Multiple sequence alignment - TraesCS5B01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G400000 chr5B 100.000 9042 0 0 1 9042 577310390 577301349 0.000000e+00 16698.0
1 TraesCS5B01G400000 chr5B 80.916 262 41 6 8788 9042 584860557 584860816 1.990000e-46 198.0
2 TraesCS5B01G400000 chr5B 100.000 38 0 0 1574 1611 577308753 577308716 4.530000e-08 71.3
3 TraesCS5B01G400000 chr5B 100.000 38 0 0 1638 1675 577308817 577308780 4.530000e-08 71.3
4 TraesCS5B01G400000 chr5A 89.755 4607 281 81 1774 6271 590603642 590599118 0.000000e+00 5716.0
5 TraesCS5B01G400000 chr5A 93.877 1976 78 19 6553 8504 590599044 590597088 0.000000e+00 2939.0
6 TraesCS5B01G400000 chr5A 86.832 1610 145 39 15 1590 590606197 590604621 0.000000e+00 1736.0
7 TraesCS5B01G400000 chr5A 95.146 206 10 0 8504 8709 590597048 590596843 8.760000e-85 326.0
8 TraesCS5B01G400000 chr5A 80.324 432 61 12 7782 8193 105706230 105705803 1.140000e-78 305.0
9 TraesCS5B01G400000 chr5A 94.286 140 8 0 6273 6412 492896795 492896656 1.980000e-51 215.0
10 TraesCS5B01G400000 chr5A 95.506 89 4 0 1699 1787 590604197 590604109 9.460000e-30 143.0
11 TraesCS5B01G400000 chr5D 92.517 3381 140 42 395 3703 469561218 469557879 0.000000e+00 4737.0
12 TraesCS5B01G400000 chr5D 95.144 2574 78 18 3736 6271 469557880 469555316 0.000000e+00 4017.0
13 TraesCS5B01G400000 chr5D 93.616 1629 66 21 6887 8504 469554774 469553173 0.000000e+00 2398.0
14 TraesCS5B01G400000 chr5D 98.371 307 4 1 6553 6858 469555242 469554936 1.030000e-148 538.0
15 TraesCS5B01G400000 chr5D 88.591 298 29 2 1 297 469561509 469561216 3.100000e-94 357.0
16 TraesCS5B01G400000 chr5D 97.087 206 6 0 8504 8709 469553141 469552936 1.870000e-91 348.0
17 TraesCS5B01G400000 chr5D 86.780 295 32 5 8754 9042 290382792 290383085 1.130000e-83 322.0
18 TraesCS5B01G400000 chr5D 92.896 183 13 0 8860 9042 469551653 469551471 5.380000e-67 267.0
19 TraesCS5B01G400000 chr5D 92.568 148 11 0 6251 6398 241844058 241844205 7.110000e-51 213.0
20 TraesCS5B01G400000 chr5D 95.420 131 6 0 6273 6403 154533574 154533444 9.200000e-50 209.0
21 TraesCS5B01G400000 chr5D 79.401 267 45 4 8782 9041 451117163 451117426 7.210000e-41 180.0
22 TraesCS5B01G400000 chr5D 91.753 97 6 2 6470 6565 240428126 240428031 5.700000e-27 134.0
23 TraesCS5B01G400000 chr5D 74.672 229 44 8 8801 9024 331579433 331579652 1.250000e-13 89.8
24 TraesCS5B01G400000 chr5D 100.000 38 0 0 1574 1611 469559989 469559952 4.530000e-08 71.3
25 TraesCS5B01G400000 chr5D 100.000 38 0 0 1638 1675 469560054 469560017 4.530000e-08 71.3
26 TraesCS5B01G400000 chr5D 100.000 35 0 0 6854 6888 469554889 469554855 2.110000e-06 65.8
27 TraesCS5B01G400000 chr7A 80.272 441 64 11 7773 8193 700497653 700498090 2.450000e-80 311.0
28 TraesCS5B01G400000 chr7A 79.167 432 66 11 7782 8193 665822518 665822091 2.490000e-70 278.0
29 TraesCS5B01G400000 chr2A 80.282 426 66 9 7773 8190 41111337 41111752 1.140000e-78 305.0
30 TraesCS5B01G400000 chr2A 84.585 253 30 5 8790 9036 473733273 473733522 9.070000e-60 243.0
31 TraesCS5B01G400000 chr2A 95.489 133 5 1 6265 6397 773183324 773183455 2.560000e-50 211.0
32 TraesCS5B01G400000 chr3D 87.179 234 26 4 8789 9021 358152015 358151785 6.960000e-66 263.0
33 TraesCS5B01G400000 chr3D 93.571 140 8 1 6260 6398 6168876 6168737 3.310000e-49 207.0
34 TraesCS5B01G400000 chr3D 92.632 95 6 1 6468 6562 26654126 26654219 1.580000e-27 135.0
35 TraesCS5B01G400000 chr3D 92.553 94 7 0 6467 6560 411724342 411724435 1.580000e-27 135.0
36 TraesCS5B01G400000 chr7B 82.759 261 39 2 8788 9042 110314577 110314317 2.540000e-55 228.0
37 TraesCS5B01G400000 chr1D 85.845 219 24 4 8788 8999 193659536 193659318 9.130000e-55 226.0
38 TraesCS5B01G400000 chr1D 82.171 258 35 7 8787 9041 442458587 442458338 2.560000e-50 211.0
39 TraesCS5B01G400000 chr1D 82.231 242 36 3 8800 9035 35093363 35093603 1.540000e-47 202.0
40 TraesCS5B01G400000 chr1D 80.567 247 29 10 8802 9041 56743353 56743587 1.210000e-38 172.0
41 TraesCS5B01G400000 chr1D 78.740 254 44 8 8788 9034 355515520 355515770 2.610000e-35 161.0
42 TraesCS5B01G400000 chr1D 90.909 99 8 1 6465 6562 286707550 286707452 2.050000e-26 132.0
43 TraesCS5B01G400000 chr1D 83.448 145 19 5 8801 8942 430040517 430040375 7.370000e-26 130.0
44 TraesCS5B01G400000 chr1D 81.379 145 22 5 8801 8942 430001373 430001515 7.420000e-21 113.0
45 TraesCS5B01G400000 chr6D 96.241 133 5 0 6270 6402 126631752 126631884 1.530000e-52 219.0
46 TraesCS5B01G400000 chr6D 88.889 108 9 3 6447 6554 455101208 455101312 7.370000e-26 130.0
47 TraesCS5B01G400000 chr6A 94.815 135 7 0 6263 6397 545123592 545123726 2.560000e-50 211.0
48 TraesCS5B01G400000 chr2B 94.245 139 7 1 6261 6398 199013715 199013853 2.560000e-50 211.0
49 TraesCS5B01G400000 chr2D 94.776 134 7 0 6267 6400 331604565 331604432 9.200000e-50 209.0
50 TraesCS5B01G400000 chr2D 94.444 90 5 0 6466 6555 619321005 619321094 1.220000e-28 139.0
51 TraesCS5B01G400000 chr1A 84.475 219 26 4 8788 8999 240497999 240497782 9.200000e-50 209.0
52 TraesCS5B01G400000 chr1A 81.818 143 21 5 8803 8942 527660619 527660479 2.060000e-21 115.0
53 TraesCS5B01G400000 chr3B 79.012 324 37 16 4403 4715 68405612 68405915 9.260000e-45 193.0
54 TraesCS5B01G400000 chr3B 80.412 97 15 1 7773 7865 737671013 737671109 4.530000e-08 71.3
55 TraesCS5B01G400000 chrUn 79.545 308 32 12 4420 4715 463918719 463918431 3.330000e-44 191.0
56 TraesCS5B01G400000 chr4B 80.315 254 44 3 8788 9035 502099126 502099379 4.310000e-43 187.0
57 TraesCS5B01G400000 chr4B 77.826 230 35 9 8801 9024 572228014 572227795 2.650000e-25 128.0
58 TraesCS5B01G400000 chr4A 80.153 262 35 10 8787 9040 463830413 463830161 7.210000e-41 180.0
59 TraesCS5B01G400000 chr4A 93.069 101 6 1 6467 6567 440964820 440964919 7.320000e-31 147.0
60 TraesCS5B01G400000 chr1B 80.083 241 42 3 8800 9035 53380264 53380503 3.360000e-39 174.0
61 TraesCS5B01G400000 chr1B 78.244 262 45 8 8788 9042 478527480 478527736 3.380000e-34 158.0
62 TraesCS5B01G400000 chr4D 82.941 170 22 4 8788 8951 360091537 360091705 7.320000e-31 147.0
63 TraesCS5B01G400000 chr4D 91.429 70 3 3 8786 8854 482153443 482153510 9.670000e-15 93.5
64 TraesCS5B01G400000 chr4D 90.385 52 5 0 8991 9042 484006981 484006930 1.630000e-07 69.4
65 TraesCS5B01G400000 chr7D 93.478 92 6 0 6463 6554 485090871 485090962 4.400000e-28 137.0
66 TraesCS5B01G400000 chr6B 90.291 103 9 1 6460 6561 216509748 216509850 5.700000e-27 134.0
67 TraesCS5B01G400000 chr6B 79.433 141 24 5 20 159 175331893 175332029 2.690000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G400000 chr5B 577301349 577310390 9041 True 5613.533333 16698 100.0000 1 9042 3 chr5B.!!$R1 9041
1 TraesCS5B01G400000 chr5A 590596843 590606197 9354 True 2172.000000 5716 92.2232 15 8709 5 chr5A.!!$R3 8694
2 TraesCS5B01G400000 chr5D 469551471 469561509 10038 True 1287.040000 4737 95.8222 1 9042 10 chr5D.!!$R3 9041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 351 0.035881 CTTCTCTTGGGCAGCAGTCA 59.964 55.000 0.00 0.0 0.00 3.41 F
760 770 0.178950 AGCTCTCCCAGACAGACACA 60.179 55.000 0.00 0.0 0.00 3.72 F
2432 3269 0.109723 TTTTCCTGAGGGTTCCACCG 59.890 55.000 0.00 0.0 39.83 4.94 F
2444 3281 2.232941 GGTTCCACCGTCTGACTTATGA 59.767 50.000 6.21 0.0 0.00 2.15 F
3494 4382 2.076100 TGCGTGTTCTTATTCTGCCTG 58.924 47.619 0.00 0.0 0.00 4.85 F
4779 5734 1.029681 AACGGGGAAGTTGCTTGTTC 58.970 50.000 0.00 0.0 32.39 3.18 F
6284 7293 0.178970 TATAGTGCTCCCTCCGTCCC 60.179 60.000 0.00 0.0 0.00 4.46 F
6482 7491 0.108281 GTTTGCTACTCCCTCCGTCC 60.108 60.000 0.00 0.0 0.00 4.79 F
6486 7495 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1326 0.545787 ACCCGGGAACACATAGACCA 60.546 55.000 32.02 0.0 0.00 4.02 R
2704 3547 0.620556 TCCTCCTGACCATCCTTTGC 59.379 55.000 0.00 0.0 0.00 3.68 R
3374 4261 0.312102 GAACACAAAGCACCTGAGCC 59.688 55.000 0.00 0.0 34.23 4.70 R
3678 4607 2.092968 AGCACAGTTTGAGAGAACCACA 60.093 45.455 0.00 0.0 0.00 4.17 R
4854 5809 0.735471 GATCCGCCCTTTTTCTCTGC 59.265 55.000 0.00 0.0 0.00 4.26 R
6380 7389 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 R
7620 8768 1.880941 ACCAGACCCTCAGTTATCCC 58.119 55.000 0.00 0.0 0.00 3.85 R
7993 9163 2.102420 CCATATGTCCTTGGCGTACTCA 59.898 50.000 1.24 0.0 0.00 3.41 R
8097 9267 2.595124 TCGCTGAATCGAGGCAAATA 57.405 45.000 0.00 0.0 34.09 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.703416 TCGATGCTGCTTCTTGTCATT 58.297 42.857 12.85 0.00 0.00 2.57
79 80 0.239082 TGCTGCTTCTTGTCATTGCG 59.761 50.000 0.00 0.00 0.00 4.85
81 82 0.877071 CTGCTTCTTGTCATTGCGGT 59.123 50.000 0.00 0.00 0.00 5.68
88 89 4.166011 GTCATTGCGGTGAGGCGC 62.166 66.667 0.00 0.00 35.06 6.53
110 111 3.485346 GAGGTTGGCGTGTCCCCAA 62.485 63.158 0.00 0.00 39.91 4.12
127 128 4.658901 TCCCCAAATCTAGTTATCTGGGTC 59.341 45.833 13.41 0.00 41.73 4.46
167 168 4.466726 AGGTTTATCTCAGTGGTAGTGTCC 59.533 45.833 0.00 0.00 0.00 4.02
175 177 0.037605 GTGGTAGTGTCCCGTGAAGG 60.038 60.000 0.00 0.00 40.63 3.46
207 209 3.452627 GACTATGTGTCTTGGTCCTCCAT 59.547 47.826 0.00 0.00 42.21 3.41
218 220 2.912956 TGGTCCTCCATGCTCTAGTTTT 59.087 45.455 0.00 0.00 39.03 2.43
223 225 4.225942 TCCTCCATGCTCTAGTTTTGACAT 59.774 41.667 0.00 0.00 0.00 3.06
238 240 1.327303 GACATGTGAAGGTTGGCCAA 58.673 50.000 16.05 16.05 37.19 4.52
246 248 1.455383 AAGGTTGGCCAACTTCAGCG 61.455 55.000 39.80 0.00 40.94 5.18
248 250 1.733526 GTTGGCCAACTTCAGCGTT 59.266 52.632 36.26 0.00 38.25 4.84
259 261 4.680237 CAGCGTTGTCGGGGAGCA 62.680 66.667 0.00 0.00 37.56 4.26
286 288 5.049680 TGAGATTTGTGTTCCTTTACTTCGC 60.050 40.000 0.00 0.00 0.00 4.70
300 302 3.240134 TTCGCCTGGTCAGACCTGC 62.240 63.158 20.82 20.01 39.58 4.85
303 305 3.314331 CCTGGTCAGACCTGCGGT 61.314 66.667 20.82 0.00 39.58 5.68
309 311 3.568443 TGGTCAGACCTGCGGTATTATA 58.432 45.455 20.82 0.00 39.58 0.98
312 314 5.776208 TGGTCAGACCTGCGGTATTATATAA 59.224 40.000 20.82 0.00 39.58 0.98
313 315 6.071560 TGGTCAGACCTGCGGTATTATATAAG 60.072 42.308 20.82 0.00 39.58 1.73
325 327 6.980978 CGGTATTATATAAGCCCTCTCATGTG 59.019 42.308 11.20 0.00 0.00 3.21
330 332 8.677148 TTATATAAGCCCTCTCATGTGTTTTC 57.323 34.615 0.00 0.00 0.00 2.29
336 338 4.805609 GCCCTCTCATGTGTTTTCTTCTCT 60.806 45.833 0.00 0.00 0.00 3.10
340 342 5.065914 TCTCATGTGTTTTCTTCTCTTGGG 58.934 41.667 0.00 0.00 0.00 4.12
344 346 1.956477 TGTTTTCTTCTCTTGGGCAGC 59.044 47.619 0.00 0.00 0.00 5.25
349 351 0.035881 CTTCTCTTGGGCAGCAGTCA 59.964 55.000 0.00 0.00 0.00 3.41
355 357 0.602638 TTGGGCAGCAGTCAGTTACG 60.603 55.000 0.00 0.00 0.00 3.18
372 374 2.379634 CGCAAATCGTGGTCGCTGA 61.380 57.895 0.00 0.00 36.96 4.26
373 375 1.132640 GCAAATCGTGGTCGCTGAC 59.867 57.895 0.79 0.79 36.96 3.51
390 392 4.679106 CGCTGACATCTTCTAGTCCACATT 60.679 45.833 0.00 0.00 33.89 2.71
445 448 8.755941 GCTCCTTATTTTTCAACAAGTTTTCTC 58.244 33.333 0.00 0.00 0.00 2.87
514 517 0.822532 GCCCATGGATGCAGGAGAAG 60.823 60.000 15.22 0.00 0.00 2.85
534 537 2.115343 GAAGACATTCCACACCCCTC 57.885 55.000 0.00 0.00 0.00 4.30
630 633 4.129380 CCTTTTGCCTTTTTCCAGGAAAG 58.871 43.478 14.50 4.39 32.49 2.62
650 653 9.154632 AGGAAAGGAAAAACTAAACCATTACAT 57.845 29.630 0.00 0.00 0.00 2.29
664 674 3.503365 CATTACATGAGGCCATTCCCAT 58.497 45.455 5.01 0.00 34.51 4.00
677 687 4.151883 CCATTCCCATCCGTCCAATAAAT 58.848 43.478 0.00 0.00 0.00 1.40
743 753 2.778679 CGCTGCAACGGAACTAGC 59.221 61.111 0.45 0.00 0.00 3.42
744 754 1.738099 CGCTGCAACGGAACTAGCT 60.738 57.895 0.45 0.00 32.43 3.32
745 755 1.687494 CGCTGCAACGGAACTAGCTC 61.687 60.000 0.45 0.00 32.43 4.09
746 756 0.390472 GCTGCAACGGAACTAGCTCT 60.390 55.000 0.00 0.00 0.00 4.09
747 757 1.634702 CTGCAACGGAACTAGCTCTC 58.365 55.000 0.00 0.00 0.00 3.20
749 759 0.460459 GCAACGGAACTAGCTCTCCC 60.460 60.000 0.00 0.00 0.00 4.30
750 760 0.895530 CAACGGAACTAGCTCTCCCA 59.104 55.000 0.00 0.00 0.00 4.37
751 761 1.134965 CAACGGAACTAGCTCTCCCAG 60.135 57.143 0.00 0.00 0.00 4.45
752 762 0.331954 ACGGAACTAGCTCTCCCAGA 59.668 55.000 0.00 0.00 0.00 3.86
754 764 1.853963 GGAACTAGCTCTCCCAGACA 58.146 55.000 0.00 0.00 0.00 3.41
760 770 0.178950 AGCTCTCCCAGACAGACACA 60.179 55.000 0.00 0.00 0.00 3.72
781 798 3.503363 GCACATGAGCCACGCCTC 61.503 66.667 3.43 0.00 0.00 4.70
782 799 2.821366 CACATGAGCCACGCCTCC 60.821 66.667 0.00 0.00 0.00 4.30
784 801 4.100084 CATGAGCCACGCCTCCCA 62.100 66.667 0.00 0.00 0.00 4.37
785 802 3.092511 ATGAGCCACGCCTCCCAT 61.093 61.111 0.00 0.00 0.00 4.00
786 803 3.112205 ATGAGCCACGCCTCCCATC 62.112 63.158 0.00 0.00 0.00 3.51
787 804 4.899239 GAGCCACGCCTCCCATCG 62.899 72.222 0.00 0.00 0.00 3.84
914 937 0.179089 CAGAAGCTCCCCATCACTCG 60.179 60.000 0.00 0.00 0.00 4.18
923 946 1.464376 CCCATCACTCGCTCGGGTAT 61.464 60.000 0.00 0.00 31.80 2.73
1197 1225 1.141234 GACCGAGGAAGGTAAGCGG 59.859 63.158 0.00 0.00 46.09 5.52
1298 1326 6.058553 TGAATTTGTGATCCTCTGACTGAT 57.941 37.500 0.00 0.00 0.00 2.90
1314 1342 2.168521 ACTGATGGTCTATGTGTTCCCG 59.831 50.000 0.00 0.00 0.00 5.14
1369 1398 6.582677 TTGCTAATCTACTGCTCTAGGATC 57.417 41.667 0.00 0.00 0.00 3.36
1372 1401 5.393027 GCTAATCTACTGCTCTAGGATCTGC 60.393 48.000 0.00 0.00 0.00 4.26
1481 1510 9.884465 GTCAAGTTAGAATGATGTATTTATGGC 57.116 33.333 0.00 0.00 0.00 4.40
1499 1528 2.813754 TGGCACAGTAGCAAATTCTGAC 59.186 45.455 0.00 0.00 35.83 3.51
1685 1726 0.187117 TTCTGGTGGGTTGCCATTGA 59.813 50.000 0.00 0.00 35.19 2.57
1689 1730 0.967380 GGTGGGTTGCCATTGAGGAG 60.967 60.000 0.00 0.00 41.22 3.69
1690 1731 0.251341 GTGGGTTGCCATTGAGGAGT 60.251 55.000 0.00 0.00 41.22 3.85
1691 1732 1.004277 GTGGGTTGCCATTGAGGAGTA 59.996 52.381 0.00 0.00 41.22 2.59
1753 2108 3.077229 TGTGCAAGAATTTTCACACGG 57.923 42.857 0.00 0.00 35.11 4.94
1771 2126 3.130164 CACGGAAACAATATCCCATGCAA 59.870 43.478 0.00 0.00 33.13 4.08
1789 2624 7.116805 CCCATGCAATTTTTAGTTTTGACTCTC 59.883 37.037 0.00 0.00 0.00 3.20
1815 2651 9.630098 CGACTGTTTATACCTACTCTTTGTAAA 57.370 33.333 0.00 0.00 0.00 2.01
1937 2773 2.167693 AGACTTCACACCGTTGTTCTCA 59.832 45.455 0.00 0.00 31.66 3.27
2155 2991 7.189693 ACTGCGTTATGATGTTATATGGTTG 57.810 36.000 0.00 0.00 0.00 3.77
2291 3127 5.924475 AGTCAGGTAAGTGATTTTTGTCG 57.076 39.130 0.00 0.00 0.00 4.35
2328 3164 4.750098 AGTCCGTATCAAAATTATCGCAGG 59.250 41.667 0.00 0.00 0.00 4.85
2335 3171 3.125316 CAAAATTATCGCAGGGCCATTG 58.875 45.455 6.18 3.11 0.00 2.82
2341 3177 1.621992 TCGCAGGGCCATTGTTTTTA 58.378 45.000 6.18 0.00 0.00 1.52
2343 3179 2.564947 TCGCAGGGCCATTGTTTTTATT 59.435 40.909 6.18 0.00 0.00 1.40
2345 3181 3.750652 CGCAGGGCCATTGTTTTTATTTT 59.249 39.130 6.18 0.00 0.00 1.82
2346 3182 4.378253 CGCAGGGCCATTGTTTTTATTTTG 60.378 41.667 6.18 0.00 0.00 2.44
2352 3188 6.634837 GGGCCATTGTTTTTATTTTGAAAACG 59.365 34.615 4.39 0.00 45.39 3.60
2432 3269 0.109723 TTTTCCTGAGGGTTCCACCG 59.890 55.000 0.00 0.00 39.83 4.94
2443 3280 2.618053 GGTTCCACCGTCTGACTTATG 58.382 52.381 6.21 1.50 0.00 1.90
2444 3281 2.232941 GGTTCCACCGTCTGACTTATGA 59.767 50.000 6.21 0.00 0.00 2.15
2492 3333 4.491234 TGAAATTACGCCAAAACACGAT 57.509 36.364 0.00 0.00 0.00 3.73
2704 3547 6.645790 ATGGCCTCTTTAAGCAAATCATAG 57.354 37.500 3.32 0.00 0.00 2.23
2799 3642 6.723298 TTGGAAGTGTTGATTATGTTGGTT 57.277 33.333 0.00 0.00 0.00 3.67
2800 3643 6.723298 TGGAAGTGTTGATTATGTTGGTTT 57.277 33.333 0.00 0.00 0.00 3.27
2801 3644 7.825331 TGGAAGTGTTGATTATGTTGGTTTA 57.175 32.000 0.00 0.00 0.00 2.01
2837 3680 4.216257 TGACCTGCATGTTAGCTTCTTTTC 59.784 41.667 0.00 0.00 34.99 2.29
2838 3681 4.401925 ACCTGCATGTTAGCTTCTTTTCT 58.598 39.130 0.00 0.00 34.99 2.52
2954 3798 2.290514 TGAAGGCACTGATGGGAGAAAG 60.291 50.000 0.00 0.00 40.86 2.62
3083 3927 6.363882 ACCATCACAAAATTTTGATTTGGGT 58.636 32.000 32.20 25.91 41.03 4.51
3086 3930 4.578105 TCACAAAATTTTGATTTGGGTGCC 59.422 37.500 32.20 0.00 41.03 5.01
3213 4065 7.041098 ACAACTACTGATTCAAAGGCTAAACAG 60.041 37.037 4.72 4.72 0.00 3.16
3216 4068 4.022849 ACTGATTCAAAGGCTAAACAGTGC 60.023 41.667 9.72 0.00 36.29 4.40
3217 4069 4.144297 TGATTCAAAGGCTAAACAGTGCT 58.856 39.130 0.00 0.00 0.00 4.40
3376 4263 9.273016 TGTATATGTAAATAGAAAAGCTGAGGC 57.727 33.333 0.00 0.00 39.06 4.70
3450 4338 3.753272 CCATAACTTCTTCACCTGGTGTG 59.247 47.826 25.15 18.59 46.88 3.82
3476 4364 6.529829 TGCAATTCTTTCGGTTGTATTTATGC 59.470 34.615 0.00 0.00 0.00 3.14
3479 4367 5.211266 TCTTTCGGTTGTATTTATGCGTG 57.789 39.130 0.00 0.00 0.00 5.34
3494 4382 2.076100 TGCGTGTTCTTATTCTGCCTG 58.924 47.619 0.00 0.00 0.00 4.85
3498 4386 4.728882 GCGTGTTCTTATTCTGCCTGAATG 60.729 45.833 7.04 0.00 44.40 2.67
3500 4388 5.295292 CGTGTTCTTATTCTGCCTGAATGAT 59.705 40.000 7.04 0.00 44.40 2.45
3527 4415 4.217767 CAGCATATGCATCAGGCTACATTT 59.782 41.667 28.62 0.35 45.15 2.32
3579 4473 2.499289 CCAGATGCAGTCCAGTAGTCTT 59.501 50.000 0.00 0.00 0.00 3.01
3584 4512 5.896678 AGATGCAGTCCAGTAGTCTTTAGAT 59.103 40.000 0.00 0.00 0.00 1.98
3699 4629 2.092968 TGTGGTTCTCTCAAACTGTGCT 60.093 45.455 0.00 0.00 0.00 4.40
3703 4633 5.239525 GTGGTTCTCTCAAACTGTGCTAAAT 59.760 40.000 0.00 0.00 0.00 1.40
3706 4636 5.227569 TCTCTCAAACTGTGCTAAATCCA 57.772 39.130 0.00 0.00 0.00 3.41
3717 4647 2.295909 TGCTAAATCCACCACTGTTTGC 59.704 45.455 0.00 0.00 0.00 3.68
3718 4648 2.352715 GCTAAATCCACCACTGTTTGCC 60.353 50.000 0.00 0.00 0.00 4.52
3719 4649 1.786937 AAATCCACCACTGTTTGCCA 58.213 45.000 0.00 0.00 0.00 4.92
3764 4701 5.560953 GCAACAACTTGACTGGACAAGATAC 60.561 44.000 16.66 0.97 46.85 2.24
3813 4750 2.750815 GACAGATTTGTCCGACCCG 58.249 57.895 5.05 0.00 46.47 5.28
3826 4763 1.337823 CCGACCCGTCTTTGAACATCT 60.338 52.381 0.00 0.00 0.00 2.90
3831 4768 3.833070 ACCCGTCTTTGAACATCTCTACT 59.167 43.478 0.00 0.00 0.00 2.57
3832 4769 5.014858 ACCCGTCTTTGAACATCTCTACTA 58.985 41.667 0.00 0.00 0.00 1.82
3833 4770 5.657302 ACCCGTCTTTGAACATCTCTACTAT 59.343 40.000 0.00 0.00 0.00 2.12
3834 4771 6.154706 ACCCGTCTTTGAACATCTCTACTATT 59.845 38.462 0.00 0.00 0.00 1.73
3877 4814 4.456222 TGTTGACTTTTCCTCGTTTGTTCA 59.544 37.500 0.00 0.00 0.00 3.18
3878 4815 4.875544 TGACTTTTCCTCGTTTGTTCAG 57.124 40.909 0.00 0.00 0.00 3.02
3879 4816 4.258543 TGACTTTTCCTCGTTTGTTCAGT 58.741 39.130 0.00 0.00 0.00 3.41
3888 4828 4.167268 CTCGTTTGTTCAGTAGTAGGAGC 58.833 47.826 0.00 0.00 0.00 4.70
3984 4933 7.905604 TGTGGACAAAAGTTATCATGTCTAG 57.094 36.000 4.94 0.00 41.42 2.43
4001 4950 6.156748 TGTCTAGCTTAAGTTTGTGACTGA 57.843 37.500 4.02 0.00 39.00 3.41
4222 5171 1.135603 CATCCAACACTGTGCATTCCG 60.136 52.381 7.90 0.00 0.00 4.30
4360 5309 8.902806 TCCAGCTCCAATTAACTAATTGTATTG 58.097 33.333 16.98 11.09 46.84 1.90
4383 5332 4.643784 GCCTCATCTGTCTTCCATTCAATT 59.356 41.667 0.00 0.00 0.00 2.32
4494 5449 5.297029 GGACATTATGCAGAAACTTCTACCC 59.703 44.000 0.00 0.00 35.34 3.69
4751 5706 9.127277 TCTGTTGCTAAACTGTTTATTAAACCT 57.873 29.630 12.95 0.04 36.08 3.50
4779 5734 1.029681 AACGGGGAAGTTGCTTGTTC 58.970 50.000 0.00 0.00 32.39 3.18
4804 5759 4.836825 TCTTTGGAGTCTATTGCTGAAGG 58.163 43.478 0.00 0.00 0.00 3.46
4854 5809 5.665459 AGGAAAACATTCTATCCGAGACAG 58.335 41.667 0.00 0.00 37.05 3.51
4870 5825 0.890996 ACAGCAGAGAAAAAGGGCGG 60.891 55.000 0.00 0.00 0.00 6.13
4979 5934 4.396166 CCTAGAGTTGTTCGAATGGCAAAT 59.604 41.667 0.00 0.00 0.00 2.32
5162 6118 5.827797 GGTATCACCATCTGCCATTTTCTTA 59.172 40.000 0.00 0.00 38.42 2.10
5167 6123 6.889177 TCACCATCTGCCATTTTCTTATGTTA 59.111 34.615 0.00 0.00 0.00 2.41
5593 6550 6.861065 TTTTGGACTAGAAACATGTGTCTC 57.139 37.500 22.05 8.40 0.00 3.36
5724 6681 5.893897 AGAAGATGAAAGAAATGAGTGCC 57.106 39.130 0.00 0.00 0.00 5.01
5850 6807 5.518847 TGTCGCAGCTACTGTAAATTATGAC 59.481 40.000 0.00 0.00 33.43 3.06
5857 6814 7.172190 CAGCTACTGTAAATTATGACCCTGATG 59.828 40.741 0.00 0.00 0.00 3.07
5909 6866 7.280876 GTGTCTTCAATGGCACTTATCATTCTA 59.719 37.037 0.00 0.00 31.95 2.10
5966 6923 4.001652 GACTAGGGGTTACTGAAAAGCAC 58.998 47.826 0.00 0.00 0.00 4.40
6099 7108 6.128661 CCACAATTGTTCTGATGCTGATTTTG 60.129 38.462 8.77 0.00 0.00 2.44
6273 7282 9.707957 ATATTCTGGCTACTCTTATATAGTGCT 57.292 33.333 0.00 0.00 0.00 4.40
6274 7283 7.455641 TTCTGGCTACTCTTATATAGTGCTC 57.544 40.000 0.00 0.00 0.00 4.26
6275 7284 5.946972 TCTGGCTACTCTTATATAGTGCTCC 59.053 44.000 0.00 0.00 0.00 4.70
6276 7285 5.017490 TGGCTACTCTTATATAGTGCTCCC 58.983 45.833 0.00 0.00 0.00 4.30
6277 7286 5.222358 TGGCTACTCTTATATAGTGCTCCCT 60.222 44.000 0.00 0.00 0.00 4.20
6278 7287 5.358725 GGCTACTCTTATATAGTGCTCCCTC 59.641 48.000 0.00 0.00 0.00 4.30
6279 7288 5.358725 GCTACTCTTATATAGTGCTCCCTCC 59.641 48.000 0.00 0.00 0.00 4.30
6280 7289 4.337145 ACTCTTATATAGTGCTCCCTCCG 58.663 47.826 0.00 0.00 0.00 4.63
6281 7290 4.202588 ACTCTTATATAGTGCTCCCTCCGT 60.203 45.833 0.00 0.00 0.00 4.69
6282 7291 4.333690 TCTTATATAGTGCTCCCTCCGTC 58.666 47.826 0.00 0.00 0.00 4.79
6283 7292 1.926108 ATATAGTGCTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
6284 7293 0.178970 TATAGTGCTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
6285 7294 2.238319 ATAGTGCTCCCTCCGTCCCA 62.238 60.000 0.00 0.00 0.00 4.37
6286 7295 2.449967 TAGTGCTCCCTCCGTCCCAA 62.450 60.000 0.00 0.00 0.00 4.12
6287 7296 2.528127 TGCTCCCTCCGTCCCAAA 60.528 61.111 0.00 0.00 0.00 3.28
6288 7297 2.150719 TGCTCCCTCCGTCCCAAAA 61.151 57.895 0.00 0.00 0.00 2.44
6289 7298 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
6290 7299 0.323451 GCTCCCTCCGTCCCAAAATT 60.323 55.000 0.00 0.00 0.00 1.82
6291 7300 1.751437 CTCCCTCCGTCCCAAAATTC 58.249 55.000 0.00 0.00 0.00 2.17
6292 7301 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6293 7302 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6294 7303 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6295 7304 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6296 7305 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6297 7306 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6298 7307 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6299 7308 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6300 7309 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
6301 7310 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6302 7311 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6303 7312 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6304 7313 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6305 7314 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
6306 7315 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6307 7316 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6308 7317 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
6309 7318 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
6310 7319 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
6315 7324 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
6316 7325 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
6317 7326 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
6318 7327 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
6319 7328 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
6320 7329 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
6321 7330 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
6322 7331 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
6323 7332 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
6324 7333 7.509546 AGATTTGTCCAAATACGGATGTATCT 58.490 34.615 5.29 0.00 40.42 1.98
6325 7334 8.647796 AGATTTGTCCAAATACGGATGTATCTA 58.352 33.333 5.29 0.00 40.42 1.98
6326 7335 8.833231 ATTTGTCCAAATACGGATGTATCTAG 57.167 34.615 3.49 0.00 40.42 2.43
6327 7336 6.971726 TGTCCAAATACGGATGTATCTAGT 57.028 37.500 0.00 0.00 40.42 2.57
6328 7337 7.356089 TGTCCAAATACGGATGTATCTAGTT 57.644 36.000 0.00 0.00 40.42 2.24
6329 7338 8.467963 TGTCCAAATACGGATGTATCTAGTTA 57.532 34.615 0.00 0.00 40.42 2.24
6330 7339 8.355169 TGTCCAAATACGGATGTATCTAGTTAC 58.645 37.037 4.30 4.30 40.42 2.50
6331 7340 8.355169 GTCCAAATACGGATGTATCTAGTTACA 58.645 37.037 14.48 14.48 40.42 2.41
6332 7341 9.085645 TCCAAATACGGATGTATCTAGTTACAT 57.914 33.333 21.25 21.25 43.70 2.29
6333 7342 9.706691 CCAAATACGGATGTATCTAGTTACATT 57.293 33.333 21.77 12.38 41.67 2.71
6339 7348 9.745880 ACGGATGTATCTAGTTACATTTTAGTG 57.254 33.333 21.77 13.11 41.67 2.74
6340 7349 9.745880 CGGATGTATCTAGTTACATTTTAGTGT 57.254 33.333 21.77 4.20 41.67 3.55
6371 7380 8.234136 ACATCCGTATCTAGACAAATGTAAGA 57.766 34.615 0.00 1.82 0.00 2.10
6372 7381 8.353684 ACATCCGTATCTAGACAAATGTAAGAG 58.646 37.037 0.00 0.00 0.00 2.85
6373 7382 8.568794 CATCCGTATCTAGACAAATGTAAGAGA 58.431 37.037 0.00 0.95 0.00 3.10
6374 7383 8.515695 TCCGTATCTAGACAAATGTAAGAGAA 57.484 34.615 0.00 0.00 0.00 2.87
6375 7384 8.622157 TCCGTATCTAGACAAATGTAAGAGAAG 58.378 37.037 0.00 3.16 0.00 2.85
6376 7385 8.622157 CCGTATCTAGACAAATGTAAGAGAAGA 58.378 37.037 0.00 0.00 0.00 2.87
6384 7393 8.579863 AGACAAATGTAAGAGAAGAATTTTGGG 58.420 33.333 0.00 0.00 0.00 4.12
6385 7394 8.477419 ACAAATGTAAGAGAAGAATTTTGGGA 57.523 30.769 0.00 0.00 0.00 4.37
6386 7395 8.360390 ACAAATGTAAGAGAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 0.00 4.46
6387 7396 6.743575 ATGTAAGAGAAGAATTTTGGGACG 57.256 37.500 0.00 0.00 0.00 4.79
6388 7397 5.001232 TGTAAGAGAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6389 7398 4.367039 AAGAGAAGAATTTTGGGACGGA 57.633 40.909 0.00 0.00 0.00 4.69
6390 7399 3.944087 AGAGAAGAATTTTGGGACGGAG 58.056 45.455 0.00 0.00 0.00 4.63
6391 7400 3.010420 GAGAAGAATTTTGGGACGGAGG 58.990 50.000 0.00 0.00 0.00 4.30
6392 7401 2.092323 GAAGAATTTTGGGACGGAGGG 58.908 52.381 0.00 0.00 0.00 4.30
6393 7402 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6394 7403 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6395 7404 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
6407 7416 4.028131 ACGGAGGGAGTATGTGAATACAA 58.972 43.478 0.00 0.00 40.84 2.41
6423 7432 9.793259 TGTGAATACAAAGAAAAGGAGTCTTAT 57.207 29.630 0.00 0.00 34.19 1.73
6430 7439 5.948742 AGAAAAGGAGTCTTATCTGGAGG 57.051 43.478 0.00 0.00 32.01 4.30
6433 7442 4.338795 AAGGAGTCTTATCTGGAGGTGA 57.661 45.455 0.00 0.00 0.00 4.02
6469 7478 3.540314 TCATGTGCCTTTTTGTTTGCT 57.460 38.095 0.00 0.00 0.00 3.91
6470 7479 4.662468 TCATGTGCCTTTTTGTTTGCTA 57.338 36.364 0.00 0.00 0.00 3.49
6471 7480 4.367450 TCATGTGCCTTTTTGTTTGCTAC 58.633 39.130 0.00 0.00 0.00 3.58
6472 7481 4.099266 TCATGTGCCTTTTTGTTTGCTACT 59.901 37.500 0.00 0.00 0.00 2.57
6473 7482 4.040445 TGTGCCTTTTTGTTTGCTACTC 57.960 40.909 0.00 0.00 0.00 2.59
6474 7483 3.181480 TGTGCCTTTTTGTTTGCTACTCC 60.181 43.478 0.00 0.00 0.00 3.85
6475 7484 2.364002 TGCCTTTTTGTTTGCTACTCCC 59.636 45.455 0.00 0.00 0.00 4.30
6476 7485 2.628178 GCCTTTTTGTTTGCTACTCCCT 59.372 45.455 0.00 0.00 0.00 4.20
6477 7486 3.305403 GCCTTTTTGTTTGCTACTCCCTC 60.305 47.826 0.00 0.00 0.00 4.30
6478 7487 3.255888 CCTTTTTGTTTGCTACTCCCTCC 59.744 47.826 0.00 0.00 0.00 4.30
6479 7488 2.178912 TTTGTTTGCTACTCCCTCCG 57.821 50.000 0.00 0.00 0.00 4.63
6480 7489 1.053424 TTGTTTGCTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
6481 7490 0.606604 TGTTTGCTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
6482 7491 0.108281 GTTTGCTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
6483 7492 1.262640 TTTGCTACTCCCTCCGTCCC 61.263 60.000 0.00 0.00 0.00 4.46
6484 7493 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
6485 7494 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
6486 7495 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
6487 7496 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
6488 7497 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
6489 7498 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
6490 7499 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6491 7500 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6492 7501 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6493 7502 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6494 7503 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6495 7504 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6496 7505 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6497 7506 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
6498 7507 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
6499 7508 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
6500 7509 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
6501 7510 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
6502 7511 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
6503 7512 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
6504 7513 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
6505 7514 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
6506 7515 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
6507 7516 8.070171 CCCATAATATAAGAGCGTTTTTGACAG 58.930 37.037 0.00 0.00 0.00 3.51
6508 7517 8.612619 CCATAATATAAGAGCGTTTTTGACAGT 58.387 33.333 0.00 0.00 0.00 3.55
6511 7520 8.542497 AATATAAGAGCGTTTTTGACAGTACA 57.458 30.769 0.00 0.00 0.00 2.90
6512 7521 4.531659 AAGAGCGTTTTTGACAGTACAC 57.468 40.909 0.00 0.00 0.00 2.90
6513 7522 3.793559 AGAGCGTTTTTGACAGTACACT 58.206 40.909 0.00 0.00 0.00 3.55
6514 7523 4.940463 AGAGCGTTTTTGACAGTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
6515 7524 5.539048 AGAGCGTTTTTGACAGTACACTAT 58.461 37.500 0.00 0.00 0.00 2.12
6516 7525 5.989777 AGAGCGTTTTTGACAGTACACTATT 59.010 36.000 0.00 0.00 0.00 1.73
6517 7526 6.482308 AGAGCGTTTTTGACAGTACACTATTT 59.518 34.615 0.00 0.00 0.00 1.40
6518 7527 7.012044 AGAGCGTTTTTGACAGTACACTATTTT 59.988 33.333 0.00 0.00 0.00 1.82
6519 7528 7.130269 AGCGTTTTTGACAGTACACTATTTTC 58.870 34.615 0.00 0.00 0.00 2.29
6520 7529 6.908284 GCGTTTTTGACAGTACACTATTTTCA 59.092 34.615 0.00 0.00 0.00 2.69
6521 7530 7.429920 GCGTTTTTGACAGTACACTATTTTCAA 59.570 33.333 0.00 0.00 0.00 2.69
6522 7531 9.279904 CGTTTTTGACAGTACACTATTTTCAAA 57.720 29.630 0.00 0.00 0.00 2.69
6527 7536 8.795786 TGACAGTACACTATTTTCAAAAATGC 57.204 30.769 10.27 0.00 38.90 3.56
6528 7537 8.629158 TGACAGTACACTATTTTCAAAAATGCT 58.371 29.630 10.27 0.00 38.90 3.79
6529 7538 9.118236 GACAGTACACTATTTTCAAAAATGCTC 57.882 33.333 10.27 0.00 38.90 4.26
6530 7539 8.850156 ACAGTACACTATTTTCAAAAATGCTCT 58.150 29.630 10.27 1.18 38.90 4.09
6531 7540 9.683069 CAGTACACTATTTTCAAAAATGCTCTT 57.317 29.630 10.27 0.00 38.90 2.85
6544 7553 8.783093 TCAAAAATGCTCTTATAATATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
6545 7554 7.687941 AAAATGCTCTTATAATATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
6546 7555 6.620877 AATGCTCTTATAATATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
6547 7556 5.661056 TGCTCTTATAATATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
6548 7557 4.466370 TGCTCTTATAATATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
6549 7558 4.141914 GCTCTTATAATATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
6550 7559 5.269991 CTCTTATAATATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
6551 7560 5.269991 TCTTATAATATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6586 7595 2.111384 GGAGTCTTGCTGGGATAGTGA 58.889 52.381 0.00 0.00 0.00 3.41
7141 8284 2.159198 CCCAGTTACATTGAATGCCAGC 60.159 50.000 4.84 0.00 0.00 4.85
7218 8361 4.339872 TTGTTTTCTGGCTGAAATGCAT 57.660 36.364 18.43 0.00 43.34 3.96
7221 8364 3.763097 TTTCTGGCTGAAATGCATACG 57.237 42.857 14.58 0.00 39.50 3.06
7330 8473 7.995463 TTCTTAATTCAAAGTTTCAAACCGG 57.005 32.000 0.00 0.00 0.00 5.28
7342 8485 5.359009 AGTTTCAAACCGGAGTATCTATCGA 59.641 40.000 9.46 0.00 33.73 3.59
7353 8496 5.921408 GGAGTATCTATCGATGTGTTGGAAC 59.079 44.000 8.54 0.00 33.73 3.62
7354 8497 6.239064 GGAGTATCTATCGATGTGTTGGAACT 60.239 42.308 8.54 0.86 33.73 3.01
7355 8498 7.113658 AGTATCTATCGATGTGTTGGAACTT 57.886 36.000 8.54 0.00 0.00 2.66
7356 8499 6.980978 AGTATCTATCGATGTGTTGGAACTTG 59.019 38.462 8.54 0.00 0.00 3.16
7357 8500 4.503910 TCTATCGATGTGTTGGAACTTGG 58.496 43.478 8.54 0.00 0.00 3.61
7358 8501 2.920724 TCGATGTGTTGGAACTTGGA 57.079 45.000 0.00 0.00 0.00 3.53
7359 8502 3.201353 TCGATGTGTTGGAACTTGGAA 57.799 42.857 0.00 0.00 0.00 3.53
7446 8589 7.330262 TGAGTGTTGATACATGAGCTTTGATA 58.670 34.615 0.00 0.00 36.50 2.15
7600 8748 1.398958 GCAGGGAGCTCCTCGATTCT 61.399 60.000 31.36 16.36 46.12 2.40
7601 8749 1.988293 CAGGGAGCTCCTCGATTCTA 58.012 55.000 31.36 0.00 46.12 2.10
7602 8750 2.311463 CAGGGAGCTCCTCGATTCTAA 58.689 52.381 31.36 0.00 46.12 2.10
7603 8751 2.695666 CAGGGAGCTCCTCGATTCTAAA 59.304 50.000 31.36 0.00 46.12 1.85
7604 8752 3.133003 CAGGGAGCTCCTCGATTCTAAAA 59.867 47.826 31.36 0.00 46.12 1.52
7605 8753 3.970640 AGGGAGCTCCTCGATTCTAAAAT 59.029 43.478 31.36 0.17 44.06 1.82
7606 8754 4.061596 GGGAGCTCCTCGATTCTAAAATG 58.938 47.826 31.36 0.00 35.95 2.32
7607 8755 4.202264 GGGAGCTCCTCGATTCTAAAATGA 60.202 45.833 31.36 0.00 35.95 2.57
7612 8760 8.286191 AGCTCCTCGATTCTAAAATGAAAAAT 57.714 30.769 0.00 0.00 0.00 1.82
7659 8815 2.935481 CCCTCTGTTGGAGCCCCA 60.935 66.667 0.00 0.00 40.57 4.96
7660 8816 2.673523 CCTCTGTTGGAGCCCCAG 59.326 66.667 0.00 0.00 44.60 4.45
7738 8894 7.288621 AGTTTCTCCTTCATCCATTTGTTTTCT 59.711 33.333 0.00 0.00 0.00 2.52
7755 8911 5.288232 TGTTTTCTTTGCTTCGTGACATTTG 59.712 36.000 0.00 0.00 0.00 2.32
7765 8921 4.061357 TCGTGACATTTGGTGTAACAGA 57.939 40.909 0.00 0.00 41.61 3.41
7795 8965 8.976353 TCCCATTTGTACACATTATTTTGCTAT 58.024 29.630 0.00 0.00 0.00 2.97
7824 8994 3.988379 TTTCCACTCTGTTTCATGTGC 57.012 42.857 0.00 0.00 0.00 4.57
7833 9003 5.238432 ACTCTGTTTCATGTGCGACATTTTA 59.762 36.000 0.00 0.00 36.53 1.52
7888 9058 8.558973 AGTCTGATAGATTTTCAGAGTTTTGG 57.441 34.615 3.74 0.00 46.73 3.28
7899 9069 6.945636 TTCAGAGTTTTGGTCCTCCTAATA 57.054 37.500 0.00 0.00 34.23 0.98
7993 9163 1.816537 CAGTGACCGGACGATCCAT 59.183 57.895 9.46 0.00 35.91 3.41
8129 9299 1.012086 TCAGCGAGAATGCATTGCTC 58.988 50.000 18.59 19.65 37.31 4.26
8200 9370 2.432146 CTGAGAGCATGCAGGGTAGTTA 59.568 50.000 21.98 0.00 0.00 2.24
8443 9616 5.238214 ACTTTGAAGTGAGAATGCAGAAGTC 59.762 40.000 0.00 0.00 37.98 3.01
8475 9648 6.991531 ACATTTGTTTACATCCAAAGTGCAAT 59.008 30.769 0.00 0.00 34.35 3.56
8497 9670 3.323691 TGGGATTCGTCAAGAGTTCAGAA 59.676 43.478 0.00 0.00 0.00 3.02
8515 9728 9.890915 AGTTCAGAATCTTCCCTATAATAGAGT 57.109 33.333 0.00 0.00 0.00 3.24
8678 9891 2.549064 AAAATTTGCTCCAAGTGGCC 57.451 45.000 0.00 0.00 34.44 5.36
8704 9917 4.097741 CCACTCATGACCACAAGAAAACAA 59.902 41.667 0.00 0.00 0.00 2.83
8709 9922 7.068103 ACTCATGACCACAAGAAAACAATTGTA 59.932 33.333 12.39 0.00 37.54 2.41
8710 9923 7.199766 TCATGACCACAAGAAAACAATTGTAC 58.800 34.615 12.39 6.86 37.54 2.90
8711 9924 5.897050 TGACCACAAGAAAACAATTGTACC 58.103 37.500 12.39 4.19 37.54 3.34
8712 9925 5.654650 TGACCACAAGAAAACAATTGTACCT 59.345 36.000 12.39 6.50 37.54 3.08
8713 9926 5.901552 ACCACAAGAAAACAATTGTACCTG 58.098 37.500 12.39 9.00 37.54 4.00
8715 9928 5.288804 CACAAGAAAACAATTGTACCTGGG 58.711 41.667 12.39 4.42 37.54 4.45
8717 9930 5.163457 ACAAGAAAACAATTGTACCTGGGTG 60.163 40.000 12.39 7.20 37.85 4.61
8719 9932 2.373335 AACAATTGTACCTGGGTGCA 57.627 45.000 12.39 6.46 38.87 4.57
8720 9933 1.616159 ACAATTGTACCTGGGTGCAC 58.384 50.000 9.97 8.80 40.23 4.57
8721 9934 1.133637 ACAATTGTACCTGGGTGCACA 60.134 47.619 20.43 0.00 40.23 4.57
8722 9935 1.959985 CAATTGTACCTGGGTGCACAA 59.040 47.619 20.43 9.75 40.23 3.33
8724 9937 2.373335 TTGTACCTGGGTGCACAATT 57.627 45.000 20.43 0.00 40.23 2.32
8725 9938 1.614996 TGTACCTGGGTGCACAATTG 58.385 50.000 20.43 3.24 35.90 2.32
8736 9949 0.681175 GCACAATTGCTCCAAGGGTT 59.319 50.000 5.05 0.00 46.17 4.11
8752 11127 1.896220 GGTTCAGCACCAGAATCACA 58.104 50.000 0.00 0.00 46.42 3.58
8756 11131 2.929641 TCAGCACCAGAATCACAACAA 58.070 42.857 0.00 0.00 0.00 2.83
8760 11135 5.051816 CAGCACCAGAATCACAACAAAATT 58.948 37.500 0.00 0.00 0.00 1.82
8765 11140 6.915300 CACCAGAATCACAACAAAATTAACGA 59.085 34.615 0.00 0.00 0.00 3.85
8786 11161 0.247736 GAGAGCGTCCAGAACACCAT 59.752 55.000 0.00 0.00 0.00 3.55
8811 11186 0.179045 CCATCTTCCAACCCTAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
8835 11210 2.158564 GCCATTTCCCATCTCATCTCCA 60.159 50.000 0.00 0.00 0.00 3.86
8836 11211 3.499926 GCCATTTCCCATCTCATCTCCAT 60.500 47.826 0.00 0.00 0.00 3.41
8837 11212 4.263639 GCCATTTCCCATCTCATCTCCATA 60.264 45.833 0.00 0.00 0.00 2.74
8838 11213 5.498393 CCATTTCCCATCTCATCTCCATAG 58.502 45.833 0.00 0.00 0.00 2.23
8839 11214 4.630644 TTTCCCATCTCATCTCCATAGC 57.369 45.455 0.00 0.00 0.00 2.97
8840 11215 2.544721 TCCCATCTCATCTCCATAGCC 58.455 52.381 0.00 0.00 0.00 3.93
8841 11216 2.158112 TCCCATCTCATCTCCATAGCCA 60.158 50.000 0.00 0.00 0.00 4.75
8842 11217 2.027377 CCCATCTCATCTCCATAGCCAC 60.027 54.545 0.00 0.00 0.00 5.01
8843 11218 2.027377 CCATCTCATCTCCATAGCCACC 60.027 54.545 0.00 0.00 0.00 4.61
8844 11219 2.477104 TCTCATCTCCATAGCCACCA 57.523 50.000 0.00 0.00 0.00 4.17
8845 11220 2.042464 TCTCATCTCCATAGCCACCAC 58.958 52.381 0.00 0.00 0.00 4.16
8846 11221 1.071385 CTCATCTCCATAGCCACCACC 59.929 57.143 0.00 0.00 0.00 4.61
8847 11222 0.839277 CATCTCCATAGCCACCACCA 59.161 55.000 0.00 0.00 0.00 4.17
8848 11223 1.422781 CATCTCCATAGCCACCACCAT 59.577 52.381 0.00 0.00 0.00 3.55
8849 11224 1.131638 TCTCCATAGCCACCACCATC 58.868 55.000 0.00 0.00 0.00 3.51
8850 11225 0.839277 CTCCATAGCCACCACCATCA 59.161 55.000 0.00 0.00 0.00 3.07
8851 11226 1.422781 CTCCATAGCCACCACCATCAT 59.577 52.381 0.00 0.00 0.00 2.45
8852 11227 1.852309 TCCATAGCCACCACCATCATT 59.148 47.619 0.00 0.00 0.00 2.57
8853 11228 1.958579 CCATAGCCACCACCATCATTG 59.041 52.381 0.00 0.00 0.00 2.82
8854 11229 1.338973 CATAGCCACCACCATCATTGC 59.661 52.381 0.00 0.00 0.00 3.56
8855 11230 0.330941 TAGCCACCACCATCATTGCA 59.669 50.000 0.00 0.00 0.00 4.08
8856 11231 0.968901 AGCCACCACCATCATTGCAG 60.969 55.000 0.00 0.00 0.00 4.41
8857 11232 1.514087 CCACCACCATCATTGCAGC 59.486 57.895 0.00 0.00 0.00 5.25
8858 11233 1.252215 CCACCACCATCATTGCAGCA 61.252 55.000 0.00 0.00 0.00 4.41
8859 11234 0.604073 CACCACCATCATTGCAGCAA 59.396 50.000 11.07 11.07 0.00 3.91
8860 11235 1.206132 CACCACCATCATTGCAGCAAT 59.794 47.619 15.33 15.33 34.04 3.56
8861 11236 1.479323 ACCACCATCATTGCAGCAATC 59.521 47.619 18.22 0.00 31.05 2.67
8862 11237 1.202486 CCACCATCATTGCAGCAATCC 60.202 52.381 18.22 0.00 31.05 3.01
8863 11238 1.117150 ACCATCATTGCAGCAATCCC 58.883 50.000 18.22 0.00 31.05 3.85
8864 11239 0.391597 CCATCATTGCAGCAATCCCC 59.608 55.000 18.22 0.00 31.05 4.81
8872 11247 1.693640 CAGCAATCCCCCTCCAAGT 59.306 57.895 0.00 0.00 0.00 3.16
8874 11249 0.786435 AGCAATCCCCCTCCAAGTTT 59.214 50.000 0.00 0.00 0.00 2.66
8890 11265 5.123186 TCCAAGTTTGCCATACTTGTAATCG 59.877 40.000 21.36 9.84 46.98 3.34
8893 11268 5.001232 AGTTTGCCATACTTGTAATCGTGT 58.999 37.500 0.00 0.00 0.00 4.49
8897 11272 5.908341 TGCCATACTTGTAATCGTGTATCA 58.092 37.500 0.00 0.00 0.00 2.15
8967 11342 6.485830 TTATGTCTTCTCCGATGATTTCCT 57.514 37.500 0.00 0.00 0.00 3.36
8976 11351 2.874701 CCGATGATTTCCTCTTGCGATT 59.125 45.455 0.00 0.00 0.00 3.34
8979 11354 4.604976 GATGATTTCCTCTTGCGATTTGG 58.395 43.478 0.00 0.00 0.00 3.28
8980 11355 3.420893 TGATTTCCTCTTGCGATTTGGT 58.579 40.909 0.00 0.00 0.00 3.67
8999 11374 7.915293 TTTGGTCGTCATATGTGAGTAATTT 57.085 32.000 1.90 0.00 34.36 1.82
9002 11377 6.876789 TGGTCGTCATATGTGAGTAATTTTGT 59.123 34.615 1.90 0.00 34.36 2.83
9033 11408 3.317150 GGTTGAGGCATAACTTTGCAAC 58.683 45.455 0.00 0.00 44.59 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.507140 ATTCCTTGCCGAGGGTGATA 58.493 50.000 0.00 0.00 46.31 2.15
12 13 1.507140 TATTCCTTGCCGAGGGTGAT 58.493 50.000 0.00 0.00 46.31 3.06
13 14 1.209504 CTTATTCCTTGCCGAGGGTGA 59.790 52.381 0.00 0.00 46.31 4.02
81 82 4.680237 CAACCTCCACGCGCCTCA 62.680 66.667 5.73 0.00 0.00 3.86
88 89 3.041940 GACACGCCAACCTCCACG 61.042 66.667 0.00 0.00 0.00 4.94
100 101 5.050490 CAGATAACTAGATTTGGGGACACG 58.950 45.833 0.00 0.00 42.67 4.49
110 111 3.240302 CCCCGACCCAGATAACTAGATT 58.760 50.000 0.00 0.00 0.00 2.40
127 128 0.033366 CCTGCCAAAGAAAAACCCCG 59.967 55.000 0.00 0.00 0.00 5.73
167 168 1.447838 CGTGTCATCCCCTTCACGG 60.448 63.158 8.36 0.00 46.12 4.94
183 185 4.684654 GGAGGACCAAGACACATAGTCGT 61.685 52.174 0.00 0.00 43.15 4.34
207 209 4.756642 CCTTCACATGTCAAAACTAGAGCA 59.243 41.667 0.00 0.00 0.00 4.26
218 220 0.184692 TGGCCAACCTTCACATGTCA 59.815 50.000 0.61 0.00 36.63 3.58
223 225 1.341482 TGAAGTTGGCCAACCTTCACA 60.341 47.619 34.92 27.76 42.06 3.58
238 240 2.030562 CCCCGACAACGCTGAAGT 59.969 61.111 0.00 0.00 38.29 3.01
246 248 1.412710 TCTCATATGCTCCCCGACAAC 59.587 52.381 0.00 0.00 0.00 3.32
248 250 2.015456 ATCTCATATGCTCCCCGACA 57.985 50.000 0.00 0.00 0.00 4.35
259 261 8.883731 CGAAGTAAAGGAACACAAATCTCATAT 58.116 33.333 0.00 0.00 0.00 1.78
300 302 6.980978 CACATGAGAGGGCTTATATAATACCG 59.019 42.308 0.00 0.00 0.00 4.02
309 311 5.184892 AGAAAACACATGAGAGGGCTTAT 57.815 39.130 0.00 0.00 0.00 1.73
312 314 3.073650 AGAAGAAAACACATGAGAGGGCT 59.926 43.478 0.00 0.00 0.00 5.19
313 315 3.416156 AGAAGAAAACACATGAGAGGGC 58.584 45.455 0.00 0.00 0.00 5.19
325 327 1.956477 TGCTGCCCAAGAGAAGAAAAC 59.044 47.619 0.00 0.00 0.00 2.43
330 332 0.035881 TGACTGCTGCCCAAGAGAAG 59.964 55.000 0.00 0.00 0.00 2.85
336 338 0.602638 CGTAACTGACTGCTGCCCAA 60.603 55.000 0.00 0.00 0.00 4.12
340 342 0.586319 TTTGCGTAACTGACTGCTGC 59.414 50.000 0.00 0.00 0.00 5.25
355 357 1.132640 GTCAGCGACCACGATTTGC 59.867 57.895 0.00 0.00 42.66 3.68
368 370 3.876274 TGTGGACTAGAAGATGTCAGC 57.124 47.619 0.00 0.00 35.11 4.26
369 371 5.114780 CCAATGTGGACTAGAAGATGTCAG 58.885 45.833 0.00 0.00 40.96 3.51
370 372 4.623886 GCCAATGTGGACTAGAAGATGTCA 60.624 45.833 0.00 0.00 40.96 3.58
372 374 3.679917 CGCCAATGTGGACTAGAAGATGT 60.680 47.826 0.00 0.00 40.96 3.06
373 375 2.868583 CGCCAATGTGGACTAGAAGATG 59.131 50.000 0.00 0.00 40.96 2.90
431 434 3.118555 TCTCGGTGGAGAAAACTTGTTGA 60.119 43.478 0.00 0.00 46.11 3.18
445 448 3.201290 CTCTTGATTTCCATCTCGGTGG 58.799 50.000 0.00 0.00 40.76 4.61
459 462 2.436646 CCGTTGCCGCCTCTTGAT 60.437 61.111 0.00 0.00 0.00 2.57
462 465 4.643387 AAGCCGTTGCCGCCTCTT 62.643 61.111 0.00 0.00 38.69 2.85
498 501 2.172082 TCTTCCTTCTCCTGCATCCATG 59.828 50.000 0.00 0.00 0.00 3.66
499 502 2.172293 GTCTTCCTTCTCCTGCATCCAT 59.828 50.000 0.00 0.00 0.00 3.41
525 528 4.286297 TCTTCATAGTTTGAGGGGTGTG 57.714 45.455 0.00 0.00 35.27 3.82
570 573 6.655078 AGTAGCACAAATCCTCACAAAAAT 57.345 33.333 0.00 0.00 0.00 1.82
630 633 6.811665 GCCTCATGTAATGGTTTAGTTTTTCC 59.188 38.462 0.00 0.00 46.73 3.13
631 634 6.811665 GGCCTCATGTAATGGTTTAGTTTTTC 59.188 38.462 0.00 0.00 46.73 2.29
650 653 1.983119 GACGGATGGGAATGGCCTCA 61.983 60.000 3.32 0.00 36.66 3.86
664 674 5.163972 CGTTTTGTCGTATTTATTGGACGGA 60.164 40.000 0.00 0.00 37.20 4.69
677 687 2.864946 TGCTGTAAAGCGTTTTGTCGTA 59.135 40.909 7.57 0.00 37.69 3.43
743 753 0.246086 GCTGTGTCTGTCTGGGAGAG 59.754 60.000 0.00 0.00 0.00 3.20
744 754 1.527433 CGCTGTGTCTGTCTGGGAGA 61.527 60.000 0.00 0.00 0.00 3.71
745 755 1.080230 CGCTGTGTCTGTCTGGGAG 60.080 63.158 0.00 0.00 0.00 4.30
746 756 2.574018 CCGCTGTGTCTGTCTGGGA 61.574 63.158 0.00 0.00 0.00 4.37
747 757 2.047844 CCGCTGTGTCTGTCTGGG 60.048 66.667 0.00 0.00 0.00 4.45
749 759 2.029518 TGCCGCTGTGTCTGTCTG 59.970 61.111 0.00 0.00 0.00 3.51
750 760 2.029666 GTGCCGCTGTGTCTGTCT 59.970 61.111 0.00 0.00 0.00 3.41
751 761 1.669115 ATGTGCCGCTGTGTCTGTC 60.669 57.895 0.00 0.00 0.00 3.51
752 762 1.962822 CATGTGCCGCTGTGTCTGT 60.963 57.895 0.00 0.00 0.00 3.41
754 764 1.375140 CTCATGTGCCGCTGTGTCT 60.375 57.895 0.00 0.00 0.00 3.41
914 937 2.336809 CCGCTCTGATACCCGAGC 59.663 66.667 0.00 0.00 46.91 5.03
1298 1326 0.545787 ACCCGGGAACACATAGACCA 60.546 55.000 32.02 0.00 0.00 4.02
1314 1342 0.966179 AAATCAACAGCCCGAAACCC 59.034 50.000 0.00 0.00 0.00 4.11
1369 1398 3.037549 AGATTCCTCTGAACCCTAGCAG 58.962 50.000 0.00 0.00 32.13 4.24
1372 1401 7.439655 CGAATTTAAGATTCCTCTGAACCCTAG 59.560 40.741 0.00 0.00 32.13 3.02
1406 1435 5.643339 ATTCAGAATACATTCGTCGAAGC 57.357 39.130 13.88 0.00 41.56 3.86
1452 1481 6.604735 AATACATCATTCTAACTTGACGCC 57.395 37.500 0.00 0.00 0.00 5.68
1481 1510 7.365741 AGAATTTGTCAGAATTTGCTACTGTG 58.634 34.615 0.00 0.00 33.93 3.66
1499 1528 2.290367 TGTCCACGCACAGAAGAATTTG 59.710 45.455 0.00 0.00 0.00 2.32
1685 1726 5.882557 CACCATTTGCATTCTACTTACTCCT 59.117 40.000 0.00 0.00 0.00 3.69
1689 1730 8.208718 TGTATCACCATTTGCATTCTACTTAC 57.791 34.615 0.00 0.00 0.00 2.34
1690 1731 8.046708 ACTGTATCACCATTTGCATTCTACTTA 58.953 33.333 0.00 0.00 0.00 2.24
1691 1732 6.886459 ACTGTATCACCATTTGCATTCTACTT 59.114 34.615 0.00 0.00 0.00 2.24
1753 2108 9.382275 ACTAAAAATTGCATGGGATATTGTTTC 57.618 29.630 0.00 0.00 0.00 2.78
1771 2126 7.787725 ACAGTCGAGAGTCAAAACTAAAAAT 57.212 32.000 0.00 0.00 35.28 1.82
1789 2624 9.630098 TTTACAAAGAGTAGGTATAAACAGTCG 57.370 33.333 0.00 0.00 33.43 4.18
1937 2773 1.484444 GGGGTGAAGAGTGCTCTGGT 61.484 60.000 2.11 0.00 40.36 4.00
2155 2991 3.887621 TCCCTGCAGTACACAGATAAC 57.112 47.619 13.81 0.00 37.32 1.89
2291 3127 6.110707 TGATACGGACTAAAAACCAATCTCC 58.889 40.000 0.00 0.00 0.00 3.71
2328 3164 6.141527 GCGTTTTCAAAATAAAAACAATGGCC 59.858 34.615 0.00 0.00 43.52 5.36
2432 3269 8.430801 AACTGCATAAAGATCATAAGTCAGAC 57.569 34.615 0.00 0.00 0.00 3.51
2443 3280 7.118971 AGTCACTCTGAAAACTGCATAAAGATC 59.881 37.037 0.00 0.00 0.00 2.75
2444 3281 6.939163 AGTCACTCTGAAAACTGCATAAAGAT 59.061 34.615 0.00 0.00 0.00 2.40
2492 3333 3.071602 GGGCACTCTAGGCATCAATAAGA 59.928 47.826 0.00 0.00 35.46 2.10
2704 3547 0.620556 TCCTCCTGACCATCCTTTGC 59.379 55.000 0.00 0.00 0.00 3.68
2799 3642 9.407380 ACATGCAGGTCATTAGAACATAAATAA 57.593 29.630 0.00 0.00 32.39 1.40
2800 3643 8.978874 ACATGCAGGTCATTAGAACATAAATA 57.021 30.769 0.00 0.00 32.39 1.40
2801 3644 7.886629 ACATGCAGGTCATTAGAACATAAAT 57.113 32.000 0.00 0.00 32.39 1.40
2810 3653 5.121811 AGAAGCTAACATGCAGGTCATTAG 58.878 41.667 3.65 4.30 31.79 1.73
2885 3729 7.923344 ACAGGATAAGAGACATCATTTCTTACG 59.077 37.037 0.00 0.00 36.54 3.18
2954 3798 1.198713 TCTCTCCTCCAATCCAGTGC 58.801 55.000 0.00 0.00 0.00 4.40
3083 3927 1.287442 TGATCCCCAGCATTAAAGGCA 59.713 47.619 5.43 0.00 0.00 4.75
3086 3930 2.298163 GGCATGATCCCCAGCATTAAAG 59.702 50.000 0.00 0.00 0.00 1.85
3194 4039 4.217118 AGCACTGTTTAGCCTTTGAATCAG 59.783 41.667 0.00 0.00 0.00 2.90
3213 4065 4.989168 ACACAGTAACTACTAGCAAAGCAC 59.011 41.667 0.00 0.00 34.13 4.40
3216 4068 8.366671 AGAAAACACAGTAACTACTAGCAAAG 57.633 34.615 0.00 0.00 34.13 2.77
3217 4069 8.202137 AGAGAAAACACAGTAACTACTAGCAAA 58.798 33.333 0.00 0.00 34.13 3.68
3258 4110 4.513318 TCAAACGATTGACTGCACACATTA 59.487 37.500 3.72 0.00 40.59 1.90
3374 4261 0.312102 GAACACAAAGCACCTGAGCC 59.688 55.000 0.00 0.00 34.23 4.70
3376 4263 3.781079 TTTGAACACAAAGCACCTGAG 57.219 42.857 0.00 0.00 0.00 3.35
3450 4338 7.462724 GCATAAATACAACCGAAAGAATTGCAC 60.463 37.037 0.00 0.00 32.36 4.57
3476 4364 4.631377 TCATTCAGGCAGAATAAGAACACG 59.369 41.667 4.71 0.00 45.06 4.49
3479 4367 7.281774 TGAGAATCATTCAGGCAGAATAAGAAC 59.718 37.037 4.71 0.38 45.06 3.01
3494 4382 9.688041 GCCTGATGCATATGCTGAGAATCATTC 62.688 44.444 27.13 16.07 42.50 2.67
3498 4386 3.127203 GCCTGATGCATATGCTGAGAATC 59.873 47.826 27.13 20.29 42.66 2.52
3500 4388 2.105993 AGCCTGATGCATATGCTGAGAA 59.894 45.455 27.13 8.19 44.83 2.87
3558 4446 2.106566 AGACTACTGGACTGCATCTGG 58.893 52.381 0.00 0.00 0.00 3.86
3559 4447 3.883830 AAGACTACTGGACTGCATCTG 57.116 47.619 0.00 0.00 0.00 2.90
3579 4473 5.245531 ACGCTTCCATGTGAAAAGATCTAA 58.754 37.500 0.00 0.00 31.06 2.10
3584 4512 4.385825 AGTAACGCTTCCATGTGAAAAGA 58.614 39.130 0.00 0.00 31.06 2.52
3629 4558 2.497107 GCACAATGCACAAACACTCT 57.503 45.000 0.00 0.00 44.26 3.24
3660 4589 4.522789 ACCACATTTGAACACCCATACTTC 59.477 41.667 0.00 0.00 0.00 3.01
3678 4607 2.092968 AGCACAGTTTGAGAGAACCACA 60.093 45.455 0.00 0.00 0.00 4.17
3699 4629 2.890311 CTGGCAAACAGTGGTGGATTTA 59.110 45.455 0.00 0.00 42.42 1.40
3703 4633 4.577152 CTGGCAAACAGTGGTGGA 57.423 55.556 0.00 0.00 42.42 4.02
3717 4647 8.044060 TGCTAGTTCAGAAAAATGAATACTGG 57.956 34.615 0.00 0.00 41.05 4.00
3718 4648 9.334693 GTTGCTAGTTCAGAAAAATGAATACTG 57.665 33.333 0.00 0.00 41.05 2.74
3719 4649 9.066892 TGTTGCTAGTTCAGAAAAATGAATACT 57.933 29.630 0.00 0.00 41.05 2.12
3725 4655 7.701924 TCAAGTTGTTGCTAGTTCAGAAAAATG 59.298 33.333 2.11 0.00 33.23 2.32
3732 4662 4.024556 CCAGTCAAGTTGTTGCTAGTTCAG 60.025 45.833 2.11 0.00 33.23 3.02
3764 4701 4.201792 GCAGCTTCAGATGTGAGTACAATG 60.202 45.833 0.00 0.00 40.84 2.82
3810 4747 4.457834 AGTAGAGATGTTCAAAGACGGG 57.542 45.455 0.00 0.00 0.00 5.28
3826 4763 5.950544 ACCCATGCACACTAAATAGTAGA 57.049 39.130 0.00 0.00 34.13 2.59
3831 4768 8.128322 ACAATTTAACCCATGCACACTAAATA 57.872 30.769 0.00 0.00 0.00 1.40
3832 4769 7.003402 ACAATTTAACCCATGCACACTAAAT 57.997 32.000 0.00 0.00 0.00 1.40
3833 4770 6.412362 ACAATTTAACCCATGCACACTAAA 57.588 33.333 0.00 0.00 0.00 1.85
3834 4771 6.040955 TCAACAATTTAACCCATGCACACTAA 59.959 34.615 0.00 0.00 0.00 2.24
3971 4920 9.151471 TCACAAACTTAAGCTAGACATGATAAC 57.849 33.333 0.00 0.00 0.00 1.89
3984 4933 6.425114 TGAGAAGATCAGTCACAAACTTAAGC 59.575 38.462 1.29 0.00 35.45 3.09
4001 4950 5.186942 GCATATCTGGCATGATGAGAAGAT 58.813 41.667 0.00 3.60 0.00 2.40
4355 5304 4.142609 TGGAAGACAGATGAGGCAATAC 57.857 45.455 0.00 0.00 0.00 1.89
4360 5309 3.272574 TGAATGGAAGACAGATGAGGC 57.727 47.619 0.00 0.00 0.00 4.70
4395 5344 7.517417 GCAACGGTTCTACAAATGATATCAGAG 60.517 40.741 11.78 5.99 0.00 3.35
4494 5449 5.812127 TGTTTCTATGATCTCAACATGTCGG 59.188 40.000 0.00 0.00 0.00 4.79
4570 5525 8.867097 AGTAAACCATAAGTTGAACTACAGAGA 58.133 33.333 0.00 0.00 39.19 3.10
4601 5556 7.199766 TCAGCTGTTTTAAAATCAACGATGTT 58.800 30.769 14.67 0.00 0.00 2.71
4602 5557 6.734137 TCAGCTGTTTTAAAATCAACGATGT 58.266 32.000 14.67 0.00 0.00 3.06
4751 5706 3.566742 GCAACTTCCCCGTTTTCTCTTTA 59.433 43.478 0.00 0.00 0.00 1.85
4762 5717 1.028905 TTGAACAAGCAACTTCCCCG 58.971 50.000 0.00 0.00 0.00 5.73
4779 5734 6.183360 CCTTCAGCAATAGACTCCAAAGATTG 60.183 42.308 0.00 0.00 0.00 2.67
4804 5759 3.444916 TGTGACTCAGTTTTCTCGTCAC 58.555 45.455 12.44 12.44 46.77 3.67
4824 5779 5.525378 CGGATAGAATGTTTTCCTCCTCTTG 59.475 44.000 0.00 0.00 34.36 3.02
4854 5809 0.735471 GATCCGCCCTTTTTCTCTGC 59.265 55.000 0.00 0.00 0.00 4.26
4870 5825 3.701040 AGGAGCTTCTTCAGAGTCAGATC 59.299 47.826 0.00 0.00 0.00 2.75
4915 5870 7.936496 TTTGCAAATGGATCTAACTCATACA 57.064 32.000 8.05 0.00 0.00 2.29
4979 5934 1.557371 TGTCCACCAACAACACAGAGA 59.443 47.619 0.00 0.00 0.00 3.10
5355 6311 9.717942 GTGAAGGAAGCATTAGATTACTGATAT 57.282 33.333 0.00 0.00 33.76 1.63
5356 6312 8.928448 AGTGAAGGAAGCATTAGATTACTGATA 58.072 33.333 0.00 0.00 33.76 2.15
5593 6550 7.852971 TCCGAGTTAAACCATATTTAACAGG 57.147 36.000 19.19 19.44 43.58 4.00
5697 6654 8.457261 GCACTCATTTCTTTCATCTTCTTGTAT 58.543 33.333 0.00 0.00 0.00 2.29
5724 6681 9.780413 GGAACAAAGCTCTTTATTCTATCTTTG 57.220 33.333 11.64 9.43 42.45 2.77
5850 6807 5.102953 TCAGTAAATCTCCAACATCAGGG 57.897 43.478 0.00 0.00 0.00 4.45
5909 6866 7.692460 TGCTAGTGACAGATCATGAAAATTT 57.308 32.000 0.00 0.00 37.14 1.82
5920 6877 5.181748 GGAGTCAAATTGCTAGTGACAGAT 58.818 41.667 14.22 0.00 43.34 2.90
5930 6887 2.093447 CCCTAGTCGGAGTCAAATTGCT 60.093 50.000 0.00 0.00 33.16 3.91
5966 6923 6.060028 TCTTTTGAAACTCGGAACATTCAG 57.940 37.500 0.00 0.00 33.71 3.02
6099 7108 9.982651 TTGTATTTACCTCATCTAGTTATCAGC 57.017 33.333 0.00 0.00 0.00 4.26
6271 7280 0.323451 AATTTTGGGACGGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
6272 7281 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6273 7282 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6274 7283 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6275 7284 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6276 7285 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6277 7286 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6278 7287 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6279 7288 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6280 7289 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
6281 7290 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
6282 7291 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
6283 7292 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
6284 7293 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
6289 7298 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
6290 7299 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
6291 7300 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
6292 7301 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
6293 7302 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
6294 7303 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
6295 7304 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
6296 7305 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
6297 7306 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
6298 7307 8.647796 AGATACATCCGTATTTGGACAAATCTA 58.352 33.333 13.07 0.00 41.85 1.98
6299 7308 7.509546 AGATACATCCGTATTTGGACAAATCT 58.490 34.615 13.07 0.00 41.85 2.40
6300 7309 7.730364 AGATACATCCGTATTTGGACAAATC 57.270 36.000 13.07 5.63 41.85 2.17
6301 7310 8.429641 ACTAGATACATCCGTATTTGGACAAAT 58.570 33.333 14.02 14.02 41.85 2.32
6302 7311 7.788026 ACTAGATACATCCGTATTTGGACAAA 58.212 34.615 0.00 0.00 41.85 2.83
6303 7312 7.356089 ACTAGATACATCCGTATTTGGACAA 57.644 36.000 0.00 0.00 41.85 3.18
6304 7313 6.971726 ACTAGATACATCCGTATTTGGACA 57.028 37.500 0.00 0.00 41.85 4.02
6305 7314 8.355169 TGTAACTAGATACATCCGTATTTGGAC 58.645 37.037 8.66 0.00 41.85 4.02
6306 7315 8.467963 TGTAACTAGATACATCCGTATTTGGA 57.532 34.615 8.66 0.00 43.58 3.53
6307 7316 9.706691 AATGTAACTAGATACATCCGTATTTGG 57.293 33.333 21.77 0.00 43.83 3.28
6313 7322 9.745880 CACTAAAATGTAACTAGATACATCCGT 57.254 33.333 21.77 14.49 43.83 4.69
6314 7323 9.745880 ACACTAAAATGTAACTAGATACATCCG 57.254 33.333 21.77 14.02 43.83 4.18
6345 7354 9.346005 TCTTACATTTGTCTAGATACGGATGTA 57.654 33.333 11.94 11.94 32.86 2.29
6346 7355 8.234136 TCTTACATTTGTCTAGATACGGATGT 57.766 34.615 13.29 13.29 34.19 3.06
6347 7356 8.568794 TCTCTTACATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.85 0.00 3.51
6348 7357 8.693120 TCTCTTACATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
6349 7358 8.515695 TTCTCTTACATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
6350 7359 8.622157 TCTTCTCTTACATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
6358 7367 8.579863 CCCAAAATTCTTCTCTTACATTTGTCT 58.420 33.333 0.00 0.00 0.00 3.41
6359 7368 8.576442 TCCCAAAATTCTTCTCTTACATTTGTC 58.424 33.333 0.00 0.00 0.00 3.18
6360 7369 8.360390 GTCCCAAAATTCTTCTCTTACATTTGT 58.640 33.333 0.00 0.00 0.00 2.83
6361 7370 7.538678 CGTCCCAAAATTCTTCTCTTACATTTG 59.461 37.037 0.00 0.00 0.00 2.32
6362 7371 7.309194 CCGTCCCAAAATTCTTCTCTTACATTT 60.309 37.037 0.00 0.00 0.00 2.32
6363 7372 6.151144 CCGTCCCAAAATTCTTCTCTTACATT 59.849 38.462 0.00 0.00 0.00 2.71
6364 7373 5.648092 CCGTCCCAAAATTCTTCTCTTACAT 59.352 40.000 0.00 0.00 0.00 2.29
6365 7374 5.001232 CCGTCCCAAAATTCTTCTCTTACA 58.999 41.667 0.00 0.00 0.00 2.41
6366 7375 5.243207 TCCGTCCCAAAATTCTTCTCTTAC 58.757 41.667 0.00 0.00 0.00 2.34
6367 7376 5.488341 CTCCGTCCCAAAATTCTTCTCTTA 58.512 41.667 0.00 0.00 0.00 2.10
6368 7377 4.327680 CTCCGTCCCAAAATTCTTCTCTT 58.672 43.478 0.00 0.00 0.00 2.85
6369 7378 3.307762 CCTCCGTCCCAAAATTCTTCTCT 60.308 47.826 0.00 0.00 0.00 3.10
6370 7379 3.010420 CCTCCGTCCCAAAATTCTTCTC 58.990 50.000 0.00 0.00 0.00 2.87
6371 7380 2.290960 CCCTCCGTCCCAAAATTCTTCT 60.291 50.000 0.00 0.00 0.00 2.85
6372 7381 2.092323 CCCTCCGTCCCAAAATTCTTC 58.908 52.381 0.00 0.00 0.00 2.87
6373 7382 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6374 7383 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6375 7384 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6376 7385 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6377 7386 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6378 7387 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
6379 7388 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
6380 7389 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
6381 7390 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
6382 7391 0.396695 TCACATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
6383 7392 1.481871 TTCACATACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
6384 7393 3.635373 TGTATTCACATACTCCCTCCGTC 59.365 47.826 0.00 0.00 36.87 4.79
6385 7394 3.638860 TGTATTCACATACTCCCTCCGT 58.361 45.455 0.00 0.00 36.87 4.69
6386 7395 4.665833 TTGTATTCACATACTCCCTCCG 57.334 45.455 0.00 0.00 36.87 4.63
6387 7396 6.235231 TCTTTGTATTCACATACTCCCTCC 57.765 41.667 0.00 0.00 36.87 4.30
6388 7397 8.561738 TTTTCTTTGTATTCACATACTCCCTC 57.438 34.615 0.00 0.00 36.87 4.30
6389 7398 7.611855 CCTTTTCTTTGTATTCACATACTCCCT 59.388 37.037 0.00 0.00 36.87 4.20
6390 7399 7.610305 TCCTTTTCTTTGTATTCACATACTCCC 59.390 37.037 0.00 0.00 36.87 4.30
6391 7400 8.561738 TCCTTTTCTTTGTATTCACATACTCC 57.438 34.615 0.00 0.00 36.87 3.85
6392 7401 9.220767 ACTCCTTTTCTTTGTATTCACATACTC 57.779 33.333 0.00 0.00 36.87 2.59
6393 7402 9.220767 GACTCCTTTTCTTTGTATTCACATACT 57.779 33.333 0.00 0.00 36.87 2.12
6394 7403 9.220767 AGACTCCTTTTCTTTGTATTCACATAC 57.779 33.333 0.00 0.00 36.52 2.39
6395 7404 9.793259 AAGACTCCTTTTCTTTGTATTCACATA 57.207 29.630 0.00 0.00 33.76 2.29
6407 7416 5.788014 ACCTCCAGATAAGACTCCTTTTCTT 59.212 40.000 0.00 0.00 38.21 2.52
6423 7432 1.203174 TCCACATCAGTCACCTCCAGA 60.203 52.381 0.00 0.00 0.00 3.86
6430 7439 6.364165 CACATGAAAATTTCCACATCAGTCAC 59.636 38.462 0.00 0.00 0.00 3.67
6433 7442 5.232463 GCACATGAAAATTTCCACATCAGT 58.768 37.500 0.00 0.00 0.00 3.41
6469 7478 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
6470 7479 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
6471 7480 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6472 7481 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
6473 7482 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
6474 7483 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
6475 7484 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
6476 7485 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
6477 7486 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
6478 7487 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
6479 7488 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
6480 7489 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
6481 7490 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
6482 7491 8.612619 ACTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
6485 7494 9.642327 TGTACTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 0.00 0.98
6486 7495 8.440833 GTGTACTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 0.00 1.28
6487 7496 7.817962 AGTGTACTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 0.00 0.86
6488 7497 7.149973 AGTGTACTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 0.00 0.98
6489 7498 5.989777 AGTGTACTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 0.00 1.73
6490 7499 5.353938 AGTGTACTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 0.00 2.10
6491 7500 4.189231 AGTGTACTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 0.00 2.85
6492 7501 3.793559 AGTGTACTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 0.00 4.09
6493 7502 5.840940 ATAGTGTACTGTCAAAAACGCTC 57.159 39.130 0.00 0.00 34.68 5.03
6494 7503 6.613755 AAATAGTGTACTGTCAAAAACGCT 57.386 33.333 0.00 0.16 36.68 5.07
6495 7504 6.908284 TGAAAATAGTGTACTGTCAAAAACGC 59.092 34.615 0.00 0.00 0.00 4.84
6496 7505 8.829514 TTGAAAATAGTGTACTGTCAAAAACG 57.170 30.769 0.00 0.00 0.00 3.60
6501 7510 9.243637 GCATTTTTGAAAATAGTGTACTGTCAA 57.756 29.630 1.69 0.00 36.52 3.18
6502 7511 8.629158 AGCATTTTTGAAAATAGTGTACTGTCA 58.371 29.630 1.69 0.00 36.52 3.58
6503 7512 9.118236 GAGCATTTTTGAAAATAGTGTACTGTC 57.882 33.333 1.69 0.00 36.52 3.51
6504 7513 8.850156 AGAGCATTTTTGAAAATAGTGTACTGT 58.150 29.630 1.69 0.00 36.52 3.55
6505 7514 9.683069 AAGAGCATTTTTGAAAATAGTGTACTG 57.317 29.630 1.69 0.00 36.52 2.74
6518 7527 8.783093 CGTCCCATATTATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
6519 7528 8.023128 CCGTCCCATATTATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
6520 7529 7.942341 TCCGTCCCATATTATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
6521 7530 7.458397 TCCGTCCCATATTATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
6522 7531 7.016153 TCCGTCCCATATTATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
6523 7532 6.352222 CCTCCGTCCCATATTATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
6524 7533 5.129485 CCTCCGTCCCATATTATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
6525 7534 4.466370 CCTCCGTCCCATATTATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
6526 7535 4.141914 CCCTCCGTCCCATATTATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6527 7536 5.269991 TCCCTCCGTCCCATATTATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6528 7537 5.222484 ACTCCCTCCGTCCCATATTATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6529 7538 5.024118 ACTCCCTCCGTCCCATATTATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6530 7539 5.019657 ACTCCCTCCGTCCCATATTATAA 57.980 43.478 0.00 0.00 0.00 0.98
6531 7540 4.687262 ACTCCCTCCGTCCCATATTATA 57.313 45.455 0.00 0.00 0.00 0.98
6532 7541 3.562108 ACTCCCTCCGTCCCATATTAT 57.438 47.619 0.00 0.00 0.00 1.28
6533 7542 4.687262 ATACTCCCTCCGTCCCATATTA 57.313 45.455 0.00 0.00 0.00 0.98
6534 7543 3.562108 ATACTCCCTCCGTCCCATATT 57.438 47.619 0.00 0.00 0.00 1.28
6535 7544 4.687262 TTATACTCCCTCCGTCCCATAT 57.313 45.455 0.00 0.00 0.00 1.78
6536 7545 4.687262 ATTATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
6537 7546 3.562108 ATTATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
6538 7547 4.687262 ATATTATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
6539 7548 6.718912 GGTATATATTATACTCCCTCCGTCCC 59.281 46.154 0.00 0.00 0.00 4.46
6540 7549 7.447853 CAGGTATATATTATACTCCCTCCGTCC 59.552 44.444 0.00 0.00 0.00 4.79
6541 7550 7.447853 CCAGGTATATATTATACTCCCTCCGTC 59.552 44.444 0.00 0.00 0.00 4.79
6542 7551 7.129972 TCCAGGTATATATTATACTCCCTCCGT 59.870 40.741 0.00 0.00 0.00 4.69
6543 7552 7.524290 TCCAGGTATATATTATACTCCCTCCG 58.476 42.308 0.00 0.00 0.00 4.63
6544 7553 8.512813 ACTCCAGGTATATATTATACTCCCTCC 58.487 40.741 0.00 0.00 0.00 4.30
6545 7554 9.577222 GACTCCAGGTATATATTATACTCCCTC 57.423 40.741 0.00 0.00 0.00 4.30
6546 7555 9.311425 AGACTCCAGGTATATATTATACTCCCT 57.689 37.037 0.00 0.00 0.00 4.20
6547 7556 9.939424 AAGACTCCAGGTATATATTATACTCCC 57.061 37.037 0.00 0.00 0.00 4.30
6550 7559 9.998752 AGCAAGACTCCAGGTATATATTATACT 57.001 33.333 0.00 0.00 0.00 2.12
6586 7595 1.672356 GCGTGGCACTTCTGGATGT 60.672 57.895 16.72 0.00 0.00 3.06
6896 8039 2.105477 GGACAGCACACATATGGGAGAT 59.895 50.000 13.12 0.00 0.00 2.75
7141 8284 5.698832 TCGGTATGCTTCATCAACTTTTTG 58.301 37.500 0.00 0.00 0.00 2.44
7218 8361 5.935206 TCAGAAAGTTTGCATAATCACCGTA 59.065 36.000 0.00 0.00 0.00 4.02
7221 8364 8.408601 ACATATCAGAAAGTTTGCATAATCACC 58.591 33.333 0.00 0.00 0.00 4.02
7274 8417 8.195436 CCTTCCTACGAATCAGTAAAGTCATTA 58.805 37.037 0.00 0.00 0.00 1.90
7277 8420 5.713389 TCCTTCCTACGAATCAGTAAAGTCA 59.287 40.000 0.00 0.00 0.00 3.41
7283 8426 9.144298 AGAAATATTCCTTCCTACGAATCAGTA 57.856 33.333 0.00 0.00 31.33 2.74
7312 8455 6.715264 AGATACTCCGGTTTGAAACTTTGAAT 59.285 34.615 8.09 0.00 0.00 2.57
7342 8485 4.728772 TGATCTTCCAAGTTCCAACACAT 58.271 39.130 0.00 0.00 0.00 3.21
7353 8496 8.728337 TCTCTGATTGTTTATGATCTTCCAAG 57.272 34.615 0.00 0.00 0.00 3.61
7354 8497 9.690913 ATTCTCTGATTGTTTATGATCTTCCAA 57.309 29.630 0.00 0.00 0.00 3.53
7402 8545 3.930336 TCAACAGCCAACAGATGAGTAG 58.070 45.455 0.00 0.00 0.00 2.57
7446 8589 4.062490 TCCTGAAGGTCTAGCTAGGTTT 57.938 45.455 20.58 12.04 36.34 3.27
7543 8691 6.084326 TCAGAAAACAGATTACAAAAGGGC 57.916 37.500 0.00 0.00 0.00 5.19
7544 8692 8.981647 CATTTCAGAAAACAGATTACAAAAGGG 58.018 33.333 0.00 0.00 0.00 3.95
7607 8755 8.981659 CCCTCAGTTATCCCTGATTTTATTTTT 58.018 33.333 0.00 0.00 40.53 1.94
7612 8760 5.970640 AGACCCTCAGTTATCCCTGATTTTA 59.029 40.000 0.00 0.00 40.53 1.52
7620 8768 1.880941 ACCAGACCCTCAGTTATCCC 58.119 55.000 0.00 0.00 0.00 3.85
7659 8815 6.431234 ACAAAAATAAGACCGCAGAATTCTCT 59.569 34.615 4.57 0.00 0.00 3.10
7660 8816 6.612306 ACAAAAATAAGACCGCAGAATTCTC 58.388 36.000 4.57 0.02 0.00 2.87
7738 8894 2.425312 ACACCAAATGTCACGAAGCAAA 59.575 40.909 0.00 0.00 36.54 3.68
7755 8911 2.717639 ATGGGATGCTCTGTTACACC 57.282 50.000 0.00 0.00 0.00 4.16
7765 8921 7.422465 AAATAATGTGTACAAATGGGATGCT 57.578 32.000 0.00 0.00 0.00 3.79
7824 8994 7.926340 ACGATGTAACGAATTTAAAATGTCG 57.074 32.000 14.27 14.27 39.37 4.35
7833 9003 9.624697 TGTAGTTAGTAACGATGTAACGAATTT 57.375 29.630 7.38 0.00 36.23 1.82
7888 9058 9.939802 AAACGGATATTATGTTATTAGGAGGAC 57.060 33.333 0.00 0.00 0.00 3.85
7899 9069 6.588204 TGCAGGTAGAAACGGATATTATGTT 58.412 36.000 0.00 0.00 0.00 2.71
7993 9163 2.102420 CCATATGTCCTTGGCGTACTCA 59.898 50.000 1.24 0.00 0.00 3.41
8097 9267 2.595124 TCGCTGAATCGAGGCAAATA 57.405 45.000 0.00 0.00 34.09 1.40
8218 9388 3.007635 GGTAATACTGGCCAACTGACAC 58.992 50.000 7.01 0.37 0.00 3.67
8418 9590 5.591877 ACTTCTGCATTCTCACTTCAAAGTT 59.408 36.000 0.00 0.00 37.08 2.66
8443 9616 7.456684 TTGGATGTAAACAAATGTTTTCGTG 57.543 32.000 15.92 0.00 45.07 4.35
8475 9648 2.897326 TCTGAACTCTTGACGAATCCCA 59.103 45.455 0.00 0.00 0.00 4.37
8497 9670 9.914834 CTGCTACTACTCTATTATAGGGAAGAT 57.085 37.037 6.07 0.00 0.00 2.40
8515 9728 1.076513 TGTGAGGGACCACTGCTACTA 59.923 52.381 0.00 0.00 37.89 1.82
8678 9891 2.849942 TCTTGTGGTCATGAGTGGTTG 58.150 47.619 0.00 0.00 0.00 3.77
8688 9901 5.654650 AGGTACAATTGTTTTCTTGTGGTCA 59.345 36.000 17.78 0.00 36.34 4.02
8704 9917 2.603075 ATTGTGCACCCAGGTACAAT 57.397 45.000 15.69 10.79 45.00 2.71
8719 9932 2.242043 CTGAACCCTTGGAGCAATTGT 58.758 47.619 7.40 0.00 0.00 2.71
8720 9933 1.067354 GCTGAACCCTTGGAGCAATTG 60.067 52.381 0.00 0.00 0.00 2.32
8721 9934 1.260544 GCTGAACCCTTGGAGCAATT 58.739 50.000 0.00 0.00 0.00 2.32
8722 9935 0.112995 TGCTGAACCCTTGGAGCAAT 59.887 50.000 0.00 0.00 38.48 3.56
8724 9937 1.228245 GTGCTGAACCCTTGGAGCA 60.228 57.895 0.00 0.00 39.11 4.26
8725 9938 1.973812 GGTGCTGAACCCTTGGAGC 60.974 63.158 0.00 0.00 44.02 4.70
8734 9947 2.618241 TGTTGTGATTCTGGTGCTGAAC 59.382 45.455 0.00 0.00 0.00 3.18
8736 9949 2.636647 TGTTGTGATTCTGGTGCTGA 57.363 45.000 0.00 0.00 0.00 4.26
8752 11127 4.062991 ACGCTCTCCTCGTTAATTTTGTT 58.937 39.130 0.00 0.00 36.72 2.83
8756 11131 2.232941 TGGACGCTCTCCTCGTTAATTT 59.767 45.455 0.00 0.00 40.59 1.82
8760 11135 0.035725 TCTGGACGCTCTCCTCGTTA 60.036 55.000 0.00 0.00 40.59 3.18
8765 11140 1.536943 GGTGTTCTGGACGCTCTCCT 61.537 60.000 0.00 0.00 40.26 3.69
8811 11186 0.825010 ATGAGATGGGAAATGGCGGC 60.825 55.000 0.00 0.00 0.00 6.53
8835 11210 1.063792 TGCAATGATGGTGGTGGCTAT 60.064 47.619 0.00 0.00 0.00 2.97
8836 11211 0.330941 TGCAATGATGGTGGTGGCTA 59.669 50.000 0.00 0.00 0.00 3.93
8837 11212 0.968901 CTGCAATGATGGTGGTGGCT 60.969 55.000 0.00 0.00 0.00 4.75
8838 11213 1.514087 CTGCAATGATGGTGGTGGC 59.486 57.895 0.00 0.00 0.00 5.01
8839 11214 1.252215 TGCTGCAATGATGGTGGTGG 61.252 55.000 0.00 0.00 0.00 4.61
8840 11215 0.604073 TTGCTGCAATGATGGTGGTG 59.396 50.000 11.69 0.00 0.00 4.17
8841 11216 1.479323 GATTGCTGCAATGATGGTGGT 59.521 47.619 30.62 5.80 33.90 4.16
8842 11217 1.202486 GGATTGCTGCAATGATGGTGG 60.202 52.381 30.62 0.00 33.90 4.61
8843 11218 1.202486 GGGATTGCTGCAATGATGGTG 60.202 52.381 30.62 0.00 33.90 4.17
8844 11219 1.117150 GGGATTGCTGCAATGATGGT 58.883 50.000 30.62 8.15 33.90 3.55
8845 11220 0.391597 GGGGATTGCTGCAATGATGG 59.608 55.000 30.62 0.00 33.90 3.51
8846 11221 0.391597 GGGGGATTGCTGCAATGATG 59.608 55.000 30.62 0.00 33.90 3.07
8847 11222 0.263765 AGGGGGATTGCTGCAATGAT 59.736 50.000 30.62 9.75 33.90 2.45
8848 11223 0.396139 GAGGGGGATTGCTGCAATGA 60.396 55.000 30.62 3.45 33.90 2.57
8849 11224 1.397390 GGAGGGGGATTGCTGCAATG 61.397 60.000 30.62 0.00 33.90 2.82
8850 11225 1.075748 GGAGGGGGATTGCTGCAAT 60.076 57.895 26.54 26.54 36.72 3.56
8851 11226 2.091640 TTGGAGGGGGATTGCTGCAA 62.092 55.000 18.43 18.43 0.00 4.08
8852 11227 2.503846 CTTGGAGGGGGATTGCTGCA 62.504 60.000 0.00 0.00 0.00 4.41
8853 11228 1.755783 CTTGGAGGGGGATTGCTGC 60.756 63.158 0.00 0.00 0.00 5.25
8854 11229 0.040204 AACTTGGAGGGGGATTGCTG 59.960 55.000 0.00 0.00 0.00 4.41
8855 11230 0.786435 AAACTTGGAGGGGGATTGCT 59.214 50.000 0.00 0.00 0.00 3.91
8856 11231 0.897621 CAAACTTGGAGGGGGATTGC 59.102 55.000 0.00 0.00 0.00 3.56
8857 11232 0.897621 GCAAACTTGGAGGGGGATTG 59.102 55.000 0.00 0.00 0.00 2.67
8858 11233 0.252239 GGCAAACTTGGAGGGGGATT 60.252 55.000 0.00 0.00 0.00 3.01
8859 11234 1.388133 GGCAAACTTGGAGGGGGAT 59.612 57.895 0.00 0.00 0.00 3.85
8860 11235 1.442886 ATGGCAAACTTGGAGGGGGA 61.443 55.000 0.00 0.00 0.00 4.81
8861 11236 0.334676 TATGGCAAACTTGGAGGGGG 59.665 55.000 0.00 0.00 0.00 5.40
8862 11237 1.005924 AGTATGGCAAACTTGGAGGGG 59.994 52.381 0.00 0.00 0.00 4.79
8863 11238 2.493278 CAAGTATGGCAAACTTGGAGGG 59.507 50.000 14.11 0.00 46.52 4.30
8864 11239 3.855689 CAAGTATGGCAAACTTGGAGG 57.144 47.619 14.11 0.00 46.52 4.30
8872 11247 6.819146 TGATACACGATTACAAGTATGGCAAA 59.181 34.615 0.00 0.00 0.00 3.68
8874 11249 5.751509 GTGATACACGATTACAAGTATGGCA 59.248 40.000 0.00 0.00 0.00 4.92
8890 11265 1.014352 GGTTGCCGGATGTGATACAC 58.986 55.000 5.05 0.00 34.56 2.90
8893 11268 2.296792 CAATGGTTGCCGGATGTGATA 58.703 47.619 5.05 0.00 0.00 2.15
8897 11272 2.208132 TTACAATGGTTGCCGGATGT 57.792 45.000 5.05 0.06 0.00 3.06
8976 11351 7.389330 ACAAAATTACTCACATATGACGACCAA 59.611 33.333 10.38 1.27 0.00 3.67
8979 11354 9.901724 CTTACAAAATTACTCACATATGACGAC 57.098 33.333 10.38 0.00 0.00 4.34
8980 11355 9.093970 CCTTACAAAATTACTCACATATGACGA 57.906 33.333 10.38 4.63 0.00 4.20
8999 11374 2.524306 CCTCAACCCATTGCCTTACAA 58.476 47.619 0.00 0.00 44.01 2.41
9002 11377 0.407528 TGCCTCAACCCATTGCCTTA 59.592 50.000 0.00 0.00 35.63 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.