Multiple sequence alignment - TraesCS5B01G399100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G399100 chr5B 100.000 3063 0 0 1 3063 576255557 576258619 0.000000e+00 5657.0
1 TraesCS5B01G399100 chr5B 84.045 539 74 8 1699 2233 576245117 576245647 3.290000e-140 508.0
2 TraesCS5B01G399100 chr5B 81.748 515 64 20 997 1482 576213456 576213969 1.600000e-108 403.0
3 TraesCS5B01G399100 chr5B 80.493 487 61 22 986 1449 576221441 576221916 3.530000e-90 342.0
4 TraesCS5B01G399100 chr5B 100.000 180 0 0 3515 3694 576259071 576259250 2.130000e-87 333.0
5 TraesCS5B01G399100 chr5B 82.210 371 58 7 2336 2704 576245710 576246074 2.770000e-81 313.0
6 TraesCS5B01G399100 chr5B 77.933 358 69 9 2343 2695 576055517 576055869 8.030000e-52 215.0
7 TraesCS5B01G399100 chr5B 77.374 358 71 9 2343 2695 576161943 576162295 1.740000e-48 204.0
8 TraesCS5B01G399100 chr5A 92.065 1424 98 11 1540 2958 589579609 589581022 0.000000e+00 1989.0
9 TraesCS5B01G399100 chr5A 88.712 691 47 21 833 1505 589578944 589579621 0.000000e+00 815.0
10 TraesCS5B01G399100 chr5A 83.743 529 73 9 1698 2221 589337429 589337949 4.290000e-134 488.0
11 TraesCS5B01G399100 chr5A 82.495 537 80 10 1699 2230 589372693 589373220 3.360000e-125 459.0
12 TraesCS5B01G399100 chr5A 82.625 518 64 16 987 1482 589315593 589316106 5.670000e-118 435.0
13 TraesCS5B01G399100 chr5A 80.843 522 69 15 995 1499 589366362 589366869 7.490000e-102 381.0
14 TraesCS5B01G399100 chr5A 83.242 364 59 2 2339 2701 589316348 589316710 2.130000e-87 333.0
15 TraesCS5B01G399100 chr5A 84.503 342 46 5 2336 2675 589373275 589373611 7.650000e-87 331.0
16 TraesCS5B01G399100 chr5D 91.311 1381 81 12 1588 2959 469285202 469286552 0.000000e+00 1849.0
17 TraesCS5B01G399100 chr5D 96.986 564 17 0 936 1499 469284636 469285199 0.000000e+00 948.0
18 TraesCS5B01G399100 chr5D 92.972 498 20 8 253 737 469283649 469284144 0.000000e+00 712.0
19 TraesCS5B01G399100 chr5D 83.488 539 77 8 1699 2233 469271655 469272185 3.310000e-135 492.0
20 TraesCS5B01G399100 chr5D 82.890 526 78 5 1697 2219 469236122 469236638 2.600000e-126 462.0
21 TraesCS5B01G399100 chr5D 81.227 554 94 5 1668 2219 469242701 469243246 4.380000e-119 438.0
22 TraesCS5B01G399100 chr5D 81.853 518 61 13 997 1482 469235387 469235903 4.440000e-109 405.0
23 TraesCS5B01G399100 chr5D 80.851 517 67 12 986 1480 469241871 469242377 9.680000e-101 377.0
24 TraesCS5B01G399100 chr5D 80.354 509 85 10 1714 2219 469245316 469245812 4.510000e-99 372.0
25 TraesCS5B01G399100 chr5D 80.114 528 69 19 988 1495 469269529 469270040 9.750000e-96 361.0
26 TraesCS5B01G399100 chr5D 83.516 364 60 0 2338 2701 469243329 469243692 1.270000e-89 340.0
27 TraesCS5B01G399100 chr5D 81.868 364 64 2 2339 2701 469236726 469237088 4.630000e-79 305.0
28 TraesCS5B01G399100 chr5D 95.364 151 2 2 793 939 469284145 469284294 6.170000e-58 235.0
29 TraesCS5B01G399100 chr5D 87.500 120 15 0 2582 2701 469237151 469237270 4.970000e-29 139.0
30 TraesCS5B01G399100 chr5D 97.917 48 1 0 3010 3057 469287006 469287053 2.360000e-12 84.2
31 TraesCS5B01G399100 chr7D 83.943 492 61 16 997 1482 160015642 160015163 4.350000e-124 455.0
32 TraesCS5B01G399100 chr6B 100.000 76 0 0 1 76 378948427 378948352 1.380000e-29 141.0
33 TraesCS5B01G399100 chr6B 98.684 76 0 1 1 76 12873208 12873282 2.310000e-27 134.0
34 TraesCS5B01G399100 chr2A 97.368 76 2 0 1 76 654435611 654435686 2.990000e-26 130.0
35 TraesCS5B01G399100 chr2A 97.436 39 1 0 2818 2856 734533040 734533078 2.380000e-07 67.6
36 TraesCS5B01G399100 chr4B 100.000 39 0 0 2818 2856 667902934 667902896 5.120000e-09 73.1
37 TraesCS5B01G399100 chr4D 74.576 177 38 6 278 451 502049440 502049612 1.840000e-08 71.3
38 TraesCS5B01G399100 chr7A 95.238 42 2 0 2815 2856 56727697 56727738 2.380000e-07 67.6
39 TraesCS5B01G399100 chr7A 86.667 60 3 3 2819 2876 118450415 118450359 1.110000e-05 62.1
40 TraesCS5B01G399100 chr3D 97.436 39 1 0 2818 2856 562889013 562888975 2.380000e-07 67.6
41 TraesCS5B01G399100 chr3B 97.436 39 1 0 2818 2856 226511841 226511879 2.380000e-07 67.6
42 TraesCS5B01G399100 chr1A 95.238 42 2 0 2815 2856 563172767 563172726 2.380000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G399100 chr5B 576255557 576259250 3693 False 2995.00 5657 100.00000 1 3694 2 chr5B.!!$F6 3693
1 TraesCS5B01G399100 chr5B 576245117 576246074 957 False 410.50 508 83.12750 1699 2704 2 chr5B.!!$F5 1005
2 TraesCS5B01G399100 chr5B 576213456 576213969 513 False 403.00 403 81.74800 997 1482 1 chr5B.!!$F3 485
3 TraesCS5B01G399100 chr5A 589578944 589581022 2078 False 1402.00 1989 90.38850 833 2958 2 chr5A.!!$F5 2125
4 TraesCS5B01G399100 chr5A 589337429 589337949 520 False 488.00 488 83.74300 1698 2221 1 chr5A.!!$F1 523
5 TraesCS5B01G399100 chr5A 589372693 589373611 918 False 395.00 459 83.49900 1699 2675 2 chr5A.!!$F4 976
6 TraesCS5B01G399100 chr5A 589315593 589316710 1117 False 384.00 435 82.93350 987 2701 2 chr5A.!!$F3 1714
7 TraesCS5B01G399100 chr5A 589366362 589366869 507 False 381.00 381 80.84300 995 1499 1 chr5A.!!$F2 504
8 TraesCS5B01G399100 chr5D 469283649 469287053 3404 False 765.64 1849 94.91000 253 3057 5 chr5D.!!$F4 2804
9 TraesCS5B01G399100 chr5D 469269529 469272185 2656 False 426.50 492 81.80100 988 2233 2 chr5D.!!$F3 1245
10 TraesCS5B01G399100 chr5D 469241871 469245812 3941 False 381.75 438 81.48700 986 2701 4 chr5D.!!$F2 1715
11 TraesCS5B01G399100 chr5D 469235387 469237270 1883 False 327.75 462 83.52775 997 2701 4 chr5D.!!$F1 1704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.037303 ACCTCTGCAGTGGTTCCATG 59.963 55.0 30.22 9.12 38.65 3.66 F
74 75 0.037303 CTCTGCAGTGGTTCCATGGT 59.963 55.0 14.67 0.00 0.00 3.55 F
167 168 0.249398 ATAGTGAGTTGTGGCCCGAC 59.751 55.0 0.00 1.39 0.00 4.79 F
955 1332 0.250727 ACCGCCACACAACAGCTATT 60.251 50.0 0.00 0.00 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 3542 0.029433 CGATCTCGAATGCACCTCGA 59.971 55.000 18.65 18.65 42.75 4.04 R
2015 3875 0.392193 AGATGGTGAAGCTGCCGAAG 60.392 55.000 0.00 0.00 0.00 3.79 R
2140 4000 1.603802 TCGTAAACTCGTCGAACCACT 59.396 47.619 0.00 0.00 0.00 4.00 R
2719 4795 1.001268 CGTAGCTAGCGACCATCACAT 60.001 52.381 20.49 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.841556 TCCTCTCGTGGCCAAAGGT 60.842 57.895 7.24 0.00 0.00 3.50
19 20 1.672356 CCTCTCGTGGCCAAAGGTG 60.672 63.158 7.24 0.73 0.00 4.00
20 21 2.281484 TCTCGTGGCCAAAGGTGC 60.281 61.111 7.24 0.00 0.00 5.01
29 30 2.093306 GCCAAAGGTGCCAAAATACC 57.907 50.000 0.00 0.00 37.23 2.73
31 32 2.353704 GCCAAAGGTGCCAAAATACCTC 60.354 50.000 0.00 0.00 46.28 3.85
32 33 3.165071 CCAAAGGTGCCAAAATACCTCT 58.835 45.455 0.00 0.00 46.28 3.69
33 34 3.056607 CCAAAGGTGCCAAAATACCTCTG 60.057 47.826 0.00 0.00 46.28 3.35
34 35 3.525800 AAGGTGCCAAAATACCTCTGT 57.474 42.857 0.00 0.00 46.28 3.41
35 36 3.073274 AGGTGCCAAAATACCTCTGTC 57.927 47.619 0.00 0.00 43.69 3.51
36 37 2.644798 AGGTGCCAAAATACCTCTGTCT 59.355 45.455 0.00 0.00 43.69 3.41
37 38 3.844211 AGGTGCCAAAATACCTCTGTCTA 59.156 43.478 0.00 0.00 43.69 2.59
38 39 3.939592 GGTGCCAAAATACCTCTGTCTAC 59.060 47.826 0.00 0.00 34.11 2.59
39 40 3.939592 GTGCCAAAATACCTCTGTCTACC 59.060 47.826 0.00 0.00 0.00 3.18
40 41 3.195661 GCCAAAATACCTCTGTCTACCG 58.804 50.000 0.00 0.00 0.00 4.02
41 42 3.195661 CCAAAATACCTCTGTCTACCGC 58.804 50.000 0.00 0.00 0.00 5.68
42 43 3.195661 CAAAATACCTCTGTCTACCGCC 58.804 50.000 0.00 0.00 0.00 6.13
43 44 2.154567 AATACCTCTGTCTACCGCCA 57.845 50.000 0.00 0.00 0.00 5.69
44 45 1.400737 ATACCTCTGTCTACCGCCAC 58.599 55.000 0.00 0.00 0.00 5.01
45 46 0.330604 TACCTCTGTCTACCGCCACT 59.669 55.000 0.00 0.00 0.00 4.00
46 47 0.542232 ACCTCTGTCTACCGCCACTT 60.542 55.000 0.00 0.00 0.00 3.16
47 48 0.173708 CCTCTGTCTACCGCCACTTC 59.826 60.000 0.00 0.00 0.00 3.01
48 49 0.888619 CTCTGTCTACCGCCACTTCA 59.111 55.000 0.00 0.00 0.00 3.02
49 50 1.272490 CTCTGTCTACCGCCACTTCAA 59.728 52.381 0.00 0.00 0.00 2.69
50 51 1.689813 TCTGTCTACCGCCACTTCAAA 59.310 47.619 0.00 0.00 0.00 2.69
51 52 1.798813 CTGTCTACCGCCACTTCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
52 53 1.139256 TGTCTACCGCCACTTCAAACA 59.861 47.619 0.00 0.00 0.00 2.83
53 54 2.215196 GTCTACCGCCACTTCAAACAA 58.785 47.619 0.00 0.00 0.00 2.83
54 55 2.032290 GTCTACCGCCACTTCAAACAAC 60.032 50.000 0.00 0.00 0.00 3.32
55 56 1.265905 CTACCGCCACTTCAAACAACC 59.734 52.381 0.00 0.00 0.00 3.77
56 57 0.395173 ACCGCCACTTCAAACAACCT 60.395 50.000 0.00 0.00 0.00 3.50
57 58 0.310854 CCGCCACTTCAAACAACCTC 59.689 55.000 0.00 0.00 0.00 3.85
58 59 1.308998 CGCCACTTCAAACAACCTCT 58.691 50.000 0.00 0.00 0.00 3.69
59 60 1.002468 CGCCACTTCAAACAACCTCTG 60.002 52.381 0.00 0.00 0.00 3.35
60 61 1.269257 GCCACTTCAAACAACCTCTGC 60.269 52.381 0.00 0.00 0.00 4.26
61 62 2.023673 CCACTTCAAACAACCTCTGCA 58.976 47.619 0.00 0.00 0.00 4.41
62 63 2.033801 CCACTTCAAACAACCTCTGCAG 59.966 50.000 7.63 7.63 0.00 4.41
63 64 2.684881 CACTTCAAACAACCTCTGCAGT 59.315 45.455 14.67 0.00 0.00 4.40
64 65 2.684881 ACTTCAAACAACCTCTGCAGTG 59.315 45.455 14.67 11.58 0.00 3.66
65 66 1.679139 TCAAACAACCTCTGCAGTGG 58.321 50.000 28.92 28.92 34.99 4.00
66 67 1.064758 TCAAACAACCTCTGCAGTGGT 60.065 47.619 30.22 30.22 43.09 4.16
68 69 1.680338 AACAACCTCTGCAGTGGTTC 58.320 50.000 37.95 0.00 45.60 3.62
69 70 0.179018 ACAACCTCTGCAGTGGTTCC 60.179 55.000 37.95 0.00 45.60 3.62
70 71 0.179020 CAACCTCTGCAGTGGTTCCA 60.179 55.000 37.95 9.32 45.60 3.53
71 72 0.773644 AACCTCTGCAGTGGTTCCAT 59.226 50.000 36.13 21.63 45.60 3.41
72 73 0.037303 ACCTCTGCAGTGGTTCCATG 59.963 55.000 30.22 9.12 38.65 3.66
73 74 0.679002 CCTCTGCAGTGGTTCCATGG 60.679 60.000 23.87 4.97 0.00 3.66
74 75 0.037303 CTCTGCAGTGGTTCCATGGT 59.963 55.000 14.67 0.00 0.00 3.55
75 76 0.250858 TCTGCAGTGGTTCCATGGTG 60.251 55.000 14.67 2.17 0.00 4.17
76 77 0.538057 CTGCAGTGGTTCCATGGTGT 60.538 55.000 12.58 0.00 0.00 4.16
77 78 0.537143 TGCAGTGGTTCCATGGTGTC 60.537 55.000 12.58 3.42 0.00 3.67
78 79 0.537143 GCAGTGGTTCCATGGTGTCA 60.537 55.000 12.58 5.63 0.00 3.58
79 80 1.527034 CAGTGGTTCCATGGTGTCAG 58.473 55.000 12.58 0.00 0.00 3.51
80 81 1.140312 AGTGGTTCCATGGTGTCAGT 58.860 50.000 12.58 8.36 0.00 3.41
81 82 1.072331 AGTGGTTCCATGGTGTCAGTC 59.928 52.381 12.58 0.00 0.00 3.51
82 83 0.400213 TGGTTCCATGGTGTCAGTCC 59.600 55.000 12.58 5.76 0.00 3.85
83 84 0.693049 GGTTCCATGGTGTCAGTCCT 59.307 55.000 12.58 0.00 0.00 3.85
84 85 1.906574 GGTTCCATGGTGTCAGTCCTA 59.093 52.381 12.58 0.00 0.00 2.94
85 86 2.354805 GGTTCCATGGTGTCAGTCCTAC 60.355 54.545 12.58 0.00 0.00 3.18
86 87 2.567615 GTTCCATGGTGTCAGTCCTACT 59.432 50.000 12.58 0.00 0.00 2.57
87 88 3.750501 TCCATGGTGTCAGTCCTACTA 57.249 47.619 12.58 0.00 0.00 1.82
88 89 4.055710 TCCATGGTGTCAGTCCTACTAA 57.944 45.455 12.58 0.00 0.00 2.24
89 90 4.620723 TCCATGGTGTCAGTCCTACTAAT 58.379 43.478 12.58 0.00 0.00 1.73
90 91 4.405680 TCCATGGTGTCAGTCCTACTAATG 59.594 45.833 12.58 0.00 0.00 1.90
91 92 4.443457 CCATGGTGTCAGTCCTACTAATGG 60.443 50.000 2.57 0.00 0.00 3.16
92 93 2.500098 TGGTGTCAGTCCTACTAATGGC 59.500 50.000 0.00 0.00 0.00 4.40
93 94 2.158943 GGTGTCAGTCCTACTAATGGCC 60.159 54.545 0.00 0.00 0.00 5.36
94 95 2.766828 GTGTCAGTCCTACTAATGGCCT 59.233 50.000 3.32 0.00 0.00 5.19
95 96 2.766263 TGTCAGTCCTACTAATGGCCTG 59.234 50.000 3.32 0.00 0.00 4.85
96 97 1.762957 TCAGTCCTACTAATGGCCTGC 59.237 52.381 3.32 0.00 0.00 4.85
97 98 1.486310 CAGTCCTACTAATGGCCTGCA 59.514 52.381 3.32 0.00 0.00 4.41
98 99 2.105477 CAGTCCTACTAATGGCCTGCAT 59.895 50.000 3.32 0.00 0.00 3.96
99 100 2.105477 AGTCCTACTAATGGCCTGCATG 59.895 50.000 3.32 0.00 0.00 4.06
100 101 2.104792 GTCCTACTAATGGCCTGCATGA 59.895 50.000 3.32 0.00 0.00 3.07
101 102 2.981784 TCCTACTAATGGCCTGCATGAT 59.018 45.455 3.32 0.00 0.00 2.45
102 103 3.395607 TCCTACTAATGGCCTGCATGATT 59.604 43.478 3.32 0.00 0.00 2.57
103 104 4.597075 TCCTACTAATGGCCTGCATGATTA 59.403 41.667 3.32 0.00 0.00 1.75
104 105 5.251468 TCCTACTAATGGCCTGCATGATTAT 59.749 40.000 3.32 0.00 0.00 1.28
105 106 6.443527 TCCTACTAATGGCCTGCATGATTATA 59.556 38.462 3.32 0.00 0.00 0.98
106 107 6.765036 CCTACTAATGGCCTGCATGATTATAG 59.235 42.308 3.32 3.37 0.00 1.31
107 108 5.503927 ACTAATGGCCTGCATGATTATAGG 58.496 41.667 3.32 0.00 0.00 2.57
111 112 2.885135 CCTGCATGATTATAGGCCCA 57.115 50.000 0.00 0.00 0.00 5.36
112 113 2.440409 CCTGCATGATTATAGGCCCAC 58.560 52.381 0.00 0.00 0.00 4.61
113 114 2.224843 CCTGCATGATTATAGGCCCACA 60.225 50.000 0.00 0.00 0.00 4.17
114 115 3.562826 CCTGCATGATTATAGGCCCACAT 60.563 47.826 0.00 0.00 0.00 3.21
115 116 3.423749 TGCATGATTATAGGCCCACATG 58.576 45.455 0.00 7.97 38.33 3.21
116 117 3.074242 TGCATGATTATAGGCCCACATGA 59.926 43.478 18.51 2.21 37.77 3.07
117 118 3.693085 GCATGATTATAGGCCCACATGAG 59.307 47.826 18.51 0.00 37.77 2.90
118 119 4.267536 CATGATTATAGGCCCACATGAGG 58.732 47.826 0.00 0.00 37.77 3.86
119 120 3.597182 TGATTATAGGCCCACATGAGGA 58.403 45.455 11.19 0.00 0.00 3.71
120 121 3.584406 TGATTATAGGCCCACATGAGGAG 59.416 47.826 11.19 2.17 0.00 3.69
121 122 2.030027 TATAGGCCCACATGAGGAGG 57.970 55.000 11.19 0.86 0.00 4.30
122 123 0.769776 ATAGGCCCACATGAGGAGGG 60.770 60.000 11.19 11.24 45.68 4.30
123 124 2.914734 TAGGCCCACATGAGGAGGGG 62.915 65.000 11.19 8.52 43.04 4.79
124 125 3.813724 GCCCACATGAGGAGGGGG 61.814 72.222 11.19 6.82 43.04 5.40
125 126 2.286425 CCCACATGAGGAGGGGGT 60.286 66.667 11.19 0.00 38.98 4.95
126 127 2.683465 CCCACATGAGGAGGGGGTG 61.683 68.421 11.19 0.00 38.98 4.61
127 128 2.683465 CCACATGAGGAGGGGGTGG 61.683 68.421 2.50 0.00 42.57 4.61
128 129 2.286425 ACATGAGGAGGGGGTGGG 60.286 66.667 0.00 0.00 0.00 4.61
129 130 3.099170 CATGAGGAGGGGGTGGGG 61.099 72.222 0.00 0.00 0.00 4.96
130 131 4.455137 ATGAGGAGGGGGTGGGGG 62.455 72.222 0.00 0.00 0.00 5.40
138 139 4.802505 GGGGTGGGGGCATGCATT 62.803 66.667 21.36 0.00 0.00 3.56
139 140 2.688299 GGGTGGGGGCATGCATTT 60.688 61.111 21.36 0.00 0.00 2.32
140 141 2.300197 GGGTGGGGGCATGCATTTT 61.300 57.895 21.36 0.00 0.00 1.82
141 142 1.221566 GGTGGGGGCATGCATTTTC 59.778 57.895 21.36 6.46 0.00 2.29
142 143 1.551908 GGTGGGGGCATGCATTTTCA 61.552 55.000 21.36 7.16 0.00 2.69
143 144 0.542805 GTGGGGGCATGCATTTTCAT 59.457 50.000 21.36 0.00 0.00 2.57
144 145 1.761784 GTGGGGGCATGCATTTTCATA 59.238 47.619 21.36 0.00 0.00 2.15
145 146 2.369532 GTGGGGGCATGCATTTTCATAT 59.630 45.455 21.36 0.00 0.00 1.78
146 147 3.577848 GTGGGGGCATGCATTTTCATATA 59.422 43.478 21.36 0.00 0.00 0.86
147 148 4.223477 GTGGGGGCATGCATTTTCATATAT 59.777 41.667 21.36 0.00 0.00 0.86
148 149 5.421693 GTGGGGGCATGCATTTTCATATATA 59.578 40.000 21.36 0.00 0.00 0.86
149 150 6.098695 GTGGGGGCATGCATTTTCATATATAT 59.901 38.462 21.36 0.00 0.00 0.86
150 151 7.287466 GTGGGGGCATGCATTTTCATATATATA 59.713 37.037 21.36 0.00 0.00 0.86
151 152 7.506599 TGGGGGCATGCATTTTCATATATATAG 59.493 37.037 21.36 0.00 0.00 1.31
152 153 7.506938 GGGGGCATGCATTTTCATATATATAGT 59.493 37.037 21.36 0.00 0.00 2.12
153 154 8.355169 GGGGCATGCATTTTCATATATATAGTG 58.645 37.037 21.36 0.00 0.00 2.74
154 155 9.123902 GGGCATGCATTTTCATATATATAGTGA 57.876 33.333 21.36 0.77 0.00 3.41
163 164 9.502091 TTTTCATATATATAGTGAGTTGTGGCC 57.498 33.333 0.00 0.00 0.00 5.36
164 165 7.182817 TCATATATATAGTGAGTTGTGGCCC 57.817 40.000 0.00 0.00 0.00 5.80
165 166 2.910688 ATATAGTGAGTTGTGGCCCG 57.089 50.000 0.00 0.00 0.00 6.13
166 167 1.855295 TATAGTGAGTTGTGGCCCGA 58.145 50.000 0.00 0.00 0.00 5.14
167 168 0.249398 ATAGTGAGTTGTGGCCCGAC 59.751 55.000 0.00 1.39 0.00 4.79
168 169 1.823169 TAGTGAGTTGTGGCCCGACC 61.823 60.000 0.00 0.00 39.84 4.79
178 179 2.357760 GCCCGACCAGTTTGCGTA 60.358 61.111 0.00 0.00 0.00 4.42
179 180 2.674084 GCCCGACCAGTTTGCGTAC 61.674 63.158 0.00 0.00 0.00 3.67
180 181 1.301087 CCCGACCAGTTTGCGTACA 60.301 57.895 0.00 0.00 0.00 2.90
181 182 1.289109 CCCGACCAGTTTGCGTACAG 61.289 60.000 0.00 0.00 0.00 2.74
182 183 0.599204 CCGACCAGTTTGCGTACAGT 60.599 55.000 0.00 0.00 0.00 3.55
183 184 1.336148 CCGACCAGTTTGCGTACAGTA 60.336 52.381 0.00 0.00 0.00 2.74
184 185 2.396601 CGACCAGTTTGCGTACAGTAA 58.603 47.619 0.00 0.00 0.00 2.24
185 186 2.796031 CGACCAGTTTGCGTACAGTAAA 59.204 45.455 0.00 0.00 32.02 2.01
186 187 3.245754 CGACCAGTTTGCGTACAGTAAAA 59.754 43.478 0.00 0.00 36.24 1.52
187 188 4.260294 CGACCAGTTTGCGTACAGTAAAAA 60.260 41.667 0.00 0.00 36.24 1.94
188 189 4.912214 ACCAGTTTGCGTACAGTAAAAAC 58.088 39.130 0.00 6.65 36.24 2.43
189 190 4.201940 ACCAGTTTGCGTACAGTAAAAACC 60.202 41.667 9.58 0.00 36.24 3.27
190 191 4.201930 CCAGTTTGCGTACAGTAAAAACCA 60.202 41.667 9.58 0.00 36.24 3.67
191 192 5.333513 CAGTTTGCGTACAGTAAAAACCAA 58.666 37.500 9.58 0.00 36.24 3.67
192 193 5.228427 CAGTTTGCGTACAGTAAAAACCAAC 59.772 40.000 9.58 0.00 36.24 3.77
193 194 5.124297 AGTTTGCGTACAGTAAAAACCAACT 59.876 36.000 9.58 0.00 36.24 3.16
194 195 6.315891 AGTTTGCGTACAGTAAAAACCAACTA 59.684 34.615 9.58 0.00 36.24 2.24
195 196 6.674694 TTGCGTACAGTAAAAACCAACTAA 57.325 33.333 0.00 0.00 0.00 2.24
196 197 6.864360 TGCGTACAGTAAAAACCAACTAAT 57.136 33.333 0.00 0.00 0.00 1.73
197 198 7.959689 TGCGTACAGTAAAAACCAACTAATA 57.040 32.000 0.00 0.00 0.00 0.98
198 199 8.375608 TGCGTACAGTAAAAACCAACTAATAA 57.624 30.769 0.00 0.00 0.00 1.40
199 200 8.834465 TGCGTACAGTAAAAACCAACTAATAAA 58.166 29.630 0.00 0.00 0.00 1.40
200 201 9.321590 GCGTACAGTAAAAACCAACTAATAAAG 57.678 33.333 0.00 0.00 0.00 1.85
246 247 9.337396 AGAAGCAAATAAAAACTTAAAAAGGGG 57.663 29.630 0.00 0.00 0.00 4.79
247 248 9.332502 GAAGCAAATAAAAACTTAAAAAGGGGA 57.667 29.630 0.00 0.00 0.00 4.81
248 249 9.688091 AAGCAAATAAAAACTTAAAAAGGGGAA 57.312 25.926 0.00 0.00 0.00 3.97
249 250 9.688091 AGCAAATAAAAACTTAAAAAGGGGAAA 57.312 25.926 0.00 0.00 0.00 3.13
308 309 4.393062 AGACCAATAGCAAATCAACTGACG 59.607 41.667 0.00 0.00 0.00 4.35
330 331 4.609708 CGCAAATACGTGGTCAGTAAAAAC 59.390 41.667 0.00 0.00 0.00 2.43
347 358 0.381801 AACCAGCTCACAAAACAGCG 59.618 50.000 0.00 0.00 40.84 5.18
349 360 1.723542 CAGCTCACAAAACAGCGCG 60.724 57.895 0.00 0.00 40.84 6.86
360 371 2.774439 AACAGCGCGTGAAAGAAAAT 57.226 40.000 8.43 0.00 0.00 1.82
363 374 1.971962 CAGCGCGTGAAAGAAAATCAC 59.028 47.619 8.43 0.00 42.94 3.06
379 390 6.373774 AGAAAATCACGAATCTCAAAGCAGAT 59.626 34.615 0.00 0.00 34.34 2.90
424 436 7.740805 ACTAACCCAAAATTAATTTTCAGGCA 58.259 30.769 25.68 17.92 37.86 4.75
429 441 8.214364 ACCCAAAATTAATTTTCAGGCAACTTA 58.786 29.630 25.68 0.00 41.02 2.24
478 491 4.320494 CCCAAAACAATGTCTTCCTTCTCG 60.320 45.833 0.00 0.00 0.00 4.04
526 539 1.219664 CGTTAGGTTCCATGGCCGA 59.780 57.895 6.96 0.00 0.00 5.54
549 562 3.755378 GGTGTACACCGATCGATACCTAT 59.245 47.826 28.55 0.00 42.29 2.57
575 588 2.787035 TGTTTCCCAAGGGTAGTTTCCT 59.213 45.455 4.80 0.00 36.47 3.36
590 603 4.518249 AGTTTCCTTAGCTGTCCTATTGC 58.482 43.478 0.00 0.00 0.00 3.56
592 605 1.202533 TCCTTAGCTGTCCTATTGCGC 60.203 52.381 0.00 0.00 0.00 6.09
670 684 4.500127 TCATCTGATTCTCGCGGTTTAAA 58.500 39.130 6.13 0.00 0.00 1.52
753 767 9.393512 ACTAGGAGTAGTACTGTACTTTATGTG 57.606 37.037 24.09 12.35 37.76 3.21
754 768 7.098074 AGGAGTAGTACTGTACTTTATGTGC 57.902 40.000 24.09 10.70 40.14 4.57
755 769 6.662234 AGGAGTAGTACTGTACTTTATGTGCA 59.338 38.462 24.09 2.48 40.14 4.57
756 770 7.177921 AGGAGTAGTACTGTACTTTATGTGCAA 59.822 37.037 24.09 1.77 40.60 4.08
757 771 7.488471 GGAGTAGTACTGTACTTTATGTGCAAG 59.512 40.741 24.09 0.00 40.60 4.01
758 772 8.118976 AGTAGTACTGTACTTTATGTGCAAGA 57.881 34.615 24.09 0.55 40.60 3.02
759 773 8.244802 AGTAGTACTGTACTTTATGTGCAAGAG 58.755 37.037 24.09 0.00 40.60 2.85
760 774 6.994221 AGTACTGTACTTTATGTGCAAGAGT 58.006 36.000 14.53 0.00 40.60 3.24
761 775 6.868864 AGTACTGTACTTTATGTGCAAGAGTG 59.131 38.462 14.53 0.00 40.60 3.51
762 776 8.477604 AGTACTGTACTTTATGTGCAAGAGTGC 61.478 40.741 14.53 0.00 43.33 4.40
773 787 1.972872 CAAGAGTGCAAGAGGTTGGT 58.027 50.000 0.00 0.00 33.87 3.67
774 788 2.301346 CAAGAGTGCAAGAGGTTGGTT 58.699 47.619 0.00 0.00 33.87 3.67
775 789 1.972872 AGAGTGCAAGAGGTTGGTTG 58.027 50.000 0.00 0.00 33.87 3.77
776 790 0.954452 GAGTGCAAGAGGTTGGTTGG 59.046 55.000 0.00 0.00 33.87 3.77
777 791 0.258774 AGTGCAAGAGGTTGGTTGGT 59.741 50.000 0.00 0.00 33.87 3.67
778 792 0.385390 GTGCAAGAGGTTGGTTGGTG 59.615 55.000 0.00 0.00 33.87 4.17
779 793 1.363807 GCAAGAGGTTGGTTGGTGC 59.636 57.895 0.00 0.00 33.87 5.01
780 794 1.391157 GCAAGAGGTTGGTTGGTGCA 61.391 55.000 0.00 0.00 33.87 4.57
781 795 0.385390 CAAGAGGTTGGTTGGTGCAC 59.615 55.000 8.80 8.80 0.00 4.57
782 796 0.258774 AAGAGGTTGGTTGGTGCACT 59.741 50.000 17.98 0.00 0.00 4.40
783 797 0.466189 AGAGGTTGGTTGGTGCACTG 60.466 55.000 17.98 0.00 0.00 3.66
784 798 1.455383 GAGGTTGGTTGGTGCACTGG 61.455 60.000 17.98 0.00 0.00 4.00
785 799 1.756561 GGTTGGTTGGTGCACTGGT 60.757 57.895 17.98 0.00 0.00 4.00
786 800 1.733526 GTTGGTTGGTGCACTGGTC 59.266 57.895 17.98 0.00 0.00 4.02
787 801 1.821759 TTGGTTGGTGCACTGGTCG 60.822 57.895 17.98 0.00 0.00 4.79
788 802 2.203153 GGTTGGTGCACTGGTCGT 60.203 61.111 17.98 0.00 0.00 4.34
789 803 2.251642 GGTTGGTGCACTGGTCGTC 61.252 63.158 17.98 0.00 0.00 4.20
790 804 2.279851 TTGGTGCACTGGTCGTCG 60.280 61.111 17.98 0.00 0.00 5.12
791 805 3.083848 TTGGTGCACTGGTCGTCGT 62.084 57.895 17.98 0.00 0.00 4.34
853 867 5.011840 GGGAGTACTAGGAATAACACCATCC 59.988 48.000 0.00 0.00 0.00 3.51
868 882 1.547223 CCATCCTCCAATCATCAGCCC 60.547 57.143 0.00 0.00 0.00 5.19
926 958 3.606687 CCGGTACTATTTGCCTTCAAGT 58.393 45.455 0.00 0.00 33.12 3.16
955 1332 0.250727 ACCGCCACACAACAGCTATT 60.251 50.000 0.00 0.00 0.00 1.73
1528 2339 2.507407 TTTCGGGAATAGGCAAAGCT 57.493 45.000 0.00 0.00 0.00 3.74
1529 2340 2.507407 TTCGGGAATAGGCAAAGCTT 57.493 45.000 0.00 0.00 0.00 3.74
1530 2341 1.750193 TCGGGAATAGGCAAAGCTTG 58.250 50.000 0.00 0.00 0.00 4.01
1531 2342 1.004277 TCGGGAATAGGCAAAGCTTGT 59.996 47.619 0.00 0.00 0.00 3.16
1533 2344 2.171003 GGGAATAGGCAAAGCTTGTGT 58.829 47.619 0.00 0.00 0.00 3.72
1535 2346 3.954258 GGGAATAGGCAAAGCTTGTGTAT 59.046 43.478 0.00 0.00 0.00 2.29
1536 2347 4.036852 GGGAATAGGCAAAGCTTGTGTATC 59.963 45.833 0.00 0.00 0.00 2.24
1537 2348 4.640201 GGAATAGGCAAAGCTTGTGTATCA 59.360 41.667 0.00 0.00 0.00 2.15
1539 2350 6.183360 GGAATAGGCAAAGCTTGTGTATCATT 60.183 38.462 0.00 0.00 0.00 2.57
1540 2351 4.708726 AGGCAAAGCTTGTGTATCATTC 57.291 40.909 0.00 0.00 0.00 2.67
1541 2352 3.445096 AGGCAAAGCTTGTGTATCATTCC 59.555 43.478 0.00 0.00 0.00 3.01
1542 2353 3.193267 GGCAAAGCTTGTGTATCATTCCA 59.807 43.478 0.00 0.00 0.00 3.53
1544 2355 5.039333 GCAAAGCTTGTGTATCATTCCATC 58.961 41.667 0.00 0.00 0.00 3.51
1547 2358 6.446781 AAGCTTGTGTATCATTCCATCTTG 57.553 37.500 0.00 0.00 0.00 3.02
1548 2359 4.885907 AGCTTGTGTATCATTCCATCTTGG 59.114 41.667 0.00 0.00 39.43 3.61
1549 2360 4.498682 GCTTGTGTATCATTCCATCTTGGC 60.499 45.833 0.00 0.00 37.47 4.52
1550 2361 4.233632 TGTGTATCATTCCATCTTGGCA 57.766 40.909 0.00 0.00 37.47 4.92
1551 2362 4.795469 TGTGTATCATTCCATCTTGGCAT 58.205 39.130 0.00 0.00 37.47 4.40
1626 3254 4.704057 ACAGAGGATTGCCATTTTTCTCTC 59.296 41.667 0.00 0.00 36.29 3.20
1651 3279 4.774726 AGAGAAGAAGCACTGGACTGAATA 59.225 41.667 0.00 0.00 0.00 1.75
1658 3286 7.624549 AGAAGCACTGGACTGAATAATTTCTA 58.375 34.615 0.00 0.00 32.78 2.10
1685 3542 2.668550 GCAGGCTTCCCGAAACGT 60.669 61.111 0.00 0.00 35.76 3.99
1817 3677 3.901797 GAACACCCAGGCGACCAGG 62.902 68.421 0.00 0.00 0.00 4.45
1885 3745 1.738099 CGTTCGAGCTGTTCCCCAG 60.738 63.158 0.00 0.00 44.53 4.45
1995 3855 3.800685 CTTGACGCCCACACCGACA 62.801 63.158 0.00 0.00 0.00 4.35
1996 3856 3.387225 TTGACGCCCACACCGACAA 62.387 57.895 0.00 0.00 37.84 3.18
1997 3857 2.589442 GACGCCCACACCGACAAA 60.589 61.111 0.00 0.00 0.00 2.83
2102 3962 3.047877 CGGCCGTTCTTGTGGGTC 61.048 66.667 19.50 0.00 0.00 4.46
2124 3984 3.998672 GCCCGGACTTCACGACCA 61.999 66.667 0.73 0.00 0.00 4.02
2156 4016 1.038280 AGGAGTGGTTCGACGAGTTT 58.962 50.000 0.00 0.00 0.00 2.66
2198 4064 1.202580 GGCAGAGGCATGATCGTTAGT 60.203 52.381 0.00 0.00 43.71 2.24
2252 4125 6.992664 ATCATCAACTTACCTAGCTCTCAT 57.007 37.500 0.00 0.00 0.00 2.90
2301 4174 3.623060 CCTCAGTGCATATTGTAAGCGTT 59.377 43.478 0.00 0.00 0.00 4.84
2453 4347 1.666872 GTGCTGGCCGTACTTCGTT 60.667 57.895 0.00 0.00 37.94 3.85
2533 4427 2.885644 CGGTGAAGATGGCGTCGG 60.886 66.667 0.13 0.00 0.00 4.79
2537 4431 2.279810 TGAAGATGGCGTCGGGACA 61.280 57.895 0.13 0.00 38.71 4.02
2734 5194 1.065551 TCGTCATGTGATGGTCGCTAG 59.934 52.381 2.63 0.00 0.00 3.42
2735 5195 1.212616 GTCATGTGATGGTCGCTAGC 58.787 55.000 4.06 4.06 0.00 3.42
2736 5196 1.114627 TCATGTGATGGTCGCTAGCT 58.885 50.000 13.93 0.00 0.00 3.32
2737 5197 2.034685 GTCATGTGATGGTCGCTAGCTA 59.965 50.000 13.93 0.00 0.00 3.32
2739 5199 0.380733 TGTGATGGTCGCTAGCTACG 59.619 55.000 13.93 8.77 0.00 3.51
2740 5200 0.661552 GTGATGGTCGCTAGCTACGA 59.338 55.000 13.93 9.99 37.17 3.43
2744 5204 2.203800 TGGTCGCTAGCTACGATTTG 57.796 50.000 13.93 0.00 42.26 2.32
2745 5205 1.475280 TGGTCGCTAGCTACGATTTGT 59.525 47.619 13.93 0.00 42.26 2.83
2746 5206 2.094390 TGGTCGCTAGCTACGATTTGTT 60.094 45.455 13.93 0.00 42.26 2.83
2747 5207 3.129113 TGGTCGCTAGCTACGATTTGTTA 59.871 43.478 13.93 3.66 42.26 2.41
2790 5250 4.465305 GTGGGAAGCTAGTGTTAAGGAGTA 59.535 45.833 0.00 0.00 0.00 2.59
2827 5287 5.780793 AGTTGTGTAGACAAATACTCCCTCT 59.219 40.000 7.06 0.00 43.77 3.69
2832 5292 4.067944 AGACAAATACTCCCTCTGTCCT 57.932 45.455 0.00 0.00 37.68 3.85
2846 5306 7.709601 TCCCTCTGTCCTATAATATAAGAGCA 58.290 38.462 2.63 0.00 0.00 4.26
2959 5709 6.483307 TGGACTGCATAGCTACATTTTGTATC 59.517 38.462 0.00 0.00 31.66 2.24
2960 5710 6.346919 GGACTGCATAGCTACATTTTGTATCG 60.347 42.308 0.00 0.00 31.66 2.92
2961 5711 6.280643 ACTGCATAGCTACATTTTGTATCGA 58.719 36.000 0.00 0.00 31.66 3.59
2963 5713 7.442364 ACTGCATAGCTACATTTTGTATCGATT 59.558 33.333 1.71 0.00 31.66 3.34
2965 5715 8.620416 TGCATAGCTACATTTTGTATCGATTTT 58.380 29.630 1.71 0.00 31.66 1.82
2966 5716 8.895845 GCATAGCTACATTTTGTATCGATTTTG 58.104 33.333 1.71 0.00 31.66 2.44
2983 6120 6.051717 CGATTTTGAGGACCTGATGTTCTAT 58.948 40.000 0.00 0.00 30.74 1.98
3059 6212 2.623878 TGTTTTCGAACTGCCTACCA 57.376 45.000 0.00 0.00 0.00 3.25
3062 6215 4.643463 TGTTTTCGAACTGCCTACCAATA 58.357 39.130 0.00 0.00 0.00 1.90
3537 6690 3.741476 GCTTTGCTCCGCCCACTG 61.741 66.667 0.00 0.00 0.00 3.66
3538 6691 2.281761 CTTTGCTCCGCCCACTGT 60.282 61.111 0.00 0.00 0.00 3.55
3539 6692 2.594303 TTTGCTCCGCCCACTGTG 60.594 61.111 0.00 0.00 0.00 3.66
3540 6693 4.641645 TTGCTCCGCCCACTGTGG 62.642 66.667 20.01 20.01 46.66 4.17
3549 6702 2.185350 CCACTGTGGGCTCGCTAG 59.815 66.667 19.23 0.00 32.67 3.42
3550 6703 2.650116 CCACTGTGGGCTCGCTAGT 61.650 63.158 19.23 0.00 32.67 2.57
3551 6704 1.153745 CACTGTGGGCTCGCTAGTC 60.154 63.158 0.00 0.00 0.00 2.59
3556 6709 3.228017 GGGCTCGCTAGTCCCCTC 61.228 72.222 0.00 0.00 42.14 4.30
3557 6710 3.228017 GGCTCGCTAGTCCCCTCC 61.228 72.222 0.00 0.00 0.00 4.30
3558 6711 3.228017 GCTCGCTAGTCCCCTCCC 61.228 72.222 0.00 0.00 0.00 4.30
3559 6712 2.604152 CTCGCTAGTCCCCTCCCT 59.396 66.667 0.00 0.00 0.00 4.20
3560 6713 1.075896 CTCGCTAGTCCCCTCCCTT 60.076 63.158 0.00 0.00 0.00 3.95
3561 6714 1.381327 TCGCTAGTCCCCTCCCTTG 60.381 63.158 0.00 0.00 0.00 3.61
3562 6715 2.911928 GCTAGTCCCCTCCCTTGC 59.088 66.667 0.00 0.00 0.00 4.01
3563 6716 2.747443 GCTAGTCCCCTCCCTTGCC 61.747 68.421 0.00 0.00 0.00 4.52
3564 6717 1.003573 CTAGTCCCCTCCCTTGCCT 59.996 63.158 0.00 0.00 0.00 4.75
3565 6718 1.003051 TAGTCCCCTCCCTTGCCTC 59.997 63.158 0.00 0.00 0.00 4.70
3566 6719 2.547123 TAGTCCCCTCCCTTGCCTCC 62.547 65.000 0.00 0.00 0.00 4.30
3567 6720 3.626596 TCCCCTCCCTTGCCTCCT 61.627 66.667 0.00 0.00 0.00 3.69
3568 6721 3.093172 CCCCTCCCTTGCCTCCTC 61.093 72.222 0.00 0.00 0.00 3.71
3569 6722 2.041928 CCCTCCCTTGCCTCCTCT 59.958 66.667 0.00 0.00 0.00 3.69
3570 6723 2.069430 CCCTCCCTTGCCTCCTCTC 61.069 68.421 0.00 0.00 0.00 3.20
3571 6724 1.002792 CCTCCCTTGCCTCCTCTCT 59.997 63.158 0.00 0.00 0.00 3.10
3572 6725 1.048160 CCTCCCTTGCCTCCTCTCTC 61.048 65.000 0.00 0.00 0.00 3.20
3573 6726 1.002274 TCCCTTGCCTCCTCTCTCC 59.998 63.158 0.00 0.00 0.00 3.71
3574 6727 2.069430 CCCTTGCCTCCTCTCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
3575 6728 2.069430 CCTTGCCTCCTCTCTCCCC 61.069 68.421 0.00 0.00 0.00 4.81
3576 6729 1.002792 CTTGCCTCCTCTCTCCCCT 59.997 63.158 0.00 0.00 0.00 4.79
3577 6730 1.002274 TTGCCTCCTCTCTCCCCTC 59.998 63.158 0.00 0.00 0.00 4.30
3578 6731 2.520741 GCCTCCTCTCTCCCCTCG 60.521 72.222 0.00 0.00 0.00 4.63
3579 6732 2.520741 CCTCCTCTCTCCCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
3580 6733 2.277072 CTCCTCTCTCCCCTCGCA 59.723 66.667 0.00 0.00 0.00 5.10
3581 6734 1.152567 CTCCTCTCTCCCCTCGCAT 60.153 63.158 0.00 0.00 0.00 4.73
3582 6735 1.456518 TCCTCTCTCCCCTCGCATG 60.457 63.158 0.00 0.00 0.00 4.06
3583 6736 2.506061 CCTCTCTCCCCTCGCATGG 61.506 68.421 0.00 0.00 0.00 3.66
3584 6737 2.444706 TCTCTCCCCTCGCATGGG 60.445 66.667 2.76 2.76 46.68 4.00
3585 6738 4.247380 CTCTCCCCTCGCATGGGC 62.247 72.222 4.59 0.00 45.78 5.36
3602 6755 3.622756 CGCCTAGCTCGCATCTTG 58.377 61.111 6.53 0.00 0.00 3.02
3603 6756 1.953138 CGCCTAGCTCGCATCTTGG 60.953 63.158 6.53 0.00 0.00 3.61
3604 6757 2.250237 GCCTAGCTCGCATCTTGGC 61.250 63.158 0.00 6.58 43.05 4.52
3623 6776 3.744155 CCCCCTCCCTTTGGCTCC 61.744 72.222 0.00 0.00 0.00 4.70
3628 6781 1.631071 CCTCCCTTTGGCTCCTCCTC 61.631 65.000 0.00 0.00 35.26 3.71
3631 6784 0.405585 CCCTTTGGCTCCTCCTCAAA 59.594 55.000 0.00 0.00 35.26 2.69
3632 6785 1.539157 CCTTTGGCTCCTCCTCAAAC 58.461 55.000 0.00 0.00 35.26 2.93
3633 6786 1.539157 CTTTGGCTCCTCCTCAAACC 58.461 55.000 0.00 0.00 35.26 3.27
3635 6788 0.693049 TTGGCTCCTCCTCAAACCTC 59.307 55.000 0.00 0.00 35.26 3.85
3636 6789 1.201429 TGGCTCCTCCTCAAACCTCC 61.201 60.000 0.00 0.00 35.26 4.30
3637 6790 0.912006 GGCTCCTCCTCAAACCTCCT 60.912 60.000 0.00 0.00 0.00 3.69
3640 6793 1.280421 CTCCTCCTCAAACCTCCTTGG 59.720 57.143 0.00 0.00 42.93 3.61
3641 6794 0.329596 CCTCCTCAAACCTCCTTGGG 59.670 60.000 0.00 0.00 41.11 4.12
3642 6795 0.322906 CTCCTCAAACCTCCTTGGGC 60.323 60.000 0.00 0.00 41.11 5.36
3645 6798 2.282462 CAAACCTCCTTGGGCGCT 60.282 61.111 7.64 0.00 41.11 5.92
3647 6800 0.608035 CAAACCTCCTTGGGCGCTAA 60.608 55.000 7.64 2.02 41.11 3.09
3648 6801 0.111639 AAACCTCCTTGGGCGCTAAA 59.888 50.000 7.64 0.62 41.11 1.85
3649 6802 0.608308 AACCTCCTTGGGCGCTAAAC 60.608 55.000 7.64 0.00 41.11 2.01
3651 6804 1.305930 CCTCCTTGGGCGCTAAACAC 61.306 60.000 7.64 0.00 0.00 3.32
3654 6807 1.348366 TCCTTGGGCGCTAAACACTAA 59.652 47.619 7.64 0.00 0.00 2.24
3655 6808 2.156098 CCTTGGGCGCTAAACACTAAA 58.844 47.619 7.64 0.00 0.00 1.85
3656 6809 2.554893 CCTTGGGCGCTAAACACTAAAA 59.445 45.455 7.64 0.00 0.00 1.52
3657 6810 3.561503 CTTGGGCGCTAAACACTAAAAC 58.438 45.455 7.64 0.00 0.00 2.43
3658 6811 2.853705 TGGGCGCTAAACACTAAAACT 58.146 42.857 7.64 0.00 0.00 2.66
3659 6812 4.005487 TGGGCGCTAAACACTAAAACTA 57.995 40.909 7.64 0.00 0.00 2.24
3660 6813 4.387598 TGGGCGCTAAACACTAAAACTAA 58.612 39.130 7.64 0.00 0.00 2.24
3661 6814 4.820716 TGGGCGCTAAACACTAAAACTAAA 59.179 37.500 7.64 0.00 0.00 1.85
3662 6815 5.298777 TGGGCGCTAAACACTAAAACTAAAA 59.701 36.000 7.64 0.00 0.00 1.52
3663 6816 5.626543 GGGCGCTAAACACTAAAACTAAAAC 59.373 40.000 7.64 0.00 0.00 2.43
3665 6818 5.626543 GCGCTAAACACTAAAACTAAAACCC 59.373 40.000 0.00 0.00 0.00 4.11
3668 6821 6.852853 GCTAAACACTAAAACTAAAACCCGTC 59.147 38.462 0.00 0.00 0.00 4.79
3669 6822 6.756299 AAACACTAAAACTAAAACCCGTCA 57.244 33.333 0.00 0.00 0.00 4.35
3670 6823 6.756299 AACACTAAAACTAAAACCCGTCAA 57.244 33.333 0.00 0.00 0.00 3.18
3672 6825 7.155655 ACACTAAAACTAAAACCCGTCAAAA 57.844 32.000 0.00 0.00 0.00 2.44
3673 6826 7.600960 ACACTAAAACTAAAACCCGTCAAAAA 58.399 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.328099 GCACCTTTGGCCACGAGAG 61.328 63.158 3.88 0.68 0.00 3.20
3 4 2.281484 GCACCTTTGGCCACGAGA 60.281 61.111 3.88 0.00 0.00 4.04
10 11 1.623311 AGGTATTTTGGCACCTTTGGC 59.377 47.619 0.00 0.00 42.68 4.52
11 12 3.056607 CAGAGGTATTTTGGCACCTTTGG 60.057 47.826 4.29 0.00 45.32 3.28
13 14 3.826729 GACAGAGGTATTTTGGCACCTTT 59.173 43.478 0.00 0.00 45.32 3.11
14 15 3.074538 AGACAGAGGTATTTTGGCACCTT 59.925 43.478 0.00 0.00 45.32 3.50
16 17 3.073274 AGACAGAGGTATTTTGGCACC 57.927 47.619 0.00 0.00 34.86 5.01
18 19 3.369052 CGGTAGACAGAGGTATTTTGGCA 60.369 47.826 0.00 0.00 0.00 4.92
19 20 3.195661 CGGTAGACAGAGGTATTTTGGC 58.804 50.000 0.00 0.00 0.00 4.52
20 21 3.195661 GCGGTAGACAGAGGTATTTTGG 58.804 50.000 0.00 0.00 0.00 3.28
21 22 3.195661 GGCGGTAGACAGAGGTATTTTG 58.804 50.000 0.00 0.00 0.00 2.44
22 23 2.835764 TGGCGGTAGACAGAGGTATTTT 59.164 45.455 0.00 0.00 0.00 1.82
23 24 2.167900 GTGGCGGTAGACAGAGGTATTT 59.832 50.000 0.00 0.00 34.99 1.40
24 25 1.755380 GTGGCGGTAGACAGAGGTATT 59.245 52.381 0.00 0.00 34.99 1.89
25 26 1.063867 AGTGGCGGTAGACAGAGGTAT 60.064 52.381 0.00 0.00 34.99 2.73
26 27 0.330604 AGTGGCGGTAGACAGAGGTA 59.669 55.000 0.00 0.00 34.99 3.08
27 28 0.542232 AAGTGGCGGTAGACAGAGGT 60.542 55.000 0.00 0.00 34.99 3.85
28 29 0.173708 GAAGTGGCGGTAGACAGAGG 59.826 60.000 0.00 0.00 34.99 3.69
29 30 0.888619 TGAAGTGGCGGTAGACAGAG 59.111 55.000 0.00 0.00 34.99 3.35
30 31 1.334160 TTGAAGTGGCGGTAGACAGA 58.666 50.000 0.00 0.00 34.99 3.41
31 32 1.798813 GTTTGAAGTGGCGGTAGACAG 59.201 52.381 0.00 0.00 34.99 3.51
32 33 1.139256 TGTTTGAAGTGGCGGTAGACA 59.861 47.619 0.00 0.00 0.00 3.41
33 34 1.873698 TGTTTGAAGTGGCGGTAGAC 58.126 50.000 0.00 0.00 0.00 2.59
34 35 2.215196 GTTGTTTGAAGTGGCGGTAGA 58.785 47.619 0.00 0.00 0.00 2.59
35 36 1.265905 GGTTGTTTGAAGTGGCGGTAG 59.734 52.381 0.00 0.00 0.00 3.18
36 37 1.134037 AGGTTGTTTGAAGTGGCGGTA 60.134 47.619 0.00 0.00 0.00 4.02
37 38 0.395173 AGGTTGTTTGAAGTGGCGGT 60.395 50.000 0.00 0.00 0.00 5.68
38 39 0.310854 GAGGTTGTTTGAAGTGGCGG 59.689 55.000 0.00 0.00 0.00 6.13
39 40 1.002468 CAGAGGTTGTTTGAAGTGGCG 60.002 52.381 0.00 0.00 0.00 5.69
40 41 1.269257 GCAGAGGTTGTTTGAAGTGGC 60.269 52.381 0.00 0.00 0.00 5.01
41 42 2.023673 TGCAGAGGTTGTTTGAAGTGG 58.976 47.619 0.00 0.00 0.00 4.00
42 43 2.684881 ACTGCAGAGGTTGTTTGAAGTG 59.315 45.455 23.35 0.00 0.00 3.16
43 44 2.684881 CACTGCAGAGGTTGTTTGAAGT 59.315 45.455 23.35 0.00 0.00 3.01
44 45 2.033801 CCACTGCAGAGGTTGTTTGAAG 59.966 50.000 23.35 0.00 0.00 3.02
45 46 2.023673 CCACTGCAGAGGTTGTTTGAA 58.976 47.619 23.35 0.00 0.00 2.69
46 47 1.064758 ACCACTGCAGAGGTTGTTTGA 60.065 47.619 27.87 0.00 35.43 2.69
47 48 1.392589 ACCACTGCAGAGGTTGTTTG 58.607 50.000 27.87 9.67 35.43 2.93
48 49 2.024414 GAACCACTGCAGAGGTTGTTT 58.976 47.619 41.49 25.15 46.49 2.83
49 50 1.680338 GAACCACTGCAGAGGTTGTT 58.320 50.000 41.49 25.48 46.49 2.83
50 51 0.179018 GGAACCACTGCAGAGGTTGT 60.179 55.000 41.49 26.15 46.49 3.32
51 52 0.179020 TGGAACCACTGCAGAGGTTG 60.179 55.000 41.49 21.61 46.49 3.77
53 54 0.037303 CATGGAACCACTGCAGAGGT 59.963 55.000 27.87 27.87 40.79 3.85
54 55 0.679002 CCATGGAACCACTGCAGAGG 60.679 60.000 26.48 26.48 0.00 3.69
55 56 0.037303 ACCATGGAACCACTGCAGAG 59.963 55.000 23.35 13.32 0.00 3.35
56 57 0.250858 CACCATGGAACCACTGCAGA 60.251 55.000 23.35 0.00 0.00 4.26
57 58 0.538057 ACACCATGGAACCACTGCAG 60.538 55.000 21.47 13.48 0.00 4.41
58 59 0.537143 GACACCATGGAACCACTGCA 60.537 55.000 21.47 0.00 0.00 4.41
59 60 0.537143 TGACACCATGGAACCACTGC 60.537 55.000 21.47 2.29 0.00 4.40
60 61 1.202806 ACTGACACCATGGAACCACTG 60.203 52.381 21.47 7.57 0.00 3.66
61 62 1.072331 GACTGACACCATGGAACCACT 59.928 52.381 21.47 1.62 0.00 4.00
62 63 1.523758 GACTGACACCATGGAACCAC 58.476 55.000 21.47 5.54 0.00 4.16
63 64 0.400213 GGACTGACACCATGGAACCA 59.600 55.000 21.47 11.32 0.00 3.67
64 65 0.693049 AGGACTGACACCATGGAACC 59.307 55.000 21.47 10.12 0.00 3.62
65 66 2.567615 AGTAGGACTGACACCATGGAAC 59.432 50.000 21.47 9.58 0.00 3.62
66 67 2.902608 AGTAGGACTGACACCATGGAA 58.097 47.619 21.47 0.00 0.00 3.53
67 68 2.623418 AGTAGGACTGACACCATGGA 57.377 50.000 21.47 0.00 0.00 3.41
68 69 4.443457 CCATTAGTAGGACTGACACCATGG 60.443 50.000 11.19 11.19 0.00 3.66
69 70 4.697514 CCATTAGTAGGACTGACACCATG 58.302 47.826 0.00 0.00 0.00 3.66
70 71 3.134804 GCCATTAGTAGGACTGACACCAT 59.865 47.826 0.00 0.00 0.00 3.55
71 72 2.500098 GCCATTAGTAGGACTGACACCA 59.500 50.000 0.00 0.00 0.00 4.17
72 73 2.158943 GGCCATTAGTAGGACTGACACC 60.159 54.545 0.00 0.00 0.00 4.16
73 74 2.766828 AGGCCATTAGTAGGACTGACAC 59.233 50.000 5.01 0.00 44.84 3.67
74 75 3.116096 AGGCCATTAGTAGGACTGACA 57.884 47.619 5.01 0.00 44.84 3.58
79 80 2.104792 TCATGCAGGCCATTAGTAGGAC 59.895 50.000 5.01 0.00 29.71 3.85
80 81 2.407562 TCATGCAGGCCATTAGTAGGA 58.592 47.619 5.01 0.00 29.71 2.94
81 82 2.936919 TCATGCAGGCCATTAGTAGG 57.063 50.000 5.01 0.00 29.71 3.18
82 83 6.765036 CCTATAATCATGCAGGCCATTAGTAG 59.235 42.308 5.01 3.83 29.71 2.57
83 84 6.653020 CCTATAATCATGCAGGCCATTAGTA 58.347 40.000 5.01 0.00 29.71 1.82
84 85 5.503927 CCTATAATCATGCAGGCCATTAGT 58.496 41.667 5.01 0.00 29.71 2.24
85 86 4.337555 GCCTATAATCATGCAGGCCATTAG 59.662 45.833 5.01 0.00 46.47 1.73
86 87 4.272489 GCCTATAATCATGCAGGCCATTA 58.728 43.478 5.01 0.00 46.47 1.90
87 88 3.094572 GCCTATAATCATGCAGGCCATT 58.905 45.455 5.01 0.00 46.47 3.16
88 89 2.731572 GCCTATAATCATGCAGGCCAT 58.268 47.619 5.01 0.00 46.47 4.40
89 90 2.205022 GCCTATAATCATGCAGGCCA 57.795 50.000 5.01 0.00 46.47 5.36
92 93 2.224843 TGTGGGCCTATAATCATGCAGG 60.225 50.000 4.53 0.00 0.00 4.85
93 94 3.144657 TGTGGGCCTATAATCATGCAG 57.855 47.619 4.53 0.00 0.00 4.41
94 95 3.074242 TCATGTGGGCCTATAATCATGCA 59.926 43.478 4.53 0.00 34.56 3.96
95 96 3.689347 TCATGTGGGCCTATAATCATGC 58.311 45.455 4.53 0.00 34.56 4.06
96 97 4.019051 TCCTCATGTGGGCCTATAATCATG 60.019 45.833 13.71 6.91 35.47 3.07
97 98 4.178339 TCCTCATGTGGGCCTATAATCAT 58.822 43.478 13.71 0.00 0.00 2.45
98 99 3.584406 CTCCTCATGTGGGCCTATAATCA 59.416 47.826 13.71 0.00 0.00 2.57
99 100 3.054802 CCTCCTCATGTGGGCCTATAATC 60.055 52.174 13.71 0.00 0.00 1.75
100 101 2.915604 CCTCCTCATGTGGGCCTATAAT 59.084 50.000 13.71 0.00 0.00 1.28
101 102 2.338809 CCTCCTCATGTGGGCCTATAA 58.661 52.381 13.71 0.00 0.00 0.98
102 103 1.485019 CCCTCCTCATGTGGGCCTATA 60.485 57.143 13.71 0.00 40.76 1.31
103 104 0.769776 CCCTCCTCATGTGGGCCTAT 60.770 60.000 13.71 0.00 40.76 2.57
104 105 1.384502 CCCTCCTCATGTGGGCCTA 60.385 63.158 13.71 0.00 40.76 3.93
105 106 2.693864 CCCTCCTCATGTGGGCCT 60.694 66.667 13.71 0.00 40.76 5.19
106 107 3.813724 CCCCTCCTCATGTGGGCC 61.814 72.222 13.71 0.00 45.00 5.80
107 108 3.813724 CCCCCTCCTCATGTGGGC 61.814 72.222 13.71 0.00 45.00 5.36
108 109 2.286425 ACCCCCTCCTCATGTGGG 60.286 66.667 13.71 10.58 45.79 4.61
109 110 2.683465 CCACCCCCTCCTCATGTGG 61.683 68.421 7.52 7.52 40.39 4.17
110 111 2.683465 CCCACCCCCTCCTCATGTG 61.683 68.421 0.00 0.00 0.00 3.21
111 112 2.286425 CCCACCCCCTCCTCATGT 60.286 66.667 0.00 0.00 0.00 3.21
112 113 3.099170 CCCCACCCCCTCCTCATG 61.099 72.222 0.00 0.00 0.00 3.07
113 114 4.455137 CCCCCACCCCCTCCTCAT 62.455 72.222 0.00 0.00 0.00 2.90
121 122 4.802505 AATGCATGCCCCCACCCC 62.803 66.667 16.68 0.00 0.00 4.95
122 123 2.256072 GAAAATGCATGCCCCCACCC 62.256 60.000 16.68 0.00 0.00 4.61
123 124 1.221566 GAAAATGCATGCCCCCACC 59.778 57.895 16.68 0.00 0.00 4.61
124 125 0.542805 ATGAAAATGCATGCCCCCAC 59.457 50.000 16.68 4.83 0.00 4.61
125 126 2.171568 TATGAAAATGCATGCCCCCA 57.828 45.000 16.68 6.53 0.00 4.96
126 127 6.736110 ATATATATGAAAATGCATGCCCCC 57.264 37.500 16.68 0.44 0.00 5.40
127 128 8.355169 CACTATATATATGAAAATGCATGCCCC 58.645 37.037 16.68 0.06 0.00 5.80
128 129 9.123902 TCACTATATATATGAAAATGCATGCCC 57.876 33.333 16.68 0.00 0.00 5.36
137 138 9.502091 GGCCACAACTCACTATATATATGAAAA 57.498 33.333 5.44 0.00 0.00 2.29
138 139 8.100791 GGGCCACAACTCACTATATATATGAAA 58.899 37.037 4.39 0.00 0.00 2.69
139 140 7.578763 CGGGCCACAACTCACTATATATATGAA 60.579 40.741 4.39 0.00 0.00 2.57
140 141 6.127451 CGGGCCACAACTCACTATATATATGA 60.127 42.308 4.39 0.00 0.00 2.15
141 142 6.042777 CGGGCCACAACTCACTATATATATG 58.957 44.000 4.39 0.00 0.00 1.78
142 143 5.955959 TCGGGCCACAACTCACTATATATAT 59.044 40.000 4.39 0.00 0.00 0.86
143 144 5.184479 GTCGGGCCACAACTCACTATATATA 59.816 44.000 4.39 0.00 0.00 0.86
144 145 4.021368 GTCGGGCCACAACTCACTATATAT 60.021 45.833 4.39 0.00 0.00 0.86
145 146 3.319972 GTCGGGCCACAACTCACTATATA 59.680 47.826 4.39 0.00 0.00 0.86
146 147 2.102588 GTCGGGCCACAACTCACTATAT 59.897 50.000 4.39 0.00 0.00 0.86
147 148 1.479323 GTCGGGCCACAACTCACTATA 59.521 52.381 4.39 0.00 0.00 1.31
148 149 0.249398 GTCGGGCCACAACTCACTAT 59.751 55.000 4.39 0.00 0.00 2.12
149 150 1.669440 GTCGGGCCACAACTCACTA 59.331 57.895 4.39 0.00 0.00 2.74
150 151 2.426023 GTCGGGCCACAACTCACT 59.574 61.111 4.39 0.00 0.00 3.41
151 152 2.668550 GGTCGGGCCACAACTCAC 60.669 66.667 4.39 0.00 37.17 3.51
152 153 3.164977 TGGTCGGGCCACAACTCA 61.165 61.111 4.39 0.00 43.61 3.41
153 154 2.358737 CTGGTCGGGCCACAACTC 60.359 66.667 4.39 0.00 43.61 3.01
154 155 2.279037 AAACTGGTCGGGCCACAACT 62.279 55.000 4.39 0.00 43.61 3.16
155 156 1.826487 AAACTGGTCGGGCCACAAC 60.826 57.895 4.39 0.00 43.61 3.32
156 157 1.826054 CAAACTGGTCGGGCCACAA 60.826 57.895 4.39 0.00 43.61 3.33
157 158 2.203280 CAAACTGGTCGGGCCACA 60.203 61.111 4.39 0.00 43.61 4.17
158 159 3.670377 GCAAACTGGTCGGGCCAC 61.670 66.667 4.39 0.37 43.61 5.01
160 161 3.887335 TACGCAAACTGGTCGGGCC 62.887 63.158 0.00 0.00 37.90 5.80
161 162 2.357760 TACGCAAACTGGTCGGGC 60.358 61.111 0.00 0.00 0.00 6.13
162 163 1.289109 CTGTACGCAAACTGGTCGGG 61.289 60.000 0.00 0.00 0.00 5.14
163 164 0.599204 ACTGTACGCAAACTGGTCGG 60.599 55.000 0.00 0.00 0.00 4.79
164 165 2.054687 TACTGTACGCAAACTGGTCG 57.945 50.000 0.00 0.00 0.00 4.79
165 166 4.799419 TTTTACTGTACGCAAACTGGTC 57.201 40.909 0.00 0.00 0.00 4.02
166 167 4.201940 GGTTTTTACTGTACGCAAACTGGT 60.202 41.667 12.58 0.00 0.00 4.00
167 168 4.201930 TGGTTTTTACTGTACGCAAACTGG 60.202 41.667 12.58 0.00 0.00 4.00
168 169 4.911053 TGGTTTTTACTGTACGCAAACTG 58.089 39.130 12.58 0.00 0.00 3.16
169 170 5.124297 AGTTGGTTTTTACTGTACGCAAACT 59.876 36.000 12.58 5.73 0.00 2.66
170 171 5.334319 AGTTGGTTTTTACTGTACGCAAAC 58.666 37.500 7.47 7.47 0.00 2.93
171 172 5.564048 AGTTGGTTTTTACTGTACGCAAA 57.436 34.783 0.00 0.00 0.00 3.68
172 173 6.674694 TTAGTTGGTTTTTACTGTACGCAA 57.325 33.333 0.00 0.00 0.00 4.85
173 174 6.864360 ATTAGTTGGTTTTTACTGTACGCA 57.136 33.333 0.00 0.00 0.00 5.24
174 175 9.321590 CTTTATTAGTTGGTTTTTACTGTACGC 57.678 33.333 0.00 0.00 0.00 4.42
220 221 9.337396 CCCCTTTTTAAGTTTTTATTTGCTTCT 57.663 29.630 0.00 0.00 0.00 2.85
221 222 9.332502 TCCCCTTTTTAAGTTTTTATTTGCTTC 57.667 29.630 0.00 0.00 0.00 3.86
222 223 9.688091 TTCCCCTTTTTAAGTTTTTATTTGCTT 57.312 25.926 0.00 0.00 0.00 3.91
223 224 9.688091 TTTCCCCTTTTTAAGTTTTTATTTGCT 57.312 25.926 0.00 0.00 0.00 3.91
228 229 9.635404 CCCTTTTTCCCCTTTTTAAGTTTTTAT 57.365 29.630 0.00 0.00 0.00 1.40
229 230 8.833734 TCCCTTTTTCCCCTTTTTAAGTTTTTA 58.166 29.630 0.00 0.00 0.00 1.52
230 231 7.700846 TCCCTTTTTCCCCTTTTTAAGTTTTT 58.299 30.769 0.00 0.00 0.00 1.94
231 232 7.273457 TCCCTTTTTCCCCTTTTTAAGTTTT 57.727 32.000 0.00 0.00 0.00 2.43
232 233 6.894735 TCCCTTTTTCCCCTTTTTAAGTTT 57.105 33.333 0.00 0.00 0.00 2.66
233 234 6.183361 CCATCCCTTTTTCCCCTTTTTAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
234 235 5.309543 CCATCCCTTTTTCCCCTTTTTAAGT 59.690 40.000 0.00 0.00 0.00 2.24
235 236 5.280470 CCCATCCCTTTTTCCCCTTTTTAAG 60.280 44.000 0.00 0.00 0.00 1.85
236 237 4.599676 CCCATCCCTTTTTCCCCTTTTTAA 59.400 41.667 0.00 0.00 0.00 1.52
237 238 4.172020 CCCATCCCTTTTTCCCCTTTTTA 58.828 43.478 0.00 0.00 0.00 1.52
238 239 2.986019 CCCATCCCTTTTTCCCCTTTTT 59.014 45.455 0.00 0.00 0.00 1.94
239 240 2.089638 ACCCATCCCTTTTTCCCCTTTT 60.090 45.455 0.00 0.00 0.00 2.27
240 241 1.512194 ACCCATCCCTTTTTCCCCTTT 59.488 47.619 0.00 0.00 0.00 3.11
241 242 1.176182 ACCCATCCCTTTTTCCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
242 243 1.176182 AACCCATCCCTTTTTCCCCT 58.824 50.000 0.00 0.00 0.00 4.79
243 244 1.275666 CAACCCATCCCTTTTTCCCC 58.724 55.000 0.00 0.00 0.00 4.81
244 245 1.275666 CCAACCCATCCCTTTTTCCC 58.724 55.000 0.00 0.00 0.00 3.97
245 246 1.275666 CCCAACCCATCCCTTTTTCC 58.724 55.000 0.00 0.00 0.00 3.13
246 247 0.613260 GCCCAACCCATCCCTTTTTC 59.387 55.000 0.00 0.00 0.00 2.29
247 248 1.191489 CGCCCAACCCATCCCTTTTT 61.191 55.000 0.00 0.00 0.00 1.94
248 249 1.609210 CGCCCAACCCATCCCTTTT 60.609 57.895 0.00 0.00 0.00 2.27
249 250 2.037208 CGCCCAACCCATCCCTTT 59.963 61.111 0.00 0.00 0.00 3.11
250 251 4.060667 CCGCCCAACCCATCCCTT 62.061 66.667 0.00 0.00 0.00 3.95
251 252 3.954740 TACCGCCCAACCCATCCCT 62.955 63.158 0.00 0.00 0.00 4.20
279 280 3.696051 TGATTTGCTATTGGTCTGAAGCC 59.304 43.478 0.00 0.00 33.99 4.35
285 286 4.393062 CGTCAGTTGATTTGCTATTGGTCT 59.607 41.667 0.00 0.00 0.00 3.85
308 309 4.913345 GGTTTTTACTGACCACGTATTTGC 59.087 41.667 0.00 0.00 35.95 3.68
330 331 1.370900 GCGCTGTTTTGTGAGCTGG 60.371 57.895 0.00 0.00 32.70 4.85
349 360 7.149063 GCTTTGAGATTCGTGATTTTCTTTCAC 60.149 37.037 0.00 0.00 40.06 3.18
360 371 5.906073 TGATATCTGCTTTGAGATTCGTGA 58.094 37.500 3.98 0.00 34.42 4.35
363 374 7.637229 ACAATTGATATCTGCTTTGAGATTCG 58.363 34.615 13.59 0.00 34.42 3.34
398 409 8.871125 TGCCTGAAAATTAATTTTGGGTTAGTA 58.129 29.630 26.69 9.20 39.86 1.82
462 475 3.999663 AGAAAGCGAGAAGGAAGACATTG 59.000 43.478 0.00 0.00 0.00 2.82
478 491 2.741517 GCAAGAGAGTGAAGGAGAAAGC 59.258 50.000 0.00 0.00 0.00 3.51
549 562 7.036425 AGGAAACTACCCTTGGGAAACATAATA 60.036 37.037 13.39 0.00 40.61 0.98
575 588 2.691409 AAGCGCAATAGGACAGCTAA 57.309 45.000 11.47 0.00 37.15 3.09
617 631 2.158623 CCATTAGCAATAGGGCACTCCA 60.159 50.000 0.00 0.00 38.24 3.86
670 684 2.128035 GATAAGCGCACGCAGTATTCT 58.872 47.619 18.24 0.00 41.61 2.40
732 746 8.242053 TCTTGCACATAAAGTACAGTACTACTC 58.758 37.037 13.87 1.01 38.26 2.59
737 751 7.050281 CACTCTTGCACATAAAGTACAGTAC 57.950 40.000 2.05 2.05 0.00 2.73
754 768 1.972872 ACCAACCTCTTGCACTCTTG 58.027 50.000 0.00 0.00 0.00 3.02
755 769 2.301346 CAACCAACCTCTTGCACTCTT 58.699 47.619 0.00 0.00 0.00 2.85
756 770 1.477558 CCAACCAACCTCTTGCACTCT 60.478 52.381 0.00 0.00 0.00 3.24
757 771 0.954452 CCAACCAACCTCTTGCACTC 59.046 55.000 0.00 0.00 0.00 3.51
758 772 0.258774 ACCAACCAACCTCTTGCACT 59.741 50.000 0.00 0.00 0.00 4.40
759 773 0.385390 CACCAACCAACCTCTTGCAC 59.615 55.000 0.00 0.00 0.00 4.57
760 774 1.391157 GCACCAACCAACCTCTTGCA 61.391 55.000 0.00 0.00 0.00 4.08
761 775 1.363807 GCACCAACCAACCTCTTGC 59.636 57.895 0.00 0.00 0.00 4.01
762 776 0.385390 GTGCACCAACCAACCTCTTG 59.615 55.000 5.22 0.00 0.00 3.02
763 777 0.258774 AGTGCACCAACCAACCTCTT 59.741 50.000 14.63 0.00 0.00 2.85
764 778 0.466189 CAGTGCACCAACCAACCTCT 60.466 55.000 14.63 0.00 0.00 3.69
765 779 1.455383 CCAGTGCACCAACCAACCTC 61.455 60.000 14.63 0.00 0.00 3.85
766 780 1.455587 CCAGTGCACCAACCAACCT 60.456 57.895 14.63 0.00 0.00 3.50
767 781 1.734388 GACCAGTGCACCAACCAACC 61.734 60.000 14.63 0.00 0.00 3.77
768 782 1.733526 GACCAGTGCACCAACCAAC 59.266 57.895 14.63 0.00 0.00 3.77
769 783 1.821759 CGACCAGTGCACCAACCAA 60.822 57.895 14.63 0.00 0.00 3.67
770 784 2.203139 CGACCAGTGCACCAACCA 60.203 61.111 14.63 0.00 0.00 3.67
771 785 2.203153 ACGACCAGTGCACCAACC 60.203 61.111 14.63 0.00 0.00 3.77
772 786 2.594962 CGACGACCAGTGCACCAAC 61.595 63.158 14.63 2.00 0.00 3.77
773 787 2.279851 CGACGACCAGTGCACCAA 60.280 61.111 14.63 0.00 0.00 3.67
774 788 3.493830 GACGACGACCAGTGCACCA 62.494 63.158 14.63 0.00 0.00 4.17
775 789 2.733593 GACGACGACCAGTGCACC 60.734 66.667 14.63 0.00 0.00 5.01
776 790 2.016704 CAGACGACGACCAGTGCAC 61.017 63.158 9.40 9.40 0.00 4.57
777 791 2.335011 CAGACGACGACCAGTGCA 59.665 61.111 0.00 0.00 0.00 4.57
778 792 1.729838 GACAGACGACGACCAGTGC 60.730 63.158 0.00 0.00 0.00 4.40
779 793 0.386100 CTGACAGACGACGACCAGTG 60.386 60.000 0.00 0.00 0.00 3.66
780 794 0.818445 ACTGACAGACGACGACCAGT 60.818 55.000 10.08 1.77 0.00 4.00
781 795 0.110147 GACTGACAGACGACGACCAG 60.110 60.000 10.08 1.09 0.00 4.00
782 796 0.816421 TGACTGACAGACGACGACCA 60.816 55.000 10.08 0.00 0.00 4.02
783 797 1.947013 TGACTGACAGACGACGACC 59.053 57.895 10.08 0.00 0.00 4.79
853 867 2.158652 AGATGTGGGCTGATGATTGGAG 60.159 50.000 0.00 0.00 0.00 3.86
868 882 3.938334 TCGAGAGAGAGAGTTCAGATGTG 59.062 47.826 0.00 0.00 34.84 3.21
926 958 2.029964 GTGGCGGTCGAACTGGAA 59.970 61.111 0.00 0.00 0.00 3.53
1020 1398 1.965930 GAACGGCAGCACCATGACA 60.966 57.895 0.00 0.00 39.03 3.58
1279 1684 1.409064 CTGCTCGACATAGCCTGGTAA 59.591 52.381 0.00 0.00 42.05 2.85
1386 1809 2.892425 GGGAAGATGCAGGCGACG 60.892 66.667 0.00 0.00 0.00 5.12
1514 2325 4.640201 TGATACACAAGCTTTGCCTATTCC 59.360 41.667 0.00 0.00 0.00 3.01
1515 2326 5.818136 TGATACACAAGCTTTGCCTATTC 57.182 39.130 0.00 0.00 0.00 1.75
1516 2327 6.183360 GGAATGATACACAAGCTTTGCCTATT 60.183 38.462 0.00 0.00 0.00 1.73
1517 2328 5.300286 GGAATGATACACAAGCTTTGCCTAT 59.700 40.000 0.00 0.00 0.00 2.57
1518 2329 4.640201 GGAATGATACACAAGCTTTGCCTA 59.360 41.667 0.00 0.00 0.00 3.93
1521 2332 4.439305 TGGAATGATACACAAGCTTTGC 57.561 40.909 0.00 0.00 0.00 3.68
1526 2337 4.498682 GCCAAGATGGAATGATACACAAGC 60.499 45.833 0.00 0.00 40.96 4.01
1528 2339 4.598022 TGCCAAGATGGAATGATACACAA 58.402 39.130 0.00 0.00 40.96 3.33
1529 2340 4.233632 TGCCAAGATGGAATGATACACA 57.766 40.909 0.00 0.00 40.96 3.72
1530 2341 5.068636 AGATGCCAAGATGGAATGATACAC 58.931 41.667 0.00 0.00 35.37 2.90
1531 2342 5.314718 AGATGCCAAGATGGAATGATACA 57.685 39.130 0.00 0.00 35.37 2.29
1533 2344 4.521639 GCAAGATGCCAAGATGGAATGATA 59.478 41.667 0.00 0.00 35.37 2.15
1535 2346 2.691526 GCAAGATGCCAAGATGGAATGA 59.308 45.455 0.00 0.00 35.37 2.57
1536 2347 2.429250 TGCAAGATGCCAAGATGGAATG 59.571 45.455 0.00 0.00 44.23 2.67
1537 2348 2.429610 GTGCAAGATGCCAAGATGGAAT 59.570 45.455 0.00 0.00 44.23 3.01
1539 2350 1.005097 AGTGCAAGATGCCAAGATGGA 59.995 47.619 0.00 0.00 44.23 3.41
1540 2351 1.134367 CAGTGCAAGATGCCAAGATGG 59.866 52.381 0.00 0.00 44.23 3.51
1541 2352 1.469251 GCAGTGCAAGATGCCAAGATG 60.469 52.381 11.09 0.00 44.23 2.90
1542 2353 0.815734 GCAGTGCAAGATGCCAAGAT 59.184 50.000 11.09 0.00 44.23 2.40
1544 2355 4.883026 GCAGTGCAAGATGCCAAG 57.117 55.556 11.09 0.00 44.23 3.61
1548 2359 1.211969 CACAGGCAGTGCAAGATGC 59.788 57.895 18.61 10.51 45.29 3.91
1597 3224 3.947612 ATGGCAATCCTCTGTTCAGAT 57.052 42.857 2.89 0.00 0.00 2.90
1626 3254 3.065655 CAGTCCAGTGCTTCTTCTCTTG 58.934 50.000 0.00 0.00 0.00 3.02
1651 3279 8.146412 GGAAGCCTGCATTTATTCATAGAAATT 58.854 33.333 0.00 0.00 0.00 1.82
1658 3286 2.624838 CGGGAAGCCTGCATTTATTCAT 59.375 45.455 0.00 0.00 0.00 2.57
1685 3542 0.029433 CGATCTCGAATGCACCTCGA 59.971 55.000 18.65 18.65 42.75 4.04
1691 3548 2.108976 GGGGCGATCTCGAATGCA 59.891 61.111 3.33 0.00 43.02 3.96
1979 3839 2.668185 ATTTGTCGGTGTGGGCGTCA 62.668 55.000 0.00 0.00 0.00 4.35
2015 3875 0.392193 AGATGGTGAAGCTGCCGAAG 60.392 55.000 0.00 0.00 0.00 3.79
2124 3984 2.348998 CTCCTTGCTCAGGCCGTT 59.651 61.111 0.00 0.00 43.55 4.44
2140 4000 1.603802 TCGTAAACTCGTCGAACCACT 59.396 47.619 0.00 0.00 0.00 4.00
2183 4049 2.027192 ACACCAACTAACGATCATGCCT 60.027 45.455 0.00 0.00 0.00 4.75
2252 4125 2.354510 GGCGCACAGATTAAACATAGCA 59.645 45.455 10.83 0.00 0.00 3.49
2301 4174 3.520290 AAAGTTCGCCATCACGATCTA 57.480 42.857 0.00 0.00 42.54 1.98
2453 4347 2.355363 CGGTTCGCGAACTGGTCA 60.355 61.111 40.41 11.58 42.46 4.02
2533 4427 1.002011 GCCACCTCCTCCTTTGTCC 60.002 63.158 0.00 0.00 0.00 4.02
2537 4431 2.529389 ACGGCCACCTCCTCCTTT 60.529 61.111 2.24 0.00 0.00 3.11
2711 4787 1.061131 GCGACCATCACATGACGAAAG 59.939 52.381 0.00 0.00 34.03 2.62
2716 4792 1.202463 AGCTAGCGACCATCACATGAC 60.202 52.381 9.55 0.00 0.00 3.06
2719 4795 1.001268 CGTAGCTAGCGACCATCACAT 60.001 52.381 20.49 0.00 0.00 3.21
2734 5194 4.879545 TCCCTTGGATTAACAAATCGTAGC 59.120 41.667 0.00 0.00 0.00 3.58
2735 5195 6.113411 ACTCCCTTGGATTAACAAATCGTAG 58.887 40.000 0.00 0.00 0.00 3.51
2736 5196 6.057321 ACTCCCTTGGATTAACAAATCGTA 57.943 37.500 0.00 0.00 0.00 3.43
2737 5197 4.918588 ACTCCCTTGGATTAACAAATCGT 58.081 39.130 0.00 0.00 0.00 3.73
2744 5204 7.248437 CACGATTTAAACTCCCTTGGATTAAC 58.752 38.462 0.00 0.00 0.00 2.01
2745 5205 6.376018 CCACGATTTAAACTCCCTTGGATTAA 59.624 38.462 0.00 0.00 0.00 1.40
2746 5206 5.883673 CCACGATTTAAACTCCCTTGGATTA 59.116 40.000 0.00 0.00 0.00 1.75
2747 5207 4.705023 CCACGATTTAAACTCCCTTGGATT 59.295 41.667 0.00 0.00 0.00 3.01
2846 5306 3.334881 ACTCCCTCCATCCTGTCAAAAAT 59.665 43.478 0.00 0.00 0.00 1.82
2879 5431 8.342634 ACATATAACGAGTAAAAATCATGCCAC 58.657 33.333 0.00 0.00 0.00 5.01
2921 5667 6.183360 GCTATGCAGTCCAAAGATTACACAAT 60.183 38.462 0.00 0.00 0.00 2.71
2932 5682 5.476599 ACAAAATGTAGCTATGCAGTCCAAA 59.523 36.000 0.00 0.00 0.00 3.28
2959 5709 4.256920 AGAACATCAGGTCCTCAAAATCG 58.743 43.478 0.00 0.00 0.00 3.34
2960 5710 8.964476 TTATAGAACATCAGGTCCTCAAAATC 57.036 34.615 0.00 0.00 0.00 2.17
2961 5711 9.753674 TTTTATAGAACATCAGGTCCTCAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
3532 6685 2.185350 CTAGCGAGCCCACAGTGG 59.815 66.667 13.35 13.35 37.25 4.00
3533 6686 1.153745 GACTAGCGAGCCCACAGTG 60.154 63.158 0.00 0.00 0.00 3.66
3534 6687 2.352032 GGACTAGCGAGCCCACAGT 61.352 63.158 0.00 0.00 0.00 3.55
3535 6688 2.496817 GGACTAGCGAGCCCACAG 59.503 66.667 0.00 0.00 0.00 3.66
3536 6689 3.075005 GGGACTAGCGAGCCCACA 61.075 66.667 17.30 0.00 38.34 4.17
3537 6690 3.851128 GGGGACTAGCGAGCCCAC 61.851 72.222 21.50 7.13 39.52 4.61
3538 6691 4.075793 AGGGGACTAGCGAGCCCA 62.076 66.667 21.50 0.00 39.52 5.36
3539 6692 3.228017 GAGGGGACTAGCGAGCCC 61.228 72.222 14.94 14.94 44.43 5.19
3540 6693 3.228017 GGAGGGGACTAGCGAGCC 61.228 72.222 0.00 0.00 44.43 4.70
3541 6694 3.228017 GGGAGGGGACTAGCGAGC 61.228 72.222 0.00 0.00 44.43 5.03
3542 6695 1.075896 AAGGGAGGGGACTAGCGAG 60.076 63.158 0.00 0.00 44.43 5.03
3543 6696 1.381327 CAAGGGAGGGGACTAGCGA 60.381 63.158 0.00 0.00 44.43 4.93
3544 6697 3.095347 GCAAGGGAGGGGACTAGCG 62.095 68.421 0.00 0.00 44.43 4.26
3545 6698 2.747443 GGCAAGGGAGGGGACTAGC 61.747 68.421 0.00 0.00 44.43 3.42
3546 6699 1.003573 AGGCAAGGGAGGGGACTAG 59.996 63.158 0.00 0.00 44.43 2.57
3547 6700 1.003051 GAGGCAAGGGAGGGGACTA 59.997 63.158 0.00 0.00 44.43 2.59
3549 6702 3.412408 GGAGGCAAGGGAGGGGAC 61.412 72.222 0.00 0.00 0.00 4.46
3550 6703 3.626596 AGGAGGCAAGGGAGGGGA 61.627 66.667 0.00 0.00 0.00 4.81
3551 6704 3.093172 GAGGAGGCAAGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
3552 6705 2.041928 AGAGGAGGCAAGGGAGGG 59.958 66.667 0.00 0.00 0.00 4.30
3553 6706 1.002792 AGAGAGGAGGCAAGGGAGG 59.997 63.158 0.00 0.00 0.00 4.30
3554 6707 1.048160 GGAGAGAGGAGGCAAGGGAG 61.048 65.000 0.00 0.00 0.00 4.30
3555 6708 1.002274 GGAGAGAGGAGGCAAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
3556 6709 2.069430 GGGAGAGAGGAGGCAAGGG 61.069 68.421 0.00 0.00 0.00 3.95
3557 6710 2.069430 GGGGAGAGAGGAGGCAAGG 61.069 68.421 0.00 0.00 0.00 3.61
3558 6711 1.002792 AGGGGAGAGAGGAGGCAAG 59.997 63.158 0.00 0.00 0.00 4.01
3559 6712 1.002274 GAGGGGAGAGAGGAGGCAA 59.998 63.158 0.00 0.00 0.00 4.52
3560 6713 2.693017 GAGGGGAGAGAGGAGGCA 59.307 66.667 0.00 0.00 0.00 4.75
3561 6714 2.520741 CGAGGGGAGAGAGGAGGC 60.521 72.222 0.00 0.00 0.00 4.70
3562 6715 2.520741 GCGAGGGGAGAGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
3563 6716 1.152567 ATGCGAGGGGAGAGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
3564 6717 1.456518 CATGCGAGGGGAGAGAGGA 60.457 63.158 0.00 0.00 0.00 3.71
3565 6718 2.506061 CCATGCGAGGGGAGAGAGG 61.506 68.421 0.00 0.00 0.00 3.69
3566 6719 3.136750 CCATGCGAGGGGAGAGAG 58.863 66.667 0.00 0.00 0.00 3.20
3585 6738 1.953138 CCAAGATGCGAGCTAGGCG 60.953 63.158 4.93 0.00 0.00 5.52
3586 6739 2.250237 GCCAAGATGCGAGCTAGGC 61.250 63.158 2.37 2.37 0.00 3.93
3587 6740 4.040068 GCCAAGATGCGAGCTAGG 57.960 61.111 0.00 0.00 0.00 3.02
3596 6749 4.883354 GGAGGGGGCGCCAAGATG 62.883 72.222 30.85 0.00 0.00 2.90
3605 6758 4.448976 GAGCCAAAGGGAGGGGGC 62.449 72.222 0.00 0.00 46.77 5.80
3606 6759 3.744155 GGAGCCAAAGGGAGGGGG 61.744 72.222 0.00 0.00 35.59 5.40
3607 6760 2.615288 AGGAGCCAAAGGGAGGGG 60.615 66.667 0.00 0.00 35.59 4.79
3608 6761 2.684499 GGAGGAGCCAAAGGGAGGG 61.684 68.421 0.00 0.00 35.59 4.30
3609 6762 1.617839 AGGAGGAGCCAAAGGGAGG 60.618 63.158 0.00 0.00 40.02 4.30
3610 6763 0.911525 TGAGGAGGAGCCAAAGGGAG 60.912 60.000 0.00 0.00 40.02 4.30
3611 6764 0.475632 TTGAGGAGGAGCCAAAGGGA 60.476 55.000 0.00 0.00 40.02 4.20
3612 6765 0.405585 TTTGAGGAGGAGCCAAAGGG 59.594 55.000 0.00 0.00 40.02 3.95
3618 6771 0.912006 AGGAGGTTTGAGGAGGAGCC 60.912 60.000 0.00 0.00 0.00 4.70
3620 6773 1.280421 CCAAGGAGGTTTGAGGAGGAG 59.720 57.143 0.00 0.00 0.00 3.69
3623 6776 0.322906 GCCCAAGGAGGTTTGAGGAG 60.323 60.000 0.00 0.00 34.66 3.69
3628 6781 0.608035 TTAGCGCCCAAGGAGGTTTG 60.608 55.000 2.29 0.00 34.62 2.93
3631 6784 1.002502 GTTTAGCGCCCAAGGAGGT 60.003 57.895 2.29 0.00 37.03 3.85
3632 6785 1.002624 TGTTTAGCGCCCAAGGAGG 60.003 57.895 2.29 0.00 37.03 4.30
3633 6786 0.321653 AGTGTTTAGCGCCCAAGGAG 60.322 55.000 2.29 0.00 0.00 3.69
3635 6788 1.816074 TTAGTGTTTAGCGCCCAAGG 58.184 50.000 2.29 0.00 0.00 3.61
3636 6789 3.252458 AGTTTTAGTGTTTAGCGCCCAAG 59.748 43.478 2.29 0.00 0.00 3.61
3637 6790 3.215975 AGTTTTAGTGTTTAGCGCCCAA 58.784 40.909 2.29 0.00 0.00 4.12
3640 6793 5.626543 GGTTTTAGTTTTAGTGTTTAGCGCC 59.373 40.000 2.29 0.00 0.00 6.53
3641 6794 5.626543 GGGTTTTAGTTTTAGTGTTTAGCGC 59.373 40.000 0.00 0.00 0.00 5.92
3642 6795 5.847515 CGGGTTTTAGTTTTAGTGTTTAGCG 59.152 40.000 0.00 0.00 0.00 4.26
3645 6798 7.856145 TGACGGGTTTTAGTTTTAGTGTTTA 57.144 32.000 0.00 0.00 0.00 2.01
3647 6800 6.756299 TTGACGGGTTTTAGTTTTAGTGTT 57.244 33.333 0.00 0.00 0.00 3.32
3648 6801 6.756299 TTTGACGGGTTTTAGTTTTAGTGT 57.244 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.