Multiple sequence alignment - TraesCS5B01G401100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G401100 chr5B 100.000 5393 0 0 1 5393 577940591 577945983 0.000000e+00 9960.0
1 TraesCS5B01G401100 chr5B 90.698 129 11 1 816 944 697392802 697392675 2.580000e-38 171.0
2 TraesCS5B01G401100 chr5B 89.474 133 12 2 816 947 343925367 343925236 3.340000e-37 167.0
3 TraesCS5B01G401100 chr5B 96.552 58 2 0 803 860 577941335 577941392 4.450000e-16 97.1
4 TraesCS5B01G401100 chr5B 96.552 58 2 0 745 802 577941393 577941450 4.450000e-16 97.1
5 TraesCS5B01G401100 chr5B 90.164 61 5 1 946 1005 697392630 697392570 1.610000e-10 78.7
6 TraesCS5B01G401100 chr5B 88.710 62 4 2 946 1005 343925196 343925136 7.490000e-09 73.1
7 TraesCS5B01G401100 chr5D 96.270 2708 83 7 2261 4968 470478013 470480702 0.000000e+00 4425.0
8 TraesCS5B01G401100 chr5D 96.255 1335 45 3 803 2136 470476699 470478029 0.000000e+00 2183.0
9 TraesCS5B01G401100 chr5D 93.256 771 37 12 39 802 470475994 470476756 0.000000e+00 1122.0
10 TraesCS5B01G401100 chr5D 94.444 36 1 1 1 35 470475943 470475978 3.000000e-03 54.7
11 TraesCS5B01G401100 chr5A 96.810 1724 53 2 2261 3984 591129152 591130873 0.000000e+00 2878.0
12 TraesCS5B01G401100 chr5A 90.984 1209 65 14 4013 5219 591130872 591132038 0.000000e+00 1589.0
13 TraesCS5B01G401100 chr5A 93.968 315 18 1 1822 2136 591128855 591129168 4.890000e-130 475.0
14 TraesCS5B01G401100 chr5A 98.519 135 0 2 2137 2271 464473745 464473877 2.510000e-58 237.0
15 TraesCS5B01G401100 chr5A 84.685 111 12 4 5284 5393 591132044 591132150 7.390000e-19 106.0
16 TraesCS5B01G401100 chr2A 99.254 134 1 0 2137 2270 32141453 32141320 5.400000e-60 243.0
17 TraesCS5B01G401100 chr7A 100.000 130 0 0 2137 2266 15837986 15838115 1.940000e-59 241.0
18 TraesCS5B01G401100 chr6B 97.826 138 3 0 2137 2274 28503768 28503631 6.980000e-59 239.0
19 TraesCS5B01G401100 chr6A 97.826 138 1 2 2137 2274 63769786 63769921 2.510000e-58 237.0
20 TraesCS5B01G401100 chr6A 97.810 137 1 2 2137 2273 70421056 70420922 9.030000e-58 235.0
21 TraesCS5B01G401100 chr4A 97.810 137 1 2 2137 2273 6886861 6886995 9.030000e-58 235.0
22 TraesCS5B01G401100 chr3B 92.771 166 6 5 2108 2273 397180693 397180534 9.030000e-58 235.0
23 TraesCS5B01G401100 chr3B 90.977 133 10 2 816 947 763593341 763593472 1.540000e-40 178.0
24 TraesCS5B01G401100 chr3B 91.473 129 10 1 816 944 212893094 212892967 5.550000e-40 176.0
25 TraesCS5B01G401100 chr3B 79.851 134 21 4 577 709 763593216 763593344 5.750000e-15 93.5
26 TraesCS5B01G401100 chr3B 90.164 61 5 1 946 1005 763593512 763593572 1.610000e-10 78.7
27 TraesCS5B01G401100 chr1B 99.194 124 1 0 2139 2262 6763441 6763318 1.950000e-54 224.0
28 TraesCS5B01G401100 chr1B 76.639 244 48 9 1032 1271 6100185 6100423 5.670000e-25 126.0
29 TraesCS5B01G401100 chr6D 90.299 134 11 2 816 947 392527237 392527370 2.000000e-39 174.0
30 TraesCS5B01G401100 chr6D 90.164 61 5 1 946 1005 392527410 392527470 1.610000e-10 78.7
31 TraesCS5B01G401100 chr2D 76.995 213 38 10 1064 1272 16495106 16494901 1.590000e-20 111.0
32 TraesCS5B01G401100 chr2B 76.471 204 33 12 1094 1285 9618077 9618277 4.450000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G401100 chr5B 577940591 577945983 5392 False 9960.000 9960 100.00000 1 5393 1 chr5B.!!$F1 5392
1 TraesCS5B01G401100 chr5D 470475943 470480702 4759 False 1946.175 4425 95.05625 1 4968 4 chr5D.!!$F1 4967
2 TraesCS5B01G401100 chr5A 591128855 591132150 3295 False 1262.000 2878 91.61175 1822 5393 4 chr5A.!!$F2 3571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 225 0.340208 GAAGGGGAGGAGGAGAAGGA 59.660 60.0 0.0 0.00 0.00 3.36 F
1169 1191 0.254178 ATTGGCGACCTCTTCTGCAT 59.746 50.0 0.0 0.00 0.00 3.96 F
1320 1342 0.527169 GCTACTCGTTTACCGCCTCC 60.527 60.0 0.0 0.00 36.19 4.30 F
1848 1870 0.700564 ACCAGATCATGCCACAGGTT 59.299 50.0 0.0 0.00 0.00 3.50 F
2182 2204 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.0 0.00 37.28 3.67 F
2183 2205 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.0 0.0 0.00 34.81 2.73 F
4057 4079 0.254178 ATCGGAAGCCACTTGCAGAT 59.746 50.0 0.0 1.27 44.83 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1217 0.112995 TGCTTGAGCCAATCCCTTGT 59.887 50.000 0.00 0.00 41.18 3.16 R
2163 2185 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74 R
2164 2186 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18 R
3649 3671 1.078848 GCTTGGTCAGCTGACGGAT 60.079 57.895 34.28 0.00 46.27 4.18 R
4057 4079 2.169352 GCTCCAAGTGAAGCTGGATCTA 59.831 50.000 0.00 0.00 0.00 1.98 R
4119 4141 4.551388 GAAGAAGCTTCAGACTCTCGAAA 58.449 43.478 27.57 0.00 0.00 3.46 R
5286 5313 0.316937 ACGCACGTGCTTTCAACATG 60.317 50.000 35.27 19.91 39.32 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 1.077716 CTCCCCGTTCCCATTCCAC 60.078 63.158 0.00 0.00 0.00 4.02
165 179 1.316706 GGAGACGAGCAGTACCAGCT 61.317 60.000 9.93 9.93 46.82 4.24
202 216 1.077644 CGACGAGAGAAGGGGAGGA 60.078 63.158 0.00 0.00 0.00 3.71
206 220 0.467290 CGAGAGAAGGGGAGGAGGAG 60.467 65.000 0.00 0.00 0.00 3.69
207 221 0.930726 GAGAGAAGGGGAGGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
208 222 1.289530 GAGAGAAGGGGAGGAGGAGAA 59.710 57.143 0.00 0.00 0.00 2.87
209 223 1.290732 AGAGAAGGGGAGGAGGAGAAG 59.709 57.143 0.00 0.00 0.00 2.85
210 224 0.341609 AGAAGGGGAGGAGGAGAAGG 59.658 60.000 0.00 0.00 0.00 3.46
211 225 0.340208 GAAGGGGAGGAGGAGAAGGA 59.660 60.000 0.00 0.00 0.00 3.36
212 226 0.341609 AAGGGGAGGAGGAGAAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
218 232 1.074850 GGAGGAGAAGGAGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
299 313 3.706373 GCTCGCCCTGGTCTCCAA 61.706 66.667 0.00 0.00 30.80 3.53
308 322 1.550524 CCTGGTCTCCAATTCGTCTCA 59.449 52.381 0.00 0.00 30.80 3.27
321 335 2.599281 TCTCACGAACGGCAGGGA 60.599 61.111 0.00 0.00 0.00 4.20
374 388 3.607987 CGCCGCGTCGTCATCTTC 61.608 66.667 0.00 0.00 0.00 2.87
375 389 2.506217 GCCGCGTCGTCATCTTCA 60.506 61.111 4.92 0.00 0.00 3.02
376 390 1.878522 GCCGCGTCGTCATCTTCAT 60.879 57.895 4.92 0.00 0.00 2.57
377 391 1.812214 GCCGCGTCGTCATCTTCATC 61.812 60.000 4.92 0.00 0.00 2.92
378 392 1.532343 CCGCGTCGTCATCTTCATCG 61.532 60.000 4.92 0.00 0.00 3.84
379 393 0.588980 CGCGTCGTCATCTTCATCGA 60.589 55.000 0.00 0.00 0.00 3.59
380 394 0.840729 GCGTCGTCATCTTCATCGAC 59.159 55.000 6.50 6.50 45.70 4.20
392 412 1.227089 CATCGACGAAGGGAGGCTG 60.227 63.158 0.00 0.00 0.00 4.85
395 415 2.683933 GACGAAGGGAGGCTGGGA 60.684 66.667 0.00 0.00 0.00 4.37
397 417 2.364317 CGAAGGGAGGCTGGGAGA 60.364 66.667 0.00 0.00 0.00 3.71
401 421 2.445654 GGGAGGCTGGGAGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
445 465 2.844839 GGGGGATCCAGGGTCGAG 60.845 72.222 15.23 0.00 35.00 4.04
489 509 2.639327 GGAGCCCTGCGTGCAAATT 61.639 57.895 0.00 0.00 0.00 1.82
490 510 1.290009 GAGCCCTGCGTGCAAATTT 59.710 52.632 0.00 0.00 0.00 1.82
492 512 2.088178 GCCCTGCGTGCAAATTTCG 61.088 57.895 0.00 0.00 0.00 3.46
517 537 0.803768 CGCTCTTCACACATCGAGGG 60.804 60.000 0.69 0.00 0.00 4.30
559 579 2.554032 CAGGCAAGTTTGTTCAGGTAGG 59.446 50.000 0.00 0.00 0.00 3.18
563 583 1.878953 AGTTTGTTCAGGTAGGTGCG 58.121 50.000 0.00 0.00 0.00 5.34
566 586 2.813908 GTTCAGGTAGGTGCGGCG 60.814 66.667 0.51 0.51 0.00 6.46
567 587 3.307906 TTCAGGTAGGTGCGGCGT 61.308 61.111 9.37 0.00 0.00 5.68
607 627 1.606531 CTGGCCCTTAAGCAGCTCT 59.393 57.895 0.00 0.00 0.00 4.09
619 639 0.600057 GCAGCTCTTTTTGTCCCCTG 59.400 55.000 0.00 0.00 0.00 4.45
641 661 0.514691 GAACAGGCAAGTTCGCAGAG 59.485 55.000 7.01 0.00 38.58 3.35
651 671 1.962822 TTCGCAGAGGCAAGTGCAG 60.963 57.895 5.52 0.00 44.36 4.41
699 720 8.499162 CAAGTGTAAGAGGACATTTGTTTAGAG 58.501 37.037 4.23 0.00 40.35 2.43
782 803 6.982852 TCATTAGGCAATTCCGTGTTAAAAA 58.017 32.000 0.00 0.00 40.77 1.94
814 835 9.102757 CAATTCTGCACATAAATAGAGTAGTGT 57.897 33.333 0.00 0.00 0.00 3.55
817 838 9.967346 TTCTGCACATAAATAGAGTAGTGTATC 57.033 33.333 0.00 0.00 0.00 2.24
818 839 9.131791 TCTGCACATAAATAGAGTAGTGTATCA 57.868 33.333 0.00 0.00 0.00 2.15
819 840 9.920133 CTGCACATAAATAGAGTAGTGTATCAT 57.080 33.333 0.00 0.00 0.00 2.45
830 851 8.256356 AGAGTAGTGTATCATTAGGCAATTCT 57.744 34.615 0.00 0.00 0.00 2.40
831 852 8.147058 AGAGTAGTGTATCATTAGGCAATTCTG 58.853 37.037 0.00 0.00 0.00 3.02
832 853 7.796054 AGTAGTGTATCATTAGGCAATTCTGT 58.204 34.615 0.00 0.00 0.00 3.41
833 854 6.932356 AGTGTATCATTAGGCAATTCTGTG 57.068 37.500 0.00 0.00 0.00 3.66
834 855 6.418101 AGTGTATCATTAGGCAATTCTGTGT 58.582 36.000 0.00 0.00 0.00 3.72
835 856 6.886459 AGTGTATCATTAGGCAATTCTGTGTT 59.114 34.615 0.00 0.00 0.00 3.32
836 857 8.046708 AGTGTATCATTAGGCAATTCTGTGTTA 58.953 33.333 0.00 0.00 0.00 2.41
837 858 8.673711 GTGTATCATTAGGCAATTCTGTGTTAA 58.326 33.333 0.00 0.00 0.00 2.01
838 859 9.237187 TGTATCATTAGGCAATTCTGTGTTAAA 57.763 29.630 0.00 0.00 0.00 1.52
841 862 8.810652 TCATTAGGCAATTCTGTGTTAAAAAC 57.189 30.769 0.00 0.00 0.00 2.43
842 863 7.593273 TCATTAGGCAATTCTGTGTTAAAAACG 59.407 33.333 0.00 0.00 0.00 3.60
843 864 4.048504 AGGCAATTCTGTGTTAAAAACGC 58.951 39.130 0.00 0.00 42.12 4.84
844 865 3.183574 GGCAATTCTGTGTTAAAAACGCC 59.816 43.478 1.26 0.00 41.11 5.68
845 866 3.121496 GCAATTCTGTGTTAAAAACGCCG 60.121 43.478 1.26 0.00 41.11 6.46
846 867 2.108178 TTCTGTGTTAAAAACGCCGC 57.892 45.000 1.26 0.00 41.11 6.53
847 868 1.015109 TCTGTGTTAAAAACGCCGCA 58.985 45.000 1.26 0.00 41.11 5.69
848 869 1.400846 TCTGTGTTAAAAACGCCGCAA 59.599 42.857 1.26 0.00 41.11 4.85
849 870 2.033550 TCTGTGTTAAAAACGCCGCAAT 59.966 40.909 1.26 0.00 41.11 3.56
850 871 2.792116 CTGTGTTAAAAACGCCGCAATT 59.208 40.909 1.26 0.00 41.11 2.32
851 872 2.789893 TGTGTTAAAAACGCCGCAATTC 59.210 40.909 1.26 0.00 41.11 2.17
852 873 3.047093 GTGTTAAAAACGCCGCAATTCT 58.953 40.909 0.00 0.00 35.92 2.40
853 874 3.046390 TGTTAAAAACGCCGCAATTCTG 58.954 40.909 0.00 0.00 0.00 3.02
854 875 1.692296 TAAAAACGCCGCAATTCTGC 58.308 45.000 0.00 0.00 45.75 4.26
883 904 6.800543 ACTGTATGTAGTCTCTAGCATGTTG 58.199 40.000 0.00 0.00 0.00 3.33
897 918 4.202441 AGCATGTTGTTCTCTGTTTCTGT 58.798 39.130 0.00 0.00 0.00 3.41
937 958 3.999663 AGTATGCTTCTCTGTTTCTGCAC 59.000 43.478 0.00 0.00 33.16 4.57
953 974 4.362279 TCTGCACATTTTTGTCTTGCTTC 58.638 39.130 0.00 0.00 34.18 3.86
974 995 0.403271 AGTCTCACCCAATTGCTGCT 59.597 50.000 0.00 0.00 0.00 4.24
1163 1185 1.298859 GCGTTCATTGGCGACCTCTT 61.299 55.000 5.89 0.00 0.00 2.85
1169 1191 0.254178 ATTGGCGACCTCTTCTGCAT 59.746 50.000 0.00 0.00 0.00 3.96
1195 1217 4.988716 ACGGCCACGACCTCCTGA 62.989 66.667 2.24 0.00 44.60 3.86
1248 1270 1.060622 CTACGACGTCGAGGACTGC 59.939 63.158 41.52 0.00 43.02 4.40
1279 1301 4.720902 CCCACCGGCTGCATCACA 62.721 66.667 0.00 0.00 0.00 3.58
1293 1315 1.497309 ATCACAACCCCACCACCGAT 61.497 55.000 0.00 0.00 0.00 4.18
1304 1326 0.613260 ACCACCGATCTTTGCTGCTA 59.387 50.000 0.00 0.00 0.00 3.49
1305 1327 1.009829 CCACCGATCTTTGCTGCTAC 58.990 55.000 0.00 0.00 0.00 3.58
1306 1328 1.406069 CCACCGATCTTTGCTGCTACT 60.406 52.381 0.00 0.00 0.00 2.57
1312 1334 3.857665 CGATCTTTGCTGCTACTCGTTTA 59.142 43.478 0.00 0.00 0.00 2.01
1320 1342 0.527169 GCTACTCGTTTACCGCCTCC 60.527 60.000 0.00 0.00 36.19 4.30
1324 1346 1.076332 CTCGTTTACCGCCTCCAAAG 58.924 55.000 0.00 0.00 36.19 2.77
1407 1429 3.055719 CGGGTGCAGCAAATCGGT 61.056 61.111 19.06 0.00 0.00 4.69
1410 1432 1.503542 GGTGCAGCAAATCGGTGAG 59.496 57.895 11.86 0.00 46.47 3.51
1466 1488 4.007644 CAGCGACAGGCCTGGTGA 62.008 66.667 35.42 0.00 45.17 4.02
1520 1542 1.227943 AGACAAGGCTTGCGCTTGA 60.228 52.632 26.45 0.00 36.09 3.02
1686 1708 1.538634 CCAACAAACCATGGTGTGCTG 60.539 52.381 31.47 28.43 45.81 4.41
1709 1731 2.056906 ATAGTCGGATTGGCAGGGGC 62.057 60.000 0.00 0.00 40.13 5.80
1741 1763 8.045507 AGACCACAATAGCCAGATCATTATATG 58.954 37.037 0.00 0.00 0.00 1.78
1826 1848 6.263412 AGAGGCAGTACTAAGGAGTATACA 57.737 41.667 5.50 0.00 40.32 2.29
1848 1870 0.700564 ACCAGATCATGCCACAGGTT 59.299 50.000 0.00 0.00 0.00 3.50
1924 1946 1.271656 GCAGCACCTTGAAGAAAGCAT 59.728 47.619 0.00 0.00 34.24 3.79
1941 1963 6.311445 AGAAAGCATGTGATAGACTACAAACG 59.689 38.462 0.00 0.00 0.00 3.60
2143 2165 8.792633 TGTTATTTGAATTCAAGTTAGTCCTGG 58.207 33.333 19.71 0.00 37.15 4.45
2144 2166 9.010029 GTTATTTGAATTCAAGTTAGTCCTGGA 57.990 33.333 19.71 2.76 37.15 3.86
2145 2167 9.581289 TTATTTGAATTCAAGTTAGTCCTGGAA 57.419 29.630 19.71 4.07 37.15 3.53
2146 2168 7.889873 TTTGAATTCAAGTTAGTCCTGGAAA 57.110 32.000 19.64 0.00 37.15 3.13
2147 2169 6.877611 TGAATTCAAGTTAGTCCTGGAAAC 57.122 37.500 5.45 0.00 28.44 2.78
2148 2170 6.361433 TGAATTCAAGTTAGTCCTGGAAACA 58.639 36.000 5.45 0.00 39.59 2.83
2162 2184 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2163 2185 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2164 2186 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2165 2187 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2166 2188 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2167 2189 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2168 2190 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2169 2191 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2170 2192 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2171 2193 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2172 2194 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2173 2195 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2174 2196 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2175 2197 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2176 2198 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2177 2199 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2178 2200 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2179 2201 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2180 2202 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2181 2203 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2182 2204 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2183 2205 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2184 2206 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2185 2207 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2186 2208 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2187 2209 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2188 2210 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2189 2211 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2190 2212 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2191 2213 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2192 2214 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2193 2215 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2194 2216 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2195 2217 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2196 2218 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2197 2219 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2198 2220 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2199 2221 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2204 2226 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2205 2227 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2206 2228 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2207 2229 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2208 2230 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2209 2231 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2210 2232 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2211 2233 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2212 2234 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2213 2235 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2214 2236 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2215 2237 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2216 2238 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2217 2239 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2218 2240 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2219 2241 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2220 2242 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2221 2243 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2222 2244 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2223 2245 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2248 2270 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2249 2271 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2250 2272 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2251 2273 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2252 2274 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2253 2275 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2254 2276 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2255 2277 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2256 2278 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2257 2279 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2418 2440 2.079158 CTCGTGCTGGATGATGTTTGT 58.921 47.619 0.00 0.00 0.00 2.83
2481 2503 6.420913 AAAAGTGAGAAAGGTAGCAGAGTA 57.579 37.500 0.00 0.00 0.00 2.59
2535 2557 5.940470 CAGTGCTTCTGTAAGGAATAAAGGT 59.060 40.000 2.20 0.00 39.17 3.50
3112 3134 3.660501 AGGCGGGTGAAGAAAATTTTC 57.339 42.857 21.00 21.00 37.45 2.29
3566 3588 2.165998 GAAGGCATTGAAGCTTCCTGT 58.834 47.619 23.42 6.75 34.17 4.00
3649 3671 4.809193 AGGACCATCTTCAGTAGCAGATA 58.191 43.478 0.00 0.00 0.00 1.98
3738 3760 5.412904 ACTTTTCGATGAATTGAGGTTCTCC 59.587 40.000 0.00 0.00 0.00 3.71
3837 3859 2.770048 CTCTCCTCCCCGCCCAAT 60.770 66.667 0.00 0.00 0.00 3.16
4057 4079 0.254178 ATCGGAAGCCACTTGCAGAT 59.746 50.000 0.00 1.27 44.83 2.90
4077 4099 4.344679 AGATAGATCCAGCTTCACTTGGAG 59.655 45.833 0.00 0.00 31.70 3.86
4245 4267 0.875059 CTTTTGAGGGAGTTGACGGC 59.125 55.000 0.00 0.00 0.00 5.68
4290 4312 7.693952 TGAAAGAGTTGCACTTAAGTTTACAG 58.306 34.615 5.07 0.00 0.00 2.74
4377 4399 5.598005 TGAGAATGGACCAAAGTTGATTGTT 59.402 36.000 0.00 0.00 0.00 2.83
4471 4495 6.159988 GTCTAGCTATATGGGTGAACATCAC 58.840 44.000 0.41 1.88 46.23 3.06
4487 4511 5.388225 ACATCACGTTGACAAAATTTTGC 57.612 34.783 26.94 20.07 41.79 3.68
4500 4524 5.464389 ACAAAATTTTGCTTCTCATCAGTGC 59.536 36.000 26.94 0.00 41.79 4.40
4662 4686 5.412594 GGATAACTTCTTGTGCTTCATGTGA 59.587 40.000 0.00 0.00 0.00 3.58
4663 4687 6.072508 GGATAACTTCTTGTGCTTCATGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
4697 4721 2.084546 GCCTTGTCCGTATGAGCTTTT 58.915 47.619 0.00 0.00 0.00 2.27
4698 4722 2.159517 GCCTTGTCCGTATGAGCTTTTG 60.160 50.000 0.00 0.00 0.00 2.44
4699 4723 3.074412 CCTTGTCCGTATGAGCTTTTGT 58.926 45.455 0.00 0.00 0.00 2.83
4700 4724 3.120199 CCTTGTCCGTATGAGCTTTTGTG 60.120 47.826 0.00 0.00 0.00 3.33
4701 4725 3.120321 TGTCCGTATGAGCTTTTGTGT 57.880 42.857 0.00 0.00 0.00 3.72
4702 4726 4.260139 TGTCCGTATGAGCTTTTGTGTA 57.740 40.909 0.00 0.00 0.00 2.90
4703 4727 3.991773 TGTCCGTATGAGCTTTTGTGTAC 59.008 43.478 0.00 0.00 0.00 2.90
4704 4728 3.370061 GTCCGTATGAGCTTTTGTGTACC 59.630 47.826 0.00 0.00 0.00 3.34
4705 4729 2.347452 CCGTATGAGCTTTTGTGTACCG 59.653 50.000 0.00 0.00 0.00 4.02
4707 4731 3.181534 CGTATGAGCTTTTGTGTACCGTG 60.182 47.826 0.00 0.00 0.00 4.94
4708 4732 0.941542 TGAGCTTTTGTGTACCGTGC 59.058 50.000 0.00 0.00 0.00 5.34
4751 4775 0.179051 GCTGAGCCCTTGGATCTGAG 60.179 60.000 9.12 0.00 38.95 3.35
4752 4776 0.469070 CTGAGCCCTTGGATCTGAGG 59.531 60.000 7.65 7.65 38.95 3.86
4753 4777 0.043183 TGAGCCCTTGGATCTGAGGA 59.957 55.000 14.19 0.00 39.11 3.71
4754 4778 0.758123 GAGCCCTTGGATCTGAGGAG 59.242 60.000 14.19 7.41 34.95 3.69
4790 4817 1.482593 ACTTAGGAGGAGAATGTGGCG 59.517 52.381 0.00 0.00 0.00 5.69
4797 4824 0.109597 GGAGAATGTGGCGTTTGCTG 60.110 55.000 0.00 0.00 42.25 4.41
4835 4862 1.014352 GTGGTGGCGAATGGTGATAC 58.986 55.000 0.00 0.00 0.00 2.24
4836 4863 0.615850 TGGTGGCGAATGGTGATACA 59.384 50.000 0.00 0.00 0.00 2.29
4900 4927 5.978934 ATGCTTTTTGTTCTTTGCTTGAG 57.021 34.783 0.00 0.00 0.00 3.02
4912 4939 4.532126 TCTTTGCTTGAGTATGAGAAGGGA 59.468 41.667 0.00 0.00 0.00 4.20
4929 4956 4.301072 AGGGATACAACAGCTGCTTTTA 57.699 40.909 15.27 5.58 39.74 1.52
4957 4984 9.657419 AGAATTTTGAAGGTAATAAATGCTTGG 57.343 29.630 0.00 0.00 0.00 3.61
4974 5001 3.620821 GCTTGGTGCTCTCAGAATAGAAC 59.379 47.826 0.00 0.00 38.95 3.01
4986 5013 5.851720 TCAGAATAGAACAGCAGATGGATC 58.148 41.667 0.00 0.00 0.00 3.36
4987 5014 5.364735 TCAGAATAGAACAGCAGATGGATCA 59.635 40.000 0.00 0.00 0.00 2.92
5011 5038 9.248291 TCAAAACAGAGTAAAATGCTTGATTTC 57.752 29.630 0.00 0.00 32.76 2.17
5032 5059 1.353076 CCGTGGTACCGTAAAGAAGC 58.647 55.000 7.57 0.00 0.00 3.86
5033 5060 1.353076 CGTGGTACCGTAAAGAAGCC 58.647 55.000 7.57 0.00 0.00 4.35
5061 5088 7.489113 CAGGTAATTAATTTGATGACTGGTTGC 59.511 37.037 5.91 0.00 0.00 4.17
5062 5089 7.178274 AGGTAATTAATTTGATGACTGGTTGCA 59.822 33.333 5.91 0.00 0.00 4.08
5063 5090 7.981225 GGTAATTAATTTGATGACTGGTTGCAT 59.019 33.333 5.91 0.00 0.00 3.96
5064 5091 7.837202 AATTAATTTGATGACTGGTTGCATG 57.163 32.000 0.00 0.00 0.00 4.06
5065 5092 3.880047 ATTTGATGACTGGTTGCATGG 57.120 42.857 0.00 0.00 0.00 3.66
5066 5093 0.889994 TTGATGACTGGTTGCATGGC 59.110 50.000 0.00 0.00 0.00 4.40
5067 5094 0.038599 TGATGACTGGTTGCATGGCT 59.961 50.000 0.00 0.00 0.00 4.75
5068 5095 1.180029 GATGACTGGTTGCATGGCTT 58.820 50.000 0.00 0.00 0.00 4.35
5069 5096 2.290832 TGATGACTGGTTGCATGGCTTA 60.291 45.455 0.00 0.00 0.00 3.09
5070 5097 1.825090 TGACTGGTTGCATGGCTTAG 58.175 50.000 0.00 0.00 0.00 2.18
5071 5098 1.350684 TGACTGGTTGCATGGCTTAGA 59.649 47.619 0.00 0.00 0.00 2.10
5072 5099 2.025981 TGACTGGTTGCATGGCTTAGAT 60.026 45.455 0.00 0.00 0.00 1.98
5073 5100 2.357009 GACTGGTTGCATGGCTTAGATG 59.643 50.000 0.00 0.00 0.00 2.90
5074 5101 2.291153 ACTGGTTGCATGGCTTAGATGT 60.291 45.455 0.00 0.00 0.00 3.06
5075 5102 2.756760 CTGGTTGCATGGCTTAGATGTT 59.243 45.455 0.00 0.00 0.00 2.71
5076 5103 2.492881 TGGTTGCATGGCTTAGATGTTG 59.507 45.455 0.00 0.00 0.00 3.33
5077 5104 2.493278 GGTTGCATGGCTTAGATGTTGT 59.507 45.455 0.00 0.00 0.00 3.32
5078 5105 3.504863 GTTGCATGGCTTAGATGTTGTG 58.495 45.455 0.00 0.00 0.00 3.33
5079 5106 2.093890 TGCATGGCTTAGATGTTGTGG 58.906 47.619 0.00 0.00 0.00 4.17
5080 5107 2.094675 GCATGGCTTAGATGTTGTGGT 58.905 47.619 0.00 0.00 0.00 4.16
5081 5108 2.159338 GCATGGCTTAGATGTTGTGGTG 60.159 50.000 0.00 0.00 0.00 4.17
5082 5109 2.949177 TGGCTTAGATGTTGTGGTGT 57.051 45.000 0.00 0.00 0.00 4.16
5083 5110 2.503331 TGGCTTAGATGTTGTGGTGTG 58.497 47.619 0.00 0.00 0.00 3.82
5084 5111 1.812571 GGCTTAGATGTTGTGGTGTGG 59.187 52.381 0.00 0.00 0.00 4.17
5126 5153 6.019108 ACCATTCCTATTTTCCTGCTTCTTT 58.981 36.000 0.00 0.00 0.00 2.52
5127 5154 6.071165 ACCATTCCTATTTTCCTGCTTCTTTG 60.071 38.462 0.00 0.00 0.00 2.77
5129 5156 3.440173 TCCTATTTTCCTGCTTCTTTGCG 59.560 43.478 0.00 0.00 35.36 4.85
5130 5157 2.070262 ATTTTCCTGCTTCTTTGCGC 57.930 45.000 0.00 0.00 35.36 6.09
5131 5158 1.032014 TTTTCCTGCTTCTTTGCGCT 58.968 45.000 9.73 0.00 35.36 5.92
5132 5159 0.311790 TTTCCTGCTTCTTTGCGCTG 59.688 50.000 9.73 0.00 35.36 5.18
5133 5160 2.126580 CCTGCTTCTTTGCGCTGC 60.127 61.111 9.73 4.10 35.36 5.25
5152 5179 3.030291 TGCTGTTTTGGTGTTGGATTCT 58.970 40.909 0.00 0.00 0.00 2.40
5159 5186 5.514274 TTTGGTGTTGGATTCTTGAAGTC 57.486 39.130 0.00 0.00 0.00 3.01
5207 5234 1.684983 CCCATTGGACAGCCATCATTC 59.315 52.381 3.62 0.00 45.46 2.67
5219 5246 3.084039 GCCATCATTCTGTCCTTGTTGA 58.916 45.455 0.00 0.00 0.00 3.18
5221 5248 4.883585 GCCATCATTCTGTCCTTGTTGATA 59.116 41.667 0.00 0.00 0.00 2.15
5222 5249 5.220931 GCCATCATTCTGTCCTTGTTGATAC 60.221 44.000 0.00 0.00 0.00 2.24
5223 5250 6.118170 CCATCATTCTGTCCTTGTTGATACT 58.882 40.000 0.00 0.00 0.00 2.12
5224 5251 6.600822 CCATCATTCTGTCCTTGTTGATACTT 59.399 38.462 0.00 0.00 0.00 2.24
5225 5252 7.414873 CCATCATTCTGTCCTTGTTGATACTTG 60.415 40.741 0.00 0.00 0.00 3.16
5226 5253 6.533730 TCATTCTGTCCTTGTTGATACTTGT 58.466 36.000 0.00 0.00 0.00 3.16
5227 5254 6.998074 TCATTCTGTCCTTGTTGATACTTGTT 59.002 34.615 0.00 0.00 0.00 2.83
5228 5255 8.154203 TCATTCTGTCCTTGTTGATACTTGTTA 58.846 33.333 0.00 0.00 0.00 2.41
5229 5256 8.783093 CATTCTGTCCTTGTTGATACTTGTTAA 58.217 33.333 0.00 0.00 0.00 2.01
5230 5257 8.918202 TTCTGTCCTTGTTGATACTTGTTAAT 57.082 30.769 0.00 0.00 0.00 1.40
5231 5258 8.322906 TCTGTCCTTGTTGATACTTGTTAATG 57.677 34.615 0.00 0.00 0.00 1.90
5232 5259 7.936847 TCTGTCCTTGTTGATACTTGTTAATGT 59.063 33.333 0.00 0.00 0.00 2.71
5233 5260 8.458573 TGTCCTTGTTGATACTTGTTAATGTT 57.541 30.769 0.00 0.00 0.00 2.71
5234 5261 9.562408 TGTCCTTGTTGATACTTGTTAATGTTA 57.438 29.630 0.00 0.00 0.00 2.41
5236 5263 9.787435 TCCTTGTTGATACTTGTTAATGTTAGT 57.213 29.630 0.00 0.00 0.00 2.24
5237 5264 9.825972 CCTTGTTGATACTTGTTAATGTTAGTG 57.174 33.333 0.00 0.00 0.00 2.74
5254 5281 8.671384 ATGTTAGTGTATCTGTACTCTCTCTC 57.329 38.462 0.00 0.00 36.40 3.20
5255 5282 7.621796 TGTTAGTGTATCTGTACTCTCTCTCA 58.378 38.462 0.00 0.00 36.40 3.27
5256 5283 8.101419 TGTTAGTGTATCTGTACTCTCTCTCAA 58.899 37.037 0.00 0.00 36.40 3.02
5257 5284 8.948145 GTTAGTGTATCTGTACTCTCTCTCAAA 58.052 37.037 0.00 0.00 36.40 2.69
5258 5285 9.516546 TTAGTGTATCTGTACTCTCTCTCAAAA 57.483 33.333 0.00 0.00 36.40 2.44
5259 5286 8.410673 AGTGTATCTGTACTCTCTCTCAAAAA 57.589 34.615 0.00 0.00 30.91 1.94
5299 5326 4.829064 TCCTGTAACATGTTGAAAGCAC 57.171 40.909 21.42 10.38 0.00 4.40
5335 5362 3.191735 GCATTTGCAACAAATCCTTGC 57.808 42.857 0.00 2.23 43.69 4.01
5344 5371 5.530543 TGCAACAAATCCTTGCGATGATATA 59.469 36.000 0.00 0.00 45.92 0.86
5345 5372 6.207221 TGCAACAAATCCTTGCGATGATATAT 59.793 34.615 0.00 0.00 45.92 0.86
5349 5376 9.507329 AACAAATCCTTGCGATGATATATTAGT 57.493 29.630 0.00 0.00 35.84 2.24
5376 5403 5.513233 AGAAGATTTGCATGTTCCTATGGT 58.487 37.500 0.00 0.00 33.90 3.55
5377 5404 5.359009 AGAAGATTTGCATGTTCCTATGGTG 59.641 40.000 0.00 0.00 33.90 4.17
5378 5405 4.858850 AGATTTGCATGTTCCTATGGTGA 58.141 39.130 0.00 0.00 0.00 4.02
5379 5406 4.641989 AGATTTGCATGTTCCTATGGTGAC 59.358 41.667 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 4.708386 TTTCGCGCGGGGTGGAAT 62.708 61.111 31.69 0.00 0.00 3.01
92 106 2.027625 CACCTTGTTCCTCGCCGTC 61.028 63.158 0.00 0.00 0.00 4.79
93 107 2.030562 CACCTTGTTCCTCGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
202 216 2.370633 GCCCTCCCTCCTTCTCCT 59.629 66.667 0.00 0.00 0.00 3.69
308 322 3.382832 CCTCTCCCTGCCGTTCGT 61.383 66.667 0.00 0.00 0.00 3.85
361 375 0.840729 GTCGATGAAGATGACGACGC 59.159 55.000 0.00 0.00 43.60 5.19
374 388 1.227089 CAGCCTCCCTTCGTCGATG 60.227 63.158 0.00 0.00 0.00 3.84
375 389 2.427245 CCAGCCTCCCTTCGTCGAT 61.427 63.158 0.00 0.00 0.00 3.59
376 390 3.068691 CCAGCCTCCCTTCGTCGA 61.069 66.667 0.00 0.00 0.00 4.20
377 391 4.148825 CCCAGCCTCCCTTCGTCG 62.149 72.222 0.00 0.00 0.00 5.12
378 392 2.683933 TCCCAGCCTCCCTTCGTC 60.684 66.667 0.00 0.00 0.00 4.20
379 393 2.685380 CTCCCAGCCTCCCTTCGT 60.685 66.667 0.00 0.00 0.00 3.85
380 394 2.364317 TCTCCCAGCCTCCCTTCG 60.364 66.667 0.00 0.00 0.00 3.79
382 396 2.041928 CCTCTCCCAGCCTCCCTT 59.958 66.667 0.00 0.00 0.00 3.95
383 397 2.955246 TCCTCTCCCAGCCTCCCT 60.955 66.667 0.00 0.00 0.00 4.20
384 398 2.445654 CTCCTCTCCCAGCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
392 412 2.202899 CCCCTAGCCTCCTCTCCC 59.797 72.222 0.00 0.00 0.00 4.30
395 415 2.699496 CCACCCCTAGCCTCCTCT 59.301 66.667 0.00 0.00 0.00 3.69
397 417 4.825679 GGCCACCCCTAGCCTCCT 62.826 72.222 0.00 0.00 46.14 3.69
445 465 2.110420 CTATTTCCCCCGGCGACC 59.890 66.667 9.30 0.00 0.00 4.79
492 512 3.050275 GTGTGAAGAGCGGGGTGC 61.050 66.667 0.00 0.00 46.98 5.01
587 607 3.512516 GCTGCTTAAGGGCCAGCG 61.513 66.667 15.02 4.18 39.04 5.18
619 639 0.874390 TGCGAACTTGCCTGTTCATC 59.126 50.000 15.84 9.20 44.59 2.92
629 649 0.236711 CACTTGCCTCTGCGAACTTG 59.763 55.000 0.00 0.00 41.78 3.16
637 657 2.360852 CCCCTGCACTTGCCTCTG 60.361 66.667 0.00 0.00 41.18 3.35
699 720 3.386078 TGTCAGTATTGCCTGATCTCTCC 59.614 47.826 0.00 0.00 43.03 3.71
804 825 9.368416 AGAATTGCCTAATGATACACTACTCTA 57.632 33.333 0.00 0.00 0.00 2.43
805 826 8.147058 CAGAATTGCCTAATGATACACTACTCT 58.853 37.037 0.00 0.00 0.00 3.24
806 827 7.928706 ACAGAATTGCCTAATGATACACTACTC 59.071 37.037 0.00 0.00 0.00 2.59
807 828 7.712639 CACAGAATTGCCTAATGATACACTACT 59.287 37.037 0.00 0.00 0.00 2.57
808 829 7.495934 ACACAGAATTGCCTAATGATACACTAC 59.504 37.037 0.00 0.00 0.00 2.73
809 830 7.564793 ACACAGAATTGCCTAATGATACACTA 58.435 34.615 0.00 0.00 0.00 2.74
810 831 6.418101 ACACAGAATTGCCTAATGATACACT 58.582 36.000 0.00 0.00 0.00 3.55
811 832 6.683974 ACACAGAATTGCCTAATGATACAC 57.316 37.500 0.00 0.00 0.00 2.90
812 833 8.800370 TTAACACAGAATTGCCTAATGATACA 57.200 30.769 0.00 0.00 0.00 2.29
815 836 9.423061 GTTTTTAACACAGAATTGCCTAATGAT 57.577 29.630 0.00 0.00 0.00 2.45
816 837 7.593273 CGTTTTTAACACAGAATTGCCTAATGA 59.407 33.333 0.00 0.00 0.00 2.57
817 838 7.619161 GCGTTTTTAACACAGAATTGCCTAATG 60.619 37.037 0.00 0.00 0.00 1.90
818 839 6.364976 GCGTTTTTAACACAGAATTGCCTAAT 59.635 34.615 0.00 0.00 0.00 1.73
819 840 5.688176 GCGTTTTTAACACAGAATTGCCTAA 59.312 36.000 0.00 0.00 0.00 2.69
820 841 5.216648 GCGTTTTTAACACAGAATTGCCTA 58.783 37.500 0.00 0.00 0.00 3.93
821 842 4.048504 GCGTTTTTAACACAGAATTGCCT 58.951 39.130 0.00 0.00 0.00 4.75
822 843 3.183574 GGCGTTTTTAACACAGAATTGCC 59.816 43.478 0.00 0.00 0.00 4.52
823 844 3.121496 CGGCGTTTTTAACACAGAATTGC 60.121 43.478 0.00 0.00 0.00 3.56
824 845 3.121496 GCGGCGTTTTTAACACAGAATTG 60.121 43.478 9.37 0.00 0.00 2.32
825 846 3.047093 GCGGCGTTTTTAACACAGAATT 58.953 40.909 9.37 0.00 0.00 2.17
826 847 2.033550 TGCGGCGTTTTTAACACAGAAT 59.966 40.909 9.37 0.00 0.00 2.40
827 848 1.400846 TGCGGCGTTTTTAACACAGAA 59.599 42.857 9.37 0.00 0.00 3.02
828 849 1.015109 TGCGGCGTTTTTAACACAGA 58.985 45.000 9.37 0.00 0.00 3.41
829 850 1.828832 TTGCGGCGTTTTTAACACAG 58.171 45.000 9.37 0.00 0.00 3.66
830 851 2.493713 ATTGCGGCGTTTTTAACACA 57.506 40.000 9.37 0.00 0.00 3.72
831 852 3.047093 AGAATTGCGGCGTTTTTAACAC 58.953 40.909 9.37 0.00 0.00 3.32
832 853 3.046390 CAGAATTGCGGCGTTTTTAACA 58.954 40.909 9.37 0.00 0.00 2.41
833 854 2.160026 GCAGAATTGCGGCGTTTTTAAC 60.160 45.455 9.37 0.00 41.13 2.01
834 855 2.055100 GCAGAATTGCGGCGTTTTTAA 58.945 42.857 9.37 0.00 41.13 1.52
835 856 1.692296 GCAGAATTGCGGCGTTTTTA 58.308 45.000 9.37 0.00 41.13 1.52
836 857 2.516486 GCAGAATTGCGGCGTTTTT 58.484 47.368 9.37 0.00 41.13 1.94
837 858 4.243383 GCAGAATTGCGGCGTTTT 57.757 50.000 9.37 0.00 41.13 2.43
856 877 8.105097 ACATGCTAGAGACTACATACAGTATG 57.895 38.462 17.70 17.70 46.00 2.39
897 918 6.554982 AGCATACTAGAGACACCCATTTCATA 59.445 38.462 0.00 0.00 0.00 2.15
937 958 5.192327 AGACTGGAAGCAAGACAAAAATG 57.808 39.130 0.00 0.00 37.60 2.32
953 974 3.658398 AGCAATTGGGTGAGACTGG 57.342 52.632 7.72 0.00 0.00 4.00
974 995 3.911365 CGATTTGCGATTTTGCTGTACAA 59.089 39.130 0.00 0.00 44.57 2.41
993 1015 1.368950 CACCAGATCCATCGCCGAT 59.631 57.895 0.00 0.00 0.00 4.18
994 1016 2.796193 CCACCAGATCCATCGCCGA 61.796 63.158 0.00 0.00 0.00 5.54
1102 1124 2.117137 GGTGATGTACTGTATGTCGCG 58.883 52.381 0.00 0.00 0.00 5.87
1108 1130 2.033049 GCTCGTCGGTGATGTACTGTAT 59.967 50.000 0.00 0.00 36.98 2.29
1163 1185 4.100084 CGTGGGGCTCCATGCAGA 62.100 66.667 13.08 0.00 46.09 4.26
1193 1215 1.887956 GCTTGAGCCAATCCCTTGTCA 60.888 52.381 0.00 0.00 34.31 3.58
1195 1217 0.112995 TGCTTGAGCCAATCCCTTGT 59.887 50.000 0.00 0.00 41.18 3.16
1270 1292 1.228521 TGGTGGGGTTGTGATGCAG 60.229 57.895 0.00 0.00 0.00 4.41
1279 1301 0.251165 CAAAGATCGGTGGTGGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
1293 1315 3.323243 GGTAAACGAGTAGCAGCAAAGA 58.677 45.455 0.00 0.00 0.00 2.52
1312 1334 1.482593 CTCATAGACTTTGGAGGCGGT 59.517 52.381 0.00 0.00 35.43 5.68
1320 1342 3.193691 ACGTCCAGACCTCATAGACTTTG 59.806 47.826 0.00 0.00 0.00 2.77
1324 1346 1.405821 CCACGTCCAGACCTCATAGAC 59.594 57.143 0.00 0.00 0.00 2.59
1360 1382 9.296400 CTTGAGTTCAGATAAAGTAGAAGCTAC 57.704 37.037 0.00 0.00 0.00 3.58
1407 1429 2.046988 CACTGGATGCACCGCTCA 60.047 61.111 0.00 0.00 42.61 4.26
1429 1451 1.961793 CTGGTCTTTGGGTTGTCGAA 58.038 50.000 0.00 0.00 0.00 3.71
1461 1483 1.607178 CCCAATGGCAGCTTCACCA 60.607 57.895 2.49 2.49 41.06 4.17
1466 1488 0.681175 GTTGAACCCAATGGCAGCTT 59.319 50.000 0.00 0.00 34.39 3.74
1520 1542 1.278127 CCACGGGTGTCTTGGTTCTAT 59.722 52.381 0.00 0.00 0.00 1.98
1686 1708 0.940126 CTGCCAATCCGACTATGCAC 59.060 55.000 0.00 0.00 0.00 4.57
1709 1731 1.376609 GGCTATTGTGGTCTTGCCGG 61.377 60.000 0.00 0.00 41.21 6.13
1710 1732 0.676466 TGGCTATTGTGGTCTTGCCG 60.676 55.000 0.00 0.00 42.87 5.69
1741 1763 6.202226 GGTCAAACTGATCACTGAAGTTTTC 58.798 40.000 7.16 4.87 41.08 2.29
1826 1848 1.487976 CCTGTGGCATGATCTGGTAGT 59.512 52.381 0.00 0.00 0.00 2.73
1848 1870 1.273041 TGCTGCCTGGTACCTTCTCTA 60.273 52.381 14.36 0.00 0.00 2.43
1893 1915 0.623324 AGGTGCTGCCCCCAATACTA 60.623 55.000 0.00 0.00 38.26 1.82
1924 1946 6.982141 AGTTTCAACGTTTGTAGTCTATCACA 59.018 34.615 0.00 0.00 0.00 3.58
1941 1963 9.191995 TCTTTCTTGAGTTTTTGAAGTTTCAAC 57.808 29.630 6.79 0.00 45.99 3.18
2117 2139 8.792633 CCAGGACTAACTTGAATTCAAATAACA 58.207 33.333 20.82 5.20 35.15 2.41
2118 2140 9.010029 TCCAGGACTAACTTGAATTCAAATAAC 57.990 33.333 20.82 12.72 35.15 1.89
2119 2141 9.581289 TTCCAGGACTAACTTGAATTCAAATAA 57.419 29.630 20.82 8.66 35.15 1.40
2120 2142 9.581289 TTTCCAGGACTAACTTGAATTCAAATA 57.419 29.630 20.82 15.22 35.15 1.40
2121 2143 8.360390 GTTTCCAGGACTAACTTGAATTCAAAT 58.640 33.333 20.82 9.42 35.15 2.32
2122 2144 7.340743 TGTTTCCAGGACTAACTTGAATTCAAA 59.659 33.333 20.82 6.61 35.15 2.69
2123 2145 6.831353 TGTTTCCAGGACTAACTTGAATTCAA 59.169 34.615 19.45 19.45 0.00 2.69
2124 2146 6.361433 TGTTTCCAGGACTAACTTGAATTCA 58.639 36.000 3.38 3.38 0.00 2.57
2125 2147 6.568653 GCTGTTTCCAGGACTAACTTGAATTC 60.569 42.308 0.00 0.00 39.22 2.17
2126 2148 5.241728 GCTGTTTCCAGGACTAACTTGAATT 59.758 40.000 5.74 0.00 39.22 2.17
2127 2149 4.762251 GCTGTTTCCAGGACTAACTTGAAT 59.238 41.667 5.74 0.00 39.22 2.57
2128 2150 4.134563 GCTGTTTCCAGGACTAACTTGAA 58.865 43.478 5.74 0.00 39.22 2.69
2129 2151 3.496160 GGCTGTTTCCAGGACTAACTTGA 60.496 47.826 5.74 0.00 39.22 3.02
2130 2152 2.814336 GGCTGTTTCCAGGACTAACTTG 59.186 50.000 5.74 1.13 39.22 3.16
2131 2153 2.711547 AGGCTGTTTCCAGGACTAACTT 59.288 45.455 5.74 0.00 39.22 2.66
2132 2154 2.303311 GAGGCTGTTTCCAGGACTAACT 59.697 50.000 0.00 0.00 39.22 2.24
2133 2155 2.303311 AGAGGCTGTTTCCAGGACTAAC 59.697 50.000 0.00 0.00 39.22 2.34
2134 2156 2.621070 AGAGGCTGTTTCCAGGACTAA 58.379 47.619 0.00 0.00 39.22 2.24
2135 2157 2.327325 AGAGGCTGTTTCCAGGACTA 57.673 50.000 0.00 0.00 39.22 2.59
2136 2158 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2137 2159 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2138 2160 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2139 2161 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2140 2162 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2152 2174 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2153 2175 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2154 2176 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2155 2177 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2156 2178 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2157 2179 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2158 2180 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2159 2181 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2160 2182 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2161 2183 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2162 2184 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2163 2185 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2164 2186 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2165 2187 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2166 2188 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2167 2189 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2168 2190 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2169 2191 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2170 2192 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2171 2193 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2172 2194 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2173 2195 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2174 2196 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2175 2197 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2176 2198 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2177 2199 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2178 2200 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2188 2210 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2189 2211 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2190 2212 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2191 2213 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2192 2214 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2193 2215 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2194 2216 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2195 2217 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2196 2218 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2197 2219 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2198 2220 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2199 2221 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2200 2222 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2201 2223 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2202 2224 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2203 2225 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2204 2226 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2205 2227 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2206 2228 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2218 2240 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2221 2243 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2222 2244 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2223 2245 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2224 2246 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2230 2252 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2231 2253 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2232 2254 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2233 2255 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2234 2256 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2418 2440 6.737720 ATCAGCTCCAACATATCAGTAGAA 57.262 37.500 0.00 0.00 0.00 2.10
2481 2503 3.818773 CCTGGAACCTTGACGTAACAATT 59.181 43.478 0.00 0.00 0.00 2.32
2567 2589 9.669353 CCATAAATAATTCTTCAGATTTGTCCG 57.331 33.333 0.00 0.00 0.00 4.79
2724 2746 8.463930 AAACTTGTTTCCAGTCAGAAATATGA 57.536 30.769 0.00 0.00 38.01 2.15
3112 3134 1.898574 GGCCACCAACCACAGTGAG 60.899 63.158 0.62 0.00 36.01 3.51
3360 3382 4.949856 AGGTGCTTGAGAAGAAAAAGTTCA 59.050 37.500 0.00 0.00 36.09 3.18
3566 3588 8.821686 TTTTATTGGCTTCTTCTTCATATCCA 57.178 30.769 0.00 0.00 0.00 3.41
3649 3671 1.078848 GCTTGGTCAGCTGACGGAT 60.079 57.895 34.28 0.00 46.27 4.18
3738 3760 5.220548 CGAGTAGCCACAAAGATCTTCAATG 60.221 44.000 8.78 6.25 0.00 2.82
3837 3859 2.559668 CAGCTCAAGGGCATTCAGAAAA 59.440 45.455 0.00 0.00 34.17 2.29
4057 4079 2.169352 GCTCCAAGTGAAGCTGGATCTA 59.831 50.000 0.00 0.00 0.00 1.98
4077 4099 6.656270 TGATCATCATGGTAATGTTAGGATGC 59.344 38.462 0.00 0.00 35.15 3.91
4119 4141 4.551388 GAAGAAGCTTCAGACTCTCGAAA 58.449 43.478 27.57 0.00 0.00 3.46
4215 4237 1.602920 CCCTCAAAAGCAAAGAACCGC 60.603 52.381 0.00 0.00 0.00 5.68
4290 4312 3.244770 TGGTACCCTGACTTCCATTGTTC 60.245 47.826 10.07 0.00 0.00 3.18
4345 4367 1.075212 TGGTCCATTCTCACATTGCCA 59.925 47.619 0.00 0.00 0.00 4.92
4377 4399 4.552674 TGCCTACCTAATGGTACTGATCA 58.447 43.478 0.00 0.00 46.43 2.92
4471 4495 5.947503 TGAGAAGCAAAATTTTGTCAACG 57.052 34.783 27.13 6.12 40.24 4.10
4487 4511 4.316645 CATCCATAGGCACTGATGAGAAG 58.683 47.826 0.00 0.00 38.25 2.85
4500 4524 1.226686 GCTGAGCACGCATCCATAGG 61.227 60.000 0.00 0.00 0.00 2.57
4520 4544 4.163458 TGGTTCACTCAGTTGTAGTTCCTT 59.837 41.667 0.00 0.00 0.00 3.36
4670 4694 1.398390 CATACGGACAAGGCAAGAAGC 59.602 52.381 0.00 0.00 44.65 3.86
4671 4695 2.932614 CTCATACGGACAAGGCAAGAAG 59.067 50.000 0.00 0.00 0.00 2.85
4672 4696 2.935238 GCTCATACGGACAAGGCAAGAA 60.935 50.000 0.00 0.00 0.00 2.52
4673 4697 1.405526 GCTCATACGGACAAGGCAAGA 60.406 52.381 0.00 0.00 0.00 3.02
4674 4698 1.009829 GCTCATACGGACAAGGCAAG 58.990 55.000 0.00 0.00 0.00 4.01
4675 4699 0.613260 AGCTCATACGGACAAGGCAA 59.387 50.000 0.00 0.00 0.00 4.52
4676 4700 0.613260 AAGCTCATACGGACAAGGCA 59.387 50.000 0.00 0.00 0.00 4.75
4703 4727 2.276201 TCATTATCAAGAACCGCACGG 58.724 47.619 7.71 7.71 42.03 4.94
4704 4728 4.335082 TTTCATTATCAAGAACCGCACG 57.665 40.909 0.00 0.00 0.00 5.34
4705 4729 7.247728 TGTATTTTCATTATCAAGAACCGCAC 58.752 34.615 0.00 0.00 0.00 5.34
4707 4731 6.912591 CCTGTATTTTCATTATCAAGAACCGC 59.087 38.462 0.00 0.00 0.00 5.68
4708 4732 6.912591 GCCTGTATTTTCATTATCAAGAACCG 59.087 38.462 0.00 0.00 0.00 4.44
4751 4775 8.591940 TCCTAAGTAAAAGAAGTTACTTCCTCC 58.408 37.037 20.05 5.79 46.54 4.30
4752 4776 9.642327 CTCCTAAGTAAAAGAAGTTACTTCCTC 57.358 37.037 20.05 7.70 46.54 3.71
4753 4777 8.595421 CCTCCTAAGTAAAAGAAGTTACTTCCT 58.405 37.037 20.05 5.94 46.54 3.36
4754 4778 8.591940 TCCTCCTAAGTAAAAGAAGTTACTTCC 58.408 37.037 20.05 5.93 46.54 3.46
4778 4805 0.109597 CAGCAAACGCCACATTCTCC 60.110 55.000 0.00 0.00 0.00 3.71
4790 4817 1.740025 GGCACTACCTCATCAGCAAAC 59.260 52.381 0.00 0.00 34.51 2.93
4797 4824 3.493350 CCACACTATGGCACTACCTCATC 60.493 52.174 0.00 0.00 43.24 2.92
4835 4862 6.364165 CACCATGCAACTAAGAACAAAATCTG 59.636 38.462 0.00 0.00 0.00 2.90
4836 4863 6.040842 ACACCATGCAACTAAGAACAAAATCT 59.959 34.615 0.00 0.00 0.00 2.40
4900 4927 5.053145 CAGCTGTTGTATCCCTTCTCATAC 58.947 45.833 5.25 0.00 0.00 2.39
4912 4939 7.693969 AATTCTCTAAAAGCAGCTGTTGTAT 57.306 32.000 16.64 1.94 0.00 2.29
4957 4984 3.854666 TGCTGTTCTATTCTGAGAGCAC 58.145 45.455 0.00 0.00 33.64 4.40
4974 5001 4.008330 ACTCTGTTTTGATCCATCTGCTG 58.992 43.478 0.00 0.00 0.00 4.41
4986 5013 8.490355 GGAAATCAAGCATTTTACTCTGTTTTG 58.510 33.333 0.00 0.00 34.60 2.44
4987 5014 7.657354 GGGAAATCAAGCATTTTACTCTGTTTT 59.343 33.333 0.00 0.00 34.60 2.43
5011 5038 0.607620 TTCTTTACGGTACCACGGGG 59.392 55.000 13.54 0.00 38.39 5.73
5032 5059 6.201517 CAGTCATCAAATTAATTACCTGCGG 58.798 40.000 0.01 0.00 0.00 5.69
5033 5060 6.183360 ACCAGTCATCAAATTAATTACCTGCG 60.183 38.462 0.01 0.00 0.00 5.18
5045 5072 2.093869 GCCATGCAACCAGTCATCAAAT 60.094 45.455 0.00 0.00 0.00 2.32
5055 5082 2.492881 CAACATCTAAGCCATGCAACCA 59.507 45.455 0.00 0.00 0.00 3.67
5061 5088 3.084039 ACACCACAACATCTAAGCCATG 58.916 45.455 0.00 0.00 0.00 3.66
5062 5089 3.084039 CACACCACAACATCTAAGCCAT 58.916 45.455 0.00 0.00 0.00 4.40
5063 5090 2.503331 CACACCACAACATCTAAGCCA 58.497 47.619 0.00 0.00 0.00 4.75
5064 5091 1.812571 CCACACCACAACATCTAAGCC 59.187 52.381 0.00 0.00 0.00 4.35
5065 5092 1.200020 GCCACACCACAACATCTAAGC 59.800 52.381 0.00 0.00 0.00 3.09
5066 5093 2.503331 TGCCACACCACAACATCTAAG 58.497 47.619 0.00 0.00 0.00 2.18
5067 5094 2.647683 TGCCACACCACAACATCTAA 57.352 45.000 0.00 0.00 0.00 2.10
5068 5095 2.647683 TTGCCACACCACAACATCTA 57.352 45.000 0.00 0.00 0.00 1.98
5069 5096 1.888512 GATTGCCACACCACAACATCT 59.111 47.619 0.00 0.00 0.00 2.90
5070 5097 1.401409 CGATTGCCACACCACAACATC 60.401 52.381 0.00 0.00 0.00 3.06
5071 5098 0.597568 CGATTGCCACACCACAACAT 59.402 50.000 0.00 0.00 0.00 2.71
5072 5099 2.028936 CGATTGCCACACCACAACA 58.971 52.632 0.00 0.00 0.00 3.33
5073 5100 1.371635 GCGATTGCCACACCACAAC 60.372 57.895 0.00 0.00 33.98 3.32
5074 5101 3.038280 GCGATTGCCACACCACAA 58.962 55.556 0.00 0.00 33.98 3.33
5096 5123 5.009631 CAGGAAAATAGGAATGGTCACACA 58.990 41.667 0.00 0.00 0.00 3.72
5101 5128 5.196695 AGAAGCAGGAAAATAGGAATGGTC 58.803 41.667 0.00 0.00 0.00 4.02
5126 5153 1.943116 AACACCAAAACAGCAGCGCA 61.943 50.000 11.47 0.00 0.00 6.09
5127 5154 1.226945 AACACCAAAACAGCAGCGC 60.227 52.632 0.00 0.00 0.00 5.92
5129 5156 0.459489 TCCAACACCAAAACAGCAGC 59.541 50.000 0.00 0.00 0.00 5.25
5130 5157 3.068590 AGAATCCAACACCAAAACAGCAG 59.931 43.478 0.00 0.00 0.00 4.24
5131 5158 3.030291 AGAATCCAACACCAAAACAGCA 58.970 40.909 0.00 0.00 0.00 4.41
5132 5159 3.733443 AGAATCCAACACCAAAACAGC 57.267 42.857 0.00 0.00 0.00 4.40
5133 5160 5.261209 TCAAGAATCCAACACCAAAACAG 57.739 39.130 0.00 0.00 0.00 3.16
5175 5202 1.588082 CAATGGGCAGCCTGTGAAC 59.412 57.895 12.43 0.00 0.00 3.18
5207 5234 8.099364 ACATTAACAAGTATCAACAAGGACAG 57.901 34.615 0.00 0.00 0.00 3.51
5211 5238 9.825972 CACTAACATTAACAAGTATCAACAAGG 57.174 33.333 0.00 0.00 0.00 3.61
5228 5255 9.116067 GAGAGAGAGTACAGATACACTAACATT 57.884 37.037 0.00 0.00 32.96 2.71
5229 5256 8.268605 TGAGAGAGAGTACAGATACACTAACAT 58.731 37.037 0.00 0.00 32.96 2.71
5230 5257 7.621796 TGAGAGAGAGTACAGATACACTAACA 58.378 38.462 0.00 0.00 32.96 2.41
5231 5258 8.495361 TTGAGAGAGAGTACAGATACACTAAC 57.505 38.462 0.00 0.00 32.96 2.34
5232 5259 9.516546 TTTTGAGAGAGAGTACAGATACACTAA 57.483 33.333 0.00 0.00 32.96 2.24
5233 5260 9.516546 TTTTTGAGAGAGAGTACAGATACACTA 57.483 33.333 0.00 0.00 32.96 2.74
5234 5261 8.410673 TTTTTGAGAGAGAGTACAGATACACT 57.589 34.615 0.00 0.00 35.22 3.55
5266 5293 8.946085 CAACATGTTACAGGATACACTAACATT 58.054 33.333 11.53 0.00 43.48 2.71
5267 5294 8.318412 TCAACATGTTACAGGATACACTAACAT 58.682 33.333 11.53 4.98 45.26 2.71
5268 5295 7.672240 TCAACATGTTACAGGATACACTAACA 58.328 34.615 11.53 1.11 41.89 2.41
5269 5296 8.542497 TTCAACATGTTACAGGATACACTAAC 57.458 34.615 11.53 0.00 41.41 2.34
5270 5297 9.214957 CTTTCAACATGTTACAGGATACACTAA 57.785 33.333 11.53 0.00 41.41 2.24
5271 5298 7.333423 GCTTTCAACATGTTACAGGATACACTA 59.667 37.037 11.53 0.00 41.41 2.74
5272 5299 6.149474 GCTTTCAACATGTTACAGGATACACT 59.851 38.462 11.53 0.00 41.41 3.55
5273 5300 6.072728 TGCTTTCAACATGTTACAGGATACAC 60.073 38.462 11.53 0.00 41.41 2.90
5274 5301 6.000840 TGCTTTCAACATGTTACAGGATACA 58.999 36.000 11.53 0.08 41.41 2.29
5275 5302 6.314784 GTGCTTTCAACATGTTACAGGATAC 58.685 40.000 11.53 2.38 0.00 2.24
5276 5303 5.121611 CGTGCTTTCAACATGTTACAGGATA 59.878 40.000 11.53 0.00 0.00 2.59
5277 5304 4.083324 CGTGCTTTCAACATGTTACAGGAT 60.083 41.667 11.53 0.00 0.00 3.24
5278 5305 3.249799 CGTGCTTTCAACATGTTACAGGA 59.750 43.478 11.53 5.90 0.00 3.86
5279 5306 3.003275 ACGTGCTTTCAACATGTTACAGG 59.997 43.478 11.53 11.92 33.51 4.00
5280 5307 3.968096 CACGTGCTTTCAACATGTTACAG 59.032 43.478 11.53 8.45 35.09 2.74
5281 5308 3.790456 GCACGTGCTTTCAACATGTTACA 60.790 43.478 32.55 2.28 35.09 2.41
5282 5309 2.719046 GCACGTGCTTTCAACATGTTAC 59.281 45.455 32.55 3.78 35.09 2.50
5286 5313 0.316937 ACGCACGTGCTTTCAACATG 60.317 50.000 35.27 19.91 39.32 3.21
5299 5326 1.629345 ATGCACACATCTCACGCACG 61.629 55.000 0.00 0.00 35.02 5.34
5345 5372 9.905713 AGGAACATGCAAATCTTCTTATACTAA 57.094 29.630 0.00 0.00 0.00 2.24
5349 5376 9.288576 CCATAGGAACATGCAAATCTTCTTATA 57.711 33.333 0.00 0.00 0.00 0.98
5351 5378 7.067372 CACCATAGGAACATGCAAATCTTCTTA 59.933 37.037 0.00 0.00 0.00 2.10
5363 5390 4.186926 CAGAGTGTCACCATAGGAACATG 58.813 47.826 0.00 0.00 0.00 3.21
5364 5391 3.369892 GCAGAGTGTCACCATAGGAACAT 60.370 47.826 0.00 0.00 0.00 2.71
5365 5392 2.028112 GCAGAGTGTCACCATAGGAACA 60.028 50.000 0.00 0.00 0.00 3.18
5367 5394 2.234661 CTGCAGAGTGTCACCATAGGAA 59.765 50.000 8.42 0.00 0.00 3.36
5373 5400 1.344953 AACCCTGCAGAGTGTCACCA 61.345 55.000 17.39 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.