Multiple sequence alignment - TraesCS5B01G401300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G401300 chr5B 100.000 7119 0 0 1 7119 578081415 578088533 0.000000e+00 13147.0
1 TraesCS5B01G401300 chr5D 93.830 2982 116 24 3581 6544 470770067 470772998 0.000000e+00 4425.0
2 TraesCS5B01G401300 chr5D 90.048 3105 137 72 389 3409 470767038 470770054 0.000000e+00 3864.0
3 TraesCS5B01G401300 chr5D 86.066 488 30 16 6604 7073 470773260 470773727 2.310000e-134 490.0
4 TraesCS5B01G401300 chr5A 93.958 2830 124 29 3547 6356 591154358 591157160 0.000000e+00 4235.0
5 TraesCS5B01G401300 chr5A 87.207 3408 178 96 311 3546 591151005 591154326 0.000000e+00 3640.0
6 TraesCS5B01G401300 chr5A 81.955 665 62 28 6370 6996 591157642 591158286 1.770000e-140 510.0
7 TraesCS5B01G401300 chr5A 96.552 58 2 0 246 303 591150916 591150973 5.880000e-16 97.1
8 TraesCS5B01G401300 chr2B 96.330 109 4 0 132 240 764753980 764753872 5.670000e-41 180.0
9 TraesCS5B01G401300 chr2B 94.643 112 6 0 129 240 693737241 693737130 2.640000e-39 174.0
10 TraesCS5B01G401300 chr2B 92.174 115 9 0 129 243 76928416 76928530 5.710000e-36 163.0
11 TraesCS5B01G401300 chr3A 95.455 110 5 0 131 240 686240704 686240813 7.340000e-40 176.0
12 TraesCS5B01G401300 chr3A 92.241 116 7 2 133 248 71250400 71250287 5.710000e-36 163.0
13 TraesCS5B01G401300 chr1B 94.643 112 6 0 132 243 413985472 413985361 2.640000e-39 174.0
14 TraesCS5B01G401300 chr3B 93.750 112 7 0 129 240 822718763 822718652 1.230000e-37 169.0
15 TraesCS5B01G401300 chr2A 93.750 112 7 0 129 240 180979266 180979155 1.230000e-37 169.0
16 TraesCS5B01G401300 chr6A 94.444 108 6 0 133 240 64543175 64543068 4.420000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G401300 chr5B 578081415 578088533 7118 False 13147.000000 13147 100.000000 1 7119 1 chr5B.!!$F1 7118
1 TraesCS5B01G401300 chr5D 470767038 470773727 6689 False 2926.333333 4425 89.981333 389 7073 3 chr5D.!!$F1 6684
2 TraesCS5B01G401300 chr5A 591150916 591158286 7370 False 2120.525000 4235 89.918000 246 6996 4 chr5A.!!$F1 6750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 759 0.035056 AGGTGGGATGAAGGAAAGCG 60.035 55.000 0.00 0.0 0.00 4.68 F
904 1031 0.716591 ATATATCAGGCCGGGGGAGA 59.283 55.000 2.18 0.0 0.00 3.71 F
1564 1738 0.812811 TCTGCTGCCGCTGATGAATC 60.813 55.000 5.60 0.0 38.90 2.52 F
2332 2561 0.307453 GTCGATGCAGCAACACAACA 59.693 50.000 1.53 0.0 0.00 3.33 F
2333 2562 0.307453 TCGATGCAGCAACACAACAC 59.693 50.000 1.53 0.0 0.00 3.32 F
3312 3556 0.616371 TGGGGCTGCTACGTAACATT 59.384 50.000 0.00 0.0 0.00 2.71 F
4760 5041 0.034089 AGGATAGGGCTTGTGGCAAC 60.034 55.000 0.00 0.0 44.01 4.17 F
5417 5698 1.371145 GCCTAGCATCTCGTCGCTC 60.371 63.158 0.00 0.0 39.70 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 2108 0.101219 CGATGACTGATGAGCGACCA 59.899 55.000 0.00 0.00 0.00 4.02 R
2066 2291 0.463295 CCATCGCTGCTCCAATCTGT 60.463 55.000 0.00 0.00 0.00 3.41 R
2490 2727 0.812811 TCTGCGATGCATCTTCCAGC 60.813 55.000 23.73 18.67 38.13 4.85 R
4222 4497 0.318955 AATGCTTTGGTTCGCAGCAC 60.319 50.000 0.00 0.00 46.09 4.40 R
4342 4620 4.572985 TGCTCCAAGTCACTTGAAATTG 57.427 40.909 19.75 1.64 43.42 2.32 R
5298 5579 0.528017 GAGACGGTCTGCTCATCACA 59.472 55.000 16.72 0.00 0.00 3.58 R
6109 6404 0.108207 CACATCATCTCCAGCCTCCC 59.892 60.000 0.00 0.00 0.00 4.30 R
7030 8046 0.098376 CGGTGTACAGCGTCCTACTC 59.902 60.000 33.16 1.89 46.01 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.919987 GTAGGCCGTACCGCGCTC 62.920 72.222 5.56 0.00 46.52 5.03
27 28 3.755526 TAGGCCGTACCGCGCTCTA 62.756 63.158 5.56 0.00 46.52 2.43
28 29 4.919987 GGCCGTACCGCGCTCTAC 62.920 72.222 5.56 3.43 39.71 2.59
29 30 4.919987 GCCGTACCGCGCTCTACC 62.920 72.222 5.56 0.00 39.71 3.18
30 31 3.511595 CCGTACCGCGCTCTACCA 61.512 66.667 5.56 0.00 39.71 3.25
31 32 2.277756 CGTACCGCGCTCTACCAC 60.278 66.667 5.56 0.00 0.00 4.16
32 33 2.103736 GTACCGCGCTCTACCACC 59.896 66.667 5.56 0.00 0.00 4.61
33 34 2.044650 TACCGCGCTCTACCACCT 60.045 61.111 5.56 0.00 0.00 4.00
34 35 1.679977 TACCGCGCTCTACCACCTT 60.680 57.895 5.56 0.00 0.00 3.50
35 36 1.940883 TACCGCGCTCTACCACCTTG 61.941 60.000 5.56 0.00 0.00 3.61
36 37 2.509336 CGCGCTCTACCACCTTGG 60.509 66.667 5.56 0.00 45.02 3.61
37 38 2.125106 GCGCTCTACCACCTTGGG 60.125 66.667 0.00 0.00 43.37 4.12
38 39 2.125106 CGCTCTACCACCTTGGGC 60.125 66.667 0.00 0.00 43.37 5.36
39 40 2.125106 GCTCTACCACCTTGGGCG 60.125 66.667 0.00 0.00 43.37 6.13
40 41 2.125106 CTCTACCACCTTGGGCGC 60.125 66.667 0.00 0.00 43.37 6.53
41 42 3.682292 CTCTACCACCTTGGGCGCC 62.682 68.421 21.18 21.18 43.37 6.53
42 43 4.796495 CTACCACCTTGGGCGCCC 62.796 72.222 39.40 39.40 43.37 6.13
51 52 4.992740 TGGGCGCCCACAGCAATT 62.993 61.111 44.23 0.00 44.04 2.32
52 53 4.133796 GGGCGCCCACAGCAATTC 62.134 66.667 40.73 8.62 44.04 2.17
53 54 4.133796 GGCGCCCACAGCAATTCC 62.134 66.667 18.11 0.00 44.04 3.01
54 55 3.064324 GCGCCCACAGCAATTCCT 61.064 61.111 0.00 0.00 44.04 3.36
55 56 3.056313 GCGCCCACAGCAATTCCTC 62.056 63.158 0.00 0.00 44.04 3.71
56 57 2.409870 CGCCCACAGCAATTCCTCC 61.410 63.158 0.00 0.00 44.04 4.30
57 58 2.054453 GCCCACAGCAATTCCTCCC 61.054 63.158 0.00 0.00 42.97 4.30
58 59 1.693640 CCCACAGCAATTCCTCCCT 59.306 57.895 0.00 0.00 0.00 4.20
59 60 0.394899 CCCACAGCAATTCCTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
60 61 0.394899 CCACAGCAATTCCTCCCTCC 60.395 60.000 0.00 0.00 0.00 4.30
61 62 0.394899 CACAGCAATTCCTCCCTCCC 60.395 60.000 0.00 0.00 0.00 4.30
62 63 0.551131 ACAGCAATTCCTCCCTCCCT 60.551 55.000 0.00 0.00 0.00 4.20
63 64 0.182299 CAGCAATTCCTCCCTCCCTC 59.818 60.000 0.00 0.00 0.00 4.30
64 65 0.990818 AGCAATTCCTCCCTCCCTCC 60.991 60.000 0.00 0.00 0.00 4.30
65 66 2.000825 GCAATTCCTCCCTCCCTCCC 62.001 65.000 0.00 0.00 0.00 4.30
66 67 1.006227 AATTCCTCCCTCCCTCCCC 59.994 63.158 0.00 0.00 0.00 4.81
67 68 2.916553 AATTCCTCCCTCCCTCCCCG 62.917 65.000 0.00 0.00 0.00 5.73
77 78 2.189521 CCTCCCCGGGATTGTTCG 59.810 66.667 26.32 2.41 0.00 3.95
78 79 2.666098 CCTCCCCGGGATTGTTCGT 61.666 63.158 26.32 0.00 0.00 3.85
79 80 1.332144 CCTCCCCGGGATTGTTCGTA 61.332 60.000 26.32 0.00 0.00 3.43
80 81 0.104304 CTCCCCGGGATTGTTCGTAG 59.896 60.000 26.32 0.00 0.00 3.51
81 82 0.615544 TCCCCGGGATTGTTCGTAGT 60.616 55.000 26.32 0.00 0.00 2.73
82 83 1.113788 CCCCGGGATTGTTCGTAGTA 58.886 55.000 26.32 0.00 0.00 1.82
83 84 1.068127 CCCCGGGATTGTTCGTAGTAG 59.932 57.143 26.32 0.00 0.00 2.57
84 85 1.753073 CCCGGGATTGTTCGTAGTAGT 59.247 52.381 18.48 0.00 0.00 2.73
85 86 2.951642 CCCGGGATTGTTCGTAGTAGTA 59.048 50.000 18.48 0.00 0.00 1.82
86 87 3.004106 CCCGGGATTGTTCGTAGTAGTAG 59.996 52.174 18.48 0.00 0.00 2.57
87 88 3.879295 CCGGGATTGTTCGTAGTAGTAGA 59.121 47.826 0.00 0.00 0.00 2.59
88 89 4.518211 CCGGGATTGTTCGTAGTAGTAGAT 59.482 45.833 0.00 0.00 0.00 1.98
89 90 5.450171 CGGGATTGTTCGTAGTAGTAGATG 58.550 45.833 0.00 0.00 0.00 2.90
90 91 5.221130 GGGATTGTTCGTAGTAGTAGATGC 58.779 45.833 0.00 0.00 0.00 3.91
91 92 5.221130 GGATTGTTCGTAGTAGTAGATGCC 58.779 45.833 0.00 0.00 0.00 4.40
92 93 3.957671 TGTTCGTAGTAGTAGATGCCG 57.042 47.619 0.00 0.00 0.00 5.69
93 94 2.615447 TGTTCGTAGTAGTAGATGCCGG 59.385 50.000 0.00 0.00 0.00 6.13
94 95 1.233019 TCGTAGTAGTAGATGCCGGC 58.767 55.000 22.73 22.73 0.00 6.13
95 96 0.949397 CGTAGTAGTAGATGCCGGCA 59.051 55.000 34.80 34.80 0.00 5.69
96 97 1.069159 CGTAGTAGTAGATGCCGGCAG 60.069 57.143 35.36 12.56 0.00 4.85
97 98 1.955080 GTAGTAGTAGATGCCGGCAGT 59.045 52.381 35.36 25.79 0.00 4.40
98 99 0.747255 AGTAGTAGATGCCGGCAGTG 59.253 55.000 35.36 0.00 0.00 3.66
99 100 0.744874 GTAGTAGATGCCGGCAGTGA 59.255 55.000 35.36 18.85 0.00 3.41
100 101 1.032794 TAGTAGATGCCGGCAGTGAG 58.967 55.000 35.36 0.00 0.00 3.51
101 102 0.972983 AGTAGATGCCGGCAGTGAGT 60.973 55.000 35.36 18.34 0.00 3.41
102 103 0.807667 GTAGATGCCGGCAGTGAGTG 60.808 60.000 35.36 0.00 0.00 3.51
103 104 1.960040 TAGATGCCGGCAGTGAGTGG 61.960 60.000 35.36 0.00 0.00 4.00
104 105 3.612247 GATGCCGGCAGTGAGTGGT 62.612 63.158 35.36 15.73 0.00 4.16
105 106 2.238847 GATGCCGGCAGTGAGTGGTA 62.239 60.000 35.36 6.78 0.00 3.25
106 107 1.626356 ATGCCGGCAGTGAGTGGTAT 61.626 55.000 35.36 11.04 0.00 2.73
107 108 1.078426 GCCGGCAGTGAGTGGTATT 60.078 57.895 24.80 0.00 0.00 1.89
108 109 1.090052 GCCGGCAGTGAGTGGTATTC 61.090 60.000 24.80 0.00 0.00 1.75
109 110 0.249120 CCGGCAGTGAGTGGTATTCA 59.751 55.000 0.00 0.00 0.00 2.57
110 111 1.359848 CGGCAGTGAGTGGTATTCAC 58.640 55.000 0.00 0.00 46.39 3.18
126 127 8.900781 GTGGTATTCACTATAGTTACTCACTCA 58.099 37.037 1.56 0.00 42.86 3.41
127 128 9.121658 TGGTATTCACTATAGTTACTCACTCAG 57.878 37.037 1.56 0.00 36.88 3.35
128 129 9.339850 GGTATTCACTATAGTTACTCACTCAGA 57.660 37.037 1.56 0.00 36.88 3.27
138 139 6.358991 AGTTACTCACTCAGATAGTACTCCC 58.641 44.000 0.00 0.00 35.76 4.30
139 140 6.159046 AGTTACTCACTCAGATAGTACTCCCT 59.841 42.308 0.00 0.00 35.76 4.20
140 141 5.043737 ACTCACTCAGATAGTACTCCCTC 57.956 47.826 0.00 0.00 35.76 4.30
141 142 4.141344 ACTCACTCAGATAGTACTCCCTCC 60.141 50.000 0.00 0.00 35.76 4.30
142 143 3.142951 CACTCAGATAGTACTCCCTCCG 58.857 54.545 0.00 0.00 35.76 4.63
143 144 2.778850 ACTCAGATAGTACTCCCTCCGT 59.221 50.000 0.00 0.00 36.36 4.69
144 145 3.202595 ACTCAGATAGTACTCCCTCCGTT 59.797 47.826 0.00 0.00 36.36 4.44
145 146 3.816523 CTCAGATAGTACTCCCTCCGTTC 59.183 52.174 0.00 0.00 0.00 3.95
146 147 3.201487 TCAGATAGTACTCCCTCCGTTCA 59.799 47.826 0.00 0.00 0.00 3.18
147 148 4.141228 TCAGATAGTACTCCCTCCGTTCAT 60.141 45.833 0.00 0.00 0.00 2.57
148 149 4.585162 CAGATAGTACTCCCTCCGTTCATT 59.415 45.833 0.00 0.00 0.00 2.57
149 150 5.069251 CAGATAGTACTCCCTCCGTTCATTT 59.931 44.000 0.00 0.00 0.00 2.32
150 151 5.661759 AGATAGTACTCCCTCCGTTCATTTT 59.338 40.000 0.00 0.00 0.00 1.82
151 152 4.635699 AGTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
152 153 5.750352 AGTACTCCCTCCGTTCATTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
153 154 6.309389 AGTACTCCCTCCGTTCATTTTTAT 57.691 37.500 0.00 0.00 0.00 1.40
154 155 7.427989 AGTACTCCCTCCGTTCATTTTTATA 57.572 36.000 0.00 0.00 0.00 0.98
155 156 7.854337 AGTACTCCCTCCGTTCATTTTTATAA 58.146 34.615 0.00 0.00 0.00 0.98
156 157 7.985752 AGTACTCCCTCCGTTCATTTTTATAAG 59.014 37.037 0.00 0.00 0.00 1.73
157 158 6.954232 ACTCCCTCCGTTCATTTTTATAAGA 58.046 36.000 0.00 0.00 0.00 2.10
158 159 7.574607 ACTCCCTCCGTTCATTTTTATAAGAT 58.425 34.615 0.00 0.00 0.00 2.40
159 160 7.715686 ACTCCCTCCGTTCATTTTTATAAGATC 59.284 37.037 0.00 0.00 0.00 2.75
160 161 7.802117 TCCCTCCGTTCATTTTTATAAGATCT 58.198 34.615 0.00 0.00 0.00 2.75
161 162 8.272173 TCCCTCCGTTCATTTTTATAAGATCTT 58.728 33.333 13.56 13.56 0.00 2.40
162 163 8.345565 CCCTCCGTTCATTTTTATAAGATCTTG 58.654 37.037 18.47 0.00 0.00 3.02
163 164 9.109393 CCTCCGTTCATTTTTATAAGATCTTGA 57.891 33.333 18.47 1.68 0.00 3.02
178 179 9.730705 ATAAGATCTTGAAGACATTTCAGACAA 57.269 29.630 18.47 0.00 0.00 3.18
179 180 8.632906 AAGATCTTGAAGACATTTCAGACAAT 57.367 30.769 7.30 0.00 0.00 2.71
180 181 8.041829 AGATCTTGAAGACATTTCAGACAATG 57.958 34.615 0.00 0.00 39.67 2.82
182 183 6.962686 TCTTGAAGACATTTCAGACAATGTG 58.037 36.000 12.82 2.50 45.55 3.21
183 184 5.112220 TGAAGACATTTCAGACAATGTGC 57.888 39.130 12.82 7.29 45.55 4.57
184 185 4.579753 TGAAGACATTTCAGACAATGTGCA 59.420 37.500 12.82 0.00 45.55 4.57
185 186 5.067544 TGAAGACATTTCAGACAATGTGCAA 59.932 36.000 12.82 0.00 45.55 4.08
186 187 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
187 188 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
188 189 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
189 190 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
190 191 5.521010 ACATTTCAGACAATGTGCAAAACAG 59.479 36.000 0.00 0.00 44.19 3.16
191 192 4.717233 TTCAGACAATGTGCAAAACAGT 57.283 36.364 0.00 0.00 43.64 3.55
192 193 4.291540 TCAGACAATGTGCAAAACAGTC 57.708 40.909 0.00 0.00 43.64 3.51
193 194 3.947196 TCAGACAATGTGCAAAACAGTCT 59.053 39.130 0.00 4.03 42.21 3.24
194 195 5.122519 TCAGACAATGTGCAAAACAGTCTA 58.877 37.500 8.40 0.00 40.51 2.59
195 196 5.764686 TCAGACAATGTGCAAAACAGTCTAT 59.235 36.000 8.40 0.00 40.51 1.98
196 197 6.262944 TCAGACAATGTGCAAAACAGTCTATT 59.737 34.615 8.40 0.00 40.51 1.73
197 198 6.919662 CAGACAATGTGCAAAACAGTCTATTT 59.080 34.615 8.40 0.00 40.51 1.40
198 199 7.436080 CAGACAATGTGCAAAACAGTCTATTTT 59.564 33.333 8.40 0.00 40.51 1.82
199 200 7.436080 AGACAATGTGCAAAACAGTCTATTTTG 59.564 33.333 11.28 11.28 45.68 2.44
200 201 7.041107 ACAATGTGCAAAACAGTCTATTTTGT 58.959 30.769 15.82 0.00 45.03 2.83
201 202 7.010367 ACAATGTGCAAAACAGTCTATTTTGTG 59.990 33.333 15.82 9.35 45.03 3.33
202 203 5.960113 TGTGCAAAACAGTCTATTTTGTGT 58.040 33.333 15.82 0.00 45.03 3.72
203 204 6.393990 TGTGCAAAACAGTCTATTTTGTGTT 58.606 32.000 15.82 0.00 45.03 3.32
204 205 6.309980 TGTGCAAAACAGTCTATTTTGTGTTG 59.690 34.615 15.82 3.58 45.03 3.33
205 206 6.310224 GTGCAAAACAGTCTATTTTGTGTTGT 59.690 34.615 15.82 0.00 45.03 3.32
206 207 6.529829 TGCAAAACAGTCTATTTTGTGTTGTC 59.470 34.615 15.82 1.58 45.03 3.18
207 208 6.751888 GCAAAACAGTCTATTTTGTGTTGTCT 59.248 34.615 15.82 0.00 45.03 3.41
208 209 7.253750 GCAAAACAGTCTATTTTGTGTTGTCTG 60.254 37.037 15.82 0.00 45.03 3.51
209 210 7.624360 AAACAGTCTATTTTGTGTTGTCTGA 57.376 32.000 0.00 0.00 33.45 3.27
210 211 7.624360 AACAGTCTATTTTGTGTTGTCTGAA 57.376 32.000 0.00 0.00 31.94 3.02
211 212 7.624360 ACAGTCTATTTTGTGTTGTCTGAAA 57.376 32.000 0.00 0.00 0.00 2.69
212 213 7.472543 ACAGTCTATTTTGTGTTGTCTGAAAC 58.527 34.615 0.00 0.00 0.00 2.78
213 214 6.628856 CAGTCTATTTTGTGTTGTCTGAAACG 59.371 38.462 0.00 0.00 32.47 3.60
214 215 6.537301 AGTCTATTTTGTGTTGTCTGAAACGA 59.463 34.615 0.00 0.00 32.47 3.85
215 216 6.627671 GTCTATTTTGTGTTGTCTGAAACGAC 59.372 38.462 0.00 0.00 41.96 4.34
216 217 5.560966 ATTTTGTGTTGTCTGAAACGACT 57.439 34.783 0.00 0.00 42.09 4.18
217 218 5.365403 TTTTGTGTTGTCTGAAACGACTT 57.635 34.783 0.00 0.00 42.09 3.01
218 219 6.483385 TTTTGTGTTGTCTGAAACGACTTA 57.517 33.333 0.00 0.00 42.09 2.24
219 220 5.459110 TTGTGTTGTCTGAAACGACTTAC 57.541 39.130 0.00 0.00 42.09 2.34
220 221 4.496360 TGTGTTGTCTGAAACGACTTACA 58.504 39.130 0.00 0.00 42.09 2.41
221 222 4.930405 TGTGTTGTCTGAAACGACTTACAA 59.070 37.500 0.00 0.00 42.09 2.41
222 223 5.408909 TGTGTTGTCTGAAACGACTTACAAA 59.591 36.000 0.00 0.00 42.09 2.83
223 224 6.073167 TGTGTTGTCTGAAACGACTTACAAAA 60.073 34.615 0.00 0.00 42.09 2.44
224 225 6.797995 GTGTTGTCTGAAACGACTTACAAAAA 59.202 34.615 0.00 0.00 42.09 1.94
225 226 7.483691 GTGTTGTCTGAAACGACTTACAAAAAT 59.516 33.333 0.00 0.00 42.09 1.82
226 227 7.483375 TGTTGTCTGAAACGACTTACAAAAATG 59.517 33.333 0.00 0.00 42.09 2.32
227 228 7.310072 TGTCTGAAACGACTTACAAAAATGA 57.690 32.000 0.00 0.00 35.00 2.57
228 229 7.753659 TGTCTGAAACGACTTACAAAAATGAA 58.246 30.769 0.00 0.00 35.00 2.57
229 230 7.694784 TGTCTGAAACGACTTACAAAAATGAAC 59.305 33.333 0.00 0.00 35.00 3.18
230 231 7.694784 GTCTGAAACGACTTACAAAAATGAACA 59.305 33.333 0.00 0.00 0.00 3.18
231 232 7.908082 TCTGAAACGACTTACAAAAATGAACAG 59.092 33.333 0.00 0.00 0.00 3.16
232 233 7.753659 TGAAACGACTTACAAAAATGAACAGA 58.246 30.769 0.00 0.00 0.00 3.41
233 234 7.908082 TGAAACGACTTACAAAAATGAACAGAG 59.092 33.333 0.00 0.00 0.00 3.35
234 235 6.300354 ACGACTTACAAAAATGAACAGAGG 57.700 37.500 0.00 0.00 0.00 3.69
235 236 5.238650 ACGACTTACAAAAATGAACAGAGGG 59.761 40.000 0.00 0.00 0.00 4.30
236 237 5.468746 CGACTTACAAAAATGAACAGAGGGA 59.531 40.000 0.00 0.00 0.00 4.20
237 238 6.347725 CGACTTACAAAAATGAACAGAGGGAG 60.348 42.308 0.00 0.00 0.00 4.30
238 239 6.365520 ACTTACAAAAATGAACAGAGGGAGT 58.634 36.000 0.00 0.00 0.00 3.85
239 240 7.514721 ACTTACAAAAATGAACAGAGGGAGTA 58.485 34.615 0.00 0.00 0.00 2.59
240 241 7.661847 ACTTACAAAAATGAACAGAGGGAGTAG 59.338 37.037 0.00 0.00 0.00 2.57
241 242 5.941788 ACAAAAATGAACAGAGGGAGTAGT 58.058 37.500 0.00 0.00 0.00 2.73
242 243 7.074653 ACAAAAATGAACAGAGGGAGTAGTA 57.925 36.000 0.00 0.00 0.00 1.82
243 244 7.162082 ACAAAAATGAACAGAGGGAGTAGTAG 58.838 38.462 0.00 0.00 0.00 2.57
244 245 7.016268 ACAAAAATGAACAGAGGGAGTAGTAGA 59.984 37.037 0.00 0.00 0.00 2.59
275 276 1.031571 TGTGGCCAATTGCGAGGATC 61.032 55.000 7.24 0.00 42.61 3.36
288 289 2.494059 CGAGGATCCGTGCCATAAATT 58.506 47.619 5.98 0.00 0.00 1.82
310 311 2.432510 TGGAAACCAAAGCAATTTCGGT 59.567 40.909 0.00 0.00 33.91 4.69
312 313 4.282195 TGGAAACCAAAGCAATTTCGGTAT 59.718 37.500 0.00 0.00 33.91 2.73
314 315 5.120053 GGAAACCAAAGCAATTTCGGTATTG 59.880 40.000 6.17 6.17 38.31 1.90
315 316 5.461032 AACCAAAGCAATTTCGGTATTGA 57.539 34.783 12.61 0.00 37.65 2.57
316 317 5.461032 ACCAAAGCAATTTCGGTATTGAA 57.539 34.783 12.61 0.00 37.65 2.69
317 318 5.227152 ACCAAAGCAATTTCGGTATTGAAC 58.773 37.500 12.61 0.00 37.65 3.18
318 319 5.010617 ACCAAAGCAATTTCGGTATTGAACT 59.989 36.000 12.61 1.50 37.65 3.01
319 320 5.925969 CCAAAGCAATTTCGGTATTGAACTT 59.074 36.000 12.61 6.21 37.65 2.66
320 321 6.128849 CCAAAGCAATTTCGGTATTGAACTTG 60.129 38.462 12.61 10.89 39.88 3.16
321 322 5.957842 AGCAATTTCGGTATTGAACTTGA 57.042 34.783 12.61 0.00 39.50 3.02
324 352 8.225603 AGCAATTTCGGTATTGAACTTGATAT 57.774 30.769 12.61 0.00 39.50 1.63
345 373 8.642432 TGATATTAGTAGTACTTGAAGCATGCT 58.358 33.333 16.30 16.30 0.00 3.79
376 404 3.423154 CCGCTTTGTCAGACGCCC 61.423 66.667 0.00 0.00 0.00 6.13
377 405 2.357517 CGCTTTGTCAGACGCCCT 60.358 61.111 0.00 0.00 0.00 5.19
378 406 2.383527 CGCTTTGTCAGACGCCCTC 61.384 63.158 0.00 0.00 0.00 4.30
379 407 1.004440 GCTTTGTCAGACGCCCTCT 60.004 57.895 0.00 0.00 0.00 3.69
380 408 1.016653 GCTTTGTCAGACGCCCTCTC 61.017 60.000 0.00 0.00 0.00 3.20
381 409 0.390472 CTTTGTCAGACGCCCTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
382 410 1.827399 TTTGTCAGACGCCCTCTCCC 61.827 60.000 0.00 0.00 0.00 4.30
383 411 2.363147 GTCAGACGCCCTCTCCCT 60.363 66.667 0.00 0.00 0.00 4.20
384 412 2.043852 TCAGACGCCCTCTCCCTC 60.044 66.667 0.00 0.00 0.00 4.30
385 413 2.043450 CAGACGCCCTCTCCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
386 414 2.124693 CAGACGCCCTCTCCCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
387 415 2.277404 GACGCCCTCTCCCTCTCT 59.723 66.667 0.00 0.00 0.00 3.10
421 449 2.224066 CGGCCCCGATCCATATCTTATC 60.224 54.545 0.00 0.00 42.83 1.75
422 450 3.041946 GGCCCCGATCCATATCTTATCT 58.958 50.000 0.00 0.00 0.00 1.98
424 452 4.654262 GGCCCCGATCCATATCTTATCTTA 59.346 45.833 0.00 0.00 0.00 2.10
425 453 5.221541 GGCCCCGATCCATATCTTATCTTAG 60.222 48.000 0.00 0.00 0.00 2.18
426 454 5.598830 GCCCCGATCCATATCTTATCTTAGA 59.401 44.000 0.00 0.00 0.00 2.10
482 523 4.130286 GAGTAGCAAGCACTCCATAACT 57.870 45.455 11.20 0.00 37.11 2.24
484 525 5.661458 GAGTAGCAAGCACTCCATAACTTA 58.339 41.667 11.20 0.00 37.11 2.24
527 579 2.685017 AGACATCGCCCTCTGCCA 60.685 61.111 0.00 0.00 36.24 4.92
536 588 3.419858 CCTCTGCCACAAGGGGAT 58.580 61.111 0.00 0.00 40.70 3.85
540 606 1.002069 TCTGCCACAAGGGGATCATT 58.998 50.000 0.00 0.00 35.87 2.57
543 609 1.076841 TGCCACAAGGGGATCATTTCA 59.923 47.619 0.00 0.00 37.04 2.69
546 612 1.753073 CACAAGGGGATCATTTCAGCC 59.247 52.381 0.00 0.00 0.00 4.85
576 642 3.559024 CTGCAAGTGCGTGAGAGG 58.441 61.111 0.00 0.00 45.83 3.69
582 648 1.254284 AAGTGCGTGAGAGGGAGAGG 61.254 60.000 0.00 0.00 0.00 3.69
584 650 2.043852 GCGTGAGAGGGAGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
585 651 2.419739 GCGTGAGAGGGAGAGGGAC 61.420 68.421 0.00 0.00 0.00 4.46
586 652 1.000771 CGTGAGAGGGAGAGGGACA 60.001 63.158 0.00 0.00 0.00 4.02
589 655 1.063266 GTGAGAGGGAGAGGGACAGAT 60.063 57.143 0.00 0.00 0.00 2.90
590 656 1.216678 TGAGAGGGAGAGGGACAGATC 59.783 57.143 0.00 0.00 0.00 2.75
591 657 1.499007 GAGAGGGAGAGGGACAGATCT 59.501 57.143 0.00 0.00 0.00 2.75
642 723 2.859165 ATTTTTGACAGGGCGAGAGA 57.141 45.000 0.00 0.00 0.00 3.10
644 725 0.321671 TTTTGACAGGGCGAGAGAGG 59.678 55.000 0.00 0.00 0.00 3.69
646 727 2.043852 GACAGGGCGAGAGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
650 731 2.520741 GGGCGAGAGAGGGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
673 756 4.166144 GGAGATTAGGTGGGATGAAGGAAA 59.834 45.833 0.00 0.00 0.00 3.13
674 757 5.372373 GAGATTAGGTGGGATGAAGGAAAG 58.628 45.833 0.00 0.00 0.00 2.62
675 758 3.366052 TTAGGTGGGATGAAGGAAAGC 57.634 47.619 0.00 0.00 0.00 3.51
676 759 0.035056 AGGTGGGATGAAGGAAAGCG 60.035 55.000 0.00 0.00 0.00 4.68
750 843 1.267806 ACAAATCTGCTGTCCTTTGCG 59.732 47.619 12.30 0.00 33.03 4.85
897 1013 5.070001 TCCAAAAGGAAATATATCAGGCCG 58.930 41.667 0.00 0.00 0.00 6.13
898 1014 4.218417 CCAAAAGGAAATATATCAGGCCGG 59.782 45.833 0.00 0.00 0.00 6.13
899 1015 3.721087 AAGGAAATATATCAGGCCGGG 57.279 47.619 2.18 0.00 0.00 5.73
900 1016 1.916181 AGGAAATATATCAGGCCGGGG 59.084 52.381 2.18 0.00 0.00 5.73
904 1031 0.716591 ATATATCAGGCCGGGGGAGA 59.283 55.000 2.18 0.00 0.00 3.71
1042 1183 2.140792 CCATCGAATCCGGGTCCCT 61.141 63.158 6.29 0.00 36.24 4.20
1043 1184 1.367840 CATCGAATCCGGGTCCCTC 59.632 63.158 6.29 0.00 36.24 4.30
1044 1185 1.837499 ATCGAATCCGGGTCCCTCC 60.837 63.158 6.29 0.00 36.24 4.30
1093 1234 2.651232 CGTCTCCGCCGTCGAATC 60.651 66.667 0.00 0.00 38.10 2.52
1094 1235 2.278661 GTCTCCGCCGTCGAATCC 60.279 66.667 0.00 0.00 38.10 3.01
1095 1236 3.884350 TCTCCGCCGTCGAATCCG 61.884 66.667 0.00 0.00 38.10 4.18
1102 1243 4.587189 CGTCGAATCCGCCCCCTC 62.587 72.222 0.00 0.00 35.37 4.30
1146 1305 2.665603 GCCGCTTCTTCCTCCTGT 59.334 61.111 0.00 0.00 0.00 4.00
1167 1326 1.407656 TTCTTGCGTGGTGGGAGTCT 61.408 55.000 0.00 0.00 0.00 3.24
1172 1331 3.330720 GTGGTGGGAGTCTGGGGG 61.331 72.222 0.00 0.00 0.00 5.40
1280 1439 2.235898 GTGCCAGGAAGAATCTCTGAGT 59.764 50.000 4.32 0.00 0.00 3.41
1296 1455 3.082548 CTGAGTCCGAGGTAAAGTCTCA 58.917 50.000 0.00 0.00 0.00 3.27
1357 1517 2.094675 CATCTTTGCCGTCCATTTCCT 58.905 47.619 0.00 0.00 0.00 3.36
1375 1535 6.816616 TTTCCTGGGTCTTTAATGGTTTTT 57.183 33.333 0.00 0.00 0.00 1.94
1376 1536 6.413783 TTCCTGGGTCTTTAATGGTTTTTC 57.586 37.500 0.00 0.00 0.00 2.29
1379 1539 3.904965 TGGGTCTTTAATGGTTTTTCCCC 59.095 43.478 0.00 0.00 34.77 4.81
1380 1540 3.056393 GGGTCTTTAATGGTTTTTCCCCG 60.056 47.826 0.00 0.00 34.77 5.73
1394 1554 2.727544 CCCGTGCCTGTTTTGGTG 59.272 61.111 0.00 0.00 0.00 4.17
1411 1573 6.537453 TTTGGTGAAATCTTGTGGAGAAAA 57.463 33.333 0.00 0.00 38.06 2.29
1418 1580 1.071699 TCTTGTGGAGAAAACTCCCCG 59.928 52.381 12.78 0.90 42.69 5.73
1434 1596 1.156736 CCCGTTCTCGCAATTGAGTT 58.843 50.000 10.34 0.00 37.28 3.01
1435 1597 1.535462 CCCGTTCTCGCAATTGAGTTT 59.465 47.619 10.34 0.00 37.28 2.66
1449 1611 3.641437 TGAGTTTGCCTTTCGATTTGG 57.359 42.857 0.00 0.00 0.00 3.28
1470 1638 3.981416 GGTTCTTGTCTGAAATTTTCGGC 59.019 43.478 12.30 8.65 35.98 5.54
1514 1685 3.165058 TGAGCGATTACATCTGTCCAC 57.835 47.619 0.00 0.00 0.00 4.02
1564 1738 0.812811 TCTGCTGCCGCTGATGAATC 60.813 55.000 5.60 0.00 38.90 2.52
1623 1803 6.651975 AGTACTAGGATTTGGTAGAATCGG 57.348 41.667 0.00 0.00 36.99 4.18
1661 1845 1.341531 AGGGTTGACTTGTCTCGTCTG 59.658 52.381 2.35 0.00 32.70 3.51
1672 1856 5.635700 ACTTGTCTCGTCTGCTTTATTCTTC 59.364 40.000 0.00 0.00 0.00 2.87
1744 1929 7.049799 TCTCCTTTATTTCCCTTGTTTGTTG 57.950 36.000 0.00 0.00 0.00 3.33
1828 2033 2.034104 TCTGCATGATCAGTTGGCTC 57.966 50.000 0.09 0.00 35.63 4.70
1876 2091 5.824624 CCACCATCATTGCTCACTTTATACT 59.175 40.000 0.00 0.00 0.00 2.12
1877 2092 6.992123 CCACCATCATTGCTCACTTTATACTA 59.008 38.462 0.00 0.00 0.00 1.82
1878 2093 7.041780 CCACCATCATTGCTCACTTTATACTAC 60.042 40.741 0.00 0.00 0.00 2.73
1993 2211 1.305201 GACGCTGGTTCTGGACAAAA 58.695 50.000 0.00 0.00 0.00 2.44
2026 2248 7.607607 TCATTTCTTCTTCTGCTGCTTTATGTA 59.392 33.333 0.00 0.00 0.00 2.29
2066 2291 5.598005 ACCTTTGATTGAATGTCCTGTTGAA 59.402 36.000 0.00 0.00 0.00 2.69
2081 2306 1.135859 GTTGAACAGATTGGAGCAGCG 60.136 52.381 0.00 0.00 0.00 5.18
2087 2312 1.153086 GATTGGAGCAGCGATGGGT 60.153 57.895 1.46 0.00 0.00 4.51
2102 2327 1.603739 GGGTGCAAAGGTGGAGGTC 60.604 63.158 0.00 0.00 0.00 3.85
2116 2341 1.404843 GAGGTCGAGGGCTACAATCT 58.595 55.000 0.00 0.00 0.00 2.40
2205 2430 0.452784 GTCAAATGGCTTCGTGACGC 60.453 55.000 0.00 0.00 31.84 5.19
2207 2432 2.332654 AAATGGCTTCGTGACGCCC 61.333 57.895 14.02 0.85 45.71 6.13
2252 2477 4.081697 TGTGATAAAGAGATGTTCAGGCGA 60.082 41.667 0.00 0.00 0.00 5.54
2301 2530 2.092429 AGACAGCAGGTTTGTTTCCTCA 60.092 45.455 0.00 0.00 32.37 3.86
2329 2558 1.157257 AACGTCGATGCAGCAACACA 61.157 50.000 4.06 0.00 0.00 3.72
2330 2559 1.157257 ACGTCGATGCAGCAACACAA 61.157 50.000 4.06 0.00 0.00 3.33
2331 2560 0.722469 CGTCGATGCAGCAACACAAC 60.722 55.000 1.53 0.00 0.00 3.32
2332 2561 0.307453 GTCGATGCAGCAACACAACA 59.693 50.000 1.53 0.00 0.00 3.33
2333 2562 0.307453 TCGATGCAGCAACACAACAC 59.693 50.000 1.53 0.00 0.00 3.32
2334 2563 0.661187 CGATGCAGCAACACAACACC 60.661 55.000 1.53 0.00 0.00 4.16
2350 2581 6.772716 ACACAACACCTAGATGATTTCAGTTT 59.227 34.615 0.00 0.00 0.00 2.66
2390 2627 5.359576 TGTATTTCTTGGCTTGACAACAACT 59.640 36.000 0.00 0.00 32.27 3.16
2518 2755 2.904697 TGCATCGCAGAGAGATTCAT 57.095 45.000 0.00 0.00 43.63 2.57
2532 2769 6.482641 AGAGAGATTCATCATCACAAATTCCG 59.517 38.462 0.00 0.00 33.75 4.30
2653 2890 3.523157 TGGATTTCCCTCAAGTGATGCTA 59.477 43.478 0.00 0.00 35.38 3.49
2658 2895 3.942829 TCCCTCAAGTGATGCTACTTTG 58.057 45.455 0.00 0.00 38.78 2.77
2828 3065 3.569200 AAGGCTTGGGGAGGTTCGC 62.569 63.158 0.00 0.00 0.00 4.70
2889 3132 0.965439 TTGTAGGCCACAATGTTGCC 59.035 50.000 19.49 19.49 42.29 4.52
2922 3165 4.249638 GCCAATTCTGGGCCCATATATA 57.750 45.455 28.82 9.49 45.87 0.86
3054 3297 5.813080 ATTCCAAGGACAAGCGTATTAAC 57.187 39.130 0.00 0.00 0.00 2.01
3302 3546 2.014010 TTGAAAGAAATGGGGCTGCT 57.986 45.000 0.00 0.00 0.00 4.24
3312 3556 0.616371 TGGGGCTGCTACGTAACATT 59.384 50.000 0.00 0.00 0.00 2.71
3336 3580 0.831307 GTAGGCCTGTAGGGTGAAGG 59.169 60.000 17.99 0.00 37.43 3.46
3343 3587 3.356290 CCTGTAGGGTGAAGGGAATTTG 58.644 50.000 0.00 0.00 0.00 2.32
3344 3588 3.245264 CCTGTAGGGTGAAGGGAATTTGT 60.245 47.826 0.00 0.00 0.00 2.83
3354 3598 8.143835 GGGTGAAGGGAATTTGTAATATTCATG 58.856 37.037 0.00 0.00 34.43 3.07
3424 3668 9.571810 TGCTAATTTTATTTGTTACATGCAGAG 57.428 29.630 0.00 0.00 0.00 3.35
3433 3677 5.801350 TGTTACATGCAGAGCTACATTTC 57.199 39.130 0.00 0.00 0.00 2.17
3435 3679 2.283298 ACATGCAGAGCTACATTTCCG 58.717 47.619 0.00 0.00 0.00 4.30
3450 3694 6.119144 ACATTTCCGTAACTATGCATGTTC 57.881 37.500 10.16 5.68 0.00 3.18
3454 3698 3.129813 TCCGTAACTATGCATGTTCGACT 59.870 43.478 10.16 0.00 0.00 4.18
3466 3710 4.759782 CATGTTCGACTATCAGGTTTCCT 58.240 43.478 0.00 0.00 0.00 3.36
3483 3727 7.712205 CAGGTTTCCTGTTGATTCTTTTCAATT 59.288 33.333 7.55 0.00 45.82 2.32
3484 3728 7.928167 AGGTTTCCTGTTGATTCTTTTCAATTC 59.072 33.333 0.00 0.00 37.88 2.17
3489 3733 7.175641 TCCTGTTGATTCTTTTCAATTCTCTCC 59.824 37.037 0.00 0.00 37.88 3.71
3492 3736 8.917088 TGTTGATTCTTTTCAATTCTCTCCTTT 58.083 29.630 0.00 0.00 37.88 3.11
3494 3738 9.971922 TTGATTCTTTTCAATTCTCTCCTTTTC 57.028 29.630 0.00 0.00 30.82 2.29
3513 3757 4.935352 TTCTTTTTGGTGCTGCACTTAT 57.065 36.364 29.54 0.00 34.40 1.73
3520 3764 1.669795 GGTGCTGCACTTATTTGTGGC 60.670 52.381 29.54 7.58 38.31 5.01
3555 3830 2.887152 CCCTTTCATAGCTACCAATGGC 59.113 50.000 0.00 0.00 0.00 4.40
3575 3850 4.131596 GGCTAAGTGTTGTGTCCTGTAAA 58.868 43.478 0.00 0.00 0.00 2.01
3581 3856 1.937899 GTTGTGTCCTGTAAAGCGTGT 59.062 47.619 0.00 0.00 0.00 4.49
3582 3857 1.577468 TGTGTCCTGTAAAGCGTGTG 58.423 50.000 0.00 0.00 0.00 3.82
3584 3859 1.525619 GTGTCCTGTAAAGCGTGTGAC 59.474 52.381 0.00 0.00 0.00 3.67
3585 3860 1.137282 TGTCCTGTAAAGCGTGTGACA 59.863 47.619 0.00 0.00 0.00 3.58
3586 3861 2.224185 TGTCCTGTAAAGCGTGTGACAT 60.224 45.455 0.00 0.00 0.00 3.06
3707 3982 7.990917 ACTGATGTGTGTGTTATGTGTTTAAA 58.009 30.769 0.00 0.00 0.00 1.52
3708 3983 8.462811 ACTGATGTGTGTGTTATGTGTTTAAAA 58.537 29.630 0.00 0.00 0.00 1.52
3845 4120 8.477419 TTCTATTTTGTTCCAATTCTTCAGGT 57.523 30.769 0.00 0.00 0.00 4.00
3959 4234 7.326063 GCAAGCAGTAACAAGTTTATTTACCAG 59.674 37.037 0.00 0.00 0.00 4.00
3962 4237 6.581166 GCAGTAACAAGTTTATTTACCAGTGC 59.419 38.462 0.00 0.00 0.00 4.40
3996 4271 2.107552 TCCGGATGGTTTTCAGGAAGTT 59.892 45.455 0.00 0.00 37.10 2.66
4115 4390 2.177594 AACCTTCTGCTGCCTCTCGG 62.178 60.000 0.00 0.00 0.00 4.63
4116 4391 2.654079 CCTTCTGCTGCCTCTCGGT 61.654 63.158 0.00 0.00 0.00 4.69
4178 4453 1.667724 GCTGATGTCCAGTCATTTCCG 59.332 52.381 0.00 0.00 44.71 4.30
4214 4489 6.110543 TCTTCAACTGTCAATTCATATGCG 57.889 37.500 0.00 0.00 0.00 4.73
4222 4497 4.201841 TGTCAATTCATATGCGTGCTTCAG 60.202 41.667 0.00 0.00 0.00 3.02
4338 4616 0.677731 ATCACAACCACGGCATCAGG 60.678 55.000 0.00 0.00 0.00 3.86
4372 4650 3.129287 AGTGACTTGGAGCAAAACAACAG 59.871 43.478 0.00 0.00 0.00 3.16
4375 4653 0.463620 TTGGAGCAAAACAACAGGCC 59.536 50.000 0.00 0.00 0.00 5.19
4401 4679 0.038310 TGGACACCCAACACAACACA 59.962 50.000 0.00 0.00 40.09 3.72
4403 4681 0.100503 GACACCCAACACAACACAGC 59.899 55.000 0.00 0.00 0.00 4.40
4426 4704 5.348986 CCATGAAGATCCTGATTTTGCAAG 58.651 41.667 0.00 0.00 0.00 4.01
4430 4708 3.771216 AGATCCTGATTTTGCAAGTGGT 58.229 40.909 0.00 0.00 0.00 4.16
4507 4785 1.351017 TGTTGTAGAGCAAGAAGGGGG 59.649 52.381 0.00 0.00 37.83 5.40
4508 4786 1.628846 GTTGTAGAGCAAGAAGGGGGA 59.371 52.381 0.00 0.00 37.83 4.81
4520 4798 0.120377 AAGGGGGATGTGTAGGTGGA 59.880 55.000 0.00 0.00 0.00 4.02
4598 4876 1.202110 GCTTCATGTGCTGATTCCACG 60.202 52.381 6.28 0.00 36.01 4.94
4749 5030 3.780850 AGGTTGTGGAACTAAGGATAGGG 59.219 47.826 0.00 0.00 38.04 3.53
4756 5037 3.433740 GGAACTAAGGATAGGGCTTGTGG 60.434 52.174 0.00 0.00 33.15 4.17
4760 5041 0.034089 AGGATAGGGCTTGTGGCAAC 60.034 55.000 0.00 0.00 44.01 4.17
4810 5091 6.012658 TGTTGCATGTTTACCTCTTTCATC 57.987 37.500 0.00 0.00 0.00 2.92
4976 5257 5.473162 CCATGTGACATCCTTACAGAACAAA 59.527 40.000 0.00 0.00 0.00 2.83
5110 5391 3.131933 ACTGCAGAGACACCTGATGATAC 59.868 47.826 23.35 0.00 36.29 2.24
5135 5416 1.963338 GTGGTTTGCAGAGCTCGCT 60.963 57.895 24.04 1.13 0.00 4.93
5146 5427 3.847542 CAGAGCTCGCTATATCAAGCAT 58.152 45.455 8.37 0.00 42.91 3.79
5260 5541 3.407424 TGAAGACATCAAGACTGGTGG 57.593 47.619 0.00 0.00 38.06 4.61
5298 5579 2.819552 GCGCCCGCGATAACAACAT 61.820 57.895 14.24 0.00 42.83 2.71
5417 5698 1.371145 GCCTAGCATCTCGTCGCTC 60.371 63.158 0.00 0.00 39.70 5.03
5444 5725 3.316283 GCCTGAGATCATCGAAGACATC 58.684 50.000 0.00 0.00 42.51 3.06
5474 5755 2.432628 GGGCTGGTTCAGACGACG 60.433 66.667 0.00 0.00 41.11 5.12
5577 5858 1.551452 AGAAGAAGAGGTCCAGGTCG 58.449 55.000 0.00 0.00 0.00 4.79
5971 6254 5.094387 TGAAGGGGTATAGATGAGGATTCC 58.906 45.833 0.00 0.00 0.00 3.01
6056 6351 1.432270 GGGTTAGCTCGCTCATGTGC 61.432 60.000 9.72 9.72 0.00 4.57
6109 6404 2.159476 CGCTGATGAGTTTGATGGGTTG 60.159 50.000 0.00 0.00 0.00 3.77
6121 6416 2.610859 GGGTTGGGAGGCTGGAGA 60.611 66.667 0.00 0.00 0.00 3.71
6137 6432 0.465097 GAGATGATGTGGTGGGGCTG 60.465 60.000 0.00 0.00 0.00 4.85
6138 6433 2.043652 ATGATGTGGTGGGGCTGC 60.044 61.111 0.00 0.00 0.00 5.25
6139 6434 2.842188 GATGATGTGGTGGGGCTGCA 62.842 60.000 0.50 0.00 0.00 4.41
6140 6435 3.064324 GATGTGGTGGGGCTGCAC 61.064 66.667 0.50 0.00 0.00 4.57
6141 6436 4.684134 ATGTGGTGGGGCTGCACC 62.684 66.667 15.65 15.65 41.64 5.01
6200 6495 3.807622 ACACGGCCGATATCAGTATTTTG 59.192 43.478 35.90 17.19 0.00 2.44
6213 6508 4.627035 TCAGTATTTTGATGACTCGTGCTG 59.373 41.667 0.00 0.00 0.00 4.41
6214 6509 2.907910 ATTTTGATGACTCGTGCTGC 57.092 45.000 0.00 0.00 0.00 5.25
6215 6510 0.874390 TTTTGATGACTCGTGCTGCC 59.126 50.000 0.00 0.00 0.00 4.85
6216 6511 0.035317 TTTGATGACTCGTGCTGCCT 59.965 50.000 0.00 0.00 0.00 4.75
6217 6512 0.671472 TTGATGACTCGTGCTGCCTG 60.671 55.000 0.00 0.00 0.00 4.85
6322 6618 3.512033 TGTGCTTTTAAACACCACCAC 57.488 42.857 6.51 0.00 35.90 4.16
6323 6619 2.166664 TGTGCTTTTAAACACCACCACC 59.833 45.455 6.51 0.00 35.90 4.61
6324 6620 2.166664 GTGCTTTTAAACACCACCACCA 59.833 45.455 0.00 0.00 0.00 4.17
6363 6659 6.036735 GCATCCGCTAACTCAATACAAGTAAA 59.963 38.462 0.00 0.00 34.30 2.01
6365 6661 8.612619 CATCCGCTAACTCAATACAAGTAAATT 58.387 33.333 0.00 0.00 0.00 1.82
6366 6662 9.826574 ATCCGCTAACTCAATACAAGTAAATTA 57.173 29.630 0.00 0.00 0.00 1.40
6390 7154 9.929180 TTAGTTATTACAGTGGCAGATGATATC 57.071 33.333 6.64 0.00 0.00 1.63
6405 7169 8.119226 GCAGATGATATCGCCACTATTTATTTC 58.881 37.037 0.00 0.00 0.00 2.17
6411 7175 5.493133 TCGCCACTATTTATTTCGCATTT 57.507 34.783 0.00 0.00 0.00 2.32
6414 7178 7.644490 TCGCCACTATTTATTTCGCATTTATT 58.356 30.769 0.00 0.00 0.00 1.40
6415 7179 8.132362 TCGCCACTATTTATTTCGCATTTATTT 58.868 29.630 0.00 0.00 0.00 1.40
6416 7180 8.417176 CGCCACTATTTATTTCGCATTTATTTC 58.583 33.333 0.00 0.00 0.00 2.17
6437 7202 2.916702 TGCGATGAGATATTGCCACT 57.083 45.000 0.00 0.00 0.00 4.00
6451 7216 9.167311 AGATATTGCCACTTTTAGTTTGAGTAG 57.833 33.333 0.00 0.00 0.00 2.57
6480 7249 4.831741 GAGTATCTTTTGTGCTCTCACG 57.168 45.455 0.00 0.00 46.01 4.35
6483 7252 1.865865 TCTTTTGTGCTCTCACGTCC 58.134 50.000 0.00 0.00 46.01 4.79
6485 7254 0.179234 TTTTGTGCTCTCACGTCCCA 59.821 50.000 0.00 0.00 46.01 4.37
6486 7255 0.179234 TTTGTGCTCTCACGTCCCAA 59.821 50.000 0.00 0.00 46.01 4.12
6503 7273 0.810648 CAATGTCCCATGTCCCAACG 59.189 55.000 0.00 0.00 0.00 4.10
6504 7274 0.323360 AATGTCCCATGTCCCAACGG 60.323 55.000 0.00 0.00 0.00 4.44
6547 7317 4.408821 ATGGTGGTGTGCGCGGAT 62.409 61.111 8.83 0.00 0.00 4.18
6735 7721 5.347093 GGATATCAATACAGACGCAGACATG 59.653 44.000 4.83 0.00 0.00 3.21
6775 7764 1.077123 CATGACTCAGACACTGCTGC 58.923 55.000 0.00 0.00 35.86 5.25
6839 7833 0.840288 TTCCTGCCTGCCCTCTGTTA 60.840 55.000 0.00 0.00 0.00 2.41
6877 7875 1.523032 GTGGCCATACCCACGTAGC 60.523 63.158 9.72 0.00 45.13 3.58
6902 7910 2.233654 GCTGATACTGCGCTCACCG 61.234 63.158 9.73 0.00 40.75 4.94
6919 7927 1.812922 CGATGCTTTCTGCTCGGCT 60.813 57.895 0.00 0.00 43.37 5.52
6921 7929 0.098376 GATGCTTTCTGCTCGGCTTG 59.902 55.000 0.00 0.00 43.37 4.01
6922 7930 1.310933 ATGCTTTCTGCTCGGCTTGG 61.311 55.000 0.00 0.00 43.37 3.61
6923 7931 2.873288 CTTTCTGCTCGGCTTGGC 59.127 61.111 0.00 0.00 0.00 4.52
6924 7932 2.672996 TTTCTGCTCGGCTTGGCC 60.673 61.111 0.00 0.00 46.75 5.36
6976 7986 2.280797 TGTGCCCGTGTCTGCTTC 60.281 61.111 0.00 0.00 0.00 3.86
6977 7987 3.414700 GTGCCCGTGTCTGCTTCG 61.415 66.667 0.00 0.00 0.00 3.79
7021 8037 1.603842 CATGGCCTCCTGCACTGTA 59.396 57.895 3.32 0.00 43.89 2.74
7025 8041 1.123928 GGCCTCCTGCACTGTATACT 58.876 55.000 4.17 0.00 43.89 2.12
7030 8046 4.797604 GCCTCCTGCACTGTATACTGTATG 60.798 50.000 14.25 5.71 40.77 2.39
7031 8047 4.584743 CCTCCTGCACTGTATACTGTATGA 59.415 45.833 14.25 8.27 0.00 2.15
7032 8048 5.278709 CCTCCTGCACTGTATACTGTATGAG 60.279 48.000 14.25 15.04 0.00 2.90
7035 8051 6.486993 TCCTGCACTGTATACTGTATGAGTAG 59.513 42.308 14.25 10.70 40.63 2.57
7037 8053 6.362248 TGCACTGTATACTGTATGAGTAGGA 58.638 40.000 14.25 0.63 40.63 2.94
7038 8054 6.262496 TGCACTGTATACTGTATGAGTAGGAC 59.738 42.308 14.25 0.00 40.63 3.85
7039 8055 6.566187 GCACTGTATACTGTATGAGTAGGACG 60.566 46.154 14.25 0.79 40.63 4.79
7048 8064 1.171308 TGAGTAGGACGCTGTACACC 58.829 55.000 0.00 0.00 0.00 4.16
7051 8067 1.303561 TAGGACGCTGTACACCGGT 60.304 57.895 14.66 0.00 0.00 5.28
7052 8068 0.035534 TAGGACGCTGTACACCGGTA 60.036 55.000 6.87 0.00 0.00 4.02
7067 8085 4.243270 CACCGGTAGTAAAAACAGAGGAG 58.757 47.826 6.87 0.00 0.00 3.69
7073 8091 6.477033 CGGTAGTAAAAACAGAGGAGATGATG 59.523 42.308 0.00 0.00 0.00 3.07
7074 8092 6.258947 GGTAGTAAAAACAGAGGAGATGATGC 59.741 42.308 0.00 0.00 0.00 3.91
7075 8093 5.189180 AGTAAAAACAGAGGAGATGATGCC 58.811 41.667 0.00 0.00 0.00 4.40
7076 8094 4.313020 AAAAACAGAGGAGATGATGCCT 57.687 40.909 0.00 0.00 37.18 4.75
7077 8095 5.441718 AAAAACAGAGGAGATGATGCCTA 57.558 39.130 0.00 0.00 33.84 3.93
7078 8096 5.643421 AAAACAGAGGAGATGATGCCTAT 57.357 39.130 0.00 0.00 33.84 2.57
7079 8097 4.888326 AACAGAGGAGATGATGCCTATC 57.112 45.455 0.00 0.00 33.84 2.08
7080 8098 3.854437 ACAGAGGAGATGATGCCTATCA 58.146 45.455 0.00 0.00 46.67 2.15
7081 8099 3.833650 ACAGAGGAGATGATGCCTATCAG 59.166 47.826 0.00 0.00 45.89 2.90
7086 8104 2.739885 GATGATGCCTATCAGCGTCT 57.260 50.000 7.21 0.00 45.89 4.18
7087 8105 3.857549 GATGATGCCTATCAGCGTCTA 57.142 47.619 7.21 0.00 45.89 2.59
7088 8106 3.768406 GATGATGCCTATCAGCGTCTAG 58.232 50.000 7.21 0.00 45.89 2.43
7089 8107 2.587522 TGATGCCTATCAGCGTCTAGT 58.412 47.619 7.21 0.00 46.81 2.57
7090 8108 3.751518 TGATGCCTATCAGCGTCTAGTA 58.248 45.455 7.21 0.00 46.81 1.82
7091 8109 4.336280 TGATGCCTATCAGCGTCTAGTAT 58.664 43.478 7.21 0.00 46.81 2.12
7092 8110 4.156739 TGATGCCTATCAGCGTCTAGTATG 59.843 45.833 7.21 0.00 46.81 2.39
7093 8111 2.820197 TGCCTATCAGCGTCTAGTATGG 59.180 50.000 0.00 0.00 34.65 2.74
7094 8112 2.164624 GCCTATCAGCGTCTAGTATGGG 59.835 54.545 0.00 0.00 0.00 4.00
7095 8113 2.755655 CCTATCAGCGTCTAGTATGGGG 59.244 54.545 0.00 0.00 0.00 4.96
7096 8114 2.383442 ATCAGCGTCTAGTATGGGGT 57.617 50.000 0.00 0.00 0.00 4.95
7097 8115 3.520691 ATCAGCGTCTAGTATGGGGTA 57.479 47.619 0.00 0.00 0.00 3.69
7098 8116 3.520691 TCAGCGTCTAGTATGGGGTAT 57.479 47.619 0.00 0.00 0.00 2.73
7099 8117 3.840991 TCAGCGTCTAGTATGGGGTATT 58.159 45.455 0.00 0.00 0.00 1.89
7100 8118 4.220724 TCAGCGTCTAGTATGGGGTATTT 58.779 43.478 0.00 0.00 0.00 1.40
7101 8119 4.652421 TCAGCGTCTAGTATGGGGTATTTT 59.348 41.667 0.00 0.00 0.00 1.82
7102 8120 4.750098 CAGCGTCTAGTATGGGGTATTTTG 59.250 45.833 0.00 0.00 0.00 2.44
7103 8121 4.407945 AGCGTCTAGTATGGGGTATTTTGT 59.592 41.667 0.00 0.00 0.00 2.83
7104 8122 5.599656 AGCGTCTAGTATGGGGTATTTTGTA 59.400 40.000 0.00 0.00 0.00 2.41
7105 8123 5.693555 GCGTCTAGTATGGGGTATTTTGTAC 59.306 44.000 0.00 0.00 0.00 2.90
7106 8124 5.916883 CGTCTAGTATGGGGTATTTTGTACG 59.083 44.000 0.00 0.00 0.00 3.67
7107 8125 5.693555 GTCTAGTATGGGGTATTTTGTACGC 59.306 44.000 0.00 0.00 0.00 4.42
7108 8126 3.460103 AGTATGGGGTATTTTGTACGCG 58.540 45.455 3.53 3.53 0.00 6.01
7109 8127 1.670791 ATGGGGTATTTTGTACGCGG 58.329 50.000 12.47 0.00 0.00 6.46
7110 8128 0.392729 TGGGGTATTTTGTACGCGGG 60.393 55.000 12.47 0.00 0.00 6.13
7111 8129 1.096967 GGGGTATTTTGTACGCGGGG 61.097 60.000 12.47 0.00 0.00 5.73
7112 8130 1.717791 GGGTATTTTGTACGCGGGGC 61.718 60.000 12.47 0.00 0.00 5.80
7113 8131 1.025647 GGTATTTTGTACGCGGGGCA 61.026 55.000 12.47 2.81 0.00 5.36
7114 8132 1.018910 GTATTTTGTACGCGGGGCAT 58.981 50.000 12.47 0.00 0.00 4.40
7115 8133 1.018148 TATTTTGTACGCGGGGCATG 58.982 50.000 12.47 0.00 0.00 4.06
7116 8134 0.963355 ATTTTGTACGCGGGGCATGT 60.963 50.000 12.47 0.00 0.00 3.21
7117 8135 1.173444 TTTTGTACGCGGGGCATGTT 61.173 50.000 12.47 0.00 0.00 2.71
7118 8136 1.579084 TTTGTACGCGGGGCATGTTC 61.579 55.000 12.47 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.941999 AAGGTGGTAGAGCGCGGTAC 61.942 60.000 12.41 6.75 0.00 3.34
16 17 1.679977 AAGGTGGTAGAGCGCGGTA 60.680 57.895 12.41 0.00 0.00 4.02
17 18 2.995574 AAGGTGGTAGAGCGCGGT 60.996 61.111 12.23 12.23 0.00 5.68
18 19 2.509336 CAAGGTGGTAGAGCGCGG 60.509 66.667 8.83 0.00 0.00 6.46
19 20 2.509336 CCAAGGTGGTAGAGCGCG 60.509 66.667 0.00 0.00 31.35 6.86
20 21 2.125106 CCCAAGGTGGTAGAGCGC 60.125 66.667 0.00 0.00 35.17 5.92
21 22 2.125106 GCCCAAGGTGGTAGAGCG 60.125 66.667 0.00 0.00 35.17 5.03
22 23 2.125106 CGCCCAAGGTGGTAGAGC 60.125 66.667 0.00 0.00 35.17 4.09
23 24 2.125106 GCGCCCAAGGTGGTAGAG 60.125 66.667 0.00 0.00 35.17 2.43
24 25 3.712907 GGCGCCCAAGGTGGTAGA 61.713 66.667 18.11 0.00 35.17 2.59
25 26 4.796495 GGGCGCCCAAGGTGGTAG 62.796 72.222 40.73 0.00 35.17 3.18
34 35 4.992740 AATTGCTGTGGGCGCCCA 62.993 61.111 44.23 44.23 45.43 5.36
35 36 4.133796 GAATTGCTGTGGGCGCCC 62.134 66.667 39.40 39.40 45.43 6.13
36 37 4.133796 GGAATTGCTGTGGGCGCC 62.134 66.667 21.18 21.18 45.43 6.53
37 38 3.056313 GAGGAATTGCTGTGGGCGC 62.056 63.158 3.35 0.00 45.43 6.53
38 39 2.409870 GGAGGAATTGCTGTGGGCG 61.410 63.158 3.35 0.00 45.43 6.13
39 40 2.054453 GGGAGGAATTGCTGTGGGC 61.054 63.158 3.35 0.00 42.22 5.36
40 41 0.394899 GAGGGAGGAATTGCTGTGGG 60.395 60.000 3.35 0.00 0.00 4.61
41 42 0.394899 GGAGGGAGGAATTGCTGTGG 60.395 60.000 3.35 0.00 0.00 4.17
42 43 0.394899 GGGAGGGAGGAATTGCTGTG 60.395 60.000 3.35 0.00 0.00 3.66
43 44 0.551131 AGGGAGGGAGGAATTGCTGT 60.551 55.000 3.35 0.00 0.00 4.40
44 45 0.182299 GAGGGAGGGAGGAATTGCTG 59.818 60.000 3.35 0.00 0.00 4.41
45 46 0.990818 GGAGGGAGGGAGGAATTGCT 60.991 60.000 0.00 0.00 0.00 3.91
46 47 1.534203 GGAGGGAGGGAGGAATTGC 59.466 63.158 0.00 0.00 0.00 3.56
47 48 1.356494 GGGGAGGGAGGGAGGAATTG 61.356 65.000 0.00 0.00 0.00 2.32
48 49 1.006227 GGGGAGGGAGGGAGGAATT 59.994 63.158 0.00 0.00 0.00 2.17
49 50 2.712746 GGGGAGGGAGGGAGGAAT 59.287 66.667 0.00 0.00 0.00 3.01
50 51 4.089757 CGGGGAGGGAGGGAGGAA 62.090 72.222 0.00 0.00 0.00 3.36
60 61 1.332144 TACGAACAATCCCGGGGAGG 61.332 60.000 23.50 17.83 34.05 4.30
61 62 0.104304 CTACGAACAATCCCGGGGAG 59.896 60.000 23.50 13.53 34.05 4.30
62 63 0.615544 ACTACGAACAATCCCGGGGA 60.616 55.000 23.50 20.15 35.55 4.81
63 64 1.068127 CTACTACGAACAATCCCGGGG 59.932 57.143 23.50 6.77 0.00 5.73
64 65 1.753073 ACTACTACGAACAATCCCGGG 59.247 52.381 16.85 16.85 0.00 5.73
65 66 3.879295 TCTACTACTACGAACAATCCCGG 59.121 47.826 0.00 0.00 0.00 5.73
66 67 5.450171 CATCTACTACTACGAACAATCCCG 58.550 45.833 0.00 0.00 0.00 5.14
67 68 5.221130 GCATCTACTACTACGAACAATCCC 58.779 45.833 0.00 0.00 0.00 3.85
68 69 5.221130 GGCATCTACTACTACGAACAATCC 58.779 45.833 0.00 0.00 0.00 3.01
69 70 4.910456 CGGCATCTACTACTACGAACAATC 59.090 45.833 0.00 0.00 0.00 2.67
70 71 4.261489 CCGGCATCTACTACTACGAACAAT 60.261 45.833 0.00 0.00 0.00 2.71
71 72 3.065786 CCGGCATCTACTACTACGAACAA 59.934 47.826 0.00 0.00 0.00 2.83
72 73 2.615447 CCGGCATCTACTACTACGAACA 59.385 50.000 0.00 0.00 0.00 3.18
73 74 2.604132 GCCGGCATCTACTACTACGAAC 60.604 54.545 24.80 0.00 0.00 3.95
74 75 1.605710 GCCGGCATCTACTACTACGAA 59.394 52.381 24.80 0.00 0.00 3.85
75 76 1.233019 GCCGGCATCTACTACTACGA 58.767 55.000 24.80 0.00 0.00 3.43
76 77 0.949397 TGCCGGCATCTACTACTACG 59.051 55.000 29.03 0.00 0.00 3.51
77 78 1.955080 ACTGCCGGCATCTACTACTAC 59.045 52.381 32.87 0.00 0.00 2.73
78 79 1.954382 CACTGCCGGCATCTACTACTA 59.046 52.381 32.87 1.81 0.00 1.82
79 80 0.747255 CACTGCCGGCATCTACTACT 59.253 55.000 32.87 1.77 0.00 2.57
80 81 0.744874 TCACTGCCGGCATCTACTAC 59.255 55.000 32.87 0.00 0.00 2.73
81 82 1.032794 CTCACTGCCGGCATCTACTA 58.967 55.000 32.87 11.54 0.00 1.82
82 83 0.972983 ACTCACTGCCGGCATCTACT 60.973 55.000 32.87 10.10 0.00 2.57
83 84 0.807667 CACTCACTGCCGGCATCTAC 60.808 60.000 32.87 0.00 0.00 2.59
84 85 1.517361 CACTCACTGCCGGCATCTA 59.483 57.895 32.87 16.88 0.00 1.98
85 86 2.267006 CACTCACTGCCGGCATCT 59.733 61.111 32.87 15.94 0.00 2.90
86 87 2.238847 TACCACTCACTGCCGGCATC 62.239 60.000 32.87 0.00 0.00 3.91
87 88 1.626356 ATACCACTCACTGCCGGCAT 61.626 55.000 32.87 17.66 0.00 4.40
88 89 1.836999 AATACCACTCACTGCCGGCA 61.837 55.000 30.59 30.59 0.00 5.69
89 90 1.078426 AATACCACTCACTGCCGGC 60.078 57.895 22.73 22.73 0.00 6.13
90 91 0.249120 TGAATACCACTCACTGCCGG 59.751 55.000 0.00 0.00 0.00 6.13
91 92 1.359848 GTGAATACCACTCACTGCCG 58.640 55.000 0.00 0.00 42.44 5.69
98 99 9.122779 AGTGAGTAACTATAGTGAATACCACTC 57.877 37.037 19.14 15.98 44.70 3.51
100 101 8.900781 TGAGTGAGTAACTATAGTGAATACCAC 58.099 37.037 6.06 13.70 42.04 4.16
101 102 9.121658 CTGAGTGAGTAACTATAGTGAATACCA 57.878 37.037 6.06 3.82 40.07 3.25
102 103 9.339850 TCTGAGTGAGTAACTATAGTGAATACC 57.660 37.037 6.06 1.50 40.07 2.73
112 113 8.158789 GGGAGTACTATCTGAGTGAGTAACTAT 58.841 40.741 0.00 0.00 40.07 2.12
113 114 7.347748 AGGGAGTACTATCTGAGTGAGTAACTA 59.652 40.741 0.00 0.00 40.07 2.24
114 115 6.159046 AGGGAGTACTATCTGAGTGAGTAACT 59.841 42.308 0.00 0.00 43.85 2.24
115 116 6.358991 AGGGAGTACTATCTGAGTGAGTAAC 58.641 44.000 0.00 0.00 39.39 2.50
116 117 6.409464 GGAGGGAGTACTATCTGAGTGAGTAA 60.409 46.154 0.00 0.00 39.39 2.24
117 118 5.072058 GGAGGGAGTACTATCTGAGTGAGTA 59.928 48.000 0.00 0.00 39.39 2.59
118 119 4.141344 GGAGGGAGTACTATCTGAGTGAGT 60.141 50.000 0.00 0.00 39.39 3.41
119 120 4.394729 GGAGGGAGTACTATCTGAGTGAG 58.605 52.174 0.00 0.00 39.39 3.51
120 121 3.181453 CGGAGGGAGTACTATCTGAGTGA 60.181 52.174 0.00 0.00 39.39 3.41
121 122 3.142951 CGGAGGGAGTACTATCTGAGTG 58.857 54.545 0.00 0.00 39.39 3.51
122 123 2.778850 ACGGAGGGAGTACTATCTGAGT 59.221 50.000 14.76 6.92 42.69 3.41
123 124 3.495434 ACGGAGGGAGTACTATCTGAG 57.505 52.381 14.76 6.45 0.00 3.35
124 125 3.201487 TGAACGGAGGGAGTACTATCTGA 59.799 47.826 14.76 0.00 0.00 3.27
125 126 3.552875 TGAACGGAGGGAGTACTATCTG 58.447 50.000 0.00 2.44 0.00 2.90
126 127 3.947612 TGAACGGAGGGAGTACTATCT 57.052 47.619 0.00 0.00 0.00 1.98
127 128 5.532664 AAATGAACGGAGGGAGTACTATC 57.467 43.478 0.00 0.00 0.00 2.08
128 129 5.952347 AAAATGAACGGAGGGAGTACTAT 57.048 39.130 0.00 0.00 0.00 2.12
129 130 5.750352 AAAAATGAACGGAGGGAGTACTA 57.250 39.130 0.00 0.00 0.00 1.82
130 131 4.635699 AAAAATGAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
131 132 7.983484 TCTTATAAAAATGAACGGAGGGAGTAC 59.017 37.037 0.00 0.00 0.00 2.73
132 133 8.081517 TCTTATAAAAATGAACGGAGGGAGTA 57.918 34.615 0.00 0.00 0.00 2.59
133 134 6.954232 TCTTATAAAAATGAACGGAGGGAGT 58.046 36.000 0.00 0.00 0.00 3.85
134 135 7.934120 AGATCTTATAAAAATGAACGGAGGGAG 59.066 37.037 0.00 0.00 0.00 4.30
135 136 7.802117 AGATCTTATAAAAATGAACGGAGGGA 58.198 34.615 0.00 0.00 0.00 4.20
136 137 8.345565 CAAGATCTTATAAAAATGAACGGAGGG 58.654 37.037 7.86 0.00 0.00 4.30
137 138 9.109393 TCAAGATCTTATAAAAATGAACGGAGG 57.891 33.333 7.86 0.00 0.00 4.30
152 153 9.730705 TTGTCTGAAATGTCTTCAAGATCTTAT 57.269 29.630 7.86 0.00 0.00 1.73
153 154 9.730705 ATTGTCTGAAATGTCTTCAAGATCTTA 57.269 29.630 7.86 0.00 0.00 2.10
154 155 8.512956 CATTGTCTGAAATGTCTTCAAGATCTT 58.487 33.333 0.88 0.88 33.65 2.40
155 156 7.664731 ACATTGTCTGAAATGTCTTCAAGATCT 59.335 33.333 10.41 0.00 45.47 2.75
156 157 7.749570 CACATTGTCTGAAATGTCTTCAAGATC 59.250 37.037 12.25 0.00 45.47 2.75
157 158 7.591165 CACATTGTCTGAAATGTCTTCAAGAT 58.409 34.615 12.25 0.00 45.47 2.40
158 159 6.513884 GCACATTGTCTGAAATGTCTTCAAGA 60.514 38.462 12.25 0.00 45.47 3.02
159 160 5.628193 GCACATTGTCTGAAATGTCTTCAAG 59.372 40.000 12.25 5.42 45.47 3.02
160 161 5.067544 TGCACATTGTCTGAAATGTCTTCAA 59.932 36.000 12.25 0.00 45.47 2.69
161 162 4.579753 TGCACATTGTCTGAAATGTCTTCA 59.420 37.500 12.25 9.40 45.47 3.02
162 163 5.112220 TGCACATTGTCTGAAATGTCTTC 57.888 39.130 12.25 7.82 45.47 2.87
163 164 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
164 165 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
165 166 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
167 168 5.521010 ACTGTTTTGCACATTGTCTGAAATG 59.479 36.000 0.00 9.50 42.21 2.32
168 169 5.663456 ACTGTTTTGCACATTGTCTGAAAT 58.337 33.333 0.00 0.00 33.76 2.17
169 170 5.070770 ACTGTTTTGCACATTGTCTGAAA 57.929 34.783 0.00 0.00 33.76 2.69
170 171 4.398988 AGACTGTTTTGCACATTGTCTGAA 59.601 37.500 7.47 0.00 38.74 3.02
171 172 3.947196 AGACTGTTTTGCACATTGTCTGA 59.053 39.130 7.47 0.00 38.74 3.27
172 173 4.297299 AGACTGTTTTGCACATTGTCTG 57.703 40.909 7.47 0.00 38.74 3.51
173 174 6.639632 AATAGACTGTTTTGCACATTGTCT 57.360 33.333 11.50 11.50 41.52 3.41
174 175 7.222611 ACAAAATAGACTGTTTTGCACATTGTC 59.777 33.333 27.62 0.00 45.70 3.18
175 176 7.010367 CACAAAATAGACTGTTTTGCACATTGT 59.990 33.333 27.62 11.85 45.70 2.71
176 177 7.010367 ACACAAAATAGACTGTTTTGCACATTG 59.990 33.333 27.62 21.66 45.70 2.82
177 178 7.041107 ACACAAAATAGACTGTTTTGCACATT 58.959 30.769 27.62 12.33 45.70 2.71
178 179 6.572519 ACACAAAATAGACTGTTTTGCACAT 58.427 32.000 27.62 12.62 45.70 3.21
179 180 5.960113 ACACAAAATAGACTGTTTTGCACA 58.040 33.333 27.62 0.00 45.70 4.57
180 181 6.310224 ACAACACAAAATAGACTGTTTTGCAC 59.690 34.615 27.62 0.00 45.70 4.57
181 182 6.393990 ACAACACAAAATAGACTGTTTTGCA 58.606 32.000 27.62 0.00 45.70 4.08
182 183 6.751888 AGACAACACAAAATAGACTGTTTTGC 59.248 34.615 27.62 15.54 45.70 3.68
183 184 7.967854 TCAGACAACACAAAATAGACTGTTTTG 59.032 33.333 26.63 26.63 46.64 2.44
184 185 8.050778 TCAGACAACACAAAATAGACTGTTTT 57.949 30.769 4.25 4.25 0.00 2.43
185 186 7.624360 TCAGACAACACAAAATAGACTGTTT 57.376 32.000 0.00 0.00 0.00 2.83
186 187 7.624360 TTCAGACAACACAAAATAGACTGTT 57.376 32.000 0.00 0.00 0.00 3.16
187 188 7.472543 GTTTCAGACAACACAAAATAGACTGT 58.527 34.615 0.00 0.00 0.00 3.55
188 189 6.628856 CGTTTCAGACAACACAAAATAGACTG 59.371 38.462 0.00 0.00 0.00 3.51
189 190 6.537301 TCGTTTCAGACAACACAAAATAGACT 59.463 34.615 0.00 0.00 0.00 3.24
190 191 6.627671 GTCGTTTCAGACAACACAAAATAGAC 59.372 38.462 0.00 0.00 40.65 2.59
191 192 6.537301 AGTCGTTTCAGACAACACAAAATAGA 59.463 34.615 0.00 0.00 43.24 1.98
192 193 6.715464 AGTCGTTTCAGACAACACAAAATAG 58.285 36.000 0.00 0.00 43.24 1.73
193 194 6.671614 AGTCGTTTCAGACAACACAAAATA 57.328 33.333 0.00 0.00 43.24 1.40
194 195 5.560966 AGTCGTTTCAGACAACACAAAAT 57.439 34.783 0.00 0.00 43.24 1.82
195 196 5.365403 AAGTCGTTTCAGACAACACAAAA 57.635 34.783 0.00 0.00 43.24 2.44
196 197 5.408909 TGTAAGTCGTTTCAGACAACACAAA 59.591 36.000 0.00 0.00 43.24 2.83
197 198 4.930405 TGTAAGTCGTTTCAGACAACACAA 59.070 37.500 0.00 0.00 43.24 3.33
198 199 4.496360 TGTAAGTCGTTTCAGACAACACA 58.504 39.130 0.00 0.00 43.24 3.72
199 200 5.459110 TTGTAAGTCGTTTCAGACAACAC 57.541 39.130 0.00 0.00 43.24 3.32
200 201 6.483385 TTTTGTAAGTCGTTTCAGACAACA 57.517 33.333 0.00 1.46 43.24 3.33
201 202 7.694784 TCATTTTTGTAAGTCGTTTCAGACAAC 59.305 33.333 0.00 0.00 43.24 3.32
202 203 7.753659 TCATTTTTGTAAGTCGTTTCAGACAA 58.246 30.769 0.00 0.00 43.24 3.18
203 204 7.310072 TCATTTTTGTAAGTCGTTTCAGACA 57.690 32.000 0.00 0.00 43.24 3.41
204 205 7.694784 TGTTCATTTTTGTAAGTCGTTTCAGAC 59.305 33.333 0.00 0.00 41.23 3.51
205 206 7.753659 TGTTCATTTTTGTAAGTCGTTTCAGA 58.246 30.769 0.00 0.00 0.00 3.27
206 207 7.908082 TCTGTTCATTTTTGTAAGTCGTTTCAG 59.092 33.333 0.00 0.00 0.00 3.02
207 208 7.753659 TCTGTTCATTTTTGTAAGTCGTTTCA 58.246 30.769 0.00 0.00 0.00 2.69
208 209 7.376072 CCTCTGTTCATTTTTGTAAGTCGTTTC 59.624 37.037 0.00 0.00 0.00 2.78
209 210 7.193595 CCTCTGTTCATTTTTGTAAGTCGTTT 58.806 34.615 0.00 0.00 0.00 3.60
210 211 6.238648 CCCTCTGTTCATTTTTGTAAGTCGTT 60.239 38.462 0.00 0.00 0.00 3.85
211 212 5.238650 CCCTCTGTTCATTTTTGTAAGTCGT 59.761 40.000 0.00 0.00 0.00 4.34
212 213 5.468746 TCCCTCTGTTCATTTTTGTAAGTCG 59.531 40.000 0.00 0.00 0.00 4.18
213 214 6.486993 ACTCCCTCTGTTCATTTTTGTAAGTC 59.513 38.462 0.00 0.00 0.00 3.01
214 215 6.365520 ACTCCCTCTGTTCATTTTTGTAAGT 58.634 36.000 0.00 0.00 0.00 2.24
215 216 6.884280 ACTCCCTCTGTTCATTTTTGTAAG 57.116 37.500 0.00 0.00 0.00 2.34
216 217 7.514721 ACTACTCCCTCTGTTCATTTTTGTAA 58.485 34.615 0.00 0.00 0.00 2.41
217 218 7.074653 ACTACTCCCTCTGTTCATTTTTGTA 57.925 36.000 0.00 0.00 0.00 2.41
218 219 5.941788 ACTACTCCCTCTGTTCATTTTTGT 58.058 37.500 0.00 0.00 0.00 2.83
219 220 7.386851 TCTACTACTCCCTCTGTTCATTTTTG 58.613 38.462 0.00 0.00 0.00 2.44
220 221 7.554959 TCTACTACTCCCTCTGTTCATTTTT 57.445 36.000 0.00 0.00 0.00 1.94
221 222 7.554959 TTCTACTACTCCCTCTGTTCATTTT 57.445 36.000 0.00 0.00 0.00 1.82
222 223 7.554959 TTTCTACTACTCCCTCTGTTCATTT 57.445 36.000 0.00 0.00 0.00 2.32
223 224 7.400339 TGATTTCTACTACTCCCTCTGTTCATT 59.600 37.037 0.00 0.00 0.00 2.57
224 225 6.897966 TGATTTCTACTACTCCCTCTGTTCAT 59.102 38.462 0.00 0.00 0.00 2.57
225 226 6.153000 GTGATTTCTACTACTCCCTCTGTTCA 59.847 42.308 0.00 0.00 0.00 3.18
226 227 6.406065 GGTGATTTCTACTACTCCCTCTGTTC 60.406 46.154 0.00 0.00 0.00 3.18
227 228 5.422650 GGTGATTTCTACTACTCCCTCTGTT 59.577 44.000 0.00 0.00 0.00 3.16
228 229 4.957327 GGTGATTTCTACTACTCCCTCTGT 59.043 45.833 0.00 0.00 0.00 3.41
229 230 4.036971 CGGTGATTTCTACTACTCCCTCTG 59.963 50.000 0.00 0.00 0.00 3.35
230 231 4.208746 CGGTGATTTCTACTACTCCCTCT 58.791 47.826 0.00 0.00 0.00 3.69
231 232 3.952967 ACGGTGATTTCTACTACTCCCTC 59.047 47.826 0.00 0.00 0.00 4.30
232 233 3.700038 CACGGTGATTTCTACTACTCCCT 59.300 47.826 0.74 0.00 0.00 4.20
233 234 3.181478 CCACGGTGATTTCTACTACTCCC 60.181 52.174 10.28 0.00 0.00 4.30
234 235 3.446516 ACCACGGTGATTTCTACTACTCC 59.553 47.826 10.28 0.00 0.00 3.85
235 236 4.715527 ACCACGGTGATTTCTACTACTC 57.284 45.455 10.28 0.00 0.00 2.59
244 245 2.632602 TGGCCACACCACGGTGATTT 62.633 55.000 22.81 0.00 46.36 2.17
275 276 3.258228 GGTTTCCAAATTTATGGCACGG 58.742 45.455 0.00 0.00 40.46 4.94
288 289 3.462021 CCGAAATTGCTTTGGTTTCCAA 58.538 40.909 0.00 0.00 42.29 3.53
318 319 9.261180 GCATGCTTCAAGTACTACTAATATCAA 57.739 33.333 11.37 0.00 0.00 2.57
319 320 8.642432 AGCATGCTTCAAGTACTACTAATATCA 58.358 33.333 16.30 0.00 0.00 2.15
320 321 8.920665 CAGCATGCTTCAAGTACTACTAATATC 58.079 37.037 19.98 0.00 0.00 1.63
321 322 7.875041 CCAGCATGCTTCAAGTACTACTAATAT 59.125 37.037 19.98 0.00 31.97 1.28
324 352 5.419542 CCAGCATGCTTCAAGTACTACTAA 58.580 41.667 19.98 0.00 31.97 2.24
355 383 3.423154 GTCTGACAAAGCGGCCCG 61.423 66.667 0.00 0.00 0.00 6.13
361 389 1.004440 AGAGGGCGTCTGACAAAGC 60.004 57.895 9.23 3.19 32.57 3.51
363 391 1.671742 GGAGAGGGCGTCTGACAAA 59.328 57.895 15.38 0.00 34.71 2.83
376 404 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
377 405 3.309296 GAGAGAGAGAGAGAGAGGGAGA 58.691 54.545 0.00 0.00 0.00 3.71
378 406 3.041211 TGAGAGAGAGAGAGAGAGGGAG 58.959 54.545 0.00 0.00 0.00 4.30
379 407 2.771943 GTGAGAGAGAGAGAGAGAGGGA 59.228 54.545 0.00 0.00 0.00 4.20
380 408 2.483714 CGTGAGAGAGAGAGAGAGAGGG 60.484 59.091 0.00 0.00 0.00 4.30
381 409 2.483714 CCGTGAGAGAGAGAGAGAGAGG 60.484 59.091 0.00 0.00 0.00 3.69
382 410 2.826428 CCGTGAGAGAGAGAGAGAGAG 58.174 57.143 0.00 0.00 0.00 3.20
383 411 1.134521 GCCGTGAGAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
384 412 1.299541 GCCGTGAGAGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
385 413 0.107410 GGCCGTGAGAGAGAGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
386 414 1.101049 GGGCCGTGAGAGAGAGAGAG 61.101 65.000 0.00 0.00 0.00 3.20
387 415 1.077357 GGGCCGTGAGAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
421 449 2.312722 TCCGGTCTCGTCTCTCTAAG 57.687 55.000 0.00 0.00 33.95 2.18
422 450 3.118334 AGAATCCGGTCTCGTCTCTCTAA 60.118 47.826 0.00 0.00 33.95 2.10
424 452 1.210967 AGAATCCGGTCTCGTCTCTCT 59.789 52.381 0.00 0.00 33.95 3.10
425 453 1.670791 AGAATCCGGTCTCGTCTCTC 58.329 55.000 0.00 0.00 33.95 3.20
426 454 2.131776 AAGAATCCGGTCTCGTCTCT 57.868 50.000 0.00 0.00 33.95 3.10
466 507 5.154222 GTTGTTAAGTTATGGAGTGCTTGC 58.846 41.667 0.00 0.00 0.00 4.01
482 523 3.938963 GGAGATGCGATCTTGGTTGTTAA 59.061 43.478 0.00 0.00 40.38 2.01
484 525 2.359900 GGAGATGCGATCTTGGTTGTT 58.640 47.619 0.00 0.00 40.38 2.83
527 579 1.342374 GGGCTGAAATGATCCCCTTGT 60.342 52.381 0.00 0.00 32.60 3.16
534 586 2.621998 CAGTCCATGGGCTGAAATGATC 59.378 50.000 38.14 2.81 34.87 2.92
536 588 1.956636 GCAGTCCATGGGCTGAAATGA 60.957 52.381 43.40 5.09 34.87 2.57
540 606 0.895100 GTTGCAGTCCATGGGCTGAA 60.895 55.000 43.40 34.91 34.87 3.02
543 609 1.303888 CAGTTGCAGTCCATGGGCT 60.304 57.895 14.79 14.79 0.00 5.19
570 636 1.216678 GATCTGTCCCTCTCCCTCTCA 59.783 57.143 0.00 0.00 0.00 3.27
635 715 1.528309 CTCCCTCTCCCTCTCTCGC 60.528 68.421 0.00 0.00 0.00 5.03
636 716 0.771127 ATCTCCCTCTCCCTCTCTCG 59.229 60.000 0.00 0.00 0.00 4.04
642 723 1.221781 CCACCTAATCTCCCTCTCCCT 59.778 57.143 0.00 0.00 0.00 4.20
644 725 1.220750 TCCCACCTAATCTCCCTCTCC 59.779 57.143 0.00 0.00 0.00 3.71
646 727 2.524440 TCATCCCACCTAATCTCCCTCT 59.476 50.000 0.00 0.00 0.00 3.69
650 731 3.318313 TCCTTCATCCCACCTAATCTCC 58.682 50.000 0.00 0.00 0.00 3.71
673 756 2.755876 TCTCCTCGTGATGCCGCT 60.756 61.111 0.00 0.00 0.00 5.52
674 757 2.279120 CTCTCCTCGTGATGCCGC 60.279 66.667 0.00 0.00 0.00 6.53
675 758 1.098129 TCTCTCTCCTCGTGATGCCG 61.098 60.000 0.00 0.00 0.00 5.69
676 759 0.667993 CTCTCTCTCCTCGTGATGCC 59.332 60.000 0.00 0.00 0.00 4.40
750 843 5.105513 ACCTTCTTCTGCTCTCTAAACTAGC 60.106 44.000 0.00 0.00 36.77 3.42
834 950 2.265904 GGCTTTGTTGGGTCCGGTC 61.266 63.158 0.00 0.00 0.00 4.79
835 951 2.203437 GGCTTTGTTGGGTCCGGT 60.203 61.111 0.00 0.00 0.00 5.28
836 952 2.989253 GGGCTTTGTTGGGTCCGG 60.989 66.667 0.00 0.00 0.00 5.14
837 953 3.361977 CGGGCTTTGTTGGGTCCG 61.362 66.667 0.00 0.00 44.13 4.79
838 954 2.203437 ACGGGCTTTGTTGGGTCC 60.203 61.111 0.00 0.00 0.00 4.46
839 955 2.265904 GGACGGGCTTTGTTGGGTC 61.266 63.158 0.00 0.00 0.00 4.46
897 1013 0.105709 CTCCTCTCCTCTTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
898 1014 0.930726 TCTCCTCTCCTCTTCTCCCC 59.069 60.000 0.00 0.00 0.00 4.81
899 1015 1.133482 CCTCTCCTCTCCTCTTCTCCC 60.133 61.905 0.00 0.00 0.00 4.30
900 1016 1.850345 TCCTCTCCTCTCCTCTTCTCC 59.150 57.143 0.00 0.00 0.00 3.71
904 1031 1.341976 GCACTCCTCTCCTCTCCTCTT 60.342 57.143 0.00 0.00 0.00 2.85
1088 1229 3.930012 GGAGAGGGGGCGGATTCG 61.930 72.222 0.00 0.00 39.81 3.34
1146 1305 1.227823 CTCCCACCACGCAAGAACA 60.228 57.895 0.00 0.00 43.62 3.18
1280 1439 6.409524 TTTAACTTGAGACTTTACCTCGGA 57.590 37.500 0.00 0.00 33.51 4.55
1296 1455 3.566742 ACAACCGAGCCGAAATTTAACTT 59.433 39.130 0.00 0.00 0.00 2.66
1357 1517 3.904965 GGGGAAAAACCATTAAAGACCCA 59.095 43.478 0.00 0.00 41.20 4.51
1375 1535 2.203422 CCAAAACAGGCACGGGGA 60.203 61.111 0.00 0.00 0.00 4.81
1376 1536 2.520741 ACCAAAACAGGCACGGGG 60.521 61.111 0.00 0.00 0.00 5.73
1379 1539 2.034558 AGATTTCACCAAAACAGGCACG 59.965 45.455 0.00 0.00 0.00 5.34
1380 1540 3.733443 AGATTTCACCAAAACAGGCAC 57.267 42.857 0.00 0.00 0.00 5.01
1411 1573 0.673644 CAATTGCGAGAACGGGGAGT 60.674 55.000 0.00 0.00 40.15 3.85
1434 1596 3.383185 ACAAGAACCAAATCGAAAGGCAA 59.617 39.130 0.00 0.00 0.00 4.52
1435 1597 2.955660 ACAAGAACCAAATCGAAAGGCA 59.044 40.909 0.00 0.00 0.00 4.75
1439 1601 6.443934 TTTCAGACAAGAACCAAATCGAAA 57.556 33.333 0.00 0.00 0.00 3.46
1449 1611 3.981416 GGCCGAAAATTTCAGACAAGAAC 59.019 43.478 6.53 0.00 0.00 3.01
1485 1653 0.524816 GTAATCGCTCAACCGCTCGA 60.525 55.000 0.00 0.00 35.34 4.04
1564 1738 7.044641 CGATTCATTCAAGAGAAGTACTGTACG 60.045 40.741 11.97 0.00 37.14 3.67
1623 1803 2.753043 CCACAGTCCCAGCCATGC 60.753 66.667 0.00 0.00 0.00 4.06
1678 1862 1.891150 GGACGTCAACTTGTAGGGAGA 59.109 52.381 18.91 0.00 0.00 3.71
1679 1863 1.616865 TGGACGTCAACTTGTAGGGAG 59.383 52.381 18.91 0.00 0.00 4.30
1733 1918 6.461509 GCAGATATTATCCCCAACAAACAAGG 60.462 42.308 0.00 0.00 0.00 3.61
1737 1922 6.715347 AAGCAGATATTATCCCCAACAAAC 57.285 37.500 0.00 0.00 0.00 2.93
1738 1923 8.830915 TTTAAGCAGATATTATCCCCAACAAA 57.169 30.769 0.00 0.00 0.00 2.83
1741 1926 9.301897 AGATTTTAAGCAGATATTATCCCCAAC 57.698 33.333 0.00 0.00 0.00 3.77
1744 1929 7.148000 GGCAGATTTTAAGCAGATATTATCCCC 60.148 40.741 0.00 0.00 0.00 4.81
1893 2108 0.101219 CGATGACTGATGAGCGACCA 59.899 55.000 0.00 0.00 0.00 4.02
1941 2159 6.397480 CGAAAAGACAAACACGCATTATTCAC 60.397 38.462 0.00 0.00 0.00 3.18
1993 2211 5.064452 CAGCAGAAGAAGAAATGATAACGCT 59.936 40.000 0.00 0.00 0.00 5.07
2066 2291 0.463295 CCATCGCTGCTCCAATCTGT 60.463 55.000 0.00 0.00 0.00 3.41
2070 2295 1.452651 CACCCATCGCTGCTCCAAT 60.453 57.895 0.00 0.00 0.00 3.16
2081 2306 0.967380 CCTCCACCTTTGCACCCATC 60.967 60.000 0.00 0.00 0.00 3.51
2087 2312 1.371183 CTCGACCTCCACCTTTGCA 59.629 57.895 0.00 0.00 0.00 4.08
2102 2327 0.815615 GCCCAAGATTGTAGCCCTCG 60.816 60.000 0.00 0.00 0.00 4.63
2329 2558 5.946377 GGGAAACTGAAATCATCTAGGTGTT 59.054 40.000 2.20 0.00 0.00 3.32
2330 2559 5.501156 GGGAAACTGAAATCATCTAGGTGT 58.499 41.667 2.20 0.00 0.00 4.16
2331 2560 4.884164 GGGGAAACTGAAATCATCTAGGTG 59.116 45.833 0.00 0.00 0.00 4.00
2332 2561 4.790790 AGGGGAAACTGAAATCATCTAGGT 59.209 41.667 0.00 0.00 0.00 3.08
2333 2562 5.379706 AGGGGAAACTGAAATCATCTAGG 57.620 43.478 0.00 0.00 0.00 3.02
2334 2563 6.418101 TCAAGGGGAAACTGAAATCATCTAG 58.582 40.000 0.00 0.00 0.00 2.43
2350 2581 7.937700 AGAAATACAGAAGATATCAAGGGGA 57.062 36.000 5.32 0.00 0.00 4.81
2490 2727 0.812811 TCTGCGATGCATCTTCCAGC 60.813 55.000 23.73 18.67 38.13 4.85
2518 2755 1.532523 TGCAGCGGAATTTGTGATGA 58.467 45.000 0.00 0.00 0.00 2.92
2653 2890 0.829990 CCTTGTTTGGTGGGCAAAGT 59.170 50.000 0.00 0.00 0.00 2.66
2658 2895 2.736531 CTGCCTTGTTTGGTGGGC 59.263 61.111 0.00 0.00 44.31 5.36
2789 3026 1.339438 CCGCCCTAGCTAATGATGCAT 60.339 52.381 0.00 0.00 36.60 3.96
2793 3030 1.625818 CCTTCCGCCCTAGCTAATGAT 59.374 52.381 0.00 0.00 36.60 2.45
2794 3031 1.048601 CCTTCCGCCCTAGCTAATGA 58.951 55.000 0.00 0.00 36.60 2.57
2828 3065 5.529060 GGAAAGGAGGTTGCACTATTATGAG 59.471 44.000 0.00 0.00 0.00 2.90
2889 3132 3.313526 CCAGAATTGGCTTATTCAGGTCG 59.686 47.826 12.98 0.00 36.78 4.79
2922 3165 1.145738 ACTGTCCCATTTGTTCTGGCT 59.854 47.619 0.00 0.00 32.08 4.75
3312 3556 2.023791 TCACCCTACAGGCCTACATGTA 60.024 50.000 3.98 5.25 40.58 2.29
3424 3668 5.236478 ACATGCATAGTTACGGAAATGTAGC 59.764 40.000 0.00 0.00 0.00 3.58
3433 3677 3.444916 AGTCGAACATGCATAGTTACGG 58.555 45.455 19.77 12.35 0.00 4.02
3435 3679 6.363626 CCTGATAGTCGAACATGCATAGTTAC 59.636 42.308 12.51 9.36 0.00 2.50
3466 3710 8.469309 AAGGAGAGAATTGAAAAGAATCAACA 57.531 30.769 0.00 0.00 41.78 3.33
3468 3712 9.971922 GAAAAGGAGAGAATTGAAAAGAATCAA 57.028 29.630 0.00 0.00 43.03 2.57
3469 3713 9.359653 AGAAAAGGAGAGAATTGAAAAGAATCA 57.640 29.630 0.00 0.00 0.00 2.57
3479 3723 6.201615 GCACCAAAAAGAAAAGGAGAGAATTG 59.798 38.462 0.00 0.00 0.00 2.32
3483 3727 4.339247 CAGCACCAAAAAGAAAAGGAGAGA 59.661 41.667 0.00 0.00 0.00 3.10
3484 3728 4.614946 CAGCACCAAAAAGAAAAGGAGAG 58.385 43.478 0.00 0.00 0.00 3.20
3489 3733 3.524541 AGTGCAGCACCAAAAAGAAAAG 58.475 40.909 22.41 0.00 34.49 2.27
3492 3736 4.935352 ATAAGTGCAGCACCAAAAAGAA 57.065 36.364 22.41 0.00 34.49 2.52
3494 3738 4.810491 ACAAATAAGTGCAGCACCAAAAAG 59.190 37.500 22.41 10.99 34.49 2.27
3520 3764 1.200020 GAAAGGGTTCATGGCTTCACG 59.800 52.381 0.00 0.00 33.61 4.35
3555 3830 4.084537 CGCTTTACAGGACACAACACTTAG 60.085 45.833 0.00 0.00 0.00 2.18
3575 3850 9.411801 CAGATTATAATAGTAATGTCACACGCT 57.588 33.333 0.00 0.00 0.00 5.07
3635 3910 5.123820 ACCAACAGATTGATTCCGTACAATG 59.876 40.000 0.00 0.00 38.15 2.82
3643 3918 8.506168 TTATTACAGACCAACAGATTGATTCC 57.494 34.615 0.00 0.00 38.15 3.01
3707 3982 5.010012 CCCAGAAAAGACATAAACTGCACTT 59.990 40.000 0.00 0.00 0.00 3.16
3708 3983 4.520492 CCCAGAAAAGACATAAACTGCACT 59.480 41.667 0.00 0.00 0.00 4.40
3959 4234 1.217882 CGGATGAACTATTCGGGCAC 58.782 55.000 0.00 0.00 33.99 5.01
4115 4390 3.864003 GGTCTACTATGCAAGAACCGAAC 59.136 47.826 0.00 0.00 0.00 3.95
4116 4391 3.118884 GGGTCTACTATGCAAGAACCGAA 60.119 47.826 4.47 0.00 39.71 4.30
4178 4453 6.205464 TGACAGTTGAAGATCCATTGAAACTC 59.795 38.462 0.00 0.00 0.00 3.01
4214 4489 1.082496 GTTCGCAGCACTGAAGCAC 60.082 57.895 0.81 0.00 36.85 4.40
4222 4497 0.318955 AATGCTTTGGTTCGCAGCAC 60.319 50.000 0.00 0.00 46.09 4.40
4338 4616 4.681744 TCCAAGTCACTTGAAATTGTTGC 58.318 39.130 19.75 0.00 43.42 4.17
4342 4620 4.572985 TGCTCCAAGTCACTTGAAATTG 57.427 40.909 19.75 1.64 43.42 2.32
4347 4625 3.351740 TGTTTTGCTCCAAGTCACTTGA 58.648 40.909 19.75 4.44 43.42 3.02
4372 4650 2.340328 GGGTGTCCAAACATCGGCC 61.340 63.158 0.00 0.00 37.39 6.13
4396 4674 2.306805 TCAGGATCTTCATGGCTGTGTT 59.693 45.455 0.00 0.00 0.00 3.32
4397 4675 1.911357 TCAGGATCTTCATGGCTGTGT 59.089 47.619 0.00 0.00 0.00 3.72
4401 4679 3.383825 GCAAAATCAGGATCTTCATGGCT 59.616 43.478 0.00 0.00 0.00 4.75
4403 4681 4.994907 TGCAAAATCAGGATCTTCATGG 57.005 40.909 0.00 0.00 0.00 3.66
4426 4704 3.141767 AGTTCTTTCTGCCCTTACCAC 57.858 47.619 0.00 0.00 0.00 4.16
4430 4708 8.472007 TCAAATTAAAGTTCTTTCTGCCCTTA 57.528 30.769 0.87 0.00 0.00 2.69
4507 4785 4.137116 TGCTGTAATCCACCTACACATC 57.863 45.455 0.00 0.00 0.00 3.06
4508 4786 4.778213 ATGCTGTAATCCACCTACACAT 57.222 40.909 0.00 0.00 0.00 3.21
4520 4798 6.662755 TCCCTCAACTTTGATATGCTGTAAT 58.337 36.000 0.00 0.00 36.46 1.89
4749 5030 1.080569 CGGGAATGTTGCCACAAGC 60.081 57.895 4.17 0.00 38.81 4.01
4756 5037 1.666189 GAGTTCTAGCGGGAATGTTGC 59.334 52.381 0.00 0.00 0.00 4.17
4760 5041 3.131223 TCTCTTGAGTTCTAGCGGGAATG 59.869 47.826 0.00 0.00 0.00 2.67
4763 5044 2.370349 CTCTCTTGAGTTCTAGCGGGA 58.630 52.381 0.00 0.00 35.67 5.14
4764 5045 2.861462 CTCTCTTGAGTTCTAGCGGG 57.139 55.000 0.00 0.00 35.67 6.13
4787 5068 5.048083 GGATGAAAGAGGTAAACATGCAACA 60.048 40.000 0.00 0.00 31.55 3.33
4788 5069 5.402398 GGATGAAAGAGGTAAACATGCAAC 58.598 41.667 0.00 0.00 31.55 4.17
4789 5070 4.462483 GGGATGAAAGAGGTAAACATGCAA 59.538 41.667 0.00 0.00 32.52 4.08
4810 5091 0.918983 TCTAGGCATGGGTTTCTGGG 59.081 55.000 0.00 0.00 0.00 4.45
4976 5257 4.144297 TCAGAAACTTAGGCTTTGCATGT 58.856 39.130 0.00 0.00 0.00 3.21
5135 5416 4.485163 CATGGTCGTCGATGCTTGATATA 58.515 43.478 0.00 0.00 0.00 0.86
5226 5507 3.872696 TGTCTTCAAGCTTCAGTGTCAA 58.127 40.909 0.00 0.00 0.00 3.18
5257 5538 3.982241 GCCTGCTGCACAACCCAC 61.982 66.667 0.00 0.00 40.77 4.61
5260 5541 3.982241 GTGGCCTGCTGCACAACC 61.982 66.667 3.32 0.67 43.89 3.77
5298 5579 0.528017 GAGACGGTCTGCTCATCACA 59.472 55.000 16.72 0.00 0.00 3.58
5378 5659 3.604582 CAGGATGTCTTTCTGGAAGTCC 58.395 50.000 0.00 0.00 36.70 3.85
5417 5698 1.301558 GATGATCTCAGGCCGGCAG 60.302 63.158 30.85 20.54 0.00 4.85
5474 5755 3.551407 GACTCCCAGGATCCGCCC 61.551 72.222 5.98 0.00 37.37 6.13
5577 5858 2.159212 GGACCTCTTCTTCTTCTACGCC 60.159 54.545 0.00 0.00 0.00 5.68
6032 6327 3.895656 ACATGAGCGAGCTAACCCTAATA 59.104 43.478 0.00 0.00 0.00 0.98
6109 6404 0.108207 CACATCATCTCCAGCCTCCC 59.892 60.000 0.00 0.00 0.00 4.30
6121 6416 2.043652 GCAGCCCCACCACATCAT 60.044 61.111 0.00 0.00 0.00 2.45
6162 6457 1.129251 CGTGTACTCAATGCAGGCAAG 59.871 52.381 0.00 0.00 0.00 4.01
6200 6495 1.812922 CCAGGCAGCACGAGTCATC 60.813 63.158 0.00 0.00 0.00 2.92
6213 6508 1.454201 GACTTTACTTCAGGCCAGGC 58.546 55.000 5.01 1.26 0.00 4.85
6214 6509 1.630878 AGGACTTTACTTCAGGCCAGG 59.369 52.381 5.01 0.00 42.86 4.45
6215 6510 2.616510 CCAGGACTTTACTTCAGGCCAG 60.617 54.545 5.01 0.00 42.86 4.85
6216 6511 1.351017 CCAGGACTTTACTTCAGGCCA 59.649 52.381 5.01 0.00 42.86 5.36
6217 6512 1.628846 TCCAGGACTTTACTTCAGGCC 59.371 52.381 0.00 0.00 40.26 5.19
6303 6598 2.166664 TGGTGGTGGTGTTTAAAAGCAC 59.833 45.455 8.80 8.80 43.61 4.40
6304 6599 2.457598 TGGTGGTGGTGTTTAAAAGCA 58.542 42.857 0.00 0.00 0.00 3.91
6324 6620 4.783621 ATGCTGGCGCGACCACAT 62.784 61.111 10.82 17.75 46.36 3.21
6356 6652 9.988350 CTGCCACTGTAATAACTAATTTACTTG 57.012 33.333 0.00 0.00 0.00 3.16
6365 6661 8.244113 CGATATCATCTGCCACTGTAATAACTA 58.756 37.037 3.12 0.00 0.00 2.24
6366 6662 7.093354 CGATATCATCTGCCACTGTAATAACT 58.907 38.462 3.12 0.00 0.00 2.24
6390 7154 7.851822 AATAAATGCGAAATAAATAGTGGCG 57.148 32.000 0.00 0.00 0.00 5.69
6416 7180 3.136763 AGTGGCAATATCTCATCGCAAG 58.863 45.455 0.00 0.00 0.00 4.01
6451 7216 6.652900 AGAGCACAAAAGATACTCTCCTTTTC 59.347 38.462 0.00 0.00 39.69 2.29
6476 7245 3.893324 TGGGACATTGGGACGTGA 58.107 55.556 0.00 0.00 0.00 4.35
6485 7254 0.323360 CCGTTGGGACATGGGACATT 60.323 55.000 0.00 0.00 38.57 2.71
6486 7255 1.204786 TCCGTTGGGACATGGGACAT 61.205 55.000 0.00 0.00 39.97 3.06
6503 7273 0.250338 AGGTTTGTCCTCGTGCTTCC 60.250 55.000 0.00 0.00 44.42 3.46
6504 7274 3.307379 AGGTTTGTCCTCGTGCTTC 57.693 52.632 0.00 0.00 44.42 3.86
6522 7292 0.611618 GCACACCACCATGGGATTGA 60.612 55.000 18.09 0.00 43.37 2.57
6560 7330 3.471806 GCTCTCCCTCGTTCCCCC 61.472 72.222 0.00 0.00 0.00 5.40
6566 7336 1.760086 CCCAGATGCTCTCCCTCGT 60.760 63.158 0.00 0.00 0.00 4.18
6877 7875 1.699656 GCGCAGTATCAGCAGTGGTG 61.700 60.000 16.28 16.28 0.00 4.17
7015 8031 6.566187 GCGTCCTACTCATACAGTATACAGTG 60.566 46.154 10.91 1.09 36.96 3.66
7021 8037 4.462133 ACAGCGTCCTACTCATACAGTAT 58.538 43.478 0.00 0.00 36.96 2.12
7025 8041 3.376234 GTGTACAGCGTCCTACTCATACA 59.624 47.826 0.00 0.00 0.00 2.29
7030 8046 0.098376 CGGTGTACAGCGTCCTACTC 59.902 60.000 33.16 1.89 46.01 2.59
7031 8047 2.177950 CGGTGTACAGCGTCCTACT 58.822 57.895 33.16 0.00 46.01 2.57
7032 8048 4.779819 CGGTGTACAGCGTCCTAC 57.220 61.111 33.16 3.36 46.01 3.18
7039 8055 4.057432 TGTTTTTACTACCGGTGTACAGC 58.943 43.478 19.93 15.12 0.00 4.40
7048 8064 5.962433 TCATCTCCTCTGTTTTTACTACCG 58.038 41.667 0.00 0.00 0.00 4.02
7051 8067 6.156949 AGGCATCATCTCCTCTGTTTTTACTA 59.843 38.462 0.00 0.00 0.00 1.82
7052 8068 5.045286 AGGCATCATCTCCTCTGTTTTTACT 60.045 40.000 0.00 0.00 0.00 2.24
7067 8085 2.739885 AGACGCTGATAGGCATCATC 57.260 50.000 1.10 0.00 40.40 2.92
7073 8091 2.164624 CCCATACTAGACGCTGATAGGC 59.835 54.545 0.00 0.00 0.00 3.93
7074 8092 2.755655 CCCCATACTAGACGCTGATAGG 59.244 54.545 0.00 0.00 0.00 2.57
7075 8093 3.422796 ACCCCATACTAGACGCTGATAG 58.577 50.000 0.00 0.00 0.00 2.08
7076 8094 3.520691 ACCCCATACTAGACGCTGATA 57.479 47.619 0.00 0.00 0.00 2.15
7077 8095 2.383442 ACCCCATACTAGACGCTGAT 57.617 50.000 0.00 0.00 0.00 2.90
7078 8096 3.520691 ATACCCCATACTAGACGCTGA 57.479 47.619 0.00 0.00 0.00 4.26
7079 8097 4.602340 AAATACCCCATACTAGACGCTG 57.398 45.455 0.00 0.00 0.00 5.18
7080 8098 4.407945 ACAAAATACCCCATACTAGACGCT 59.592 41.667 0.00 0.00 0.00 5.07
7081 8099 4.700700 ACAAAATACCCCATACTAGACGC 58.299 43.478 0.00 0.00 0.00 5.19
7082 8100 5.916883 CGTACAAAATACCCCATACTAGACG 59.083 44.000 0.00 0.00 0.00 4.18
7083 8101 5.693555 GCGTACAAAATACCCCATACTAGAC 59.306 44.000 0.00 0.00 0.00 2.59
7084 8102 5.507817 CGCGTACAAAATACCCCATACTAGA 60.508 44.000 0.00 0.00 0.00 2.43
7085 8103 4.682860 CGCGTACAAAATACCCCATACTAG 59.317 45.833 0.00 0.00 0.00 2.57
7086 8104 4.501229 CCGCGTACAAAATACCCCATACTA 60.501 45.833 4.92 0.00 0.00 1.82
7087 8105 3.460103 CGCGTACAAAATACCCCATACT 58.540 45.455 0.00 0.00 0.00 2.12
7088 8106 2.545106 CCGCGTACAAAATACCCCATAC 59.455 50.000 4.92 0.00 0.00 2.39
7089 8107 2.485124 CCCGCGTACAAAATACCCCATA 60.485 50.000 4.92 0.00 0.00 2.74
7090 8108 1.670791 CCGCGTACAAAATACCCCAT 58.329 50.000 4.92 0.00 0.00 4.00
7091 8109 0.392729 CCCGCGTACAAAATACCCCA 60.393 55.000 4.92 0.00 0.00 4.96
7092 8110 1.096967 CCCCGCGTACAAAATACCCC 61.097 60.000 4.92 0.00 0.00 4.95
7093 8111 1.717791 GCCCCGCGTACAAAATACCC 61.718 60.000 4.92 0.00 0.00 3.69
7094 8112 1.025647 TGCCCCGCGTACAAAATACC 61.026 55.000 4.92 0.00 0.00 2.73
7095 8113 1.018910 ATGCCCCGCGTACAAAATAC 58.981 50.000 4.92 0.00 0.00 1.89
7096 8114 1.018148 CATGCCCCGCGTACAAAATA 58.982 50.000 4.92 0.00 0.00 1.40
7097 8115 0.963355 ACATGCCCCGCGTACAAAAT 60.963 50.000 4.92 0.00 0.00 1.82
7098 8116 1.173444 AACATGCCCCGCGTACAAAA 61.173 50.000 4.92 0.00 0.00 2.44
7099 8117 1.579084 GAACATGCCCCGCGTACAAA 61.579 55.000 4.92 0.00 0.00 2.83
7100 8118 2.032834 AACATGCCCCGCGTACAA 59.967 55.556 4.92 0.00 0.00 2.41
7101 8119 2.435234 GAACATGCCCCGCGTACA 60.435 61.111 4.92 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.