Multiple sequence alignment - TraesCS5B01G399900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G399900 chr5B 100.000 4217 0 0 1 4217 577242656 577238440 0.000000e+00 7788.0
1 TraesCS5B01G399900 chr5B 96.099 564 14 4 3655 4217 342182056 342182612 0.000000e+00 913.0
2 TraesCS5B01G399900 chr5B 95.823 407 16 1 3812 4217 118953507 118953101 0.000000e+00 656.0
3 TraesCS5B01G399900 chr5B 95.556 405 16 2 3249 3653 342181697 342182099 0.000000e+00 647.0
4 TraesCS5B01G399900 chr5B 93.939 330 13 2 375 697 577244507 577244178 3.790000e-135 492.0
5 TraesCS5B01G399900 chr5B 94.884 215 11 0 3439 3653 118953804 118953590 1.880000e-88 337.0
6 TraesCS5B01G399900 chr5B 97.396 192 5 0 3261 3452 118956168 118955977 1.130000e-85 327.0
7 TraesCS5B01G399900 chr5B 95.545 202 5 1 171 372 577244737 577244540 1.890000e-83 320.0
8 TraesCS5B01G399900 chr5B 93.642 173 7 3 1 172 577245020 577244851 5.410000e-64 255.0
9 TraesCS5B01G399900 chr5B 94.488 127 7 0 3655 3781 118953633 118953507 3.330000e-46 196.0
10 TraesCS5B01G399900 chr5B 93.443 122 8 0 2111 2232 451432987 451432866 9.310000e-42 182.0
11 TraesCS5B01G399900 chr5B 97.727 44 1 0 3655 3698 577239047 577239004 4.520000e-10 76.8
12 TraesCS5B01G399900 chr5D 90.128 1408 76 26 478 1851 469512400 469511022 0.000000e+00 1772.0
13 TraesCS5B01G399900 chr5D 95.440 614 26 1 2649 3260 469510201 469509588 0.000000e+00 977.0
14 TraesCS5B01G399900 chr5D 90.144 416 19 7 2224 2635 469510798 469510401 4.830000e-144 521.0
15 TraesCS5B01G399900 chr5D 96.800 250 5 1 1863 2112 469511041 469510795 8.440000e-112 414.0
16 TraesCS5B01G399900 chr5D 85.753 372 30 14 9 360 469513145 469512777 5.150000e-99 372.0
17 TraesCS5B01G399900 chr5D 77.578 223 37 10 37 248 509437001 509436781 5.730000e-24 122.0
18 TraesCS5B01G399900 chr5D 79.012 162 25 6 91 243 361646135 361645974 7.460000e-18 102.0
19 TraesCS5B01G399900 chr2B 98.646 960 12 1 3259 4217 359315412 359316371 0.000000e+00 1700.0
20 TraesCS5B01G399900 chr2B 98.225 958 16 1 3261 4217 373109196 373108239 0.000000e+00 1674.0
21 TraesCS5B01G399900 chr2B 92.126 127 8 2 2110 2234 135918435 135918309 1.200000e-40 178.0
22 TraesCS5B01G399900 chr2B 91.473 129 10 1 2099 2226 578044881 578045009 4.330000e-40 176.0
23 TraesCS5B01G399900 chr2B 90.625 128 12 0 2108 2235 557987946 557988073 2.020000e-38 171.0
24 TraesCS5B01G399900 chr2B 89.051 137 13 2 2771 2906 386594520 386594655 7.250000e-38 169.0
25 TraesCS5B01G399900 chr2B 87.302 126 14 2 1932 2056 386593119 386593243 4.400000e-30 143.0
26 TraesCS5B01G399900 chr2B 100.000 47 0 0 3609 3655 373108803 373108757 2.090000e-13 87.9
27 TraesCS5B01G399900 chr2B 100.000 45 0 0 3609 3653 359315807 359315851 2.700000e-12 84.2
28 TraesCS5B01G399900 chr2B 97.727 44 1 0 3655 3698 359315763 359315806 4.520000e-10 76.8
29 TraesCS5B01G399900 chr5A 88.738 1403 84 32 478 1851 590580330 590578973 0.000000e+00 1648.0
30 TraesCS5B01G399900 chr5A 90.808 990 44 21 2250 3238 590578714 590577771 0.000000e+00 1280.0
31 TraesCS5B01G399900 chr5A 96.000 250 7 1 1863 2112 590578992 590578746 1.830000e-108 403.0
32 TraesCS5B01G399900 chr4B 96.809 564 17 1 3655 4217 535340962 535341525 0.000000e+00 941.0
33 TraesCS5B01G399900 chr4B 92.875 393 12 1 3261 3653 535340629 535341005 1.320000e-154 556.0
34 TraesCS5B01G399900 chr4B 94.531 128 7 0 2108 2235 165306628 165306501 9.250000e-47 198.0
35 TraesCS5B01G399900 chr6D 95.398 565 24 2 3655 4217 17967983 17968547 0.000000e+00 898.0
36 TraesCS5B01G399900 chr6D 95.718 397 16 1 3256 3652 17967630 17968025 4.600000e-179 638.0
37 TraesCS5B01G399900 chr6D 79.602 201 28 11 53 243 465642278 465642475 9.510000e-27 132.0
38 TraesCS5B01G399900 chr7D 93.097 565 22 7 3655 4217 10632946 10632397 0.000000e+00 811.0
39 TraesCS5B01G399900 chr7D 96.709 395 12 1 3260 3653 10633297 10632903 0.000000e+00 656.0
40 TraesCS5B01G399900 chr7D 78.622 421 65 15 3659 4071 457111957 457112360 5.410000e-64 255.0
41 TraesCS5B01G399900 chr7B 94.529 329 18 0 3260 3588 700631196 700631524 3.760000e-140 508.0
42 TraesCS5B01G399900 chr7B 94.068 118 7 0 2109 2226 672158405 672158522 3.350000e-41 180.0
43 TraesCS5B01G399900 chr7B 90.164 61 6 0 177 237 213248011 213248071 3.500000e-11 80.5
44 TraesCS5B01G399900 chr3B 92.481 133 7 3 2101 2232 61536204 61536334 2.000000e-43 187.0
45 TraesCS5B01G399900 chr3B 93.496 123 7 1 2105 2226 796312647 796312769 9.310000e-42 182.0
46 TraesCS5B01G399900 chr6B 94.872 117 6 0 2110 2226 36133756 36133872 2.590000e-42 183.0
47 TraesCS5B01G399900 chr6B 90.152 132 12 1 2096 2226 658561142 658561011 2.020000e-38 171.0
48 TraesCS5B01G399900 chr6B 97.222 36 0 1 3718 3753 86439805 86439771 4.550000e-05 60.2
49 TraesCS5B01G399900 chr6A 94.872 117 6 0 2110 2226 14481057 14480941 2.590000e-42 183.0
50 TraesCS5B01G399900 chr1B 94.118 119 7 0 2109 2227 564897360 564897242 9.310000e-42 182.0
51 TraesCS5B01G399900 chr4A 93.388 121 8 0 2106 2226 687422427 687422547 3.350000e-41 180.0
52 TraesCS5B01G399900 chr4A 89.209 139 14 1 2110 2248 714067234 714067097 5.610000e-39 172.0
53 TraesCS5B01G399900 chr2A 88.321 137 14 2 2771 2906 413073135 413073000 3.370000e-36 163.0
54 TraesCS5B01G399900 chr2A 76.680 253 45 12 10 253 642218988 642219235 1.230000e-25 128.0
55 TraesCS5B01G399900 chr2D 78.906 256 38 8 12 258 89373572 89373324 4.360000e-35 159.0
56 TraesCS5B01G399900 chr2D 77.165 254 43 12 10 253 497919277 497919525 2.650000e-27 134.0
57 TraesCS5B01G399900 chr7A 78.696 230 41 7 10 232 251743501 251743273 3.400000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G399900 chr5B 577238440 577242656 4216 True 3932.400000 7788 98.863500 1 4217 2 chr5B.!!$R3 4216
1 TraesCS5B01G399900 chr5B 342181697 342182612 915 False 780.000000 913 95.827500 3249 4217 2 chr5B.!!$F1 968
2 TraesCS5B01G399900 chr5B 118953101 118956168 3067 True 379.000000 656 95.647750 3261 4217 4 chr5B.!!$R2 956
3 TraesCS5B01G399900 chr5B 577244178 577245020 842 True 355.666667 492 94.375333 1 697 3 chr5B.!!$R4 696
4 TraesCS5B01G399900 chr5D 469509588 469513145 3557 True 811.200000 1772 91.653000 9 3260 5 chr5D.!!$R3 3251
5 TraesCS5B01G399900 chr2B 373108239 373109196 957 True 880.950000 1674 99.112500 3261 4217 2 chr2B.!!$R2 956
6 TraesCS5B01G399900 chr2B 359315412 359316371 959 False 620.333333 1700 98.791000 3259 4217 3 chr2B.!!$F3 958
7 TraesCS5B01G399900 chr5A 590577771 590580330 2559 True 1110.333333 1648 91.848667 478 3238 3 chr5A.!!$R1 2760
8 TraesCS5B01G399900 chr4B 535340629 535341525 896 False 748.500000 941 94.842000 3261 4217 2 chr4B.!!$F1 956
9 TraesCS5B01G399900 chr6D 17967630 17968547 917 False 768.000000 898 95.558000 3256 4217 2 chr6D.!!$F2 961
10 TraesCS5B01G399900 chr7D 10632397 10633297 900 True 733.500000 811 94.903000 3260 4217 2 chr7D.!!$R1 957

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 1503 0.032130 TAGCTAGCTTTGATCGGCCG 59.968 55.0 24.88 22.12 0.0 6.13 F
2127 2696 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.00 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2782 0.108019 AACAAACACTCCCTCCGTCC 59.892 55.0 0.00 0.00 0.0 4.79 R
3651 6702 0.039978 CTCTGTAGGCGGCTATGTCG 60.040 60.0 22.63 10.62 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 173 8.600449 TTGCTTTCCCATTGTTTACTTTTATG 57.400 30.769 0.00 0.00 0.00 1.90
395 895 3.400054 GGTCGGTTCCCCAGGGAG 61.400 72.222 7.25 0.00 46.06 4.30
623 1126 7.962918 CCAGTAATTTTCAGTAATTCGTTGAGG 59.037 37.037 0.00 0.00 0.00 3.86
761 1275 0.247974 CGTTCCTTATCGACGCGTCT 60.248 55.000 33.94 20.67 0.00 4.18
915 1441 3.748863 CACAGCCAGTGTAGCTAGG 57.251 57.895 0.00 0.00 43.40 3.02
967 1502 1.789506 CTAGCTAGCTTTGATCGGCC 58.210 55.000 24.88 0.00 0.00 6.13
968 1503 0.032130 TAGCTAGCTTTGATCGGCCG 59.968 55.000 24.88 22.12 0.00 6.13
1131 1670 2.000701 TGGATGGTCGGATGGCCTT 61.001 57.895 3.32 0.00 0.00 4.35
1361 1903 2.501610 GCCCGTCCACCTCTCATC 59.498 66.667 0.00 0.00 0.00 2.92
1362 1904 2.060980 GCCCGTCCACCTCTCATCT 61.061 63.158 0.00 0.00 0.00 2.90
1363 1905 2.022240 GCCCGTCCACCTCTCATCTC 62.022 65.000 0.00 0.00 0.00 2.75
1364 1906 0.396417 CCCGTCCACCTCTCATCTCT 60.396 60.000 0.00 0.00 0.00 3.10
1365 1907 0.743688 CCGTCCACCTCTCATCTCTG 59.256 60.000 0.00 0.00 0.00 3.35
1366 1908 0.102120 CGTCCACCTCTCATCTCTGC 59.898 60.000 0.00 0.00 0.00 4.26
1367 1909 0.463620 GTCCACCTCTCATCTCTGCC 59.536 60.000 0.00 0.00 0.00 4.85
1368 1910 0.337773 TCCACCTCTCATCTCTGCCT 59.662 55.000 0.00 0.00 0.00 4.75
1369 1911 0.752054 CCACCTCTCATCTCTGCCTC 59.248 60.000 0.00 0.00 0.00 4.70
1370 1912 0.385029 CACCTCTCATCTCTGCCTCG 59.615 60.000 0.00 0.00 0.00 4.63
1482 2024 1.474017 GTGATTCGCGTGCGTACTAT 58.526 50.000 14.47 4.17 40.74 2.12
1483 2025 2.642995 GTGATTCGCGTGCGTACTATA 58.357 47.619 14.47 0.00 40.74 1.31
1484 2026 2.399754 GTGATTCGCGTGCGTACTATAC 59.600 50.000 14.47 4.16 40.74 1.47
1541 2083 5.823353 TCACGCGGTTTCTCTTTTATTTTT 58.177 33.333 12.47 0.00 0.00 1.94
1590 2136 2.529389 ACCGGCCTCTTGGGTTCT 60.529 61.111 0.00 0.00 37.43 3.01
1603 2149 7.686859 GCCTCTTGGGTTCTTTGTTTATTCTTT 60.687 37.037 0.00 0.00 37.43 2.52
1618 2165 0.606604 TCTTTCGTCCCCTTTCCTCG 59.393 55.000 0.00 0.00 0.00 4.63
1784 2350 2.287915 CGAGCAATCCCGGTATTTCTTG 59.712 50.000 0.00 0.00 0.00 3.02
1838 2407 4.832823 AGAATTCACCCCGAAAAATCAAGT 59.167 37.500 8.44 0.00 37.12 3.16
1839 2408 4.519540 ATTCACCCCGAAAAATCAAGTG 57.480 40.909 0.00 0.00 37.12 3.16
1840 2409 2.938838 TCACCCCGAAAAATCAAGTGT 58.061 42.857 0.00 0.00 0.00 3.55
1841 2410 2.882137 TCACCCCGAAAAATCAAGTGTC 59.118 45.455 0.00 0.00 0.00 3.67
1842 2411 1.877443 ACCCCGAAAAATCAAGTGTCG 59.123 47.619 0.00 0.00 0.00 4.35
1843 2412 2.147958 CCCCGAAAAATCAAGTGTCGA 58.852 47.619 0.00 0.00 33.63 4.20
1844 2413 2.747446 CCCCGAAAAATCAAGTGTCGAT 59.253 45.455 0.00 0.00 33.63 3.59
1845 2414 3.936453 CCCCGAAAAATCAAGTGTCGATA 59.064 43.478 0.00 0.00 33.63 2.92
1846 2415 4.574828 CCCCGAAAAATCAAGTGTCGATAT 59.425 41.667 0.00 0.00 33.63 1.63
1847 2416 5.501715 CCCGAAAAATCAAGTGTCGATATG 58.498 41.667 0.00 0.00 33.63 1.78
1848 2417 5.064707 CCCGAAAAATCAAGTGTCGATATGT 59.935 40.000 0.00 0.00 33.63 2.29
1849 2418 6.256975 CCCGAAAAATCAAGTGTCGATATGTA 59.743 38.462 0.00 0.00 33.63 2.29
1850 2419 7.042051 CCCGAAAAATCAAGTGTCGATATGTAT 60.042 37.037 0.00 0.00 33.63 2.29
1851 2420 8.335356 CCGAAAAATCAAGTGTCGATATGTATT 58.665 33.333 0.00 0.00 33.63 1.89
1852 2421 9.702726 CGAAAAATCAAGTGTCGATATGTATTT 57.297 29.630 0.00 0.00 33.63 1.40
1858 2427 8.996024 TCAAGTGTCGATATGTATTTCTTTGA 57.004 30.769 0.00 0.00 0.00 2.69
1859 2428 8.869897 TCAAGTGTCGATATGTATTTCTTTGAC 58.130 33.333 0.00 0.00 0.00 3.18
1860 2429 8.655970 CAAGTGTCGATATGTATTTCTTTGACA 58.344 33.333 0.00 0.00 0.00 3.58
1861 2430 8.412608 AGTGTCGATATGTATTTCTTTGACAG 57.587 34.615 0.00 0.00 34.83 3.51
1862 2431 8.251026 AGTGTCGATATGTATTTCTTTGACAGA 58.749 33.333 0.00 0.00 34.83 3.41
1863 2432 8.869897 GTGTCGATATGTATTTCTTTGACAGAA 58.130 33.333 0.00 0.00 39.99 3.02
1864 2433 9.599866 TGTCGATATGTATTTCTTTGACAGAAT 57.400 29.630 0.00 0.00 41.42 2.40
1866 2435 9.816354 TCGATATGTATTTCTTTGACAGAATCA 57.184 29.630 0.00 0.00 41.42 2.57
2120 2689 6.651975 AATGTTCTAATAGTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
2121 2690 5.121380 TGTTCTAATAGTACTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
2122 2691 5.128919 TGTTCTAATAGTACTCCCTCCGTC 58.871 45.833 0.00 0.00 0.00 4.79
2123 2692 4.363991 TCTAATAGTACTCCCTCCGTCC 57.636 50.000 0.00 0.00 0.00 4.79
2124 2693 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2125 2694 1.135094 ATAGTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
2126 2695 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2127 2696 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2128 2697 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2129 2698 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2130 2699 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2131 2700 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2132 2701 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2133 2702 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2134 2703 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2135 2704 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2136 2705 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2137 2706 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2145 2714 5.143916 CGAAAATACTTGTCGGAGGAATG 57.856 43.478 0.00 0.00 0.00 2.67
2146 2715 4.868171 CGAAAATACTTGTCGGAGGAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2147 2716 5.350365 CGAAAATACTTGTCGGAGGAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2148 2717 6.037172 CGAAAATACTTGTCGGAGGAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2149 2718 6.683974 AAATACTTGTCGGAGGAATGAATG 57.316 37.500 0.00 0.00 0.00 2.67
2150 2719 3.703001 ACTTGTCGGAGGAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
2151 2720 4.819105 ACTTGTCGGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2152 2721 5.359194 ACTTGTCGGAGGAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
2153 2722 5.360591 ACTTGTCGGAGGAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
2154 2723 5.129485 ACTTGTCGGAGGAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
2155 2724 6.323996 ACTTGTCGGAGGAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
2156 2725 6.332735 TGTCGGAGGAATGAATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2157 2726 6.068670 TGTCGGAGGAATGAATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2158 2727 6.016192 TGTCGGAGGAATGAATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
2159 2728 5.181433 TCGGAGGAATGAATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
2160 2729 5.048643 CGGAGGAATGAATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
2161 2730 6.148976 CGGAGGAATGAATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
2162 2731 7.148222 CGGAGGAATGAATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
2163 2732 8.524487 GGAGGAATGAATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
2164 2733 9.915629 GAGGAATGAATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
2217 2786 4.634349 TTTCGACAAGTATTTTCGGACG 57.366 40.909 0.00 0.00 33.50 4.79
2218 2787 2.598589 TCGACAAGTATTTTCGGACGG 58.401 47.619 0.00 0.00 33.50 4.79
2219 2788 2.228582 TCGACAAGTATTTTCGGACGGA 59.771 45.455 0.00 0.00 33.50 4.69
2220 2789 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2221 2790 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2222 2791 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2223 2792 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2224 2793 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2225 2794 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2226 2795 0.249398 ATTTTCGGACGGAGGGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
2247 2816 5.046529 GTGTTTGTTATTTGCACACATGGA 58.953 37.500 0.00 0.00 38.11 3.41
2268 2846 5.067936 TGGACGCTTTTGGTTTCTTATTTCA 59.932 36.000 0.00 0.00 0.00 2.69
2271 2849 4.385748 CGCTTTTGGTTTCTTATTTCAGCC 59.614 41.667 0.00 0.00 0.00 4.85
2375 2953 3.278574 ACCAAACGTATGGATCATGGTG 58.721 45.455 0.00 0.00 43.54 4.17
2392 2970 2.618241 TGGTGTTGCTGTTTGATCAGAC 59.382 45.455 9.40 9.40 37.61 3.51
2415 2994 2.478879 CGGTTGGCGATTAATTTGGACC 60.479 50.000 0.00 0.00 0.00 4.46
2422 3001 5.221541 TGGCGATTAATTTGGACCTTTTGTT 60.222 36.000 0.00 0.00 0.00 2.83
2432 3011 3.569701 TGGACCTTTTGTTTCTGATCAGC 59.430 43.478 18.36 4.87 0.00 4.26
2439 3018 6.405176 CCTTTTGTTTCTGATCAGCTATTCCC 60.405 42.308 18.36 2.21 0.00 3.97
2506 3085 6.540551 GGAAAGAGGTCTCTATTGGAAATGAC 59.459 42.308 0.43 0.00 39.39 3.06
2519 3098 1.478105 GAAATGACTGCCCAACCCATC 59.522 52.381 0.00 0.00 0.00 3.51
2520 3099 0.706433 AATGACTGCCCAACCCATCT 59.294 50.000 0.00 0.00 0.00 2.90
2521 3100 0.706433 ATGACTGCCCAACCCATCTT 59.294 50.000 0.00 0.00 0.00 2.40
2522 3101 0.038166 TGACTGCCCAACCCATCTTC 59.962 55.000 0.00 0.00 0.00 2.87
2526 3105 1.839994 CTGCCCAACCCATCTTCTAGA 59.160 52.381 0.00 0.00 0.00 2.43
2538 3117 6.013812 ACCCATCTTCTAGAAGCTATGGAATC 60.014 42.308 34.26 0.00 41.60 2.52
2574 3157 2.092968 TGAGCTTTACCCCATGTAGCTG 60.093 50.000 0.00 0.00 38.67 4.24
2613 3196 4.962995 AGAGAGCTTACCCAATGTAGCTAA 59.037 41.667 0.00 0.00 35.46 3.09
2623 3206 4.274459 CCCAATGTAGCTAACAGAATCTGC 59.726 45.833 10.62 0.00 42.70 4.26
2647 3416 5.048643 CAGAGTAGATACGGGTGACTAATGG 60.049 48.000 0.00 0.00 0.00 3.16
2699 3468 1.203994 AGCATGCAATCTTCTTGTGGC 59.796 47.619 21.98 0.00 0.00 5.01
2712 3481 2.690497 TCTTGTGGCGGTTCATTTTCAA 59.310 40.909 0.00 0.00 0.00 2.69
2924 3695 4.465512 CATGCACTTCCACGGCGC 62.466 66.667 6.90 0.00 0.00 6.53
3093 3864 1.371267 CGACGAACTGCGAAGGTCA 60.371 57.895 9.68 0.00 44.57 4.02
3110 3881 2.037381 GGTCAACTAGCTATAGCCCCAC 59.963 54.545 21.17 9.23 43.38 4.61
3138 3912 3.097728 GTGCAGACACCGTCGTCG 61.098 66.667 0.00 0.00 41.21 5.12
3156 3930 3.998672 TCGTTGGTGCCTCCGGAC 61.999 66.667 0.00 0.00 39.52 4.79
3162 3936 2.741211 GTGCCTCCGGACGTTTCC 60.741 66.667 0.00 0.00 38.77 3.13
3217 3991 5.104360 CCTCCAGGAGTAAGAAATGGATGAA 60.104 44.000 15.86 0.00 39.25 2.57
3478 6438 1.579429 GAATGCCGCCGTCAACTTT 59.421 52.632 0.00 0.00 0.00 2.66
3563 6524 2.374991 CATGTTTGGGCCCATGGTT 58.625 52.632 29.23 8.82 35.82 3.67
3650 6701 1.164662 GCTCATGGCGATGCAGATGT 61.165 55.000 3.45 0.00 0.00 3.06
3651 6702 0.866427 CTCATGGCGATGCAGATGTC 59.134 55.000 3.45 0.00 0.00 3.06
3652 6703 0.877213 TCATGGCGATGCAGATGTCG 60.877 55.000 3.45 3.09 40.62 4.35
3653 6704 0.877213 CATGGCGATGCAGATGTCGA 60.877 55.000 11.43 0.00 40.11 4.20
3654 6705 0.877649 ATGGCGATGCAGATGTCGAC 60.878 55.000 9.11 9.11 45.81 4.20
3655 6706 1.519234 GGCGATGCAGATGTCGACA 60.519 57.895 22.48 22.48 44.98 4.35
3656 6707 0.877649 GGCGATGCAGATGTCGACAT 60.878 55.000 30.37 30.37 44.98 3.06
3657 6708 1.602920 GGCGATGCAGATGTCGACATA 60.603 52.381 30.04 15.72 44.98 2.29
3658 6709 1.718178 GCGATGCAGATGTCGACATAG 59.282 52.381 30.04 24.51 40.11 2.23
3659 6710 1.718178 CGATGCAGATGTCGACATAGC 59.282 52.381 32.44 32.44 40.11 2.97
3660 6711 2.064762 GATGCAGATGTCGACATAGCC 58.935 52.381 34.14 23.16 36.94 3.93
3661 6712 0.249031 TGCAGATGTCGACATAGCCG 60.249 55.000 34.14 23.20 36.94 5.52
3662 6713 1.552348 GCAGATGTCGACATAGCCGC 61.552 60.000 30.58 24.89 36.57 6.53
3663 6714 0.941463 CAGATGTCGACATAGCCGCC 60.941 60.000 30.04 16.63 36.57 6.13
3664 6715 1.109920 AGATGTCGACATAGCCGCCT 61.110 55.000 30.04 18.57 36.57 5.52
3665 6716 0.596577 GATGTCGACATAGCCGCCTA 59.403 55.000 30.04 0.00 36.57 3.93
3666 6717 0.314302 ATGTCGACATAGCCGCCTAC 59.686 55.000 29.05 0.00 34.26 3.18
3667 6718 1.033202 TGTCGACATAGCCGCCTACA 61.033 55.000 15.76 0.00 0.00 2.74
3668 6719 0.317938 GTCGACATAGCCGCCTACAG 60.318 60.000 11.55 0.00 0.00 2.74
3669 6720 0.464916 TCGACATAGCCGCCTACAGA 60.465 55.000 0.00 0.00 0.00 3.41
3670 6721 0.039978 CGACATAGCCGCCTACAGAG 60.040 60.000 0.00 0.00 0.00 3.35
3671 6722 0.319125 GACATAGCCGCCTACAGAGC 60.319 60.000 0.00 0.00 0.00 4.09
3672 6723 1.043116 ACATAGCCGCCTACAGAGCA 61.043 55.000 0.00 0.00 0.00 4.26
3673 6724 0.319383 CATAGCCGCCTACAGAGCAG 60.319 60.000 0.00 0.00 0.00 4.24
3674 6725 1.467678 ATAGCCGCCTACAGAGCAGG 61.468 60.000 0.00 0.00 36.16 4.85
3675 6726 2.567664 TAGCCGCCTACAGAGCAGGA 62.568 60.000 0.00 0.00 34.91 3.86
3676 6727 2.811101 CCGCCTACAGAGCAGGAG 59.189 66.667 0.00 0.00 34.91 3.69
3677 6728 2.105930 CGCCTACAGAGCAGGAGC 59.894 66.667 0.00 0.00 42.56 4.70
3693 6744 4.060372 GCTCATGGCGATGCAGAT 57.940 55.556 3.45 0.00 0.00 2.90
3694 6745 3.222053 GCTCATGGCGATGCAGATA 57.778 52.632 3.45 0.00 0.00 1.98
3703 6754 1.079543 GATGCAGATATCGGCCGCT 60.080 57.895 23.51 15.09 36.20 5.52
3877 6929 1.679032 GCCCTTGGTTGCTTACGAGAT 60.679 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
335 456 2.564062 TGAAAACGTCCCCCTACTAGTG 59.436 50.000 5.39 0.00 0.00 2.74
336 457 2.893424 TGAAAACGTCCCCCTACTAGT 58.107 47.619 0.00 0.00 0.00 2.57
337 458 5.803237 ATATGAAAACGTCCCCCTACTAG 57.197 43.478 0.00 0.00 0.00 2.57
338 459 5.662208 TCAATATGAAAACGTCCCCCTACTA 59.338 40.000 0.00 0.00 0.00 1.82
395 895 6.251376 CAGCAAGAAAATAAATTACACTCGGC 59.749 38.462 0.00 0.00 0.00 5.54
397 897 6.747280 CCCAGCAAGAAAATAAATTACACTCG 59.253 38.462 0.00 0.00 0.00 4.18
593 1096 8.561738 ACGAATTACTGAAAATTACTGGATGT 57.438 30.769 0.00 0.00 0.00 3.06
623 1126 6.150474 AGAGAGAGAGCAAGTAACTGTACTTC 59.850 42.308 0.00 0.00 45.63 3.01
1113 1652 2.000701 AAGGCCATCCGACCATCCA 61.001 57.895 5.01 0.00 37.47 3.41
1205 1744 1.300233 GGCATGATCTCGTCCGACC 60.300 63.158 0.00 0.00 0.00 4.79
1254 1793 3.847602 CCGCTGGAGCAGGAGGAG 61.848 72.222 0.00 0.00 42.21 3.69
1361 1903 1.500844 CAAGCAAAGCGAGGCAGAG 59.499 57.895 0.00 0.00 0.00 3.35
1362 1904 2.620112 GCAAGCAAAGCGAGGCAGA 61.620 57.895 0.00 0.00 0.00 4.26
1363 1905 2.126580 GCAAGCAAAGCGAGGCAG 60.127 61.111 0.00 0.00 0.00 4.85
1370 1912 0.318955 AACCATGTCGCAAGCAAAGC 60.319 50.000 0.00 0.00 37.18 3.51
1541 2083 4.735369 AGAGTGTGGAGAGAGAAGAAGAA 58.265 43.478 0.00 0.00 0.00 2.52
1542 2084 4.042809 AGAGAGTGTGGAGAGAGAAGAAGA 59.957 45.833 0.00 0.00 0.00 2.87
1543 2085 4.335416 AGAGAGTGTGGAGAGAGAAGAAG 58.665 47.826 0.00 0.00 0.00 2.85
1590 2136 6.239092 GGAAAGGGGACGAAAGAATAAACAAA 60.239 38.462 0.00 0.00 0.00 2.83
1603 2149 3.755628 CGCGAGGAAAGGGGACGA 61.756 66.667 0.00 0.00 0.00 4.20
1695 2261 4.857037 TGTACTTGTCTGATCAAACGATCG 59.143 41.667 14.88 14.88 41.98 3.69
1729 2295 8.671921 GCATGCTTAGCTCAACATGTATATTAT 58.328 33.333 11.37 0.00 41.51 1.28
1730 2296 7.879677 AGCATGCTTAGCTCAACATGTATATTA 59.120 33.333 16.30 0.00 41.51 0.98
1771 2337 1.472728 CCTCCGTCAAGAAATACCGGG 60.473 57.143 6.32 0.00 39.13 5.73
1784 2350 2.877786 GTTAGCTAGTACTCCCTCCGTC 59.122 54.545 0.00 0.00 0.00 4.79
1823 2392 2.147958 TCGACACTTGATTTTTCGGGG 58.852 47.619 0.00 0.00 0.00 5.73
1838 2407 8.996024 TTCTGTCAAAGAAATACATATCGACA 57.004 30.769 0.00 0.00 42.09 4.35
1864 2433 5.063312 CGCACACATACATATCAACACTTGA 59.937 40.000 0.00 0.00 45.01 3.02
1865 2434 5.257864 CGCACACATACATATCAACACTTG 58.742 41.667 0.00 0.00 0.00 3.16
1866 2435 4.201812 GCGCACACATACATATCAACACTT 60.202 41.667 0.30 0.00 0.00 3.16
1867 2436 3.309682 GCGCACACATACATATCAACACT 59.690 43.478 0.30 0.00 0.00 3.55
1868 2437 3.607439 GCGCACACATACATATCAACAC 58.393 45.455 0.30 0.00 0.00 3.32
1869 2438 2.283884 CGCGCACACATACATATCAACA 59.716 45.455 8.75 0.00 0.00 3.33
1918 2487 1.857638 GCTTCTGCCCCTTCTTCCCT 61.858 60.000 0.00 0.00 0.00 4.20
2057 2626 6.100134 TGAAGTGATGGATAGATGTGGATGAA 59.900 38.462 0.00 0.00 0.00 2.57
2059 2628 5.699915 GTGAAGTGATGGATAGATGTGGATG 59.300 44.000 0.00 0.00 0.00 3.51
2112 2681 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2113 2682 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2114 2683 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2115 2684 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2116 2685 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2117 2686 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2123 2692 4.868171 TCATTCCTCCGACAAGTATTTTCG 59.132 41.667 0.00 0.00 0.00 3.46
2124 2693 6.737254 TTCATTCCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
2125 2694 6.659242 ACATTCATTCCTCCGACAAGTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
2126 2695 6.180472 ACATTCATTCCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2127 2696 5.745227 ACATTCATTCCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2128 2697 5.359194 ACATTCATTCCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2129 2698 4.819105 ACATTCATTCCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2130 2699 3.703001 ACATTCATTCCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2131 2700 5.605534 AGATACATTCATTCCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2132 2701 5.614324 AGATACATTCATTCCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2133 2702 6.016192 GTCTAGATACATTCATTCCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
2134 2703 6.383415 GTCTAGATACATTCATTCCTCCGAC 58.617 44.000 0.00 0.00 0.00 4.79
2135 2704 5.181433 CGTCTAGATACATTCATTCCTCCGA 59.819 44.000 0.00 0.00 0.00 4.55
2136 2705 5.048643 ACGTCTAGATACATTCATTCCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
2137 2706 6.334102 ACGTCTAGATACATTCATTCCTCC 57.666 41.667 0.00 0.00 0.00 4.30
2138 2707 9.915629 AAATACGTCTAGATACATTCATTCCTC 57.084 33.333 0.00 0.00 0.00 3.71
2194 2763 5.433855 CGTCCGAAAATACTTGTCGAAAAA 58.566 37.500 1.13 0.00 36.92 1.94
2195 2764 4.084433 CCGTCCGAAAATACTTGTCGAAAA 60.084 41.667 1.13 0.00 36.92 2.29
2196 2765 3.429543 CCGTCCGAAAATACTTGTCGAAA 59.570 43.478 1.13 0.00 36.92 3.46
2197 2766 2.988493 CCGTCCGAAAATACTTGTCGAA 59.012 45.455 1.13 0.00 36.92 3.71
2198 2767 2.228582 TCCGTCCGAAAATACTTGTCGA 59.771 45.455 1.13 0.00 36.92 4.20
2199 2768 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2200 2769 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2201 2770 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2202 2771 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2203 2772 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2204 2773 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2205 2774 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2206 2775 1.479323 CACTCCCTCCGTCCGAAAATA 59.521 52.381 0.00 0.00 0.00 1.40
2207 2776 0.249398 CACTCCCTCCGTCCGAAAAT 59.751 55.000 0.00 0.00 0.00 1.82
2208 2777 1.117142 ACACTCCCTCCGTCCGAAAA 61.117 55.000 0.00 0.00 0.00 2.29
2209 2778 1.117142 AACACTCCCTCCGTCCGAAA 61.117 55.000 0.00 0.00 0.00 3.46
2210 2779 1.117142 AAACACTCCCTCCGTCCGAA 61.117 55.000 0.00 0.00 0.00 4.30
2211 2780 1.532316 AAACACTCCCTCCGTCCGA 60.532 57.895 0.00 0.00 0.00 4.55
2212 2781 1.374252 CAAACACTCCCTCCGTCCG 60.374 63.158 0.00 0.00 0.00 4.79
2213 2782 0.108019 AACAAACACTCCCTCCGTCC 59.892 55.000 0.00 0.00 0.00 4.79
2214 2783 2.825861 TAACAAACACTCCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
2215 2784 3.782656 AATAACAAACACTCCCTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
2216 2785 3.365969 GCAAATAACAAACACTCCCTCCG 60.366 47.826 0.00 0.00 0.00 4.63
2217 2786 3.572255 TGCAAATAACAAACACTCCCTCC 59.428 43.478 0.00 0.00 0.00 4.30
2218 2787 4.037446 TGTGCAAATAACAAACACTCCCTC 59.963 41.667 0.00 0.00 32.49 4.30
2219 2788 3.957497 TGTGCAAATAACAAACACTCCCT 59.043 39.130 0.00 0.00 32.49 4.20
2220 2789 4.048504 GTGTGCAAATAACAAACACTCCC 58.951 43.478 0.00 0.00 38.44 4.30
2221 2790 4.677584 TGTGTGCAAATAACAAACACTCC 58.322 39.130 5.90 0.00 41.31 3.85
2222 2791 5.175491 CCATGTGTGCAAATAACAAACACTC 59.825 40.000 5.90 0.00 38.06 3.51
2223 2792 5.049167 CCATGTGTGCAAATAACAAACACT 58.951 37.500 5.90 0.00 38.06 3.55
2224 2793 5.046529 TCCATGTGTGCAAATAACAAACAC 58.953 37.500 0.00 0.00 38.06 3.32
2225 2794 5.046529 GTCCATGTGTGCAAATAACAAACA 58.953 37.500 0.00 0.00 39.51 2.83
2226 2795 4.148000 CGTCCATGTGTGCAAATAACAAAC 59.852 41.667 0.00 0.00 0.00 2.93
2247 2816 4.982295 GCTGAAATAAGAAACCAAAAGCGT 59.018 37.500 0.00 0.00 0.00 5.07
2268 2846 9.752885 TTCTTTGAGAGAAAAAGGCAGTAGGCT 62.753 40.741 0.00 0.00 46.18 4.58
2271 2849 6.867662 TTCTTTGAGAGAAAAAGGCAGTAG 57.132 37.500 0.00 0.00 41.34 2.57
2375 2953 1.722751 CGCGTCTGATCAAACAGCAAC 60.723 52.381 13.65 0.00 37.75 4.17
2415 2994 6.376581 AGGGAATAGCTGATCAGAAACAAAAG 59.623 38.462 27.04 0.00 0.00 2.27
2422 3001 7.241628 TGTCTATAGGGAATAGCTGATCAGAA 58.758 38.462 27.04 13.47 37.98 3.02
2456 3035 9.931210 CCAATACGGTAATTAACTGAAAATCTC 57.069 33.333 0.00 0.00 37.93 2.75
2479 3058 6.448369 TTTCCAATAGAGACCTCTTTCCAA 57.552 37.500 4.73 0.00 40.93 3.53
2506 3085 1.839994 TCTAGAAGATGGGTTGGGCAG 59.160 52.381 0.00 0.00 0.00 4.85
2574 3157 0.249657 CTCTGCCCTGCGGATTCTAC 60.250 60.000 0.00 0.00 43.40 2.59
2613 3196 4.277174 CCGTATCTACTCTGCAGATTCTGT 59.723 45.833 18.63 14.02 34.58 3.41
2623 3206 5.048643 CCATTAGTCACCCGTATCTACTCTG 60.049 48.000 0.00 0.00 0.00 3.35
2647 3416 5.279910 CCTCATCTCAAATATCCTCACTCCC 60.280 48.000 0.00 0.00 0.00 4.30
2699 3468 6.140737 CGAAGAGAAAAGTTGAAAATGAACCG 59.859 38.462 0.00 0.00 0.00 4.44
2712 3481 4.163458 TGCATATACCCCGAAGAGAAAAGT 59.837 41.667 0.00 0.00 0.00 2.66
2943 3714 0.729478 ACACGAACGACATCTGCTCG 60.729 55.000 0.14 0.00 37.17 5.03
3093 3864 1.339097 CCGTGGGGCTATAGCTAGTT 58.661 55.000 23.53 0.00 41.70 2.24
3122 3893 3.531920 GACGACGACGGTGTCTGCA 62.532 63.158 12.58 0.00 44.46 4.41
3135 3909 2.737376 GGAGGCACCAACGACGAC 60.737 66.667 0.00 0.00 38.79 4.34
3136 3910 4.351938 CGGAGGCACCAACGACGA 62.352 66.667 0.00 0.00 38.90 4.20
3156 3930 2.226437 CAGTCCCATGTCAAAGGAAACG 59.774 50.000 0.00 0.00 0.00 3.60
3162 3936 1.542915 CCAAGCAGTCCCATGTCAAAG 59.457 52.381 0.00 0.00 0.00 2.77
3301 4075 0.243907 CATGGAGTCGTTCGTCCAGT 59.756 55.000 9.63 0.00 46.09 4.00
3650 6701 0.464916 TCTGTAGGCGGCTATGTCGA 60.465 55.000 22.63 12.65 29.41 4.20
3651 6702 0.039978 CTCTGTAGGCGGCTATGTCG 60.040 60.000 22.63 10.62 0.00 4.35
3652 6703 0.319125 GCTCTGTAGGCGGCTATGTC 60.319 60.000 22.63 9.99 0.00 3.06
3653 6704 1.043116 TGCTCTGTAGGCGGCTATGT 61.043 55.000 22.63 0.00 0.00 2.29
3654 6705 0.319383 CTGCTCTGTAGGCGGCTATG 60.319 60.000 22.63 17.15 0.00 2.23
3655 6706 1.467678 CCTGCTCTGTAGGCGGCTAT 61.468 60.000 22.63 0.00 34.99 2.97
3656 6707 2.127869 CCTGCTCTGTAGGCGGCTA 61.128 63.158 15.70 15.70 34.99 3.93
3657 6708 3.465403 CCTGCTCTGTAGGCGGCT 61.465 66.667 18.33 18.33 34.99 5.52
3658 6709 3.438017 CTCCTGCTCTGTAGGCGGC 62.438 68.421 0.00 0.00 35.38 6.53
3659 6710 2.811101 CTCCTGCTCTGTAGGCGG 59.189 66.667 0.00 0.00 35.38 6.13
3660 6711 2.105930 GCTCCTGCTCTGTAGGCG 59.894 66.667 0.00 0.00 35.38 5.52
3670 6721 2.110627 ATCGCCATGAGCTCCTGC 59.889 61.111 12.15 10.08 40.39 4.85
3671 6722 2.252346 GCATCGCCATGAGCTCCTG 61.252 63.158 12.15 11.90 40.39 3.86
3672 6723 2.110627 GCATCGCCATGAGCTCCT 59.889 61.111 12.15 0.00 40.39 3.69
3673 6724 2.203112 TGCATCGCCATGAGCTCC 60.203 61.111 12.15 0.00 40.39 4.70
3674 6725 0.603172 ATCTGCATCGCCATGAGCTC 60.603 55.000 6.82 6.82 40.39 4.09
3675 6726 0.683412 TATCTGCATCGCCATGAGCT 59.317 50.000 0.00 0.00 40.39 4.09
3676 6727 1.664659 GATATCTGCATCGCCATGAGC 59.335 52.381 0.00 0.00 38.52 4.26
3677 6728 1.925185 CGATATCTGCATCGCCATGAG 59.075 52.381 0.00 0.00 41.12 2.90
3678 6729 1.404583 CCGATATCTGCATCGCCATGA 60.405 52.381 1.89 0.00 45.07 3.07
3679 6730 1.004595 CCGATATCTGCATCGCCATG 58.995 55.000 1.89 0.00 45.07 3.66
3680 6731 0.742281 GCCGATATCTGCATCGCCAT 60.742 55.000 13.62 0.00 45.07 4.40
3681 6732 1.374631 GCCGATATCTGCATCGCCA 60.375 57.895 13.62 0.00 45.07 5.69
3682 6733 2.103042 GGCCGATATCTGCATCGCC 61.103 63.158 19.16 7.91 45.07 5.54
3683 6734 2.447887 CGGCCGATATCTGCATCGC 61.448 63.158 24.07 2.86 45.07 4.58
3684 6735 2.447887 GCGGCCGATATCTGCATCG 61.448 63.158 33.48 15.03 45.81 3.84
3685 6736 1.079543 AGCGGCCGATATCTGCATC 60.080 57.895 33.48 6.65 38.26 3.91
3686 6737 1.375140 CAGCGGCCGATATCTGCAT 60.375 57.895 33.48 3.66 38.26 3.96
3687 6738 2.029518 CAGCGGCCGATATCTGCA 59.970 61.111 33.48 0.00 38.26 4.41
3688 6739 2.740055 CCAGCGGCCGATATCTGC 60.740 66.667 33.48 9.27 36.12 4.26
3689 6740 1.080230 CTCCAGCGGCCGATATCTG 60.080 63.158 33.48 25.29 0.00 2.90
3690 6741 2.279069 CCTCCAGCGGCCGATATCT 61.279 63.158 33.48 14.17 0.00 1.98
3691 6742 2.262915 CCTCCAGCGGCCGATATC 59.737 66.667 33.48 11.55 0.00 1.63
3692 6743 2.524394 ACCTCCAGCGGCCGATAT 60.524 61.111 33.48 11.33 0.00 1.63
3693 6744 3.536917 CACCTCCAGCGGCCGATA 61.537 66.667 33.48 7.74 0.00 2.92
3703 6754 1.410004 ACTCGACTTCAACACCTCCA 58.590 50.000 0.00 0.00 0.00 3.86
3877 6929 4.578871 CTCACACTCCATGGATTTGTACA 58.421 43.478 22.63 14.25 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.