959 55.000 0.00 0.00 0.00 4.81
1568 1623 0.252193 TGGATTTTGCAAGGAGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
2000 3199 6.144241 CGAAATGCTGATGAACAAATTGAACA 59.856 34.615 0.00 0.00 0.00 3.18
2007 3206 4.278170 AGGAACGAAATGCTGATGAACAAA 59.722 37.500 0.00 0.00 0.00 2.83
2042 3241 5.563842 CCAGCTGAATTAATCGTCAGTTTC 58.436 41.667 17.39 3.35 42.72 2.78
2054 3254 4.540153 GCCGAGCCAGCTGAATTA 57.460 55.556 17.39 0.00 0.00 1.40
2208 3410 4.083802 GCACATCAGGAGTTTCAGTAACAC 60.084 45.833 0.00 0.00 39.30 3.32
2245 3447 2.874701 GGCATGCTGACAGACGAAATAT 59.125 45.455 18.92 0.00 0.00 1.28
2484 3693 8.276252 ACAAATCAGTACAACTTGTTAAGTGT 57.724 30.769 0.00 0.00 41.91 3.55
2497 3706 4.141287 CCCAAAGGTGACAAATCAGTACA 58.859 43.478 0.00 0.00 34.75 2.90
2614 3899 3.054655 TGAAATACAGGACCAGGCTAACC 60.055 47.826 0.00 0.00 0.00 2.85
2726 4011 9.398170 CAAGGTACTGAAAATTGTTAGATTGTG 57.602 33.333 0.00 0.00 40.86 3.33
2954 4242 3.376935 CTGGGGCCTAGACAGCACG 62.377 68.421 12.23 0.00 33.14 5.34
2993 4281 6.816640 TGTGAGACAGCATAATTGGTTAGTAC 59.183 38.462 0.00 0.00 0.00 2.73
3060 4367 1.083401 CGCACACGTTTCAGTCAGC 60.083 57.895 0.00 0.00 33.53 4.26
3158 4465 3.560534 GAAGGTCTCAAGGCCCTTC 57.439 57.895 0.00 0.00 45.29 3.46
3238 4553 0.610232 CAAGGCCAAGAACAGAGGGG 60.610 60.000 5.01 0.00 0.00 4.79
3263 4578 6.016360 CCAACAAAATACTCCTCATGACAACA 60.016 38.462 0.00 0.00 0.00 3.33
3268 4583 4.701651 CAGCCAACAAAATACTCCTCATGA 59.298 41.667 0.00 0.00 0.00 3.07
3419 4734 1.598132 CAGCTTCATTCATCGCTGGAG 59.402 52.381 0.00 0.00 44.48 3.86
3471 4786 4.727507 ATCTCCCGCTATATACAGCTTG 57.272 45.455 0.81 0.00 39.51 4.01
3484 4799 1.887854 GTTCCTACCTCTATCTCCCGC 59.112 57.143 0.00 0.00 0.00 6.13
3496 4814 5.366829 ACAAATTTGCGTTAGTTCCTACC 57.633 39.130 18.12 0.00 0.00 3.18
3644 4976 0.968405 TTGGCAACTTGGGCAATCTC 59.032 50.000 0.00 0.00 46.77 2.75
3653 4985 1.788308 CAATGCGACTTTGGCAACTTG 59.212 47.619 0.00 0.00 44.66 3.16
3666 4998 4.633565 TGCACAAGATTATGTACAATGCGA 59.366 37.500 0.00 0.00 30.84 5.10
3715 5052 3.077359 CTCCTCTTCCTTTTCATGCGTT 58.923 45.455 0.00 0.00 0.00 4.84
3748 5085 1.260561 GTTTACACACAGCACGAGTGG 59.739 52.381 5.32 0.00 40.20 4.00
3757 5094 4.098654 TGACCAATTTGGGTTTACACACAG 59.901 41.667 19.39 0.00 43.37 3.66
3760 5097 4.098654 CAGTGACCAATTTGGGTTTACACA 59.901 41.667 19.39 5.40 43.37 3.72
3781 5118 4.177026 CCATGTTTCCTCGACTCTTACAG 58.823 47.826 0.00 0.00 0.00 2.74
3792 5129 1.995376 AACCACCACCATGTTTCCTC 58.005 50.000 0.00 0.00 0.00 3.71
3794 5131 1.760029 ACAAACCACCACCATGTTTCC 59.240 47.619 0.00 0.00 30.19 3.13
3856 5193 8.655970 TGAACACAATATACAAGAAAGATCACG 58.344 33.333 0.00 0.00 0.00 4.35
3858 5195 9.500785 TGTGAACACAATATACAAGAAAGATCA 57.499 29.630 5.11 0.00 38.56 2.92
3877 5214 2.286125 CGCTCATTCGTTTGTGTGAACA 60.286 45.455 0.00 0.00 0.00 3.18
3904 5241 5.689514 CCATCTCTACAATACTCGCTTTCAG 59.310 44.000 0.00 0.00 0.00 3.02
3911 5248 8.759641 CAGAATTTTCCATCTCTACAATACTCG 58.240 37.037 0.00 0.00 0.00 4.18
3915 5252 8.101309 TCCCAGAATTTTCCATCTCTACAATA 57.899 34.615 0.00 0.00 0.00 1.90
3960 5297 5.242393 CCCGGATTGAATTTGCAAGATATCT 59.758 40.000 0.73 0.00 0.00 1.98
3965 5302 2.491693 GACCCGGATTGAATTTGCAAGA 59.508 45.455 0.73 0.00 0.00 3.02
3980 5317 1.688735 TCAAGCTGATCATAGACCCGG 59.311 52.381 0.00 0.00 0.00 5.73
3985 5322 3.805971 CGTGCATTCAAGCTGATCATAGA 59.194 43.478 0.00 0.00 34.99 1.98
3986 5323 3.805971 TCGTGCATTCAAGCTGATCATAG 59.194 43.478 0.00 0.00 34.99 2.23
3996 5333 3.179048 TGTATCTCGTCGTGCATTCAAG 58.821 45.455 0.00 0.00 0.00 3.02
4022 5359 7.066284 TCCTGCTTGTAGAGATAGCAAAAATTC 59.934 37.037 0.00 0.00 43.64 2.17
4029 5366 4.222810 TGTTTCCTGCTTGTAGAGATAGCA 59.777 41.667 0.00 0.00 42.22 3.49
4065 5402 1.737838 TGGATCACCGTTTGAGCATC 58.262 50.000 0.00 0.00 42.92 3.91
4086 5423 0.599060 TCTTGTCGCACCATCACGTA 59.401 50.000 0.00 0.00 0.00 3.57
4089 5426 1.067565 TCTCTCTTGTCGCACCATCAC 60.068 52.381 0.00 0.00 0.00 3.06
4124 5461 8.160765 TCCATCTTTATCAACCAAGTACTTGAA 58.839 33.333 32.50 17.04 42.93 2.69
4150 5487 4.310740 AGGAGGACAATCCCTTATGATGT 58.689 43.478 0.00 0.00 40.53 3.06
4167 5504 1.274728 CAGATTGGCTATCGGAGGAGG 59.725 57.143 3.26 0.00 38.36 4.30
4170 5507 3.923354 CCAGATTGGCTATCGGAGG 57.077 57.895 10.23 7.07 38.36 4.30
4229 5566 1.180456 TTTCGTGGTCCGCCTCTGTA 61.180 55.000 0.00 0.00 36.19 2.74
4233 5570 4.052519 TTTTTCGTGGTCCGCCTC 57.947 55.556 0.00 0.00 36.19 4.70
4354 9428 7.022979 TCTATTGAAACATGTCTGCAATTTCG 58.977 34.615 19.35 12.01 36.95 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.