Multiple sequence alignment - TraesCS5B01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G400100 chr5B 100.000 6730 0 0 1 6730 577341688 577348417 0.000000e+00 12429.0
1 TraesCS5B01G400100 chr5B 94.131 1329 65 9 612 1939 577335383 577336699 0.000000e+00 2010.0
2 TraesCS5B01G400100 chr5B 87.500 280 9 9 349 620 577334565 577334826 3.950000e-77 300.0
3 TraesCS5B01G400100 chr5D 94.646 1849 62 17 349 2182 469715269 469717095 0.000000e+00 2832.0
4 TraesCS5B01G400100 chr5D 92.455 1882 85 26 3925 5787 469718831 469720674 0.000000e+00 2636.0
5 TraesCS5B01G400100 chr5D 86.941 1631 125 30 2284 3901 469717149 469718704 0.000000e+00 1751.0
6 TraesCS5B01G400100 chr5D 87.310 591 65 5 6140 6730 469721271 469721851 0.000000e+00 667.0
7 TraesCS5B01G400100 chr5D 90.085 353 34 1 1 353 387731073 387730722 2.210000e-124 457.0
8 TraesCS5B01G400100 chr5D 92.424 264 13 2 5868 6131 469720671 469720927 2.960000e-98 370.0
9 TraesCS5B01G400100 chr2B 94.797 1826 73 11 3933 5750 113193850 113195661 0.000000e+00 2826.0
10 TraesCS5B01G400100 chr2B 83.054 537 83 6 6195 6730 13972852 13973381 1.310000e-131 481.0
11 TraesCS5B01G400100 chr2B 93.548 93 5 1 5785 5876 134499546 134499638 3.270000e-28 137.0
12 TraesCS5B01G400100 chr7B 94.818 1814 70 13 3933 5737 221892703 221890905 0.000000e+00 2808.0
13 TraesCS5B01G400100 chr7B 95.455 88 4 0 5785 5872 430307413 430307326 2.530000e-29 141.0
14 TraesCS5B01G400100 chr7B 91.176 102 5 4 5785 5883 315581314 315581214 1.180000e-27 135.0
15 TraesCS5B01G400100 chr3B 94.217 1833 77 13 3933 5750 492742920 492744738 0.000000e+00 2771.0
16 TraesCS5B01G400100 chr3B 93.031 574 24 9 3933 4501 622479780 622480342 0.000000e+00 824.0
17 TraesCS5B01G400100 chr3B 96.226 53 2 0 5698 5750 622480338 622480390 3.340000e-13 87.9
18 TraesCS5B01G400100 chr5A 89.756 1845 84 42 610 2376 590664177 590665994 0.000000e+00 2263.0
19 TraesCS5B01G400100 chr5A 92.356 1439 82 13 2396 3822 590666111 590667533 0.000000e+00 2023.0
20 TraesCS5B01G400100 chr5A 95.284 1251 44 7 4506 5747 590668289 590669533 0.000000e+00 1969.0
21 TraesCS5B01G400100 chr5A 89.842 571 41 12 3905 4467 590667729 590668290 0.000000e+00 717.0
22 TraesCS5B01G400100 chr5A 86.266 466 62 2 6262 6727 692177355 692177818 7.790000e-139 505.0
23 TraesCS5B01G400100 chr5A 96.552 87 3 0 5785 5871 562999151 562999237 1.960000e-30 145.0
24 TraesCS5B01G400100 chr5A 91.000 100 7 2 5785 5883 574193417 574193319 4.230000e-27 134.0
25 TraesCS5B01G400100 chr5A 97.015 67 2 0 5868 5934 590669544 590669610 5.520000e-21 113.0
26 TraesCS5B01G400100 chr6D 85.299 551 74 4 6180 6730 89358915 89358372 4.560000e-156 562.0
27 TraesCS5B01G400100 chr4D 84.783 506 73 2 6225 6730 502028216 502028717 7.790000e-139 505.0
28 TraesCS5B01G400100 chr2D 91.429 350 29 1 1 350 531927115 531927463 4.720000e-131 479.0
29 TraesCS5B01G400100 chr2D 91.143 350 29 2 1 349 554478879 554478531 2.200000e-129 473.0
30 TraesCS5B01G400100 chr2D 89.205 352 34 4 1 350 43301602 43301253 2.880000e-118 436.0
31 TraesCS5B01G400100 chr7D 91.143 350 30 1 1 350 399822463 399822811 2.200000e-129 473.0
32 TraesCS5B01G400100 chr7D 90.571 350 32 1 1 350 52711168 52710820 4.750000e-126 462.0
33 TraesCS5B01G400100 chr7D 90.149 335 29 4 1 333 403436764 403437096 3.730000e-117 433.0
34 TraesCS5B01G400100 chr4A 82.428 552 85 9 6180 6730 528603398 528603938 7.900000e-129 472.0
35 TraesCS5B01G400100 chr4A 82.246 552 86 10 6180 6730 528643371 528643911 3.680000e-127 466.0
36 TraesCS5B01G400100 chr1D 82.056 535 86 8 6193 6722 460420583 460420054 1.330000e-121 448.0
37 TraesCS5B01G400100 chr1D 88.319 351 36 5 1 349 155911440 155911093 3.750000e-112 416.0
38 TraesCS5B01G400100 chr1A 82.075 530 90 4 6201 6730 65236613 65236089 1.330000e-121 448.0
39 TraesCS5B01G400100 chr3D 88.986 345 34 4 1 344 586540770 586540429 2.240000e-114 424.0
40 TraesCS5B01G400100 chr3D 91.753 97 7 1 5782 5878 598729838 598729933 4.230000e-27 134.0
41 TraesCS5B01G400100 chr1B 77.297 370 72 11 5233 5596 561499183 561499546 2.460000e-49 207.0
42 TraesCS5B01G400100 chr2A 92.079 101 7 1 5785 5884 761433056 761432956 2.530000e-29 141.0
43 TraesCS5B01G400100 chr4B 94.382 89 5 0 5785 5873 660655071 660654983 3.270000e-28 137.0
44 TraesCS5B01G400100 chr4B 93.478 92 5 1 5781 5871 433617257 433617348 1.180000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G400100 chr5B 577341688 577348417 6729 False 12429.00 12429 100.0000 1 6730 1 chr5B.!!$F1 6729
1 TraesCS5B01G400100 chr5B 577334565 577336699 2134 False 1155.00 2010 90.8155 349 1939 2 chr5B.!!$F2 1590
2 TraesCS5B01G400100 chr5D 469715269 469721851 6582 False 1651.20 2832 90.7552 349 6730 5 chr5D.!!$F1 6381
3 TraesCS5B01G400100 chr2B 113193850 113195661 1811 False 2826.00 2826 94.7970 3933 5750 1 chr2B.!!$F2 1817
4 TraesCS5B01G400100 chr2B 13972852 13973381 529 False 481.00 481 83.0540 6195 6730 1 chr2B.!!$F1 535
5 TraesCS5B01G400100 chr7B 221890905 221892703 1798 True 2808.00 2808 94.8180 3933 5737 1 chr7B.!!$R1 1804
6 TraesCS5B01G400100 chr3B 492742920 492744738 1818 False 2771.00 2771 94.2170 3933 5750 1 chr3B.!!$F1 1817
7 TraesCS5B01G400100 chr3B 622479780 622480390 610 False 455.95 824 94.6285 3933 5750 2 chr3B.!!$F2 1817
8 TraesCS5B01G400100 chr5A 590664177 590669610 5433 False 1417.00 2263 92.8506 610 5934 5 chr5A.!!$F3 5324
9 TraesCS5B01G400100 chr6D 89358372 89358915 543 True 562.00 562 85.2990 6180 6730 1 chr6D.!!$R1 550
10 TraesCS5B01G400100 chr4D 502028216 502028717 501 False 505.00 505 84.7830 6225 6730 1 chr4D.!!$F1 505
11 TraesCS5B01G400100 chr4A 528603398 528603938 540 False 472.00 472 82.4280 6180 6730 1 chr4A.!!$F1 550
12 TraesCS5B01G400100 chr4A 528643371 528643911 540 False 466.00 466 82.2460 6180 6730 1 chr4A.!!$F2 550
13 TraesCS5B01G400100 chr1D 460420054 460420583 529 True 448.00 448 82.0560 6193 6722 1 chr1D.!!$R2 529
14 TraesCS5B01G400100 chr1A 65236089 65236613 524 True 448.00 448 82.0750 6201 6730 1 chr1A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.029035 ATCGTCACGCTGTATCGGAC 59.971 55.0 0.00 0.0 0.00 4.79 F
984 1594 0.039527 GGTCGTTTCATGGTTGCCAC 60.040 55.0 0.00 0.0 35.80 5.01 F
2120 2781 1.017387 GATCAAAACTAGCAGCGGGG 58.983 55.0 0.00 0.0 0.00 5.73 F
2459 3217 0.036388 TCTCATTTCACCACTCCCGC 60.036 55.0 0.00 0.0 0.00 6.13 F
3494 4295 0.343372 TAAGGGATCCCAGAGTGGCT 59.657 55.0 32.69 6.3 35.79 4.75 F
4123 5053 0.689055 TGATGTCACTGGCTTGCTCT 59.311 50.0 0.00 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2421 0.026285 GCGGTTGATTCGATGGTTCG 59.974 55.000 0.00 0.0 46.87 3.95 R
2239 2900 0.930310 ATGTTCAATGATCGTCGCCG 59.070 50.000 0.00 0.0 0.00 6.46 R
3921 4850 0.250858 CCAACTGTGGCCTCATGTCA 60.251 55.000 8.18 0.0 38.35 3.58 R
4433 5376 1.372087 GGAATGACAGCCGAGCCAAG 61.372 60.000 0.00 0.0 0.00 3.61 R
4550 5498 1.067985 CAACAGGTGCACACAACAACA 60.068 47.619 20.43 0.0 35.21 3.33 R
6063 7025 0.108138 AGGTACGCAAGGATCTGCAC 60.108 55.000 7.61 0.0 43.08 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.489771 CGGATGGCCTCCCACACC 62.490 72.222 3.32 0.00 45.77 4.16
24 25 3.338250 GGATGGCCTCCCACACCA 61.338 66.667 3.32 0.00 45.77 4.17
25 26 2.273449 GATGGCCTCCCACACCAG 59.727 66.667 3.32 0.00 45.77 4.00
26 27 4.052518 ATGGCCTCCCACACCAGC 62.053 66.667 3.32 0.00 45.77 4.85
30 31 3.314331 CCTCCCACACCAGCGACT 61.314 66.667 0.00 0.00 0.00 4.18
31 32 2.262915 CTCCCACACCAGCGACTC 59.737 66.667 0.00 0.00 0.00 3.36
32 33 3.302347 CTCCCACACCAGCGACTCC 62.302 68.421 0.00 0.00 0.00 3.85
33 34 4.742201 CCCACACCAGCGACTCCG 62.742 72.222 0.00 0.00 39.16 4.63
52 53 4.408821 GCTGGATCCACCACCGCA 62.409 66.667 11.44 0.00 44.64 5.69
53 54 2.124983 CTGGATCCACCACCGCAG 60.125 66.667 11.44 0.00 44.64 5.18
54 55 4.408821 TGGATCCACCACCGCAGC 62.409 66.667 11.44 0.00 44.64 5.25
55 56 4.408821 GGATCCACCACCGCAGCA 62.409 66.667 6.95 0.00 38.79 4.41
56 57 3.127533 GATCCACCACCGCAGCAC 61.128 66.667 0.00 0.00 0.00 4.40
57 58 4.722700 ATCCACCACCGCAGCACC 62.723 66.667 0.00 0.00 0.00 5.01
79 80 2.202260 CTCGTCGCGTCGTTGCTA 60.202 61.111 23.80 4.87 0.00 3.49
80 81 2.202260 TCGTCGCGTCGTTGCTAG 60.202 61.111 23.80 0.00 0.00 3.42
81 82 2.202260 CGTCGCGTCGTTGCTAGA 60.202 61.111 17.43 0.00 0.00 2.43
82 83 2.209076 CGTCGCGTCGTTGCTAGAG 61.209 63.158 17.43 0.00 0.00 2.43
83 84 1.868251 GTCGCGTCGTTGCTAGAGG 60.868 63.158 5.77 0.00 0.00 3.69
84 85 2.036571 TCGCGTCGTTGCTAGAGGA 61.037 57.895 5.77 0.00 0.00 3.71
85 86 1.583967 CGCGTCGTTGCTAGAGGAG 60.584 63.158 0.00 0.00 0.00 3.69
86 87 1.801332 GCGTCGTTGCTAGAGGAGA 59.199 57.895 0.00 0.00 0.00 3.71
87 88 0.248296 GCGTCGTTGCTAGAGGAGAG 60.248 60.000 0.00 0.00 0.00 3.20
88 89 0.378962 CGTCGTTGCTAGAGGAGAGG 59.621 60.000 0.00 0.00 0.00 3.69
89 90 1.752683 GTCGTTGCTAGAGGAGAGGA 58.247 55.000 0.00 0.00 0.00 3.71
90 91 2.093106 GTCGTTGCTAGAGGAGAGGAA 58.907 52.381 0.00 0.00 0.00 3.36
91 92 2.098443 GTCGTTGCTAGAGGAGAGGAAG 59.902 54.545 0.00 0.00 0.00 3.46
92 93 1.407258 CGTTGCTAGAGGAGAGGAAGG 59.593 57.143 0.00 0.00 0.00 3.46
93 94 1.760029 GTTGCTAGAGGAGAGGAAGGG 59.240 57.143 0.00 0.00 0.00 3.95
94 95 0.263172 TGCTAGAGGAGAGGAAGGGG 59.737 60.000 0.00 0.00 0.00 4.79
95 96 0.471022 GCTAGAGGAGAGGAAGGGGG 60.471 65.000 0.00 0.00 0.00 5.40
96 97 1.236708 CTAGAGGAGAGGAAGGGGGA 58.763 60.000 0.00 0.00 0.00 4.81
97 98 1.146982 CTAGAGGAGAGGAAGGGGGAG 59.853 61.905 0.00 0.00 0.00 4.30
98 99 1.074850 GAGGAGAGGAAGGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
99 100 2.040359 GGAGAGGAAGGGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
100 101 2.647949 GGAGAGGAAGGGGGAGGGA 61.648 68.421 0.00 0.00 0.00 4.20
101 102 1.074850 GAGAGGAAGGGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
102 103 1.550374 AGAGGAAGGGGGAGGGAGA 60.550 63.158 0.00 0.00 0.00 3.71
103 104 1.074850 GAGGAAGGGGGAGGGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
104 105 2.040359 GGAAGGGGGAGGGAGAGG 60.040 72.222 0.00 0.00 0.00 3.69
105 106 2.647949 GGAAGGGGGAGGGAGAGGA 61.648 68.421 0.00 0.00 0.00 3.71
106 107 1.074850 GAAGGGGGAGGGAGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
107 108 1.869452 AAGGGGGAGGGAGAGGAGT 60.869 63.158 0.00 0.00 0.00 3.85
108 109 1.465189 AAGGGGGAGGGAGAGGAGTT 61.465 60.000 0.00 0.00 0.00 3.01
109 110 1.383386 GGGGGAGGGAGAGGAGTTC 60.383 68.421 0.00 0.00 0.00 3.01
110 111 1.758906 GGGGAGGGAGAGGAGTTCG 60.759 68.421 0.00 0.00 0.00 3.95
111 112 1.306970 GGGAGGGAGAGGAGTTCGA 59.693 63.158 0.00 0.00 0.00 3.71
112 113 0.324460 GGGAGGGAGAGGAGTTCGAA 60.324 60.000 0.00 0.00 0.00 3.71
113 114 1.689892 GGGAGGGAGAGGAGTTCGAAT 60.690 57.143 0.00 0.00 0.00 3.34
114 115 1.410882 GGAGGGAGAGGAGTTCGAATG 59.589 57.143 0.00 0.00 0.00 2.67
115 116 2.379972 GAGGGAGAGGAGTTCGAATGA 58.620 52.381 0.00 0.00 0.00 2.57
116 117 2.761208 GAGGGAGAGGAGTTCGAATGAA 59.239 50.000 0.00 0.00 0.00 2.57
117 118 3.173965 AGGGAGAGGAGTTCGAATGAAA 58.826 45.455 0.00 0.00 35.46 2.69
118 119 3.777522 AGGGAGAGGAGTTCGAATGAAAT 59.222 43.478 0.00 0.00 35.46 2.17
119 120 4.123506 GGGAGAGGAGTTCGAATGAAATC 58.876 47.826 0.00 0.00 45.89 2.17
120 121 4.141824 GGGAGAGGAGTTCGAATGAAATCT 60.142 45.833 0.00 1.84 45.88 2.40
121 122 4.808364 GGAGAGGAGTTCGAATGAAATCTG 59.192 45.833 0.00 0.00 45.88 2.90
122 123 4.187694 AGAGGAGTTCGAATGAAATCTGC 58.812 43.478 0.00 0.00 45.88 4.26
123 124 2.932614 AGGAGTTCGAATGAAATCTGCG 59.067 45.455 0.00 0.00 45.88 5.18
124 125 2.030946 GGAGTTCGAATGAAATCTGCGG 59.969 50.000 0.00 0.00 45.88 5.69
125 126 2.009774 AGTTCGAATGAAATCTGCGGG 58.990 47.619 0.00 0.00 35.46 6.13
126 127 1.737793 GTTCGAATGAAATCTGCGGGT 59.262 47.619 0.00 0.00 35.46 5.28
127 128 1.368641 TCGAATGAAATCTGCGGGTG 58.631 50.000 0.00 0.00 0.00 4.61
128 129 0.248215 CGAATGAAATCTGCGGGTGC 60.248 55.000 0.00 0.00 43.20 5.01
148 149 3.652000 GCGGGCGGTTTCGAACAA 61.652 61.111 0.00 0.00 39.00 2.83
149 150 2.554272 CGGGCGGTTTCGAACAAG 59.446 61.111 0.00 0.00 39.00 3.16
150 151 1.957186 CGGGCGGTTTCGAACAAGA 60.957 57.895 0.00 0.00 39.00 3.02
151 152 1.572941 GGGCGGTTTCGAACAAGAC 59.427 57.895 0.00 0.00 39.00 3.01
152 153 1.203313 GGCGGTTTCGAACAAGACG 59.797 57.895 0.00 0.00 39.00 4.18
153 154 1.216941 GGCGGTTTCGAACAAGACGA 61.217 55.000 0.00 0.00 39.00 4.20
154 155 0.161024 GCGGTTTCGAACAAGACGAG 59.839 55.000 0.00 0.00 40.72 4.18
155 156 0.161024 CGGTTTCGAACAAGACGAGC 59.839 55.000 0.00 0.00 40.72 5.03
156 157 0.161024 GGTTTCGAACAAGACGAGCG 59.839 55.000 0.00 0.00 40.72 5.03
157 158 0.161024 GTTTCGAACAAGACGAGCGG 59.839 55.000 0.00 0.00 40.72 5.52
158 159 0.942410 TTTCGAACAAGACGAGCGGG 60.942 55.000 0.00 0.00 40.72 6.13
159 160 1.798234 TTCGAACAAGACGAGCGGGA 61.798 55.000 0.00 0.00 40.72 5.14
160 161 1.801913 CGAACAAGACGAGCGGGAG 60.802 63.158 0.00 0.00 0.00 4.30
161 162 1.585006 GAACAAGACGAGCGGGAGA 59.415 57.895 0.00 0.00 0.00 3.71
162 163 0.173708 GAACAAGACGAGCGGGAGAT 59.826 55.000 0.00 0.00 0.00 2.75
163 164 0.108615 AACAAGACGAGCGGGAGATG 60.109 55.000 0.00 0.00 0.00 2.90
164 165 1.880340 CAAGACGAGCGGGAGATGC 60.880 63.158 0.00 0.00 0.00 3.91
165 166 3.417275 AAGACGAGCGGGAGATGCG 62.417 63.158 0.00 0.00 37.44 4.73
166 167 4.933064 GACGAGCGGGAGATGCGG 62.933 72.222 0.00 0.00 37.44 5.69
169 170 3.224324 GAGCGGGAGATGCGGGTA 61.224 66.667 0.00 0.00 37.44 3.69
170 171 3.214250 GAGCGGGAGATGCGGGTAG 62.214 68.421 0.00 0.00 37.44 3.18
171 172 3.537874 GCGGGAGATGCGGGTAGT 61.538 66.667 0.00 0.00 0.00 2.73
172 173 3.090219 GCGGGAGATGCGGGTAGTT 62.090 63.158 0.00 0.00 0.00 2.24
173 174 1.520666 CGGGAGATGCGGGTAGTTT 59.479 57.895 0.00 0.00 0.00 2.66
174 175 0.107848 CGGGAGATGCGGGTAGTTTT 60.108 55.000 0.00 0.00 0.00 2.43
175 176 1.664873 GGGAGATGCGGGTAGTTTTC 58.335 55.000 0.00 0.00 0.00 2.29
176 177 1.287425 GGAGATGCGGGTAGTTTTCG 58.713 55.000 0.00 0.00 0.00 3.46
181 182 1.500396 GCGGGTAGTTTTCGCTTGG 59.500 57.895 0.00 0.00 45.16 3.61
182 183 0.952010 GCGGGTAGTTTTCGCTTGGA 60.952 55.000 0.00 0.00 45.16 3.53
183 184 1.515081 CGGGTAGTTTTCGCTTGGAA 58.485 50.000 0.00 0.00 0.00 3.53
184 185 2.081462 CGGGTAGTTTTCGCTTGGAAT 58.919 47.619 0.00 0.00 33.85 3.01
185 186 3.264104 CGGGTAGTTTTCGCTTGGAATA 58.736 45.455 0.00 0.00 33.85 1.75
186 187 3.685756 CGGGTAGTTTTCGCTTGGAATAA 59.314 43.478 0.00 0.00 33.85 1.40
187 188 4.154556 CGGGTAGTTTTCGCTTGGAATAAA 59.845 41.667 0.00 0.00 33.85 1.40
188 189 5.637809 GGGTAGTTTTCGCTTGGAATAAAG 58.362 41.667 0.00 0.00 33.85 1.85
189 190 5.392703 GGGTAGTTTTCGCTTGGAATAAAGG 60.393 44.000 0.00 0.00 33.85 3.11
190 191 5.182570 GGTAGTTTTCGCTTGGAATAAAGGT 59.817 40.000 0.00 0.00 33.85 3.50
191 192 5.121221 AGTTTTCGCTTGGAATAAAGGTG 57.879 39.130 0.00 0.00 33.85 4.00
192 193 3.569250 TTTCGCTTGGAATAAAGGTGC 57.431 42.857 0.00 0.00 33.85 5.01
193 194 1.459450 TCGCTTGGAATAAAGGTGCC 58.541 50.000 0.00 0.00 0.00 5.01
194 195 0.098728 CGCTTGGAATAAAGGTGCCG 59.901 55.000 0.00 0.00 0.00 5.69
195 196 0.455815 GCTTGGAATAAAGGTGCCGG 59.544 55.000 0.00 0.00 0.00 6.13
196 197 1.102978 CTTGGAATAAAGGTGCCGGG 58.897 55.000 2.18 0.00 0.00 5.73
197 198 0.968393 TTGGAATAAAGGTGCCGGGC 60.968 55.000 13.32 13.32 0.00 6.13
198 199 2.125326 GGAATAAAGGTGCCGGGCC 61.125 63.158 17.97 7.79 0.00 5.80
199 200 2.043349 AATAAAGGTGCCGGGCCC 60.043 61.111 17.97 13.57 0.00 5.80
200 201 2.847366 GAATAAAGGTGCCGGGCCCA 62.847 60.000 24.92 0.00 0.00 5.36
201 202 3.655350 ATAAAGGTGCCGGGCCCAC 62.655 63.158 24.92 14.37 0.00 4.61
231 232 4.884257 GCCTCGCGCAATCCCGTA 62.884 66.667 8.75 0.00 37.47 4.02
232 233 2.202824 CCTCGCGCAATCCCGTAA 60.203 61.111 8.75 0.00 0.00 3.18
233 234 2.522638 CCTCGCGCAATCCCGTAAC 61.523 63.158 8.75 0.00 0.00 2.50
234 235 1.807981 CTCGCGCAATCCCGTAACA 60.808 57.895 8.75 0.00 0.00 2.41
235 236 1.752501 CTCGCGCAATCCCGTAACAG 61.753 60.000 8.75 0.00 0.00 3.16
236 237 2.808958 CGCGCAATCCCGTAACAGG 61.809 63.158 8.75 0.00 0.00 4.00
237 238 3.098555 CGCAATCCCGTAACAGGC 58.901 61.111 0.00 0.00 0.00 4.85
238 239 1.743623 CGCAATCCCGTAACAGGCA 60.744 57.895 0.00 0.00 0.00 4.75
239 240 1.800681 GCAATCCCGTAACAGGCAC 59.199 57.895 0.00 0.00 0.00 5.01
240 241 0.676782 GCAATCCCGTAACAGGCACT 60.677 55.000 0.00 0.00 43.88 4.40
241 242 1.821216 CAATCCCGTAACAGGCACTT 58.179 50.000 0.00 0.00 34.60 3.16
242 243 1.468520 CAATCCCGTAACAGGCACTTG 59.531 52.381 0.00 0.00 34.60 3.16
243 244 0.035439 ATCCCGTAACAGGCACTTGG 60.035 55.000 0.00 0.00 34.60 3.61
244 245 1.072505 CCCGTAACAGGCACTTGGT 59.927 57.895 0.00 0.00 34.60 3.67
245 246 0.953960 CCCGTAACAGGCACTTGGTC 60.954 60.000 0.00 0.00 34.60 4.02
246 247 0.250124 CCGTAACAGGCACTTGGTCA 60.250 55.000 0.00 0.00 34.60 4.02
247 248 1.148310 CGTAACAGGCACTTGGTCAG 58.852 55.000 0.00 0.00 34.60 3.51
248 249 1.523758 GTAACAGGCACTTGGTCAGG 58.476 55.000 0.00 0.00 34.60 3.86
249 250 1.071699 GTAACAGGCACTTGGTCAGGA 59.928 52.381 0.00 0.00 34.60 3.86
250 251 0.179018 AACAGGCACTTGGTCAGGAC 60.179 55.000 0.00 0.00 34.60 3.85
251 252 1.056700 ACAGGCACTTGGTCAGGACT 61.057 55.000 0.00 0.00 34.60 3.85
252 253 0.109342 CAGGCACTTGGTCAGGACTT 59.891 55.000 0.00 0.00 34.60 3.01
253 254 0.109342 AGGCACTTGGTCAGGACTTG 59.891 55.000 0.00 0.00 27.25 3.16
254 255 0.179018 GGCACTTGGTCAGGACTTGT 60.179 55.000 0.00 0.00 0.00 3.16
255 256 1.230324 GCACTTGGTCAGGACTTGTC 58.770 55.000 0.00 0.00 0.00 3.18
256 257 1.502231 CACTTGGTCAGGACTTGTCG 58.498 55.000 0.00 0.00 0.00 4.35
257 258 0.249911 ACTTGGTCAGGACTTGTCGC 60.250 55.000 0.00 0.00 0.00 5.19
258 259 1.284982 CTTGGTCAGGACTTGTCGCG 61.285 60.000 0.00 0.00 0.00 5.87
259 260 3.112709 GGTCAGGACTTGTCGCGC 61.113 66.667 0.00 0.00 0.00 6.86
260 261 3.470567 GTCAGGACTTGTCGCGCG 61.471 66.667 26.76 26.76 0.00 6.86
276 277 4.907034 CGCGGGGAGATCGTCACG 62.907 72.222 0.00 8.32 0.00 4.35
278 279 3.518998 CGGGGAGATCGTCACGCT 61.519 66.667 0.00 0.00 0.00 5.07
279 280 2.105128 GGGGAGATCGTCACGCTG 59.895 66.667 0.00 0.00 0.00 5.18
280 281 2.711922 GGGGAGATCGTCACGCTGT 61.712 63.158 0.00 0.00 0.00 4.40
281 282 1.381928 GGGGAGATCGTCACGCTGTA 61.382 60.000 0.00 0.00 0.00 2.74
282 283 0.669077 GGGAGATCGTCACGCTGTAT 59.331 55.000 0.00 0.00 0.00 2.29
283 284 1.335142 GGGAGATCGTCACGCTGTATC 60.335 57.143 0.00 0.00 0.00 2.24
284 285 1.660614 GGAGATCGTCACGCTGTATCG 60.661 57.143 0.00 0.00 0.00 2.92
285 286 0.308068 AGATCGTCACGCTGTATCGG 59.692 55.000 0.00 0.00 0.00 4.18
286 287 0.306840 GATCGTCACGCTGTATCGGA 59.693 55.000 0.00 0.00 0.00 4.55
287 288 0.029035 ATCGTCACGCTGTATCGGAC 59.971 55.000 0.00 0.00 0.00 4.79
288 289 1.933041 CGTCACGCTGTATCGGACG 60.933 63.158 0.00 0.00 42.06 4.79
289 290 1.585521 GTCACGCTGTATCGGACGG 60.586 63.158 0.00 0.00 37.51 4.79
294 295 2.655364 CTGTATCGGACGGCTGCG 60.655 66.667 0.00 0.00 0.00 5.18
295 296 4.201679 TGTATCGGACGGCTGCGG 62.202 66.667 5.60 5.60 0.00 5.69
296 297 4.203076 GTATCGGACGGCTGCGGT 62.203 66.667 12.92 12.92 0.00 5.68
297 298 4.201679 TATCGGACGGCTGCGGTG 62.202 66.667 17.89 4.54 0.00 4.94
339 340 3.476646 CGCAGCTGCACGAGTCAG 61.477 66.667 36.03 15.08 42.21 3.51
340 341 2.048784 GCAGCTGCACGAGTCAGA 60.049 61.111 33.36 0.00 41.59 3.27
341 342 2.378858 GCAGCTGCACGAGTCAGAC 61.379 63.158 33.36 0.00 41.59 3.51
342 343 1.288439 CAGCTGCACGAGTCAGACT 59.712 57.895 1.46 1.46 33.54 3.24
343 344 0.319383 CAGCTGCACGAGTCAGACTT 60.319 55.000 4.05 0.00 33.54 3.01
344 345 0.390860 AGCTGCACGAGTCAGACTTT 59.609 50.000 4.05 0.00 33.54 2.66
345 346 1.613925 AGCTGCACGAGTCAGACTTTA 59.386 47.619 4.05 0.00 33.54 1.85
346 347 1.989165 GCTGCACGAGTCAGACTTTAG 59.011 52.381 4.05 2.48 33.54 1.85
347 348 2.600731 CTGCACGAGTCAGACTTTAGG 58.399 52.381 4.05 0.00 33.54 2.69
356 357 7.545965 CACGAGTCAGACTTTAGGTTTATTCAT 59.454 37.037 4.05 0.00 0.00 2.57
456 457 3.490890 GGTGACGCATTGCTCTCC 58.509 61.111 7.12 9.57 0.00 3.71
457 458 2.456119 GGTGACGCATTGCTCTCCG 61.456 63.158 7.12 0.00 0.00 4.63
458 459 2.815211 TGACGCATTGCTCTCCGC 60.815 61.111 7.12 0.00 39.77 5.54
489 490 2.048222 CGCACACCACGACCTGAT 60.048 61.111 0.00 0.00 0.00 2.90
881 1484 1.099689 CCTCTCTCTTCGACCTCCAC 58.900 60.000 0.00 0.00 0.00 4.02
984 1594 0.039527 GGTCGTTTCATGGTTGCCAC 60.040 55.000 0.00 0.00 35.80 5.01
1030 1640 3.024356 TCTCCTCCCTCCGCTCCT 61.024 66.667 0.00 0.00 0.00 3.69
1041 1651 1.807573 CCGCTCCTTCTTCACGAGC 60.808 63.158 0.00 0.00 44.48 5.03
1422 2042 3.984732 GCCCTGGCTTTGGACCCT 61.985 66.667 0.00 0.00 38.26 4.34
1790 2421 2.726821 TCACCATGGAAATCAAGCTCC 58.273 47.619 21.47 0.00 0.00 4.70
1900 2542 2.232452 CTGGTTCCTAGACAGACCACAG 59.768 54.545 0.00 0.00 37.26 3.66
1980 2634 4.012374 CACCAGCCAGTTCATCTGTAAAT 58.988 43.478 0.00 0.00 42.19 1.40
2120 2781 1.017387 GATCAAAACTAGCAGCGGGG 58.983 55.000 0.00 0.00 0.00 5.73
2156 2817 1.445731 CGCTTACGCTTACGGAATACG 59.554 52.381 1.68 1.68 42.43 3.06
2184 2845 1.961277 CGGATGGTTAGCGGGATGC 60.961 63.158 0.00 0.00 46.98 3.91
2289 2950 5.711976 AGGGAAATAACAAGGACAATGACAG 59.288 40.000 0.00 0.00 0.00 3.51
2290 2951 5.710099 GGGAAATAACAAGGACAATGACAGA 59.290 40.000 0.00 0.00 0.00 3.41
2292 2953 7.253422 GGAAATAACAAGGACAATGACAGATG 58.747 38.462 0.00 0.00 0.00 2.90
2311 2972 5.348179 CAGATGAATTATGCGTCCTGATCTC 59.652 44.000 0.00 0.00 0.00 2.75
2312 2973 4.670896 TGAATTATGCGTCCTGATCTCA 57.329 40.909 0.00 0.00 0.00 3.27
2313 2974 5.219343 TGAATTATGCGTCCTGATCTCAT 57.781 39.130 0.00 0.00 0.00 2.90
2314 2975 5.233225 TGAATTATGCGTCCTGATCTCATC 58.767 41.667 0.00 0.00 0.00 2.92
2315 2976 5.011431 TGAATTATGCGTCCTGATCTCATCT 59.989 40.000 0.00 0.00 0.00 2.90
2383 3044 1.153745 GCAGCAAGGAGACGACGAT 60.154 57.895 0.00 0.00 0.00 3.73
2384 3045 1.142778 GCAGCAAGGAGACGACGATC 61.143 60.000 0.00 0.00 0.00 3.69
2385 3046 0.863538 CAGCAAGGAGACGACGATCG 60.864 60.000 14.88 14.88 46.93 3.69
2403 3161 5.009710 ACGATCGAGCATTATTTAGAGGTGA 59.990 40.000 24.34 0.00 0.00 4.02
2458 3216 2.169352 AGATCTCATTTCACCACTCCCG 59.831 50.000 0.00 0.00 0.00 5.14
2459 3217 0.036388 TCTCATTTCACCACTCCCGC 60.036 55.000 0.00 0.00 0.00 6.13
2529 3287 6.806388 AATTATTTACCGGTCTTTGTCGTT 57.194 33.333 12.40 0.00 0.00 3.85
2568 3326 4.499040 GTCATTCTTGGTTTTTGTCGTGTG 59.501 41.667 0.00 0.00 0.00 3.82
2592 3350 7.012138 GTGATATTGAGTGCATGTTCATTCTCT 59.988 37.037 0.00 1.07 0.00 3.10
2593 3351 5.814764 ATTGAGTGCATGTTCATTCTCTC 57.185 39.130 0.00 7.27 0.00 3.20
2598 3356 6.128090 TGAGTGCATGTTCATTCTCTCATTTC 60.128 38.462 11.04 0.00 0.00 2.17
2647 3406 1.513586 GCGTTCGACGTGGAGTAGG 60.514 63.158 0.00 0.00 44.73 3.18
2695 3481 5.863935 GGCCACAAAATGTTATTTCTGTCTC 59.136 40.000 0.00 0.00 0.00 3.36
2696 3482 6.294731 GGCCACAAAATGTTATTTCTGTCTCT 60.295 38.462 0.00 0.00 0.00 3.10
2697 3483 7.147976 GCCACAAAATGTTATTTCTGTCTCTT 58.852 34.615 0.00 0.00 0.00 2.85
2698 3484 7.653311 GCCACAAAATGTTATTTCTGTCTCTTT 59.347 33.333 0.00 0.00 0.00 2.52
2699 3485 9.533253 CCACAAAATGTTATTTCTGTCTCTTTT 57.467 29.630 0.00 0.00 0.00 2.27
2771 3557 8.405531 TGAAAGGTGAAGAGAAGTTATTGTTTG 58.594 33.333 0.00 0.00 0.00 2.93
2836 3622 6.861065 TCTTTGTCTTTACTTGCTTACCTG 57.139 37.500 0.00 0.00 0.00 4.00
2966 3753 5.556355 AATATGCTTATGATCATGGTGCG 57.444 39.130 18.72 3.26 0.00 5.34
3024 3811 7.014134 TGTGTTGAAGATTTATTCTTGAAGGCA 59.986 33.333 0.00 0.00 44.88 4.75
3047 3834 8.502387 GGCAAATAGAGAAACTATCATAAGCTG 58.498 37.037 0.00 0.00 40.49 4.24
3062 3849 6.291377 TCATAAGCTGCCGAAGATAGAATTT 58.709 36.000 0.00 0.00 0.00 1.82
3096 3883 0.447801 CTGTGCGGCAATACTTCCAC 59.552 55.000 3.23 0.00 0.00 4.02
3131 3923 6.724263 TGTGTGTAGTGAAAAAGTAGCAATG 58.276 36.000 0.00 0.00 0.00 2.82
3270 4071 8.268850 AGCAAGTTAAAGTTATCATGACGATT 57.731 30.769 0.00 0.00 35.39 3.34
3300 4101 7.134163 TGCTCATATTCGTATTGCAATTTCTG 58.866 34.615 18.75 5.47 0.00 3.02
3428 4229 7.876936 ATTTCATTGCTTCTCATGTGAGTAT 57.123 32.000 9.65 0.00 42.60 2.12
3443 4244 6.485830 TGTGAGTATTCCCTCTTCCATTAG 57.514 41.667 0.00 0.00 32.50 1.73
3444 4245 5.964477 TGTGAGTATTCCCTCTTCCATTAGT 59.036 40.000 0.00 0.00 32.50 2.24
3447 4248 8.652290 GTGAGTATTCCCTCTTCCATTAGTTAT 58.348 37.037 0.00 0.00 32.50 1.89
3450 4251 9.853177 AGTATTCCCTCTTCCATTAGTTATTTG 57.147 33.333 0.00 0.00 0.00 2.32
3493 4294 1.349357 GATAAGGGATCCCAGAGTGGC 59.651 57.143 32.69 10.97 35.79 5.01
3494 4295 0.343372 TAAGGGATCCCAGAGTGGCT 59.657 55.000 32.69 6.30 35.79 4.75
3495 4296 0.985490 AAGGGATCCCAGAGTGGCTC 60.985 60.000 32.69 1.04 35.79 4.70
3496 4297 2.801631 GGGATCCCAGAGTGGCTCG 61.802 68.421 26.95 0.00 35.79 5.03
3497 4298 2.060980 GGATCCCAGAGTGGCTCGT 61.061 63.158 0.00 0.00 35.79 4.18
3498 4299 1.142748 GATCCCAGAGTGGCTCGTG 59.857 63.158 0.00 0.00 35.79 4.35
3499 4300 1.608717 GATCCCAGAGTGGCTCGTGT 61.609 60.000 0.00 0.00 35.79 4.49
3508 4309 4.929808 CAGAGTGGCTCGTGTACTTTTATT 59.070 41.667 0.00 0.00 35.36 1.40
3509 4310 4.929808 AGAGTGGCTCGTGTACTTTTATTG 59.070 41.667 0.00 0.00 35.36 1.90
3515 4316 3.741249 TCGTGTACTTTTATTGGGTGCA 58.259 40.909 0.00 0.00 0.00 4.57
3559 4360 5.441500 TCTGGTTGTTAGTTTGGTCAATGA 58.558 37.500 0.00 0.00 0.00 2.57
3563 4364 6.097554 TGGTTGTTAGTTTGGTCAATGATGTT 59.902 34.615 0.00 0.00 0.00 2.71
3568 4369 7.284261 TGTTAGTTTGGTCAATGATGTTTCTGA 59.716 33.333 0.00 0.00 0.00 3.27
3578 4379 7.271223 GTCAATGATGTTTCTGAATTTACACCG 59.729 37.037 0.00 0.00 0.00 4.94
3583 4384 2.851263 TCTGAATTTACACCGCACCT 57.149 45.000 0.00 0.00 0.00 4.00
3584 4385 3.965379 TCTGAATTTACACCGCACCTA 57.035 42.857 0.00 0.00 0.00 3.08
3618 4419 6.664428 TTTCTAAGAAAATCAAGGGTTGGG 57.336 37.500 0.00 0.00 0.00 4.12
3624 4425 2.292828 AATCAAGGGTTGGGTCACAG 57.707 50.000 0.00 0.00 0.00 3.66
3653 4454 3.942130 AACAGTCCTGCTTAAATTGCC 57.058 42.857 0.00 0.00 0.00 4.52
3660 4461 5.591877 AGTCCTGCTTAAATTGCCTATGAAG 59.408 40.000 0.00 0.00 0.00 3.02
3682 4483 6.432403 AGCAATAATTGTTTCAAGGGGAAA 57.568 33.333 0.00 0.00 43.07 3.13
3699 4500 3.306019 GGGAAATACCAAACTGTTGCTGG 60.306 47.826 9.22 9.22 41.20 4.85
3705 4506 3.766545 ACCAAACTGTTGCTGGTGATAT 58.233 40.909 14.45 0.00 41.95 1.63
3707 4508 5.321102 ACCAAACTGTTGCTGGTGATATTA 58.679 37.500 14.45 0.00 41.95 0.98
3715 4516 8.806146 ACTGTTGCTGGTGATATTAGAAAATTT 58.194 29.630 0.00 0.00 0.00 1.82
3782 4583 6.131264 TCCATATCAATGCTGAACAGGAAAT 58.869 36.000 0.00 0.00 34.49 2.17
3798 4599 6.179504 CAGGAAATCTGTTCAGACAATCAG 57.820 41.667 4.58 0.00 38.64 2.90
3799 4600 5.704515 CAGGAAATCTGTTCAGACAATCAGT 59.295 40.000 4.58 0.00 38.64 3.41
3812 4613 7.389232 TCAGACAATCAGTTCTATCATGTTGT 58.611 34.615 0.00 0.00 0.00 3.32
3815 4616 7.879677 AGACAATCAGTTCTATCATGTTGTTGA 59.120 33.333 0.00 0.00 0.00 3.18
3816 4617 8.394971 ACAATCAGTTCTATCATGTTGTTGAA 57.605 30.769 0.00 0.00 0.00 2.69
3817 4618 9.017509 ACAATCAGTTCTATCATGTTGTTGAAT 57.982 29.630 0.00 0.00 0.00 2.57
3818 4619 9.285770 CAATCAGTTCTATCATGTTGTTGAATG 57.714 33.333 0.00 0.00 0.00 2.67
3819 4620 6.845302 TCAGTTCTATCATGTTGTTGAATGC 58.155 36.000 0.00 0.00 0.00 3.56
3822 4623 5.823209 TCTATCATGTTGTTGAATGCTGG 57.177 39.130 0.00 0.00 0.00 4.85
3834 4655 7.283625 TGTTGAATGCTGGTTACATAAAAGT 57.716 32.000 0.00 0.00 0.00 2.66
3840 4661 6.302535 TGCTGGTTACATAAAAGTAGGCTA 57.697 37.500 0.00 0.00 0.00 3.93
3849 4670 6.827727 ACATAAAAGTAGGCTATTGGTCGAT 58.172 36.000 0.00 0.00 0.00 3.59
3869 4690 7.219484 TCGATAGATCAATATGCAGAACAGA 57.781 36.000 0.00 0.00 42.67 3.41
3901 4722 7.573968 AAGGAAGTAGGATGCACATTAAATC 57.426 36.000 0.00 0.00 0.00 2.17
3902 4723 6.064717 AGGAAGTAGGATGCACATTAAATCC 58.935 40.000 0.00 0.00 40.24 3.01
3913 4842 4.020662 GCACATTAAATCCCCTTTGTGGAA 60.021 41.667 0.00 0.00 38.35 3.53
3919 4848 5.745312 AAATCCCCTTTGTGGAATTTCTC 57.255 39.130 0.00 0.00 38.35 2.87
3920 4849 3.893753 TCCCCTTTGTGGAATTTCTCA 57.106 42.857 0.00 0.00 38.35 3.27
3921 4850 4.402616 TCCCCTTTGTGGAATTTCTCAT 57.597 40.909 0.00 0.00 38.35 2.90
3922 4851 4.088634 TCCCCTTTGTGGAATTTCTCATG 58.911 43.478 0.00 0.00 38.35 3.07
3923 4852 4.088634 CCCCTTTGTGGAATTTCTCATGA 58.911 43.478 0.00 0.00 38.35 3.07
3987 4916 9.831737 CATGCTAAATTATTATAGGCAGTGTTC 57.168 33.333 0.00 0.00 0.00 3.18
4123 5053 0.689055 TGATGTCACTGGCTTGCTCT 59.311 50.000 0.00 0.00 0.00 4.09
4144 5074 5.869579 TCTAAGGAGATGTGCTTTCACTTT 58.130 37.500 0.99 0.00 43.49 2.66
4218 5155 1.336440 CAGTCAACAAAATGTGCCGGA 59.664 47.619 5.05 0.00 0.00 5.14
4433 5376 7.772332 ACTTGAATATCTGAATGTTCGGTAC 57.228 36.000 1.82 0.00 36.18 3.34
4435 5378 8.041323 ACTTGAATATCTGAATGTTCGGTACTT 58.959 33.333 1.82 0.00 36.18 2.24
4453 5396 2.514824 GGCTCGGCTGTCATTCCC 60.515 66.667 0.00 0.00 0.00 3.97
4465 5408 5.297547 GCTGTCATTCCCGTTATCATTCTA 58.702 41.667 0.00 0.00 0.00 2.10
4467 5410 6.091441 GCTGTCATTCCCGTTATCATTCTATC 59.909 42.308 0.00 0.00 0.00 2.08
4543 5491 8.405531 TCTTAGTTCAGAAAAACAATGGTTCTG 58.594 33.333 13.80 13.80 46.29 3.02
4565 5513 1.135915 TCCATTGTTGTTGTGTGCACC 59.864 47.619 15.69 6.37 0.00 5.01
4569 5517 1.252175 TGTTGTTGTGTGCACCTGTT 58.748 45.000 15.69 0.00 0.00 3.16
4571 5519 1.067915 GTTGTTGTGTGCACCTGTTGT 60.068 47.619 15.69 0.00 0.00 3.32
4572 5520 0.808125 TGTTGTGTGCACCTGTTGTC 59.192 50.000 15.69 0.00 0.00 3.18
4587 5535 7.309194 GCACCTGTTGTCTTATTAATTGTTCCT 60.309 37.037 0.00 0.00 0.00 3.36
4659 5613 2.029020 TGCTCGCTTATTGTCTCACACT 60.029 45.455 0.00 0.00 0.00 3.55
4663 5617 4.377021 TCGCTTATTGTCTCACACTGTTT 58.623 39.130 0.00 0.00 0.00 2.83
4666 5620 5.176774 CGCTTATTGTCTCACACTGTTTGTA 59.823 40.000 0.00 0.00 35.67 2.41
4673 5627 6.287525 TGTCTCACACTGTTTGTATGAATCA 58.712 36.000 0.00 0.00 35.67 2.57
4675 5629 7.072030 GTCTCACACTGTTTGTATGAATCAAC 58.928 38.462 0.00 0.00 35.67 3.18
4817 5771 1.168714 GAAGTGCCGCCAATCTTTCT 58.831 50.000 0.00 0.00 0.00 2.52
4818 5772 0.883833 AAGTGCCGCCAATCTTTCTG 59.116 50.000 0.00 0.00 0.00 3.02
4819 5773 1.153958 GTGCCGCCAATCTTTCTGC 60.154 57.895 0.00 0.00 0.00 4.26
4867 5826 4.008330 AGCTAGCGTCAGTTACTTCAGTA 58.992 43.478 9.55 0.00 0.00 2.74
4870 5832 5.805994 GCTAGCGTCAGTTACTTCAGTAATT 59.194 40.000 0.00 0.00 41.85 1.40
5144 6106 3.052082 CTGGTGAAGCAGGTGCCG 61.052 66.667 0.00 0.00 43.38 5.69
5183 6145 2.101415 CGAGCTGATCCTGGACAACATA 59.899 50.000 0.00 0.00 0.00 2.29
5195 6157 0.810031 ACAACATATGCGACCGGCTC 60.810 55.000 0.00 0.00 44.05 4.70
5755 6717 3.849951 CCGATCGGGTGAGTGGGG 61.850 72.222 26.95 0.00 0.00 4.96
5756 6718 3.849951 CGATCGGGTGAGTGGGGG 61.850 72.222 7.38 0.00 0.00 5.40
5787 6749 2.305927 CAGAGGGACCATGGTTTGTACT 59.694 50.000 20.85 12.64 0.00 2.73
5788 6750 2.572104 AGAGGGACCATGGTTTGTACTC 59.428 50.000 20.85 19.76 0.00 2.59
5789 6751 1.633945 AGGGACCATGGTTTGTACTCC 59.366 52.381 20.85 13.38 0.00 3.85
5790 6752 1.340697 GGGACCATGGTTTGTACTCCC 60.341 57.143 20.85 18.77 0.00 4.30
5791 6753 1.633945 GGACCATGGTTTGTACTCCCT 59.366 52.381 20.85 0.00 0.00 4.20
5792 6754 2.355818 GGACCATGGTTTGTACTCCCTC 60.356 54.545 20.85 0.61 0.00 4.30
5793 6755 1.633945 ACCATGGTTTGTACTCCCTCC 59.366 52.381 13.00 0.00 0.00 4.30
5794 6756 1.633432 CCATGGTTTGTACTCCCTCCA 59.367 52.381 2.57 0.00 0.00 3.86
5795 6757 2.242196 CCATGGTTTGTACTCCCTCCAT 59.758 50.000 2.57 0.00 36.30 3.41
5796 6758 3.309121 CCATGGTTTGTACTCCCTCCATT 60.309 47.826 2.57 0.00 34.07 3.16
5797 6759 4.344104 CATGGTTTGTACTCCCTCCATTT 58.656 43.478 0.00 0.00 34.07 2.32
5798 6760 4.028993 TGGTTTGTACTCCCTCCATTTC 57.971 45.455 0.00 0.00 0.00 2.17
5799 6761 3.396276 TGGTTTGTACTCCCTCCATTTCA 59.604 43.478 0.00 0.00 0.00 2.69
5800 6762 4.141135 TGGTTTGTACTCCCTCCATTTCAA 60.141 41.667 0.00 0.00 0.00 2.69
5801 6763 4.830600 GGTTTGTACTCCCTCCATTTCAAA 59.169 41.667 0.00 0.00 0.00 2.69
5802 6764 5.303333 GGTTTGTACTCCCTCCATTTCAAAA 59.697 40.000 0.00 0.00 0.00 2.44
5803 6765 6.014584 GGTTTGTACTCCCTCCATTTCAAAAT 60.015 38.462 0.00 0.00 0.00 1.82
5804 6766 7.177744 GGTTTGTACTCCCTCCATTTCAAAATA 59.822 37.037 0.00 0.00 0.00 1.40
5805 6767 7.938140 TTGTACTCCCTCCATTTCAAAATAG 57.062 36.000 0.00 0.00 0.00 1.73
5806 6768 7.265599 TGTACTCCCTCCATTTCAAAATAGA 57.734 36.000 0.00 0.00 0.00 1.98
5807 6769 7.872138 TGTACTCCCTCCATTTCAAAATAGAT 58.128 34.615 0.00 0.00 0.00 1.98
5808 6770 7.775093 TGTACTCCCTCCATTTCAAAATAGATG 59.225 37.037 0.00 0.00 0.00 2.90
5809 6771 6.973642 ACTCCCTCCATTTCAAAATAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
5810 6772 6.830838 ACTCCCTCCATTTCAAAATAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
5811 6773 6.129179 TCCCTCCATTTCAAAATAGATGACC 58.871 40.000 0.00 0.00 0.00 4.02
5812 6774 5.302823 CCCTCCATTTCAAAATAGATGACCC 59.697 44.000 0.00 0.00 0.00 4.46
5813 6775 5.893255 CCTCCATTTCAAAATAGATGACCCA 59.107 40.000 0.00 0.00 0.00 4.51
5814 6776 6.380846 CCTCCATTTCAAAATAGATGACCCAA 59.619 38.462 0.00 0.00 0.00 4.12
5815 6777 7.169158 TCCATTTCAAAATAGATGACCCAAC 57.831 36.000 0.00 0.00 0.00 3.77
5816 6778 6.953520 TCCATTTCAAAATAGATGACCCAACT 59.046 34.615 0.00 0.00 0.00 3.16
5817 6779 7.454380 TCCATTTCAAAATAGATGACCCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
5818 6780 8.096414 CCATTTCAAAATAGATGACCCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
5830 6792 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
5831 6793 7.989416 TGACCCAACTTTATACTAACTTTGG 57.011 36.000 0.00 0.00 33.25 3.28
5832 6794 7.519927 TGACCCAACTTTATACTAACTTTGGT 58.480 34.615 0.00 0.00 31.82 3.67
5833 6795 8.658619 TGACCCAACTTTATACTAACTTTGGTA 58.341 33.333 0.00 0.00 31.82 3.25
5834 6796 8.853077 ACCCAACTTTATACTAACTTTGGTAC 57.147 34.615 0.00 0.00 31.82 3.34
5835 6797 8.439172 ACCCAACTTTATACTAACTTTGGTACA 58.561 33.333 0.00 0.00 31.82 2.90
5854 6816 8.429237 TGGTACAAAATTGGGTCATCTATTTT 57.571 30.769 0.00 0.00 31.92 1.82
5855 6817 8.310382 TGGTACAAAATTGGGTCATCTATTTTG 58.690 33.333 16.57 16.57 46.06 2.44
5856 6818 7.763985 GGTACAAAATTGGGTCATCTATTTTGG 59.236 37.037 19.76 9.08 45.43 3.28
5857 6819 7.552050 ACAAAATTGGGTCATCTATTTTGGA 57.448 32.000 19.76 0.00 45.43 3.53
5858 6820 7.972301 ACAAAATTGGGTCATCTATTTTGGAA 58.028 30.769 19.76 0.00 45.43 3.53
5859 6821 7.877612 ACAAAATTGGGTCATCTATTTTGGAAC 59.122 33.333 19.76 0.00 45.43 3.62
5860 6822 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
5861 6823 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5862 6824 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5863 6825 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5864 6826 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5865 6827 4.514401 GTCATCTATTTTGGAACGGAGGT 58.486 43.478 0.00 0.00 0.00 3.85
5866 6828 5.395990 GGTCATCTATTTTGGAACGGAGGTA 60.396 44.000 0.00 0.00 0.00 3.08
5894 6856 5.638596 ATGTGTATCTGTCACGTTGTAGA 57.361 39.130 0.00 0.00 38.48 2.59
5922 6884 4.074970 AGGCTCGCCATTTATTAAGGATG 58.925 43.478 11.02 0.00 38.92 3.51
5923 6885 4.072131 GGCTCGCCATTTATTAAGGATGA 58.928 43.478 2.41 0.00 35.81 2.92
5924 6886 4.702131 GGCTCGCCATTTATTAAGGATGAT 59.298 41.667 2.41 0.00 35.81 2.45
5925 6887 5.392380 GGCTCGCCATTTATTAAGGATGATG 60.392 44.000 2.41 0.00 35.81 3.07
5926 6888 5.412594 GCTCGCCATTTATTAAGGATGATGA 59.587 40.000 0.00 0.00 0.00 2.92
5967 6929 3.499745 GGTGGAGGTGGTATTTCTTGGTT 60.500 47.826 0.00 0.00 0.00 3.67
5991 6953 0.108709 TTGCCGATGGATTTTGCAGC 60.109 50.000 0.00 0.00 32.88 5.25
6001 6963 3.072768 TGGATTTTGCAGCCAGGATTTTT 59.927 39.130 0.00 0.00 0.00 1.94
6011 6973 2.331194 CCAGGATTTTTCGCAAGCAAG 58.669 47.619 0.00 0.00 37.18 4.01
6062 7024 1.697082 GGGGGATTTCTCCGGGAGAC 61.697 65.000 26.03 14.65 43.11 3.36
6063 7025 1.442148 GGGATTTCTCCGGGAGACG 59.558 63.158 26.03 0.24 43.11 4.18
6093 7055 3.428282 CGTACCTTGCGTTGCCCC 61.428 66.667 0.00 0.00 0.00 5.80
6113 7075 1.188863 GGGCAACTCGTAGGTTCCTA 58.811 55.000 0.00 0.00 0.00 2.94
6121 7083 2.944349 CTCGTAGGTTCCTACACTCCTC 59.056 54.545 23.32 1.36 38.94 3.71
6127 7089 1.067776 GTTCCTACACTCCTCCACACG 60.068 57.143 0.00 0.00 0.00 4.49
6131 7093 0.963962 TACACTCCTCCACACGGTTC 59.036 55.000 0.00 0.00 0.00 3.62
6133 7095 1.458777 ACTCCTCCACACGGTTCCA 60.459 57.895 0.00 0.00 0.00 3.53
6134 7096 1.052124 ACTCCTCCACACGGTTCCAA 61.052 55.000 0.00 0.00 0.00 3.53
6135 7097 0.324943 CTCCTCCACACGGTTCCAAT 59.675 55.000 0.00 0.00 0.00 3.16
6136 7098 0.036164 TCCTCCACACGGTTCCAATG 59.964 55.000 0.00 0.00 0.00 2.82
6137 7099 0.250727 CCTCCACACGGTTCCAATGT 60.251 55.000 0.00 0.00 0.00 2.71
6138 7100 1.604604 CTCCACACGGTTCCAATGTT 58.395 50.000 0.00 0.00 0.00 2.71
6161 7458 3.488090 GCGAAAAGGAGGCGACCG 61.488 66.667 0.00 0.00 34.73 4.79
6182 7479 1.665442 GGTGGCCTTTGCGAATTGT 59.335 52.632 3.32 0.00 38.85 2.71
6191 7488 3.127533 GCGAATTGTGAGCCGCCT 61.128 61.111 0.00 0.00 41.59 5.52
6218 7515 1.613630 GCTGGTTCCCTCTCCCTCA 60.614 63.158 0.00 0.00 0.00 3.86
6223 7520 1.353091 GTTCCCTCTCCCTCAGTTGT 58.647 55.000 0.00 0.00 0.00 3.32
6266 7564 2.731571 GGGACCTCGGCTATGTGCA 61.732 63.158 0.00 0.00 45.15 4.57
6269 7567 0.104855 GACCTCGGCTATGTGCATCA 59.895 55.000 0.00 0.00 45.15 3.07
6468 7770 2.276116 GGAGGTCGACTGGCACTGA 61.276 63.158 16.46 0.00 0.00 3.41
6505 7807 1.826487 GGGTGGTGGTTGTGTGGAC 60.826 63.158 0.00 0.00 0.00 4.02
6567 7873 4.813296 TGCGTTTCTTCTTCCTTCTTTC 57.187 40.909 0.00 0.00 0.00 2.62
6589 7895 0.770499 TTGTTGCTGGAGGGATGTCA 59.230 50.000 0.00 0.00 0.00 3.58
6637 7943 2.668550 GCGGCGGAACCATATCCC 60.669 66.667 9.78 0.00 39.03 3.85
6651 7957 5.688807 ACCATATCCCAGTTCTCTTTCATG 58.311 41.667 0.00 0.00 0.00 3.07
6663 7969 1.358787 TCTTTCATGTGGAAGGGGCAT 59.641 47.619 1.38 0.00 36.72 4.40
6706 8012 0.745845 GATGGCGAAGACTGGTGCAT 60.746 55.000 0.00 0.00 34.59 3.96
6709 8015 2.327343 GCGAAGACTGGTGCATGCA 61.327 57.895 18.46 18.46 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.273449 CTGGTGTGGGAGGCCATC 59.727 66.667 5.01 0.00 0.00 3.51
9 10 4.052518 GCTGGTGTGGGAGGCCAT 62.053 66.667 5.01 0.00 0.00 4.40
13 14 3.302347 GAGTCGCTGGTGTGGGAGG 62.302 68.421 0.00 0.00 0.00 4.30
14 15 2.262915 GAGTCGCTGGTGTGGGAG 59.737 66.667 0.00 0.00 0.00 4.30
15 16 3.311110 GGAGTCGCTGGTGTGGGA 61.311 66.667 0.00 0.00 0.00 4.37
16 17 4.742201 CGGAGTCGCTGGTGTGGG 62.742 72.222 0.00 0.00 0.00 4.61
37 38 4.408821 GCTGCGGTGGTGGATCCA 62.409 66.667 11.44 11.44 45.01 3.41
38 39 4.408821 TGCTGCGGTGGTGGATCC 62.409 66.667 4.20 4.20 0.00 3.36
39 40 3.127533 GTGCTGCGGTGGTGGATC 61.128 66.667 0.00 0.00 0.00 3.36
40 41 4.722700 GGTGCTGCGGTGGTGGAT 62.723 66.667 0.00 0.00 0.00 3.41
61 62 3.656243 TAGCAACGACGCGACGAGG 62.656 63.158 34.99 25.22 36.85 4.63
62 63 2.202260 TAGCAACGACGCGACGAG 60.202 61.111 34.99 25.78 36.85 4.18
63 64 2.202260 CTAGCAACGACGCGACGA 60.202 61.111 34.99 13.16 36.85 4.20
64 65 2.202260 TCTAGCAACGACGCGACG 60.202 61.111 27.89 27.89 36.85 5.12
65 66 1.868251 CCTCTAGCAACGACGCGAC 60.868 63.158 15.93 5.54 36.85 5.19
66 67 1.978712 CTCCTCTAGCAACGACGCGA 61.979 60.000 15.93 0.00 36.85 5.87
67 68 1.583967 CTCCTCTAGCAACGACGCG 60.584 63.158 3.53 3.53 36.85 6.01
68 69 0.248296 CTCTCCTCTAGCAACGACGC 60.248 60.000 0.00 0.00 0.00 5.19
69 70 0.378962 CCTCTCCTCTAGCAACGACG 59.621 60.000 0.00 0.00 0.00 5.12
70 71 1.752683 TCCTCTCCTCTAGCAACGAC 58.247 55.000 0.00 0.00 0.00 4.34
71 72 2.370349 CTTCCTCTCCTCTAGCAACGA 58.630 52.381 0.00 0.00 0.00 3.85
72 73 1.407258 CCTTCCTCTCCTCTAGCAACG 59.593 57.143 0.00 0.00 0.00 4.10
73 74 1.760029 CCCTTCCTCTCCTCTAGCAAC 59.240 57.143 0.00 0.00 0.00 4.17
74 75 1.343478 CCCCTTCCTCTCCTCTAGCAA 60.343 57.143 0.00 0.00 0.00 3.91
75 76 0.263172 CCCCTTCCTCTCCTCTAGCA 59.737 60.000 0.00 0.00 0.00 3.49
76 77 0.471022 CCCCCTTCCTCTCCTCTAGC 60.471 65.000 0.00 0.00 0.00 3.42
77 78 1.146982 CTCCCCCTTCCTCTCCTCTAG 59.853 61.905 0.00 0.00 0.00 2.43
78 79 1.236708 CTCCCCCTTCCTCTCCTCTA 58.763 60.000 0.00 0.00 0.00 2.43
79 80 1.598856 CCTCCCCCTTCCTCTCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
80 81 1.074850 CCTCCCCCTTCCTCTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
81 82 2.652113 CCCTCCCCCTTCCTCTCCT 61.652 68.421 0.00 0.00 0.00 3.69
82 83 2.040359 CCCTCCCCCTTCCTCTCC 60.040 72.222 0.00 0.00 0.00 3.71
83 84 1.074850 CTCCCTCCCCCTTCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
84 85 1.550374 TCTCCCTCCCCCTTCCTCT 60.550 63.158 0.00 0.00 0.00 3.69
85 86 1.074850 CTCTCCCTCCCCCTTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
86 87 2.652113 CCTCTCCCTCCCCCTTCCT 61.652 68.421 0.00 0.00 0.00 3.36
87 88 2.040359 CCTCTCCCTCCCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
88 89 1.074850 CTCCTCTCCCTCCCCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
89 90 1.465189 AACTCCTCTCCCTCCCCCTT 61.465 60.000 0.00 0.00 0.00 3.95
90 91 1.869452 AACTCCTCTCCCTCCCCCT 60.869 63.158 0.00 0.00 0.00 4.79
91 92 1.383386 GAACTCCTCTCCCTCCCCC 60.383 68.421 0.00 0.00 0.00 5.40
92 93 1.758906 CGAACTCCTCTCCCTCCCC 60.759 68.421 0.00 0.00 0.00 4.81
93 94 0.324460 TTCGAACTCCTCTCCCTCCC 60.324 60.000 0.00 0.00 0.00 4.30
94 95 1.410882 CATTCGAACTCCTCTCCCTCC 59.589 57.143 0.00 0.00 0.00 4.30
95 96 2.379972 TCATTCGAACTCCTCTCCCTC 58.620 52.381 0.00 0.00 0.00 4.30
96 97 2.534042 TCATTCGAACTCCTCTCCCT 57.466 50.000 0.00 0.00 0.00 4.20
97 98 3.611766 TTTCATTCGAACTCCTCTCCC 57.388 47.619 0.00 0.00 0.00 4.30
98 99 4.808364 CAGATTTCATTCGAACTCCTCTCC 59.192 45.833 0.00 0.00 32.61 3.71
99 100 4.269844 GCAGATTTCATTCGAACTCCTCTC 59.730 45.833 0.00 0.00 32.61 3.20
100 101 4.187694 GCAGATTTCATTCGAACTCCTCT 58.812 43.478 0.00 0.00 32.61 3.69
101 102 3.000724 CGCAGATTTCATTCGAACTCCTC 59.999 47.826 0.00 0.00 32.61 3.71
102 103 2.932614 CGCAGATTTCATTCGAACTCCT 59.067 45.455 0.00 0.00 32.61 3.69
103 104 2.030946 CCGCAGATTTCATTCGAACTCC 59.969 50.000 0.00 0.00 32.61 3.85
104 105 2.030946 CCCGCAGATTTCATTCGAACTC 59.969 50.000 0.00 0.00 32.42 3.01
105 106 2.009774 CCCGCAGATTTCATTCGAACT 58.990 47.619 0.00 0.00 0.00 3.01
106 107 1.737793 ACCCGCAGATTTCATTCGAAC 59.262 47.619 0.00 0.00 0.00 3.95
107 108 1.737236 CACCCGCAGATTTCATTCGAA 59.263 47.619 0.00 0.00 0.00 3.71
108 109 1.368641 CACCCGCAGATTTCATTCGA 58.631 50.000 0.00 0.00 0.00 3.71
109 110 0.248215 GCACCCGCAGATTTCATTCG 60.248 55.000 0.00 0.00 38.36 3.34
110 111 0.248215 CGCACCCGCAGATTTCATTC 60.248 55.000 0.00 0.00 38.40 2.67
111 112 1.656818 CCGCACCCGCAGATTTCATT 61.657 55.000 0.00 0.00 38.40 2.57
112 113 2.114670 CCGCACCCGCAGATTTCAT 61.115 57.895 0.00 0.00 38.40 2.57
113 114 2.745884 CCGCACCCGCAGATTTCA 60.746 61.111 0.00 0.00 38.40 2.69
114 115 3.508840 CCCGCACCCGCAGATTTC 61.509 66.667 0.00 0.00 38.40 2.17
131 132 3.588891 CTTGTTCGAAACCGCCCGC 62.589 63.158 0.00 0.00 0.00 6.13
132 133 1.957186 TCTTGTTCGAAACCGCCCG 60.957 57.895 0.00 0.00 0.00 6.13
133 134 1.572941 GTCTTGTTCGAAACCGCCC 59.427 57.895 0.00 0.00 0.00 6.13
134 135 1.203313 CGTCTTGTTCGAAACCGCC 59.797 57.895 0.00 0.00 0.00 6.13
135 136 0.161024 CTCGTCTTGTTCGAAACCGC 59.839 55.000 0.00 0.00 36.89 5.68
136 137 0.161024 GCTCGTCTTGTTCGAAACCG 59.839 55.000 0.00 0.00 36.89 4.44
137 138 0.161024 CGCTCGTCTTGTTCGAAACC 59.839 55.000 0.00 0.00 36.89 3.27
138 139 0.161024 CCGCTCGTCTTGTTCGAAAC 59.839 55.000 0.00 0.00 36.89 2.78
139 140 0.942410 CCCGCTCGTCTTGTTCGAAA 60.942 55.000 0.00 0.00 36.89 3.46
140 141 1.372499 CCCGCTCGTCTTGTTCGAA 60.372 57.895 0.00 0.00 36.89 3.71
141 142 2.196382 CTCCCGCTCGTCTTGTTCGA 62.196 60.000 0.00 0.00 35.96 3.71
142 143 1.801913 CTCCCGCTCGTCTTGTTCG 60.802 63.158 0.00 0.00 0.00 3.95
143 144 0.173708 ATCTCCCGCTCGTCTTGTTC 59.826 55.000 0.00 0.00 0.00 3.18
144 145 0.108615 CATCTCCCGCTCGTCTTGTT 60.109 55.000 0.00 0.00 0.00 2.83
145 146 1.513158 CATCTCCCGCTCGTCTTGT 59.487 57.895 0.00 0.00 0.00 3.16
146 147 1.880340 GCATCTCCCGCTCGTCTTG 60.880 63.158 0.00 0.00 0.00 3.02
147 148 2.496817 GCATCTCCCGCTCGTCTT 59.503 61.111 0.00 0.00 0.00 3.01
148 149 3.893763 CGCATCTCCCGCTCGTCT 61.894 66.667 0.00 0.00 0.00 4.18
149 150 4.933064 CCGCATCTCCCGCTCGTC 62.933 72.222 0.00 0.00 0.00 4.20
152 153 3.214250 CTACCCGCATCTCCCGCTC 62.214 68.421 0.00 0.00 0.00 5.03
153 154 3.227276 CTACCCGCATCTCCCGCT 61.227 66.667 0.00 0.00 0.00 5.52
154 155 2.588856 AAACTACCCGCATCTCCCGC 62.589 60.000 0.00 0.00 0.00 6.13
155 156 0.107848 AAAACTACCCGCATCTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
156 157 1.664873 GAAAACTACCCGCATCTCCC 58.335 55.000 0.00 0.00 0.00 4.30
157 158 1.287425 CGAAAACTACCCGCATCTCC 58.713 55.000 0.00 0.00 0.00 3.71
164 165 1.515081 TTCCAAGCGAAAACTACCCG 58.485 50.000 0.00 0.00 0.00 5.28
165 166 5.392703 CCTTTATTCCAAGCGAAAACTACCC 60.393 44.000 0.00 0.00 33.08 3.69
166 167 5.182570 ACCTTTATTCCAAGCGAAAACTACC 59.817 40.000 0.00 0.00 33.08 3.18
167 168 6.084277 CACCTTTATTCCAAGCGAAAACTAC 58.916 40.000 0.00 0.00 33.08 2.73
168 169 5.335348 GCACCTTTATTCCAAGCGAAAACTA 60.335 40.000 0.00 0.00 33.08 2.24
169 170 4.558697 GCACCTTTATTCCAAGCGAAAACT 60.559 41.667 0.00 0.00 33.08 2.66
170 171 3.673338 GCACCTTTATTCCAAGCGAAAAC 59.327 43.478 0.00 0.00 33.08 2.43
171 172 3.305744 GGCACCTTTATTCCAAGCGAAAA 60.306 43.478 0.00 0.00 33.08 2.29
172 173 2.230266 GGCACCTTTATTCCAAGCGAAA 59.770 45.455 0.00 0.00 33.08 3.46
173 174 1.816224 GGCACCTTTATTCCAAGCGAA 59.184 47.619 0.00 0.00 34.14 4.70
174 175 1.459450 GGCACCTTTATTCCAAGCGA 58.541 50.000 0.00 0.00 0.00 4.93
175 176 0.098728 CGGCACCTTTATTCCAAGCG 59.901 55.000 0.00 0.00 0.00 4.68
176 177 0.455815 CCGGCACCTTTATTCCAAGC 59.544 55.000 0.00 0.00 0.00 4.01
177 178 1.102978 CCCGGCACCTTTATTCCAAG 58.897 55.000 0.00 0.00 0.00 3.61
178 179 0.968393 GCCCGGCACCTTTATTCCAA 60.968 55.000 3.91 0.00 0.00 3.53
179 180 1.379309 GCCCGGCACCTTTATTCCA 60.379 57.895 3.91 0.00 0.00 3.53
180 181 2.125326 GGCCCGGCACCTTTATTCC 61.125 63.158 12.58 0.00 0.00 3.01
181 182 2.125326 GGGCCCGGCACCTTTATTC 61.125 63.158 5.69 0.00 0.00 1.75
182 183 2.043349 GGGCCCGGCACCTTTATT 60.043 61.111 5.69 0.00 0.00 1.40
183 184 3.343326 TGGGCCCGGCACCTTTAT 61.343 61.111 19.37 0.00 0.00 1.40
184 185 4.354162 GTGGGCCCGGCACCTTTA 62.354 66.667 19.37 0.00 0.00 1.85
219 220 3.098555 CCTGTTACGGGATTGCGC 58.901 61.111 3.71 0.00 29.82 6.09
220 221 1.743623 TGCCTGTTACGGGATTGCG 60.744 57.895 15.40 0.00 29.82 4.85
221 222 0.676782 AGTGCCTGTTACGGGATTGC 60.677 55.000 15.40 0.00 29.82 3.56
222 223 1.468520 CAAGTGCCTGTTACGGGATTG 59.531 52.381 15.40 11.02 29.82 2.67
223 224 1.613255 CCAAGTGCCTGTTACGGGATT 60.613 52.381 15.40 2.22 29.82 3.01
224 225 0.035439 CCAAGTGCCTGTTACGGGAT 60.035 55.000 15.40 0.00 29.82 3.85
225 226 1.373435 CCAAGTGCCTGTTACGGGA 59.627 57.895 15.40 0.00 29.82 5.14
226 227 0.953960 GACCAAGTGCCTGTTACGGG 60.954 60.000 5.73 5.73 0.00 5.28
227 228 0.250124 TGACCAAGTGCCTGTTACGG 60.250 55.000 0.00 0.00 0.00 4.02
228 229 1.148310 CTGACCAAGTGCCTGTTACG 58.852 55.000 0.00 0.00 0.00 3.18
229 230 1.071699 TCCTGACCAAGTGCCTGTTAC 59.928 52.381 0.00 0.00 0.00 2.50
230 231 1.071699 GTCCTGACCAAGTGCCTGTTA 59.928 52.381 0.00 0.00 0.00 2.41
231 232 0.179018 GTCCTGACCAAGTGCCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
232 233 1.056700 AGTCCTGACCAAGTGCCTGT 61.057 55.000 0.00 0.00 0.00 4.00
233 234 0.109342 AAGTCCTGACCAAGTGCCTG 59.891 55.000 0.00 0.00 0.00 4.85
234 235 0.109342 CAAGTCCTGACCAAGTGCCT 59.891 55.000 0.00 0.00 0.00 4.75
235 236 0.179018 ACAAGTCCTGACCAAGTGCC 60.179 55.000 0.00 0.00 0.00 5.01
236 237 1.230324 GACAAGTCCTGACCAAGTGC 58.770 55.000 0.00 0.00 0.00 4.40
237 238 1.502231 CGACAAGTCCTGACCAAGTG 58.498 55.000 0.00 0.00 0.00 3.16
238 239 0.249911 GCGACAAGTCCTGACCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
239 240 1.284982 CGCGACAAGTCCTGACCAAG 61.285 60.000 0.00 0.00 0.00 3.61
240 241 1.300620 CGCGACAAGTCCTGACCAA 60.301 57.895 0.00 0.00 0.00 3.67
241 242 2.338620 CGCGACAAGTCCTGACCA 59.661 61.111 0.00 0.00 0.00 4.02
242 243 3.112709 GCGCGACAAGTCCTGACC 61.113 66.667 12.10 0.00 0.00 4.02
243 244 3.470567 CGCGCGACAAGTCCTGAC 61.471 66.667 28.94 0.00 0.00 3.51
259 260 4.907034 CGTGACGATCTCCCCGCG 62.907 72.222 0.00 0.00 0.00 6.46
261 262 3.518998 AGCGTGACGATCTCCCCG 61.519 66.667 10.10 0.00 0.00 5.73
262 263 1.381928 TACAGCGTGACGATCTCCCC 61.382 60.000 10.10 0.00 0.00 4.81
263 264 0.669077 ATACAGCGTGACGATCTCCC 59.331 55.000 10.10 0.00 0.00 4.30
264 265 1.660614 CGATACAGCGTGACGATCTCC 60.661 57.143 10.10 0.00 0.00 3.71
265 266 1.660614 CCGATACAGCGTGACGATCTC 60.661 57.143 10.10 0.00 0.00 2.75
266 267 0.308068 CCGATACAGCGTGACGATCT 59.692 55.000 10.10 0.00 0.00 2.75
267 268 0.306840 TCCGATACAGCGTGACGATC 59.693 55.000 10.10 1.27 0.00 3.69
268 269 0.029035 GTCCGATACAGCGTGACGAT 59.971 55.000 10.10 0.00 0.00 3.73
269 270 1.426621 GTCCGATACAGCGTGACGA 59.573 57.895 10.10 0.00 0.00 4.20
270 271 1.933041 CGTCCGATACAGCGTGACG 60.933 63.158 0.00 0.00 43.05 4.35
271 272 1.585521 CCGTCCGATACAGCGTGAC 60.586 63.158 0.00 0.00 0.00 3.67
272 273 2.795973 CCGTCCGATACAGCGTGA 59.204 61.111 0.00 0.00 0.00 4.35
273 274 2.954868 GCCGTCCGATACAGCGTG 60.955 66.667 0.00 0.00 0.00 5.34
274 275 3.138798 AGCCGTCCGATACAGCGT 61.139 61.111 0.00 0.00 36.56 5.07
275 276 2.655364 CAGCCGTCCGATACAGCG 60.655 66.667 0.00 0.00 36.56 5.18
276 277 2.962253 GCAGCCGTCCGATACAGC 60.962 66.667 0.00 0.00 0.00 4.40
277 278 2.655364 CGCAGCCGTCCGATACAG 60.655 66.667 0.00 0.00 0.00 2.74
278 279 4.201679 CCGCAGCCGTCCGATACA 62.202 66.667 0.00 0.00 0.00 2.29
279 280 4.203076 ACCGCAGCCGTCCGATAC 62.203 66.667 0.00 0.00 0.00 2.24
280 281 4.201679 CACCGCAGCCGTCCGATA 62.202 66.667 0.00 0.00 0.00 2.92
322 323 3.476646 CTGACTCGTGCAGCTGCG 61.477 66.667 32.11 20.61 45.83 5.18
323 324 2.048784 TCTGACTCGTGCAGCTGC 60.049 61.111 31.89 31.89 42.50 5.25
324 325 0.319383 AAGTCTGACTCGTGCAGCTG 60.319 55.000 11.31 10.11 33.45 4.24
325 326 0.390860 AAAGTCTGACTCGTGCAGCT 59.609 50.000 11.31 0.00 33.45 4.24
326 327 1.989165 CTAAAGTCTGACTCGTGCAGC 59.011 52.381 11.31 0.00 33.45 5.25
327 328 2.029828 ACCTAAAGTCTGACTCGTGCAG 60.030 50.000 11.31 4.32 34.71 4.41
328 329 1.961394 ACCTAAAGTCTGACTCGTGCA 59.039 47.619 11.31 0.00 0.00 4.57
329 330 2.726832 ACCTAAAGTCTGACTCGTGC 57.273 50.000 11.31 0.00 0.00 5.34
330 331 6.866770 TGAATAAACCTAAAGTCTGACTCGTG 59.133 38.462 11.31 4.11 0.00 4.35
331 332 6.989659 TGAATAAACCTAAAGTCTGACTCGT 58.010 36.000 11.31 5.05 0.00 4.18
332 333 7.043986 CGATGAATAAACCTAAAGTCTGACTCG 60.044 40.741 11.31 3.03 0.00 4.18
333 334 7.222999 CCGATGAATAAACCTAAAGTCTGACTC 59.777 40.741 11.31 0.00 0.00 3.36
334 335 7.042335 CCGATGAATAAACCTAAAGTCTGACT 58.958 38.462 4.06 4.06 0.00 3.41
335 336 6.238130 GCCGATGAATAAACCTAAAGTCTGAC 60.238 42.308 0.00 0.00 0.00 3.51
336 337 5.815740 GCCGATGAATAAACCTAAAGTCTGA 59.184 40.000 0.00 0.00 0.00 3.27
337 338 5.276868 CGCCGATGAATAAACCTAAAGTCTG 60.277 44.000 0.00 0.00 0.00 3.51
338 339 4.809426 CGCCGATGAATAAACCTAAAGTCT 59.191 41.667 0.00 0.00 0.00 3.24
339 340 4.552184 GCGCCGATGAATAAACCTAAAGTC 60.552 45.833 0.00 0.00 0.00 3.01
340 341 3.311596 GCGCCGATGAATAAACCTAAAGT 59.688 43.478 0.00 0.00 0.00 2.66
341 342 3.560068 AGCGCCGATGAATAAACCTAAAG 59.440 43.478 2.29 0.00 0.00 1.85
342 343 3.311322 CAGCGCCGATGAATAAACCTAAA 59.689 43.478 2.29 0.00 0.00 1.85
343 344 2.869801 CAGCGCCGATGAATAAACCTAA 59.130 45.455 2.29 0.00 0.00 2.69
344 345 2.479837 CAGCGCCGATGAATAAACCTA 58.520 47.619 2.29 0.00 0.00 3.08
345 346 1.299541 CAGCGCCGATGAATAAACCT 58.700 50.000 2.29 0.00 0.00 3.50
346 347 0.317020 GCAGCGCCGATGAATAAACC 60.317 55.000 6.51 0.00 0.00 3.27
347 348 0.317020 GGCAGCGCCGATGAATAAAC 60.317 55.000 6.51 0.00 39.62 2.01
434 435 3.799755 GCAATGCGTCACCGGACC 61.800 66.667 9.46 0.00 41.13 4.46
489 490 2.154462 GCTACGGGACCGCTACTATAA 58.846 52.381 11.21 0.00 44.19 0.98
821 1407 2.441901 AGCGAGGCAGGAGGAGAG 60.442 66.667 0.00 0.00 0.00 3.20
881 1484 1.181786 GGAGTCTCTCTGGACTGTGG 58.818 60.000 1.71 0.00 45.32 4.17
958 1561 1.349259 CCATGAAACGACCGACCGTC 61.349 60.000 0.00 0.00 42.54 4.79
984 1594 1.656818 GCATGTCCCATGAACGGTGG 61.657 60.000 8.34 0.00 36.47 4.61
1030 1640 1.664649 CCAGCGTGCTCGTGAAGAA 60.665 57.895 10.18 0.00 39.49 2.52
1407 2027 1.204113 AGAGAGGGTCCAAAGCCAGG 61.204 60.000 0.00 0.00 46.01 4.45
1413 2033 3.510360 CGTAGAAGAAGAGAGGGTCCAAA 59.490 47.826 0.00 0.00 0.00 3.28
1414 2034 3.090037 CGTAGAAGAAGAGAGGGTCCAA 58.910 50.000 0.00 0.00 0.00 3.53
1422 2042 1.666700 GAGAGCGCGTAGAAGAAGAGA 59.333 52.381 8.43 0.00 0.00 3.10
1790 2421 0.026285 GCGGTTGATTCGATGGTTCG 59.974 55.000 0.00 0.00 46.87 3.95
2046 2700 4.047125 TAAGCTGGTGGGGGCTGC 62.047 66.667 0.00 0.00 38.91 5.25
2061 2715 2.124411 GGGTCAGGGCCATTCTAGTAA 58.876 52.381 6.18 0.00 0.00 2.24
2120 2781 2.951745 CGCATCGGTCTCTGTCGC 60.952 66.667 0.00 0.00 0.00 5.19
2156 2817 4.919754 CCGCTAACCATCCGTACTTATTAC 59.080 45.833 0.00 0.00 0.00 1.89
2210 2871 3.062763 GCATCCACGGTCATATTCTGAG 58.937 50.000 0.00 0.00 33.51 3.35
2239 2900 0.930310 ATGTTCAATGATCGTCGCCG 59.070 50.000 0.00 0.00 0.00 6.46
2249 2910 5.664294 TTTCCCTCCATCAATGTTCAATG 57.336 39.130 0.00 0.00 0.00 2.82
2250 2911 7.399765 TGTTATTTCCCTCCATCAATGTTCAAT 59.600 33.333 0.00 0.00 0.00 2.57
2251 2912 6.723515 TGTTATTTCCCTCCATCAATGTTCAA 59.276 34.615 0.00 0.00 0.00 2.69
2252 2913 6.252233 TGTTATTTCCCTCCATCAATGTTCA 58.748 36.000 0.00 0.00 0.00 3.18
2253 2914 6.773976 TGTTATTTCCCTCCATCAATGTTC 57.226 37.500 0.00 0.00 0.00 3.18
2254 2915 6.155049 CCTTGTTATTTCCCTCCATCAATGTT 59.845 38.462 0.00 0.00 0.00 2.71
2255 2916 5.658190 CCTTGTTATTTCCCTCCATCAATGT 59.342 40.000 0.00 0.00 0.00 2.71
2289 2950 5.233225 TGAGATCAGGACGCATAATTCATC 58.767 41.667 0.00 0.00 0.00 2.92
2290 2951 5.219343 TGAGATCAGGACGCATAATTCAT 57.781 39.130 0.00 0.00 0.00 2.57
2292 2953 5.348179 CAGATGAGATCAGGACGCATAATTC 59.652 44.000 0.00 0.00 0.00 2.17
2383 3044 7.915293 TTTTTCACCTCTAAATAATGCTCGA 57.085 32.000 0.00 0.00 0.00 4.04
2384 3045 9.013490 CAATTTTTCACCTCTAAATAATGCTCG 57.987 33.333 0.00 0.00 0.00 5.03
2385 3046 9.860898 ACAATTTTTCACCTCTAAATAATGCTC 57.139 29.630 0.00 0.00 0.00 4.26
2458 3216 2.740055 CACCAGCCACACGAGAGC 60.740 66.667 0.00 0.00 0.00 4.09
2459 3217 0.946221 GAACACCAGCCACACGAGAG 60.946 60.000 0.00 0.00 0.00 3.20
2568 3326 7.226128 TGAGAGAATGAACATGCACTCAATATC 59.774 37.037 16.51 0.00 39.89 1.63
2647 3406 3.080319 GGCTGATCCAAATAGGCAGATC 58.920 50.000 0.00 0.00 37.02 2.75
2699 3485 7.372451 TGAAAAAGACAGAACTCGAGAAAAA 57.628 32.000 21.68 0.00 0.00 1.94
2700 3486 6.978343 TGAAAAAGACAGAACTCGAGAAAA 57.022 33.333 21.68 0.00 0.00 2.29
2701 3487 7.553881 AATGAAAAAGACAGAACTCGAGAAA 57.446 32.000 21.68 0.00 0.00 2.52
2702 3488 8.833231 ATAATGAAAAAGACAGAACTCGAGAA 57.167 30.769 21.68 0.00 0.00 2.87
2703 3489 8.833231 AATAATGAAAAAGACAGAACTCGAGA 57.167 30.769 21.68 0.00 0.00 4.04
2712 3498 9.277565 CCGTCACATAAATAATGAAAAAGACAG 57.722 33.333 0.00 0.00 39.07 3.51
2713 3499 8.788806 ACCGTCACATAAATAATGAAAAAGACA 58.211 29.630 0.00 0.00 39.07 3.41
2771 3557 3.002759 GCAGATTATTCAGCGGTCCTTTC 59.997 47.826 0.00 0.00 0.00 2.62
2836 3622 6.291796 GCTTGCTTATTTTCCGTATTTCATGC 60.292 38.462 0.00 0.00 0.00 4.06
2896 3683 6.417635 ACGCAAACTTTCTGACAATACATTTG 59.582 34.615 0.00 0.00 0.00 2.32
3024 3811 7.386299 CGGCAGCTTATGATAGTTTCTCTATTT 59.614 37.037 0.00 0.00 39.22 1.40
3047 3834 5.545658 TGTGTTCAAATTCTATCTTCGGC 57.454 39.130 0.00 0.00 0.00 5.54
3062 3849 3.243035 CCGCACAGAAAAGAATGTGTTCA 60.243 43.478 7.12 0.00 46.75 3.18
3096 3883 5.629079 TCACTACACACATACAGACTCAG 57.371 43.478 0.00 0.00 0.00 3.35
3131 3923 9.660180 AGTTCAGAATTCTCCAAGTTTCTATAC 57.340 33.333 4.57 0.00 0.00 1.47
3190 3991 8.258708 CCAGAAGATGATCTGCAGAATATGATA 58.741 37.037 22.50 2.57 44.43 2.15
3193 3994 5.122554 GCCAGAAGATGATCTGCAGAATATG 59.877 44.000 22.50 10.60 44.43 1.78
3199 4000 2.214347 CAGCCAGAAGATGATCTGCAG 58.786 52.381 7.63 7.63 44.43 4.41
3270 4071 5.600696 TGCAATACGAATATGAGCAGAAGA 58.399 37.500 0.00 0.00 32.12 2.87
3273 4074 6.866010 AATTGCAATACGAATATGAGCAGA 57.134 33.333 13.39 0.00 35.36 4.26
3428 4229 7.183839 TCTCCAAATAACTAATGGAAGAGGGAA 59.816 37.037 0.00 0.00 42.41 3.97
3480 4281 1.142748 CACGAGCCACTCTGGGATC 59.857 63.158 0.00 0.00 39.96 3.36
3491 4292 3.126343 CACCCAATAAAAGTACACGAGCC 59.874 47.826 0.00 0.00 0.00 4.70
3492 4293 3.425758 GCACCCAATAAAAGTACACGAGC 60.426 47.826 0.00 0.00 0.00 5.03
3493 4294 3.749088 TGCACCCAATAAAAGTACACGAG 59.251 43.478 0.00 0.00 0.00 4.18
3494 4295 3.741249 TGCACCCAATAAAAGTACACGA 58.259 40.909 0.00 0.00 0.00 4.35
3495 4296 4.491234 TTGCACCCAATAAAAGTACACG 57.509 40.909 0.00 0.00 0.00 4.49
3496 4297 8.996024 ATAAATTGCACCCAATAAAAGTACAC 57.004 30.769 0.00 0.00 40.69 2.90
3497 4298 9.429359 CAATAAATTGCACCCAATAAAAGTACA 57.571 29.630 0.00 0.00 40.69 2.90
3531 4332 7.016153 TGACCAAACTAACAACCAGATATCT 57.984 36.000 0.00 0.00 0.00 1.98
3535 4336 6.068010 TCATTGACCAAACTAACAACCAGAT 58.932 36.000 0.00 0.00 0.00 2.90
3559 4360 4.320935 GGTGCGGTGTAAATTCAGAAACAT 60.321 41.667 0.00 0.00 0.00 2.71
3563 4364 3.134574 AGGTGCGGTGTAAATTCAGAA 57.865 42.857 0.00 0.00 0.00 3.02
3568 4369 2.356135 CTGCTAGGTGCGGTGTAAATT 58.644 47.619 0.00 0.00 46.63 1.82
3578 4379 7.042335 TCTTAGAAAAGAATACTGCTAGGTGC 58.958 38.462 0.00 0.00 38.81 5.01
3618 4419 3.433615 GGACTGTTTGCAGATACTGTGAC 59.566 47.826 11.14 0.00 45.28 3.67
3624 4425 2.704572 AGCAGGACTGTTTGCAGATAC 58.295 47.619 16.87 0.00 45.28 2.24
3653 4454 7.707893 CCCCTTGAAACAATTATTGCTTCATAG 59.292 37.037 20.00 18.08 43.04 2.23
3660 4461 7.279981 GGTATTTCCCCTTGAAACAATTATTGC 59.720 37.037 4.68 0.00 45.38 3.56
3682 4483 3.222173 TCACCAGCAACAGTTTGGTAT 57.778 42.857 9.02 0.00 43.11 2.73
3707 4508 9.582431 CAGTGCATCTATTGATTCAAATTTTCT 57.418 29.630 2.68 0.00 28.42 2.52
3746 4547 8.582437 CAGCATTGATATGGAGAATGGTATTTT 58.418 33.333 0.00 0.00 36.04 1.82
3754 4555 5.768662 CCTGTTCAGCATTGATATGGAGAAT 59.231 40.000 0.00 0.00 32.27 2.40
3755 4556 5.104402 TCCTGTTCAGCATTGATATGGAGAA 60.104 40.000 0.00 0.00 32.27 2.87
3757 4558 4.711399 TCCTGTTCAGCATTGATATGGAG 58.289 43.478 0.00 0.00 32.27 3.86
3761 4562 7.273320 CAGATTTCCTGTTCAGCATTGATAT 57.727 36.000 0.00 0.00 38.10 1.63
3782 4583 7.232118 TGATAGAACTGATTGTCTGAACAGA 57.768 36.000 0.00 0.00 36.57 3.41
3798 4599 6.032094 CCAGCATTCAACAACATGATAGAAC 58.968 40.000 0.00 0.00 0.00 3.01
3799 4600 5.711506 ACCAGCATTCAACAACATGATAGAA 59.288 36.000 0.00 0.00 0.00 2.10
3812 4613 7.362574 GCCTACTTTTATGTAACCAGCATTCAA 60.363 37.037 0.00 0.00 0.00 2.69
3815 4616 6.187682 AGCCTACTTTTATGTAACCAGCATT 58.812 36.000 0.00 0.00 0.00 3.56
3816 4617 5.755849 AGCCTACTTTTATGTAACCAGCAT 58.244 37.500 0.00 0.00 0.00 3.79
3817 4618 5.174037 AGCCTACTTTTATGTAACCAGCA 57.826 39.130 0.00 0.00 0.00 4.41
3818 4619 7.255139 CCAATAGCCTACTTTTATGTAACCAGC 60.255 40.741 0.00 0.00 0.00 4.85
3819 4620 7.773690 ACCAATAGCCTACTTTTATGTAACCAG 59.226 37.037 0.00 0.00 0.00 4.00
3822 4623 7.707893 TCGACCAATAGCCTACTTTTATGTAAC 59.292 37.037 0.00 0.00 0.00 2.50
3834 4655 8.633561 CATATTGATCTATCGACCAATAGCCTA 58.366 37.037 1.01 0.00 35.68 3.93
3840 4661 6.939622 TCTGCATATTGATCTATCGACCAAT 58.060 36.000 0.00 0.00 34.16 3.16
3878 4699 6.064717 GGATTTAATGTGCATCCTACTTCCT 58.935 40.000 0.00 0.00 34.63 3.36
3880 4701 5.241728 GGGGATTTAATGTGCATCCTACTTC 59.758 44.000 0.00 0.00 37.27 3.01
3886 4707 4.162131 ACAAAGGGGATTTAATGTGCATCC 59.838 41.667 0.00 0.00 36.48 3.51
3892 4713 6.950860 AATTCCACAAAGGGGATTTAATGT 57.049 33.333 0.00 0.00 38.24 2.71
3901 4722 4.082026 GTCATGAGAAATTCCACAAAGGGG 60.082 45.833 0.00 0.00 38.24 4.79
3902 4723 4.523943 TGTCATGAGAAATTCCACAAAGGG 59.476 41.667 0.00 0.00 38.24 3.95
3919 4848 1.471287 CAACTGTGGCCTCATGTCATG 59.529 52.381 8.18 6.47 0.00 3.07
3920 4849 1.615116 CCAACTGTGGCCTCATGTCAT 60.615 52.381 8.18 0.00 38.35 3.06
3921 4850 0.250858 CCAACTGTGGCCTCATGTCA 60.251 55.000 8.18 0.00 38.35 3.58
3922 4851 2.559785 CCAACTGTGGCCTCATGTC 58.440 57.895 8.18 0.00 38.35 3.06
3923 4852 4.828409 CCAACTGTGGCCTCATGT 57.172 55.556 8.18 6.06 38.35 3.21
4060 4990 2.213499 CATTCCGATTGTAGGCAGGAC 58.787 52.381 0.00 0.00 0.00 3.85
4123 5053 6.691491 AAGGAAAGTGAAAGCACATCTCCTTA 60.691 38.462 17.31 0.00 46.48 2.69
4144 5074 3.616956 GTCATGTCTGATGACCAAGGA 57.383 47.619 3.81 0.00 41.77 3.36
4218 5155 1.826385 GCCATTGCCACTTAGACAGT 58.174 50.000 0.00 0.00 35.35 3.55
4362 5299 8.803235 CCATGTCAGAAATGGATGATATTGATT 58.197 33.333 14.10 0.00 46.44 2.57
4363 5300 7.396339 CCCATGTCAGAAATGGATGATATTGAT 59.604 37.037 20.33 0.00 46.44 2.57
4364 5301 6.717997 CCCATGTCAGAAATGGATGATATTGA 59.282 38.462 20.33 0.00 46.44 2.57
4365 5302 6.717997 TCCCATGTCAGAAATGGATGATATTG 59.282 38.462 20.33 1.98 46.44 1.90
4433 5376 1.372087 GGAATGACAGCCGAGCCAAG 61.372 60.000 0.00 0.00 0.00 3.61
4435 5378 2.268920 GGAATGACAGCCGAGCCA 59.731 61.111 0.00 0.00 0.00 4.75
4453 5396 9.143631 TGTGCATATTCAGATAGAATGATAACG 57.856 33.333 0.00 0.00 46.24 3.18
4465 5408 5.687780 TGTCAGGAATGTGCATATTCAGAT 58.312 37.500 29.89 16.70 38.51 2.90
4467 5410 5.121105 TCTGTCAGGAATGTGCATATTCAG 58.879 41.667 29.89 22.90 38.51 3.02
4543 5491 2.602660 GTGCACACAACAACAATGGAAC 59.397 45.455 13.17 0.00 0.00 3.62
4550 5498 1.067985 CAACAGGTGCACACAACAACA 60.068 47.619 20.43 0.00 35.21 3.33
4610 5558 6.214399 GTGGTGGTAGAGCAATATACTGTAC 58.786 44.000 5.03 5.03 34.14 2.90
4614 5562 4.557705 AGGTGGTGGTAGAGCAATATACT 58.442 43.478 0.00 0.00 32.64 2.12
4659 5613 4.826733 ACTGCCAGTTGATTCATACAAACA 59.173 37.500 0.00 0.00 0.00 2.83
4663 5617 5.420725 AGTACTGCCAGTTGATTCATACA 57.579 39.130 1.02 0.00 0.00 2.29
4666 5620 5.047802 CCAAAAGTACTGCCAGTTGATTCAT 60.048 40.000 1.02 0.00 0.00 2.57
4673 5627 2.065899 TGCCAAAAGTACTGCCAGTT 57.934 45.000 1.02 0.00 0.00 3.16
4675 5629 2.557924 TCATTGCCAAAAGTACTGCCAG 59.442 45.455 0.00 0.00 0.00 4.85
4817 5771 4.791411 GCAGTAAAAATGAACTGAACGGCA 60.791 41.667 6.65 0.00 44.79 5.69
4818 5772 3.668656 GCAGTAAAAATGAACTGAACGGC 59.331 43.478 6.65 0.00 44.79 5.68
4819 5773 4.854399 TGCAGTAAAAATGAACTGAACGG 58.146 39.130 6.65 0.00 44.79 4.44
4867 5826 7.443259 AATGCACCGTTACTTGTTACTAATT 57.557 32.000 0.00 0.00 0.00 1.40
4870 5832 6.864360 AAAATGCACCGTTACTTGTTACTA 57.136 33.333 0.00 0.00 0.00 1.82
5525 6487 2.352115 GACGAGTAGTAGCGCGCC 60.352 66.667 30.33 14.19 35.14 6.53
5754 6716 4.864334 CCTCTGCATCCACGCCCC 62.864 72.222 0.00 0.00 0.00 5.80
5755 6717 4.864334 CCCTCTGCATCCACGCCC 62.864 72.222 0.00 0.00 0.00 6.13
5756 6718 3.785859 TCCCTCTGCATCCACGCC 61.786 66.667 0.00 0.00 0.00 5.68
5757 6719 2.512515 GTCCCTCTGCATCCACGC 60.513 66.667 0.00 0.00 0.00 5.34
5758 6720 1.976132 ATGGTCCCTCTGCATCCACG 61.976 60.000 0.00 0.00 0.00 4.94
5759 6721 0.465097 CATGGTCCCTCTGCATCCAC 60.465 60.000 0.00 0.00 0.00 4.02
5787 6749 6.129179 GGTCATCTATTTTGAAATGGAGGGA 58.871 40.000 12.38 8.08 38.91 4.20
5788 6750 5.302823 GGGTCATCTATTTTGAAATGGAGGG 59.697 44.000 12.38 6.38 38.91 4.30
5789 6751 5.893255 TGGGTCATCTATTTTGAAATGGAGG 59.107 40.000 7.79 7.79 38.91 4.30
5790 6752 7.123247 AGTTGGGTCATCTATTTTGAAATGGAG 59.877 37.037 8.22 2.49 38.91 3.86
5791 6753 6.953520 AGTTGGGTCATCTATTTTGAAATGGA 59.046 34.615 5.21 5.21 39.67 3.41
5792 6754 7.174107 AGTTGGGTCATCTATTTTGAAATGG 57.826 36.000 0.00 0.00 0.00 3.16
5804 6766 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
5805 6767 8.674607 CCAAAGTTAGTATAAAGTTGGGTCATC 58.325 37.037 0.00 0.00 30.84 2.92
5806 6768 8.168058 ACCAAAGTTAGTATAAAGTTGGGTCAT 58.832 33.333 13.15 0.00 40.62 3.06
5807 6769 7.519927 ACCAAAGTTAGTATAAAGTTGGGTCA 58.480 34.615 13.15 0.00 40.62 4.02
5808 6770 7.991084 ACCAAAGTTAGTATAAAGTTGGGTC 57.009 36.000 13.15 0.00 40.62 4.46
5809 6771 8.439172 TGTACCAAAGTTAGTATAAAGTTGGGT 58.561 33.333 8.31 8.31 44.72 4.51
5810 6772 8.851541 TGTACCAAAGTTAGTATAAAGTTGGG 57.148 34.615 13.15 5.61 38.41 4.12
5818 6780 9.810870 ACCCAATTTTGTACCAAAGTTAGTATA 57.189 29.630 0.00 0.00 0.00 1.47
5819 6781 8.715190 ACCCAATTTTGTACCAAAGTTAGTAT 57.285 30.769 0.00 0.00 0.00 2.12
5820 6782 7.778853 TGACCCAATTTTGTACCAAAGTTAGTA 59.221 33.333 0.00 0.00 0.00 1.82
5821 6783 6.608002 TGACCCAATTTTGTACCAAAGTTAGT 59.392 34.615 0.00 0.00 0.00 2.24
5822 6784 7.045126 TGACCCAATTTTGTACCAAAGTTAG 57.955 36.000 0.00 0.00 0.00 2.34
5823 6785 7.507616 AGATGACCCAATTTTGTACCAAAGTTA 59.492 33.333 0.00 0.00 0.00 2.24
5824 6786 5.941555 TGACCCAATTTTGTACCAAAGTT 57.058 34.783 0.00 0.00 0.00 2.66
5825 6787 5.838521 AGATGACCCAATTTTGTACCAAAGT 59.161 36.000 0.00 0.00 0.00 2.66
5826 6788 6.345096 AGATGACCCAATTTTGTACCAAAG 57.655 37.500 0.00 0.00 0.00 2.77
5827 6789 8.429237 AATAGATGACCCAATTTTGTACCAAA 57.571 30.769 0.00 0.00 0.00 3.28
5828 6790 8.429237 AAATAGATGACCCAATTTTGTACCAA 57.571 30.769 0.00 0.00 0.00 3.67
5829 6791 8.310382 CAAAATAGATGACCCAATTTTGTACCA 58.690 33.333 9.93 0.00 41.26 3.25
5830 6792 7.763985 CCAAAATAGATGACCCAATTTTGTACC 59.236 37.037 14.67 0.00 43.14 3.34
5831 6793 8.527810 TCCAAAATAGATGACCCAATTTTGTAC 58.472 33.333 14.67 0.00 43.14 2.90
5832 6794 8.657387 TCCAAAATAGATGACCCAATTTTGTA 57.343 30.769 14.67 1.18 43.14 2.41
5833 6795 7.552050 TCCAAAATAGATGACCCAATTTTGT 57.448 32.000 14.67 0.00 43.14 2.83
5834 6796 7.063308 CGTTCCAAAATAGATGACCCAATTTTG 59.937 37.037 10.80 10.80 43.77 2.44
5835 6797 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
5836 6798 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
5837 6799 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
5838 6800 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
5839 6801 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5840 6802 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5841 6803 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5842 6804 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5843 6805 4.514401 ACCTCCGTTCCAAAATAGATGAC 58.486 43.478 0.00 0.00 0.00 3.06
5844 6806 4.837093 ACCTCCGTTCCAAAATAGATGA 57.163 40.909 0.00 0.00 0.00 2.92
5845 6807 5.671493 ACTACCTCCGTTCCAAAATAGATG 58.329 41.667 0.00 0.00 0.00 2.90
5846 6808 5.952347 ACTACCTCCGTTCCAAAATAGAT 57.048 39.130 0.00 0.00 0.00 1.98
5847 6809 5.716228 TGTACTACCTCCGTTCCAAAATAGA 59.284 40.000 0.00 0.00 0.00 1.98
5848 6810 5.969423 TGTACTACCTCCGTTCCAAAATAG 58.031 41.667 0.00 0.00 0.00 1.73
5849 6811 5.999205 TGTACTACCTCCGTTCCAAAATA 57.001 39.130 0.00 0.00 0.00 1.40
5850 6812 4.895668 TGTACTACCTCCGTTCCAAAAT 57.104 40.909 0.00 0.00 0.00 1.82
5851 6813 4.686191 TTGTACTACCTCCGTTCCAAAA 57.314 40.909 0.00 0.00 0.00 2.44
5852 6814 4.040706 ACATTGTACTACCTCCGTTCCAAA 59.959 41.667 0.00 0.00 0.00 3.28
5853 6815 3.579586 ACATTGTACTACCTCCGTTCCAA 59.420 43.478 0.00 0.00 0.00 3.53
5854 6816 3.056393 CACATTGTACTACCTCCGTTCCA 60.056 47.826 0.00 0.00 0.00 3.53
5855 6817 3.056322 ACACATTGTACTACCTCCGTTCC 60.056 47.826 0.00 0.00 0.00 3.62
5856 6818 4.184079 ACACATTGTACTACCTCCGTTC 57.816 45.455 0.00 0.00 0.00 3.95
5857 6819 5.655532 AGATACACATTGTACTACCTCCGTT 59.344 40.000 0.00 0.00 35.42 4.44
5858 6820 5.067413 CAGATACACATTGTACTACCTCCGT 59.933 44.000 0.00 0.00 35.42 4.69
5859 6821 5.067413 ACAGATACACATTGTACTACCTCCG 59.933 44.000 0.00 0.00 35.42 4.63
5860 6822 6.096423 TGACAGATACACATTGTACTACCTCC 59.904 42.308 0.00 0.00 35.42 4.30
5861 6823 6.973474 GTGACAGATACACATTGTACTACCTC 59.027 42.308 0.00 0.00 35.42 3.85
5862 6824 6.404403 CGTGACAGATACACATTGTACTACCT 60.404 42.308 0.00 0.00 35.42 3.08
5863 6825 5.742453 CGTGACAGATACACATTGTACTACC 59.258 44.000 0.00 0.00 35.42 3.18
5864 6826 6.320171 ACGTGACAGATACACATTGTACTAC 58.680 40.000 0.00 0.00 35.42 2.73
5865 6827 6.505044 ACGTGACAGATACACATTGTACTA 57.495 37.500 0.00 0.00 35.42 1.82
5866 6828 5.386958 ACGTGACAGATACACATTGTACT 57.613 39.130 0.00 0.00 35.42 2.73
5894 6856 2.418368 TAAATGGCGAGCCTTGTCAT 57.582 45.000 15.75 0.00 36.94 3.06
5922 6884 7.601886 CACCTCCATTATTGTACTGATCTCATC 59.398 40.741 0.00 0.00 0.00 2.92
5923 6885 7.448420 CACCTCCATTATTGTACTGATCTCAT 58.552 38.462 0.00 0.00 0.00 2.90
5924 6886 6.183361 CCACCTCCATTATTGTACTGATCTCA 60.183 42.308 0.00 0.00 0.00 3.27
5925 6887 6.042093 TCCACCTCCATTATTGTACTGATCTC 59.958 42.308 0.00 0.00 0.00 2.75
5926 6888 5.905331 TCCACCTCCATTATTGTACTGATCT 59.095 40.000 0.00 0.00 0.00 2.75
5967 6929 2.869636 GCAAAATCCATCGGCAAAACCA 60.870 45.455 0.00 0.00 39.03 3.67
5991 6953 2.331194 CTTGCTTGCGAAAAATCCTGG 58.669 47.619 0.00 0.00 0.00 4.45
6001 6963 1.377202 GTCCCATCCTTGCTTGCGA 60.377 57.895 0.00 0.00 0.00 5.10
6026 6988 2.879462 CGCGCCTTCACCTACGAC 60.879 66.667 0.00 0.00 0.00 4.34
6062 7024 1.421410 GGTACGCAAGGATCTGCACG 61.421 60.000 7.61 3.07 42.77 5.34
6063 7025 0.108138 AGGTACGCAAGGATCTGCAC 60.108 55.000 7.61 0.00 43.08 4.57
6093 7055 1.447314 GGAACCTACGAGTTGCCCG 60.447 63.158 0.00 0.00 32.42 6.13
6113 7075 1.746517 GAACCGTGTGGAGGAGTGT 59.253 57.895 0.00 0.00 39.21 3.55
6121 7083 0.318614 GCAACATTGGAACCGTGTGG 60.319 55.000 0.00 0.00 42.84 4.17
6127 7089 0.451783 CGCCTAGCAACATTGGAACC 59.548 55.000 0.00 0.00 0.00 3.62
6131 7093 2.415893 CCTTTTCGCCTAGCAACATTGG 60.416 50.000 0.00 0.00 0.00 3.16
6133 7095 2.749621 CTCCTTTTCGCCTAGCAACATT 59.250 45.455 0.00 0.00 0.00 2.71
6134 7096 2.359900 CTCCTTTTCGCCTAGCAACAT 58.640 47.619 0.00 0.00 0.00 2.71
6135 7097 1.610624 CCTCCTTTTCGCCTAGCAACA 60.611 52.381 0.00 0.00 0.00 3.33
6136 7098 1.087501 CCTCCTTTTCGCCTAGCAAC 58.912 55.000 0.00 0.00 0.00 4.17
6137 7099 0.676782 GCCTCCTTTTCGCCTAGCAA 60.677 55.000 0.00 0.00 0.00 3.91
6138 7100 1.078426 GCCTCCTTTTCGCCTAGCA 60.078 57.895 0.00 0.00 0.00 3.49
6168 7465 0.733909 GGCTCACAATTCGCAAAGGC 60.734 55.000 0.00 0.00 0.00 4.35
6172 7469 2.560861 GCGGCTCACAATTCGCAA 59.439 55.556 0.00 0.00 46.33 4.85
6174 7471 2.583685 GAAGGCGGCTCACAATTCGC 62.584 60.000 13.70 0.00 46.35 4.70
6175 7472 1.425428 GAAGGCGGCTCACAATTCG 59.575 57.895 13.70 0.00 0.00 3.34
6176 7473 1.425428 CGAAGGCGGCTCACAATTC 59.575 57.895 13.70 3.68 0.00 2.17
6177 7474 2.690778 GCGAAGGCGGCTCACAATT 61.691 57.895 13.70 0.00 38.16 2.32
6178 7475 3.127533 GCGAAGGCGGCTCACAAT 61.128 61.111 13.70 0.00 38.16 2.71
6258 7556 2.945080 ACCCATCCTGATGCACATAG 57.055 50.000 1.49 0.00 37.49 2.23
6260 7558 1.567649 AGAACCCATCCTGATGCACAT 59.432 47.619 1.49 0.00 37.49 3.21
6266 7564 3.312890 CCTACTGAGAACCCATCCTGAT 58.687 50.000 0.00 0.00 0.00 2.90
6269 7567 1.366435 ACCCTACTGAGAACCCATCCT 59.634 52.381 0.00 0.00 0.00 3.24
6415 7716 1.523258 GACCTCGACGAGATCCGGA 60.523 63.158 26.11 6.61 43.93 5.14
6505 7807 2.103373 TGAGGAAGAAGGATCTCCGTG 58.897 52.381 0.00 0.00 42.08 4.94
6514 7816 0.818296 ACCGACGATGAGGAAGAAGG 59.182 55.000 0.00 0.00 0.00 3.46
6567 7873 1.171308 CATCCCTCCAGCAACAACAG 58.829 55.000 0.00 0.00 0.00 3.16
6623 7929 1.141053 AGAACTGGGATATGGTTCCGC 59.859 52.381 0.00 0.00 39.82 5.54
6632 7938 4.782691 TCCACATGAAAGAGAACTGGGATA 59.217 41.667 0.00 0.00 0.00 2.59
6637 7943 3.755378 CCCTTCCACATGAAAGAGAACTG 59.245 47.826 0.00 0.00 31.06 3.16
6651 7957 2.615493 CCGATGTATATGCCCCTTCCAC 60.615 54.545 0.00 0.00 0.00 4.02
6663 7969 2.101082 TGGCTTTGCGTACCGATGTATA 59.899 45.455 0.00 0.00 0.00 1.47
6697 8003 0.540133 TCCAACATGCATGCACCAGT 60.540 50.000 25.37 18.85 0.00 4.00
6709 8015 2.241160 ACACACACATGCATCCAACAT 58.759 42.857 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.