Multiple sequence alignment - TraesCS5B01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G398500 chr5B 100.000 3850 0 0 1 3850 576159706 576163555 0.000000e+00 7110.0
1 TraesCS5B01G398500 chr5B 88.442 1168 99 27 1013 2153 576225346 576226504 0.000000e+00 1376.0
2 TraesCS5B01G398500 chr5B 93.213 663 25 6 937 1595 576053726 576054372 0.000000e+00 957.0
3 TraesCS5B01G398500 chr5B 96.120 567 21 1 1588 2153 576054957 576055523 0.000000e+00 924.0
4 TraesCS5B01G398500 chr5B 91.509 530 25 8 2238 2767 576055517 576056026 0.000000e+00 712.0
5 TraesCS5B01G398500 chr5B 87.037 324 36 5 2238 2558 576226498 576226818 1.020000e-95 361.0
6 TraesCS5B01G398500 chr5B 77.374 358 71 9 2238 2590 576257899 576258251 1.810000e-48 204.0
7 TraesCS5B01G398500 chr5B 74.395 496 102 18 1059 1534 576213478 576213968 5.080000e-44 189.0
8 TraesCS5B01G398500 chr5B 85.833 120 11 4 381 495 575980051 575980169 5.220000e-24 122.0
9 TraesCS5B01G398500 chr5B 90.805 87 7 1 224 309 575979798 575979884 8.740000e-22 115.0
10 TraesCS5B01G398500 chr5B 78.049 123 27 0 2864 2986 585202989 585203111 1.150000e-10 78.7
11 TraesCS5B01G398500 chr5A 92.549 1973 102 22 869 2818 589311404 589313354 0.000000e+00 2787.0
12 TraesCS5B01G398500 chr5A 88.969 1115 106 13 1044 2153 589328297 589329399 0.000000e+00 1362.0
13 TraesCS5B01G398500 chr5A 87.903 868 90 13 2989 3850 683628342 683629200 0.000000e+00 1007.0
14 TraesCS5B01G398500 chr5A 78.721 813 134 32 1760 2559 589337552 589338338 1.230000e-139 507.0
15 TraesCS5B01G398500 chr5A 88.701 354 36 4 2238 2589 589329393 589329744 2.750000e-116 429.0
16 TraesCS5B01G398500 chr5A 81.532 509 79 11 1656 2152 589579787 589580292 4.630000e-109 405.0
17 TraesCS5B01G398500 chr5A 84.615 325 18 18 1 296 589300740 589301061 1.050000e-75 294.0
18 TraesCS5B01G398500 chr5A 76.289 485 100 15 1059 1534 589315627 589316105 1.070000e-60 244.0
19 TraesCS5B01G398500 chr5A 77.031 357 74 8 2238 2590 589580416 589580768 8.440000e-47 198.0
20 TraesCS5B01G398500 chr5A 88.462 130 10 3 515 640 589310679 589310807 6.660000e-33 152.0
21 TraesCS5B01G398500 chr5A 78.112 233 26 17 647 856 589310988 589311218 1.450000e-24 124.0
22 TraesCS5B01G398500 chr5A 87.500 80 9 1 2866 2944 175826340 175826419 1.470000e-14 91.6
23 TraesCS5B01G398500 chr5D 92.396 1920 91 33 797 2670 469228220 469230130 0.000000e+00 2686.0
24 TraesCS5B01G398500 chr5D 88.792 1142 102 21 1015 2153 469244695 469245813 0.000000e+00 1376.0
25 TraesCS5B01G398500 chr5D 87.500 400 45 4 1757 2152 469242848 469243246 1.260000e-124 457.0
26 TraesCS5B01G398500 chr5D 86.250 400 50 4 1757 2152 469236240 469236638 2.750000e-116 429.0
27 TraesCS5B01G398500 chr5D 86.196 326 37 7 2238 2559 469245807 469246128 2.850000e-91 346.0
28 TraesCS5B01G398500 chr5D 83.626 342 26 14 1 313 469226284 469226624 1.050000e-75 294.0
29 TraesCS5B01G398500 chr5D 85.833 120 17 0 2864 2983 298064731 298064850 1.120000e-25 128.0
30 TraesCS5B01G398500 chr3B 95.249 863 36 3 2989 3850 106721017 106721875 0.000000e+00 1362.0
31 TraesCS5B01G398500 chr7B 93.627 863 52 1 2988 3850 41307008 41307867 0.000000e+00 1286.0
32 TraesCS5B01G398500 chr2B 92.343 862 55 6 2989 3850 490788814 490787964 0.000000e+00 1216.0
33 TraesCS5B01G398500 chr4B 93.792 741 43 2 3110 3850 379614523 379613786 0.000000e+00 1110.0
34 TraesCS5B01G398500 chr4B 89.261 866 81 11 2989 3850 575388070 575387213 0.000000e+00 1074.0
35 TraesCS5B01G398500 chr6D 88.708 859 84 8 2988 3844 134715829 134716676 0.000000e+00 1037.0
36 TraesCS5B01G398500 chr6D 88.372 860 85 10 2988 3844 134310591 134311438 0.000000e+00 1020.0
37 TraesCS5B01G398500 chr4D 88.228 858 87 8 2989 3844 501050134 501050979 0.000000e+00 1013.0
38 TraesCS5B01G398500 chr7D 85.833 120 17 0 2864 2983 613058620 613058501 1.120000e-25 128.0
39 TraesCS5B01G398500 chr7D 89.024 82 8 1 2864 2944 592873207 592873126 2.450000e-17 100.0
40 TraesCS5B01G398500 chr1A 83.784 111 17 1 2869 2979 32393072 32392963 1.890000e-18 104.0
41 TraesCS5B01G398500 chr4A 81.148 122 21 2 2866 2986 717417823 717417703 3.170000e-16 97.1
42 TraesCS5B01G398500 chr2D 80.992 121 22 1 2866 2986 615404143 615404024 1.140000e-15 95.3
43 TraesCS5B01G398500 chr1B 83.333 102 17 0 2866 2967 63877867 63877766 1.140000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G398500 chr5B 576159706 576163555 3849 False 7110.000000 7110 100.0000 1 3850 1 chr5B.!!$F1 3849
1 TraesCS5B01G398500 chr5B 576225346 576226818 1472 False 868.500000 1376 87.7395 1013 2558 2 chr5B.!!$F7 1545
2 TraesCS5B01G398500 chr5B 576053726 576056026 2300 False 864.333333 957 93.6140 937 2767 3 chr5B.!!$F6 1830
3 TraesCS5B01G398500 chr5A 683628342 683629200 858 False 1007.000000 1007 87.9030 2989 3850 1 chr5A.!!$F4 861
4 TraesCS5B01G398500 chr5A 589328297 589329744 1447 False 895.500000 1362 88.8350 1044 2589 2 chr5A.!!$F6 1545
5 TraesCS5B01G398500 chr5A 589310679 589316105 5426 False 826.750000 2787 83.8530 515 2818 4 chr5A.!!$F5 2303
6 TraesCS5B01G398500 chr5A 589337552 589338338 786 False 507.000000 507 78.7210 1760 2559 1 chr5A.!!$F3 799
7 TraesCS5B01G398500 chr5A 589579787 589580768 981 False 301.500000 405 79.2815 1656 2590 2 chr5A.!!$F7 934
8 TraesCS5B01G398500 chr5D 469226284 469230130 3846 False 1490.000000 2686 88.0110 1 2670 2 chr5D.!!$F3 2669
9 TraesCS5B01G398500 chr5D 469242848 469246128 3280 False 726.333333 1376 87.4960 1015 2559 3 chr5D.!!$F4 1544
10 TraesCS5B01G398500 chr3B 106721017 106721875 858 False 1362.000000 1362 95.2490 2989 3850 1 chr3B.!!$F1 861
11 TraesCS5B01G398500 chr7B 41307008 41307867 859 False 1286.000000 1286 93.6270 2988 3850 1 chr7B.!!$F1 862
12 TraesCS5B01G398500 chr2B 490787964 490788814 850 True 1216.000000 1216 92.3430 2989 3850 1 chr2B.!!$R1 861
13 TraesCS5B01G398500 chr4B 379613786 379614523 737 True 1110.000000 1110 93.7920 3110 3850 1 chr4B.!!$R1 740
14 TraesCS5B01G398500 chr4B 575387213 575388070 857 True 1074.000000 1074 89.2610 2989 3850 1 chr4B.!!$R2 861
15 TraesCS5B01G398500 chr6D 134715829 134716676 847 False 1037.000000 1037 88.7080 2988 3844 1 chr6D.!!$F2 856
16 TraesCS5B01G398500 chr6D 134310591 134311438 847 False 1020.000000 1020 88.3720 2988 3844 1 chr6D.!!$F1 856
17 TraesCS5B01G398500 chr4D 501050134 501050979 845 False 1013.000000 1013 88.2280 2989 3844 1 chr4D.!!$F1 855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 467 0.034089 GGCTAGGAAATGTGGCTGGT 60.034 55.0 0.0 0.0 0.0 4.00 F
441 471 0.038744 AGGAAATGTGGCTGGTCAGG 59.961 55.0 0.0 0.0 0.0 3.86 F
757 1974 0.102663 GTCTTACTGGTAGGAGGCGC 59.897 60.0 0.0 0.0 0.0 6.53 F
906 2414 0.106167 TCTGTCCCCCACTATCGGAG 60.106 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 5491 1.276145 GCTCGTCAAGTGACACGGAC 61.276 60.000 18.08 18.08 44.99 4.79 R
2222 5568 1.515521 CCTGCCGGAACCAAACAGAC 61.516 60.000 5.05 0.00 0.00 3.51 R
2639 5995 1.222387 GCTATACCACACCCGCCAA 59.778 57.895 0.00 0.00 0.00 4.52 R
2900 6258 0.029700 GACAAAACCCGACCAAACCG 59.970 55.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.839124 TGGAGTTGCAATCACTTTCATTAT 57.161 33.333 0.59 0.00 0.00 1.28
30 31 7.312657 TGCAATCACTTTCATTATCTCACTC 57.687 36.000 0.00 0.00 0.00 3.51
31 32 6.036408 TGCAATCACTTTCATTATCTCACTCG 59.964 38.462 0.00 0.00 0.00 4.18
72 73 4.444838 CGATCGGCGGTTGGTCCA 62.445 66.667 7.38 0.00 36.03 4.02
97 98 3.782889 AAATCTTGCCCGATTTGTAGC 57.217 42.857 8.88 0.00 40.91 3.58
100 101 0.099436 CTTGCCCGATTTGTAGCTGC 59.901 55.000 0.00 0.00 0.00 5.25
107 108 2.411935 CCGATTTGTAGCTGCGCATATG 60.412 50.000 12.24 0.00 0.00 1.78
126 127 3.243359 TGATATTTCTCCCCCAATGGC 57.757 47.619 0.00 0.00 0.00 4.40
137 139 2.125552 CAATGGCGCGGAGACAGA 60.126 61.111 8.83 0.00 44.06 3.41
142 144 2.492090 GCGCGGAGACAGACAGAT 59.508 61.111 8.83 0.00 0.00 2.90
143 145 1.875813 GCGCGGAGACAGACAGATG 60.876 63.158 8.83 0.00 0.00 2.90
144 146 1.803289 CGCGGAGACAGACAGATGA 59.197 57.895 0.00 0.00 0.00 2.92
147 149 1.680735 GCGGAGACAGACAGATGAGAT 59.319 52.381 0.00 0.00 0.00 2.75
149 151 2.034432 CGGAGACAGACAGATGAGATGG 59.966 54.545 0.00 0.00 0.00 3.51
150 152 2.224018 GGAGACAGACAGATGAGATGGC 60.224 54.545 0.00 0.00 0.00 4.40
163 191 4.778143 ATGGCGAGAACCCGTGGC 62.778 66.667 0.00 0.00 0.00 5.01
190 219 1.228245 TGGGCAGTTGCTTGGACTC 60.228 57.895 3.88 0.00 41.70 3.36
292 322 2.659063 CGCAGATCCACACTCCCCA 61.659 63.158 0.00 0.00 0.00 4.96
314 344 4.232188 AGATCTGGATCTGTTTGTGCAT 57.768 40.909 11.74 0.00 45.77 3.96
315 345 4.597004 AGATCTGGATCTGTTTGTGCATT 58.403 39.130 11.74 0.00 45.77 3.56
316 346 5.014858 AGATCTGGATCTGTTTGTGCATTT 58.985 37.500 11.74 0.00 45.77 2.32
317 347 4.771590 TCTGGATCTGTTTGTGCATTTC 57.228 40.909 0.00 0.00 0.00 2.17
318 348 4.401022 TCTGGATCTGTTTGTGCATTTCT 58.599 39.130 0.00 0.00 0.00 2.52
319 349 4.828939 TCTGGATCTGTTTGTGCATTTCTT 59.171 37.500 0.00 0.00 0.00 2.52
320 350 4.873817 TGGATCTGTTTGTGCATTTCTTG 58.126 39.130 0.00 0.00 0.00 3.02
321 351 4.583907 TGGATCTGTTTGTGCATTTCTTGA 59.416 37.500 0.00 0.00 0.00 3.02
322 352 5.068855 TGGATCTGTTTGTGCATTTCTTGAA 59.931 36.000 0.00 0.00 0.00 2.69
325 355 5.824429 TCTGTTTGTGCATTTCTTGAAGAG 58.176 37.500 0.00 0.00 0.00 2.85
326 356 5.589855 TCTGTTTGTGCATTTCTTGAAGAGA 59.410 36.000 0.00 0.00 0.00 3.10
327 357 5.824429 TGTTTGTGCATTTCTTGAAGAGAG 58.176 37.500 0.00 0.00 35.37 3.20
328 358 5.357878 TGTTTGTGCATTTCTTGAAGAGAGT 59.642 36.000 0.00 0.00 35.37 3.24
330 360 5.679734 TGTGCATTTCTTGAAGAGAGTTC 57.320 39.130 0.00 0.00 35.37 3.01
331 361 5.125356 TGTGCATTTCTTGAAGAGAGTTCA 58.875 37.500 0.00 0.00 35.37 3.18
332 362 5.008019 TGTGCATTTCTTGAAGAGAGTTCAC 59.992 40.000 0.00 2.17 35.37 3.18
334 364 6.425114 GTGCATTTCTTGAAGAGAGTTCACTA 59.575 38.462 0.00 0.00 35.37 2.74
335 365 7.118971 GTGCATTTCTTGAAGAGAGTTCACTAT 59.881 37.037 0.00 0.00 35.37 2.12
336 366 7.332926 TGCATTTCTTGAAGAGAGTTCACTATC 59.667 37.037 0.00 0.00 35.37 2.08
338 368 6.576662 TTCTTGAAGAGAGTTCACTATCGT 57.423 37.500 0.00 0.00 39.08 3.73
342 372 4.158025 TGAAGAGAGTTCACTATCGTTCCC 59.842 45.833 0.00 0.00 39.08 3.97
344 374 4.345854 AGAGAGTTCACTATCGTTCCCTT 58.654 43.478 0.00 0.00 39.08 3.95
345 375 4.158764 AGAGAGTTCACTATCGTTCCCTTG 59.841 45.833 0.00 0.00 39.08 3.61
346 376 3.833070 AGAGTTCACTATCGTTCCCTTGT 59.167 43.478 0.00 0.00 0.00 3.16
347 377 4.082136 AGAGTTCACTATCGTTCCCTTGTC 60.082 45.833 0.00 0.00 0.00 3.18
349 379 2.165167 TCACTATCGTTCCCTTGTCGT 58.835 47.619 0.00 0.00 0.00 4.34
350 380 3.346315 TCACTATCGTTCCCTTGTCGTA 58.654 45.455 0.00 0.00 0.00 3.43
351 381 3.949754 TCACTATCGTTCCCTTGTCGTAT 59.050 43.478 0.00 0.00 0.00 3.06
354 384 4.883585 ACTATCGTTCCCTTGTCGTATGTA 59.116 41.667 0.00 0.00 0.00 2.29
360 390 5.579511 CGTTCCCTTGTCGTATGTATCTTTT 59.420 40.000 0.00 0.00 0.00 2.27
361 391 6.091713 CGTTCCCTTGTCGTATGTATCTTTTT 59.908 38.462 0.00 0.00 0.00 1.94
362 392 7.276218 CGTTCCCTTGTCGTATGTATCTTTTTA 59.724 37.037 0.00 0.00 0.00 1.52
364 394 8.882415 TCCCTTGTCGTATGTATCTTTTTATC 57.118 34.615 0.00 0.00 0.00 1.75
365 395 7.650504 TCCCTTGTCGTATGTATCTTTTTATCG 59.349 37.037 0.00 0.00 0.00 2.92
366 396 7.437267 CCCTTGTCGTATGTATCTTTTTATCGT 59.563 37.037 0.00 0.00 0.00 3.73
367 397 8.814235 CCTTGTCGTATGTATCTTTTTATCGTT 58.186 33.333 0.00 0.00 0.00 3.85
368 398 9.831054 CTTGTCGTATGTATCTTTTTATCGTTC 57.169 33.333 0.00 0.00 0.00 3.95
369 399 8.343974 TGTCGTATGTATCTTTTTATCGTTCC 57.656 34.615 0.00 0.00 0.00 3.62
371 401 7.650903 GTCGTATGTATCTTTTTATCGTTCCCT 59.349 37.037 0.00 0.00 0.00 4.20
372 402 8.199449 TCGTATGTATCTTTTTATCGTTCCCTT 58.801 33.333 0.00 0.00 0.00 3.95
373 403 8.273557 CGTATGTATCTTTTTATCGTTCCCTTG 58.726 37.037 0.00 0.00 0.00 3.61
374 404 9.106070 GTATGTATCTTTTTATCGTTCCCTTGT 57.894 33.333 0.00 0.00 0.00 3.16
378 408 2.459060 TTTATCGTTCCCTTGTCGCA 57.541 45.000 0.00 0.00 0.00 5.10
379 409 2.684001 TTATCGTTCCCTTGTCGCAT 57.316 45.000 0.00 0.00 0.00 4.73
380 410 1.934589 TATCGTTCCCTTGTCGCATG 58.065 50.000 0.00 0.00 0.00 4.06
381 411 0.036388 ATCGTTCCCTTGTCGCATGT 60.036 50.000 0.00 0.00 0.00 3.21
382 412 0.604073 TCGTTCCCTTGTCGCATGTA 59.396 50.000 0.00 0.00 0.00 2.29
385 415 1.593006 GTTCCCTTGTCGCATGTATCG 59.407 52.381 0.00 0.00 0.00 2.92
386 416 1.107945 TCCCTTGTCGCATGTATCGA 58.892 50.000 0.00 0.00 0.00 3.59
390 420 4.303853 GTCGCATGTATCGACGCT 57.696 55.556 8.29 0.00 45.19 5.07
392 422 1.368850 TCGCATGTATCGACGCTCG 60.369 57.895 0.00 1.67 42.10 5.03
393 423 1.654440 CGCATGTATCGACGCTCGT 60.654 57.895 0.00 0.00 41.35 4.18
394 424 1.840061 GCATGTATCGACGCTCGTG 59.160 57.895 0.00 0.00 41.35 4.35
398 428 0.096454 TGTATCGACGCTCGTGTCTG 59.904 55.000 0.00 3.39 41.35 3.51
402 432 2.355837 GACGCTCGTGTCTGGCAA 60.356 61.111 0.00 0.00 35.95 4.52
403 433 2.356313 ACGCTCGTGTCTGGCAAG 60.356 61.111 0.00 0.00 0.00 4.01
405 435 3.426568 GCTCGTGTCTGGCAAGCC 61.427 66.667 3.61 3.61 0.00 4.35
406 436 2.031012 CTCGTGTCTGGCAAGCCA 59.969 61.111 13.93 13.93 45.02 4.75
424 454 2.162681 CCAGTCTGGTTTTTGGCTAGG 58.837 52.381 11.09 0.00 31.35 3.02
428 458 4.524328 CAGTCTGGTTTTTGGCTAGGAAAT 59.476 41.667 0.00 0.00 0.00 2.17
429 459 4.524328 AGTCTGGTTTTTGGCTAGGAAATG 59.476 41.667 0.00 0.00 0.00 2.32
432 462 3.323403 TGGTTTTTGGCTAGGAAATGTGG 59.677 43.478 0.00 0.00 0.00 4.17
433 463 3.325870 GTTTTTGGCTAGGAAATGTGGC 58.674 45.455 0.00 0.00 0.00 5.01
435 465 1.838112 TTGGCTAGGAAATGTGGCTG 58.162 50.000 0.00 0.00 0.00 4.85
436 466 0.034186 TGGCTAGGAAATGTGGCTGG 60.034 55.000 0.00 0.00 0.00 4.85
437 467 0.034089 GGCTAGGAAATGTGGCTGGT 60.034 55.000 0.00 0.00 0.00 4.00
438 468 1.383523 GCTAGGAAATGTGGCTGGTC 58.616 55.000 0.00 0.00 0.00 4.02
439 469 1.340017 GCTAGGAAATGTGGCTGGTCA 60.340 52.381 0.00 0.00 0.00 4.02
441 471 0.038744 AGGAAATGTGGCTGGTCAGG 59.961 55.000 0.00 0.00 0.00 3.86
442 472 0.967380 GGAAATGTGGCTGGTCAGGG 60.967 60.000 0.00 0.00 0.00 4.45
444 474 0.540365 AAATGTGGCTGGTCAGGGTG 60.540 55.000 0.00 0.00 0.00 4.61
445 475 1.719063 AATGTGGCTGGTCAGGGTGT 61.719 55.000 0.00 0.00 0.00 4.16
449 1297 1.380302 GGCTGGTCAGGGTGTGATT 59.620 57.895 0.00 0.00 37.56 2.57
471 1319 6.554334 TTTCGAATTCTGAAGATCCGTTTT 57.446 33.333 0.00 0.00 0.00 2.43
480 1328 1.663695 AGATCCGTTTTATGCCGTGG 58.336 50.000 0.00 0.00 0.00 4.94
493 1341 4.111016 CGTGGTGCATGCTGCCTG 62.111 66.667 24.78 16.68 44.23 4.85
495 1343 4.289101 TGGTGCATGCTGCCTGGT 62.289 61.111 24.78 0.00 44.23 4.00
496 1344 2.993264 GGTGCATGCTGCCTGGTT 60.993 61.111 20.33 0.00 44.23 3.67
497 1345 1.678635 GGTGCATGCTGCCTGGTTA 60.679 57.895 20.33 0.00 44.23 2.85
498 1346 1.508088 GTGCATGCTGCCTGGTTAC 59.492 57.895 20.33 0.83 44.23 2.50
499 1347 1.074599 TGCATGCTGCCTGGTTACA 59.925 52.632 20.33 0.00 44.23 2.41
500 1348 0.961857 TGCATGCTGCCTGGTTACAG 60.962 55.000 20.33 0.00 44.23 2.74
502 1350 2.221384 GCATGCTGCCTGGTTACAGAA 61.221 52.381 11.37 0.00 44.60 3.02
503 1351 3.716633 GCATGCTGCCTGGTTACAGAAA 61.717 50.000 11.37 0.00 44.60 2.52
504 1352 5.169667 GCATGCTGCCTGGTTACAGAAAA 62.170 47.826 11.37 0.00 44.60 2.29
543 1571 0.640768 GCGTAAAGTCTGCACTAGCG 59.359 55.000 0.00 0.00 46.23 4.26
555 1583 4.932799 TCTGCACTAGCGCTGTTTAATAAA 59.067 37.500 22.90 0.00 46.23 1.40
565 1593 3.676049 GCTGTTTAATAAACCCTGCTGCC 60.676 47.826 12.72 0.00 40.67 4.85
575 1603 1.243902 CCCTGCTGCCGTTTAAGAAA 58.756 50.000 0.00 0.00 0.00 2.52
576 1604 1.611491 CCCTGCTGCCGTTTAAGAAAA 59.389 47.619 0.00 0.00 0.00 2.29
577 1605 2.035321 CCCTGCTGCCGTTTAAGAAAAA 59.965 45.455 0.00 0.00 0.00 1.94
600 1633 1.205064 CTTCAACTGCAGTTCGCCG 59.795 57.895 28.97 17.68 41.33 6.46
627 1660 0.107017 AATTCCACCGGCCAGATCAG 60.107 55.000 0.00 0.00 0.00 2.90
632 1665 2.283529 ACCGGCCAGATCAGTCGTT 61.284 57.895 0.00 0.00 0.00 3.85
633 1666 1.811266 CCGGCCAGATCAGTCGTTG 60.811 63.158 2.24 0.00 0.00 4.10
643 1676 6.350194 GCCAGATCAGTCGTTGGATATGTATA 60.350 42.308 0.00 0.00 32.34 1.47
644 1677 7.631594 GCCAGATCAGTCGTTGGATATGTATAT 60.632 40.741 0.00 0.00 32.34 0.86
740 1953 2.075338 CAGCTCTGCCTCTTCTTTGTC 58.925 52.381 0.00 0.00 0.00 3.18
741 1954 1.977129 AGCTCTGCCTCTTCTTTGTCT 59.023 47.619 0.00 0.00 0.00 3.41
747 1964 3.999663 CTGCCTCTTCTTTGTCTTACTGG 59.000 47.826 0.00 0.00 0.00 4.00
751 1968 5.725362 CCTCTTCTTTGTCTTACTGGTAGG 58.275 45.833 0.00 0.00 0.00 3.18
757 1974 0.102663 GTCTTACTGGTAGGAGGCGC 59.897 60.000 0.00 0.00 0.00 6.53
761 1978 1.327690 TACTGGTAGGAGGCGCCAAG 61.328 60.000 31.54 15.48 40.02 3.61
792 2035 1.858041 CACTGTGCAGAAGCGACTG 59.142 57.895 6.17 8.44 46.23 3.51
831 2164 0.389426 GTTTGGCTTCATGCTGCAGG 60.389 55.000 17.12 8.18 42.39 4.85
853 2198 0.946221 GCAGTCAACAGACCTCACGG 60.946 60.000 0.00 0.00 32.62 4.94
865 2210 1.300233 CTCACGGCCGAGATAAGCC 60.300 63.158 35.90 0.00 46.17 4.35
899 2407 1.492993 GGAAGCTTCTGTCCCCCACT 61.493 60.000 25.05 0.00 0.00 4.00
906 2414 0.106167 TCTGTCCCCCACTATCGGAG 60.106 60.000 0.00 0.00 0.00 4.63
912 2420 1.139058 CCCCCACTATCGGAGTTCTTG 59.861 57.143 0.00 0.00 35.64 3.02
932 2440 0.523072 CACATAAGGCTGTGGTGTGC 59.477 55.000 8.28 0.00 42.26 4.57
933 2441 0.955428 ACATAAGGCTGTGGTGTGCG 60.955 55.000 5.32 0.00 0.00 5.34
934 2442 1.377202 ATAAGGCTGTGGTGTGCGG 60.377 57.895 0.00 0.00 0.00 5.69
976 2486 3.608506 CACATACACACTCTACTGCGTTC 59.391 47.826 0.00 0.00 0.00 3.95
985 2495 0.872021 CTACTGCGTTCGCATCTCCC 60.872 60.000 19.68 0.00 40.58 4.30
986 2496 1.600511 TACTGCGTTCGCATCTCCCA 61.601 55.000 19.68 0.00 40.58 4.37
1567 4212 3.181479 CCTTCCGTGGACTGATCGATTTA 60.181 47.826 0.00 0.00 0.00 1.40
1615 4856 4.724074 TTGAATACCGTGTACTGTAGGG 57.276 45.455 0.00 0.00 0.00 3.53
1729 4970 1.590932 GGCAGCACATCATCTTCGAT 58.409 50.000 0.00 0.00 0.00 3.59
1741 4982 2.506217 TTCGATCTCGTGTGCCGC 60.506 61.111 0.00 0.00 40.80 6.53
2180 5491 4.368808 CACAAACCGCCACGCTCG 62.369 66.667 0.00 0.00 0.00 5.03
2222 5568 1.886861 GCAGTGCCGTAACGTGTGAG 61.887 60.000 2.85 0.00 0.00 3.51
2244 5594 1.228154 GTTTGGTTCCGGCAGGTCT 60.228 57.895 1.81 0.00 39.05 3.85
2599 5949 1.220749 GCCAATGAGCGAGTACCCA 59.779 57.895 0.00 0.00 0.00 4.51
2621 5977 7.956315 ACCCATATACTGTGATACTCCTACAAT 59.044 37.037 0.00 0.00 0.00 2.71
2639 5995 3.071023 ACAATGGTAGTGCTGTGTGTACT 59.929 43.478 0.00 0.00 43.84 2.73
2663 6020 2.224209 GCGGGTGTGGTATAGCTTATGT 60.224 50.000 3.20 0.00 0.00 2.29
2673 6030 5.190677 GGTATAGCTTATGTGGTTTGTGGT 58.809 41.667 0.00 0.00 0.00 4.16
2677 6034 4.151883 AGCTTATGTGGTTTGTGGTGATT 58.848 39.130 0.00 0.00 0.00 2.57
2686 6043 3.191371 GGTTTGTGGTGATTGACATCTCC 59.809 47.826 0.00 0.00 41.70 3.71
2690 6047 1.628340 TGGTGATTGACATCTCCGGTT 59.372 47.619 0.00 0.00 43.52 4.44
2702 6059 6.105397 ACATCTCCGGTTAGTCAAGTTTTA 57.895 37.500 0.00 0.00 0.00 1.52
2706 6063 8.512138 CATCTCCGGTTAGTCAAGTTTTATTTT 58.488 33.333 0.00 0.00 0.00 1.82
2724 6081 4.911514 TTTTTAGTTGGGTCAGTCAAGC 57.088 40.909 0.00 0.00 0.00 4.01
2785 6143 0.397941 ATCGGCTACCATGGTCCATG 59.602 55.000 23.76 23.11 41.10 3.66
2797 6155 4.776322 TCCATGGCTTCGGGTGCG 62.776 66.667 6.96 0.00 0.00 5.34
2810 6168 3.818787 GTGCGCTCCCAAGCCATG 61.819 66.667 9.73 0.00 46.34 3.66
2811 6169 4.032452 TGCGCTCCCAAGCCATGA 62.032 61.111 9.73 0.00 46.34 3.07
2812 6170 3.512516 GCGCTCCCAAGCCATGAC 61.513 66.667 0.00 0.00 46.34 3.06
2813 6171 2.046023 CGCTCCCAAGCCATGACA 60.046 61.111 0.00 0.00 46.34 3.58
2814 6172 2.401766 CGCTCCCAAGCCATGACAC 61.402 63.158 0.00 0.00 46.34 3.67
2815 6173 1.303561 GCTCCCAAGCCATGACACA 60.304 57.895 0.00 0.00 43.10 3.72
2816 6174 1.589716 GCTCCCAAGCCATGACACAC 61.590 60.000 0.00 0.00 43.10 3.82
2817 6175 1.300971 CTCCCAAGCCATGACACACG 61.301 60.000 0.00 0.00 0.00 4.49
2818 6176 2.562912 CCAAGCCATGACACACGC 59.437 61.111 0.00 0.00 0.00 5.34
2819 6177 2.562912 CAAGCCATGACACACGCC 59.437 61.111 0.00 0.00 0.00 5.68
2820 6178 2.672996 AAGCCATGACACACGCCC 60.673 61.111 0.00 0.00 0.00 6.13
2821 6179 4.722700 AGCCATGACACACGCCCC 62.723 66.667 0.00 0.00 0.00 5.80
2822 6180 4.722700 GCCATGACACACGCCCCT 62.723 66.667 0.00 0.00 0.00 4.79
2823 6181 2.436646 CCATGACACACGCCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
2824 6182 2.347114 CATGACACACGCCCCTCA 59.653 61.111 0.00 0.00 0.00 3.86
2825 6183 1.302431 CATGACACACGCCCCTCAA 60.302 57.895 0.00 0.00 0.00 3.02
2826 6184 1.302511 ATGACACACGCCCCTCAAC 60.303 57.895 0.00 0.00 0.00 3.18
2827 6185 2.050836 ATGACACACGCCCCTCAACA 62.051 55.000 0.00 0.00 0.00 3.33
2828 6186 1.525077 GACACACGCCCCTCAACAA 60.525 57.895 0.00 0.00 0.00 2.83
2829 6187 1.782028 GACACACGCCCCTCAACAAC 61.782 60.000 0.00 0.00 0.00 3.32
2830 6188 1.821759 CACACGCCCCTCAACAACA 60.822 57.895 0.00 0.00 0.00 3.33
2831 6189 1.077357 ACACGCCCCTCAACAACAA 60.077 52.632 0.00 0.00 0.00 2.83
2832 6190 1.358759 CACGCCCCTCAACAACAAC 59.641 57.895 0.00 0.00 0.00 3.32
2833 6191 1.077357 ACGCCCCTCAACAACAACA 60.077 52.632 0.00 0.00 0.00 3.33
2834 6192 0.681564 ACGCCCCTCAACAACAACAA 60.682 50.000 0.00 0.00 0.00 2.83
2835 6193 0.457851 CGCCCCTCAACAACAACAAA 59.542 50.000 0.00 0.00 0.00 2.83
2844 6202 4.825422 TCAACAACAACAAAAAGCCATGA 58.175 34.783 0.00 0.00 0.00 3.07
2854 6212 2.774439 AAAGCCATGACACACGAAAC 57.226 45.000 0.00 0.00 0.00 2.78
2856 6214 1.896220 AGCCATGACACACGAAACAT 58.104 45.000 0.00 0.00 0.00 2.71
2857 6215 3.052455 AGCCATGACACACGAAACATA 57.948 42.857 0.00 0.00 0.00 2.29
2868 6226 5.086058 CACACGAAACATAATGTGTAAGGC 58.914 41.667 0.00 0.00 43.23 4.35
2869 6227 4.155280 ACACGAAACATAATGTGTAAGGCC 59.845 41.667 0.00 0.00 43.27 5.19
2872 6230 5.092781 CGAAACATAATGTGTAAGGCCAAC 58.907 41.667 5.01 2.84 41.14 3.77
2873 6231 5.106317 CGAAACATAATGTGTAAGGCCAACT 60.106 40.000 5.01 0.00 41.14 3.16
2874 6232 6.569610 CGAAACATAATGTGTAAGGCCAACTT 60.570 38.462 5.01 0.00 41.14 2.66
2875 6233 5.897377 ACATAATGTGTAAGGCCAACTTC 57.103 39.130 5.01 1.60 39.91 3.01
2876 6234 5.321102 ACATAATGTGTAAGGCCAACTTCA 58.679 37.500 5.01 7.27 39.91 3.02
2877 6235 5.183140 ACATAATGTGTAAGGCCAACTTCAC 59.817 40.000 5.01 7.53 39.91 3.18
2878 6236 1.975660 TGTGTAAGGCCAACTTCACC 58.024 50.000 5.01 0.00 40.64 4.02
2879 6237 0.872388 GTGTAAGGCCAACTTCACCG 59.128 55.000 5.01 0.00 40.64 4.94
2880 6238 0.887387 TGTAAGGCCAACTTCACCGC 60.887 55.000 5.01 0.00 40.64 5.68
2881 6239 1.669760 TAAGGCCAACTTCACCGCG 60.670 57.895 5.01 0.00 40.64 6.46
2882 6240 2.386064 TAAGGCCAACTTCACCGCGT 62.386 55.000 5.01 0.00 40.64 6.01
2883 6241 4.025401 GGCCAACTTCACCGCGTG 62.025 66.667 4.92 3.64 34.45 5.34
2884 6242 2.970324 GCCAACTTCACCGCGTGA 60.970 61.111 4.92 6.31 41.09 4.35
2885 6243 2.935955 CCAACTTCACCGCGTGAC 59.064 61.111 4.92 0.00 42.60 3.67
2886 6244 2.604174 CCAACTTCACCGCGTGACC 61.604 63.158 4.92 0.00 42.60 4.02
2887 6245 2.280592 AACTTCACCGCGTGACCC 60.281 61.111 4.92 0.00 42.60 4.46
2888 6246 3.819877 AACTTCACCGCGTGACCCC 62.820 63.158 4.92 0.00 42.60 4.95
2889 6247 4.308458 CTTCACCGCGTGACCCCA 62.308 66.667 4.92 0.00 42.60 4.96
2890 6248 3.818121 CTTCACCGCGTGACCCCAA 62.818 63.158 4.92 0.00 42.60 4.12
2891 6249 3.402095 TTCACCGCGTGACCCCAAA 62.402 57.895 4.92 0.00 42.60 3.28
2892 6250 3.656045 CACCGCGTGACCCCAAAC 61.656 66.667 4.92 0.00 35.23 2.93
2895 6253 4.973055 CGCGTGACCCCAAACGGA 62.973 66.667 0.00 0.00 40.12 4.69
2896 6254 3.351416 GCGTGACCCCAAACGGAC 61.351 66.667 0.00 0.00 40.12 4.79
2897 6255 3.039588 CGTGACCCCAAACGGACG 61.040 66.667 0.00 0.00 36.17 4.79
2898 6256 2.109593 GTGACCCCAAACGGACGT 59.890 61.111 0.00 0.00 0.00 4.34
2899 6257 1.957695 GTGACCCCAAACGGACGTC 60.958 63.158 7.13 7.13 0.00 4.34
2900 6258 2.357881 GACCCCAAACGGACGTCC 60.358 66.667 25.28 25.28 0.00 4.79
2913 6271 4.303993 CGTCCGGTTTGGTCGGGT 62.304 66.667 0.00 0.00 46.78 5.28
2914 6272 2.111669 GTCCGGTTTGGTCGGGTT 59.888 61.111 0.00 0.00 46.78 4.11
2915 6273 1.526686 GTCCGGTTTGGTCGGGTTT 60.527 57.895 0.00 0.00 46.78 3.27
2916 6274 1.102809 GTCCGGTTTGGTCGGGTTTT 61.103 55.000 0.00 0.00 46.78 2.43
2917 6275 1.102222 TCCGGTTTGGTCGGGTTTTG 61.102 55.000 0.00 0.00 46.78 2.44
2918 6276 1.385756 CCGGTTTGGTCGGGTTTTGT 61.386 55.000 0.00 0.00 43.45 2.83
2919 6277 0.029700 CGGTTTGGTCGGGTTTTGTC 59.970 55.000 0.00 0.00 0.00 3.18
2920 6278 1.395635 GGTTTGGTCGGGTTTTGTCT 58.604 50.000 0.00 0.00 0.00 3.41
2921 6279 1.335810 GGTTTGGTCGGGTTTTGTCTC 59.664 52.381 0.00 0.00 0.00 3.36
2922 6280 2.294979 GTTTGGTCGGGTTTTGTCTCT 58.705 47.619 0.00 0.00 0.00 3.10
2923 6281 2.686405 GTTTGGTCGGGTTTTGTCTCTT 59.314 45.455 0.00 0.00 0.00 2.85
2924 6282 2.721425 TGGTCGGGTTTTGTCTCTTT 57.279 45.000 0.00 0.00 0.00 2.52
2925 6283 2.294074 TGGTCGGGTTTTGTCTCTTTG 58.706 47.619 0.00 0.00 0.00 2.77
2926 6284 1.607148 GGTCGGGTTTTGTCTCTTTGG 59.393 52.381 0.00 0.00 0.00 3.28
2927 6285 1.607148 GTCGGGTTTTGTCTCTTTGGG 59.393 52.381 0.00 0.00 0.00 4.12
2928 6286 1.491332 TCGGGTTTTGTCTCTTTGGGA 59.509 47.619 0.00 0.00 0.00 4.37
2929 6287 2.107552 TCGGGTTTTGTCTCTTTGGGAT 59.892 45.455 0.00 0.00 0.00 3.85
2930 6288 2.228822 CGGGTTTTGTCTCTTTGGGATG 59.771 50.000 0.00 0.00 0.00 3.51
2931 6289 2.562738 GGGTTTTGTCTCTTTGGGATGG 59.437 50.000 0.00 0.00 0.00 3.51
2932 6290 2.029020 GGTTTTGTCTCTTTGGGATGGC 60.029 50.000 0.00 0.00 0.00 4.40
2933 6291 2.627699 GTTTTGTCTCTTTGGGATGGCA 59.372 45.455 0.00 0.00 0.00 4.92
2934 6292 2.673775 TTGTCTCTTTGGGATGGCAA 57.326 45.000 0.00 0.00 0.00 4.52
2935 6293 2.905415 TGTCTCTTTGGGATGGCAAT 57.095 45.000 0.00 0.00 0.00 3.56
2936 6294 4.314522 TTGTCTCTTTGGGATGGCAATA 57.685 40.909 0.00 0.00 0.00 1.90
2937 6295 3.889815 TGTCTCTTTGGGATGGCAATAG 58.110 45.455 0.00 0.00 0.00 1.73
2938 6296 3.217626 GTCTCTTTGGGATGGCAATAGG 58.782 50.000 0.00 0.00 0.00 2.57
2939 6297 2.852449 TCTCTTTGGGATGGCAATAGGT 59.148 45.455 0.00 0.00 0.00 3.08
2940 6298 3.269381 TCTCTTTGGGATGGCAATAGGTT 59.731 43.478 0.00 0.00 0.00 3.50
2941 6299 3.631250 TCTTTGGGATGGCAATAGGTTC 58.369 45.455 0.00 0.00 0.00 3.62
2942 6300 2.051334 TTGGGATGGCAATAGGTTCG 57.949 50.000 0.00 0.00 0.00 3.95
2943 6301 0.916086 TGGGATGGCAATAGGTTCGT 59.084 50.000 0.00 0.00 0.00 3.85
2944 6302 1.134220 TGGGATGGCAATAGGTTCGTC 60.134 52.381 0.00 0.00 0.00 4.20
2945 6303 1.141053 GGGATGGCAATAGGTTCGTCT 59.859 52.381 0.00 0.00 0.00 4.18
2946 6304 2.367567 GGGATGGCAATAGGTTCGTCTA 59.632 50.000 0.00 0.00 0.00 2.59
2947 6305 3.008049 GGGATGGCAATAGGTTCGTCTAT 59.992 47.826 0.00 0.00 0.00 1.98
2948 6306 3.997021 GGATGGCAATAGGTTCGTCTATG 59.003 47.826 0.00 0.00 31.01 2.23
2949 6307 4.503296 GGATGGCAATAGGTTCGTCTATGT 60.503 45.833 0.00 0.00 31.01 2.29
2950 6308 4.054780 TGGCAATAGGTTCGTCTATGTC 57.945 45.455 0.00 0.00 31.01 3.06
2951 6309 3.181469 TGGCAATAGGTTCGTCTATGTCC 60.181 47.826 0.00 0.00 31.01 4.02
2952 6310 3.181469 GGCAATAGGTTCGTCTATGTCCA 60.181 47.826 0.00 0.00 31.01 4.02
2953 6311 3.802685 GCAATAGGTTCGTCTATGTCCAC 59.197 47.826 0.00 0.00 31.01 4.02
2954 6312 4.441634 GCAATAGGTTCGTCTATGTCCACT 60.442 45.833 0.00 0.00 31.01 4.00
2955 6313 5.661458 CAATAGGTTCGTCTATGTCCACTT 58.339 41.667 0.00 0.00 31.01 3.16
2956 6314 3.870633 AGGTTCGTCTATGTCCACTTC 57.129 47.619 0.00 0.00 0.00 3.01
2957 6315 3.432378 AGGTTCGTCTATGTCCACTTCT 58.568 45.455 0.00 0.00 0.00 2.85
2958 6316 4.597004 AGGTTCGTCTATGTCCACTTCTA 58.403 43.478 0.00 0.00 0.00 2.10
2959 6317 5.202004 AGGTTCGTCTATGTCCACTTCTAT 58.798 41.667 0.00 0.00 0.00 1.98
2960 6318 5.299782 AGGTTCGTCTATGTCCACTTCTATC 59.700 44.000 0.00 0.00 0.00 2.08
2961 6319 5.507650 GGTTCGTCTATGTCCACTTCTATCC 60.508 48.000 0.00 0.00 0.00 2.59
2962 6320 3.813724 TCGTCTATGTCCACTTCTATCCG 59.186 47.826 0.00 0.00 0.00 4.18
2963 6321 3.564644 CGTCTATGTCCACTTCTATCCGT 59.435 47.826 0.00 0.00 0.00 4.69
2964 6322 4.036498 CGTCTATGTCCACTTCTATCCGTT 59.964 45.833 0.00 0.00 0.00 4.44
2965 6323 5.282510 GTCTATGTCCACTTCTATCCGTTG 58.717 45.833 0.00 0.00 0.00 4.10
2966 6324 3.543680 ATGTCCACTTCTATCCGTTGG 57.456 47.619 0.00 0.00 0.00 3.77
2967 6325 2.531771 TGTCCACTTCTATCCGTTGGA 58.468 47.619 0.00 0.00 35.55 3.53
2968 6326 3.104512 TGTCCACTTCTATCCGTTGGAT 58.895 45.455 3.49 3.49 45.40 3.41
2969 6327 3.132289 TGTCCACTTCTATCCGTTGGATC 59.868 47.826 0.71 0.00 42.11 3.36
2970 6328 2.361119 TCCACTTCTATCCGTTGGATCG 59.639 50.000 0.71 0.00 42.11 3.69
2971 6329 2.100916 CCACTTCTATCCGTTGGATCGT 59.899 50.000 0.71 0.00 42.11 3.73
2972 6330 3.116300 CACTTCTATCCGTTGGATCGTG 58.884 50.000 0.71 3.04 42.11 4.35
2973 6331 2.128035 CTTCTATCCGTTGGATCGTGC 58.872 52.381 0.71 0.00 42.11 5.34
2974 6332 0.030235 TCTATCCGTTGGATCGTGCG 59.970 55.000 0.71 0.00 42.11 5.34
2975 6333 0.248907 CTATCCGTTGGATCGTGCGT 60.249 55.000 0.71 0.00 42.11 5.24
2976 6334 0.526739 TATCCGTTGGATCGTGCGTG 60.527 55.000 0.71 0.00 42.11 5.34
2977 6335 4.147322 CCGTTGGATCGTGCGTGC 62.147 66.667 0.00 0.00 0.00 5.34
2978 6336 4.483683 CGTTGGATCGTGCGTGCG 62.484 66.667 0.00 0.00 0.00 5.34
2979 6337 3.411351 GTTGGATCGTGCGTGCGT 61.411 61.111 1.25 0.00 0.00 5.24
2980 6338 3.109547 TTGGATCGTGCGTGCGTC 61.110 61.111 1.25 0.00 0.00 5.19
2983 6341 3.838795 GATCGTGCGTGCGTCCAC 61.839 66.667 1.25 0.00 38.62 4.02
3106 6464 1.193874 GTTGCAGAACGGACTAAACGG 59.806 52.381 0.00 0.00 35.23 4.44
3108 6466 0.947180 GCAGAACGGACTAAACGGCA 60.947 55.000 0.00 0.00 35.23 5.69
3170 6528 4.742201 CCAGGGGCTGACGTGACG 62.742 72.222 2.24 2.24 32.44 4.35
3280 6661 2.209064 ATAACGCGCGACTGTGAGGT 62.209 55.000 39.36 7.53 0.00 3.85
3313 6694 3.062466 GGTTGCCCGAGGGAAAGC 61.062 66.667 14.72 14.72 43.17 3.51
3587 7151 5.009610 ACACACTGATAATTGACGCCTTTTT 59.990 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.353323 ACACGTACAGCGAGTGAGATA 58.647 47.619 5.05 0.00 42.45 1.98
23 24 1.799544 TACACGTACAGCGAGTGAGA 58.200 50.000 5.05 0.00 43.72 3.27
30 31 1.631072 GCTGCATACACGTACAGCG 59.369 57.895 9.81 0.00 45.23 5.18
61 62 2.296190 AGATTTTCTTTGGACCAACCGC 59.704 45.455 6.36 0.00 42.61 5.68
70 71 3.874392 ATCGGGCAAGATTTTCTTTGG 57.126 42.857 0.00 0.00 33.78 3.28
72 73 5.213891 ACAAATCGGGCAAGATTTTCTTT 57.786 34.783 14.70 1.76 45.45 2.52
97 98 3.624861 GGGGAGAAATATCATATGCGCAG 59.375 47.826 18.32 1.66 0.00 5.18
100 101 4.220693 TGGGGGAGAAATATCATATGCG 57.779 45.455 0.00 0.00 0.00 4.73
126 127 0.248417 CTCATCTGTCTGTCTCCGCG 60.248 60.000 0.00 0.00 0.00 6.46
137 139 1.137872 GGTTCTCGCCATCTCATCTGT 59.862 52.381 0.00 0.00 0.00 3.41
142 144 1.982395 ACGGGTTCTCGCCATCTCA 60.982 57.895 0.00 0.00 0.00 3.27
143 145 1.519455 CACGGGTTCTCGCCATCTC 60.519 63.158 0.00 0.00 0.00 2.75
144 146 2.579201 CACGGGTTCTCGCCATCT 59.421 61.111 0.00 0.00 0.00 2.90
163 191 4.988598 AACTGCCCAGTGCCGTCG 62.989 66.667 1.07 0.00 41.58 5.12
207 236 4.179579 GCGATCGGCCAACCAAGC 62.180 66.667 18.30 0.00 34.57 4.01
216 245 2.586357 GACAAGGGAGCGATCGGC 60.586 66.667 18.30 9.32 44.05 5.54
218 247 2.956964 GCGACAAGGGAGCGATCG 60.957 66.667 11.69 11.69 35.91 3.69
277 306 2.122768 GATCTTGGGGAGTGTGGATCT 58.877 52.381 0.00 0.00 0.00 2.75
292 322 4.025040 TGCACAAACAGATCCAGATCTT 57.975 40.909 7.44 0.00 45.31 2.40
309 339 5.238214 AGTGAACTCTCTTCAAGAAATGCAC 59.762 40.000 0.00 0.00 32.23 4.57
310 340 5.371526 AGTGAACTCTCTTCAAGAAATGCA 58.628 37.500 0.00 0.00 32.23 3.96
311 341 5.938438 AGTGAACTCTCTTCAAGAAATGC 57.062 39.130 0.00 0.00 32.23 3.56
332 362 4.303086 ACATACGACAAGGGAACGATAG 57.697 45.455 0.00 0.00 46.19 2.08
334 364 4.583489 AGATACATACGACAAGGGAACGAT 59.417 41.667 0.00 0.00 0.00 3.73
335 365 3.949754 AGATACATACGACAAGGGAACGA 59.050 43.478 0.00 0.00 0.00 3.85
336 366 4.303086 AGATACATACGACAAGGGAACG 57.697 45.455 0.00 0.00 0.00 3.95
338 368 9.321562 GATAAAAAGATACATACGACAAGGGAA 57.678 33.333 0.00 0.00 0.00 3.97
342 372 9.831054 GAACGATAAAAAGATACATACGACAAG 57.169 33.333 0.00 0.00 0.00 3.16
344 374 7.436080 GGGAACGATAAAAAGATACATACGACA 59.564 37.037 0.00 0.00 0.00 4.35
345 375 7.650903 AGGGAACGATAAAAAGATACATACGAC 59.349 37.037 0.00 0.00 0.00 4.34
346 376 7.719483 AGGGAACGATAAAAAGATACATACGA 58.281 34.615 0.00 0.00 0.00 3.43
347 377 7.941795 AGGGAACGATAAAAAGATACATACG 57.058 36.000 0.00 0.00 0.00 3.06
349 379 9.321562 GACAAGGGAACGATAAAAAGATACATA 57.678 33.333 0.00 0.00 0.00 2.29
350 380 7.011109 CGACAAGGGAACGATAAAAAGATACAT 59.989 37.037 0.00 0.00 0.00 2.29
351 381 6.311935 CGACAAGGGAACGATAAAAAGATACA 59.688 38.462 0.00 0.00 0.00 2.29
354 384 4.094442 GCGACAAGGGAACGATAAAAAGAT 59.906 41.667 0.00 0.00 0.00 2.40
360 390 2.276201 CATGCGACAAGGGAACGATAA 58.724 47.619 0.00 0.00 0.00 1.75
361 391 1.206132 ACATGCGACAAGGGAACGATA 59.794 47.619 0.00 0.00 0.00 2.92
362 392 0.036388 ACATGCGACAAGGGAACGAT 60.036 50.000 0.00 0.00 0.00 3.73
364 394 1.593006 GATACATGCGACAAGGGAACG 59.407 52.381 0.00 0.00 0.00 3.95
365 395 1.593006 CGATACATGCGACAAGGGAAC 59.407 52.381 0.00 0.00 0.00 3.62
366 396 1.478916 TCGATACATGCGACAAGGGAA 59.521 47.619 0.00 0.00 32.09 3.97
367 397 1.107945 TCGATACATGCGACAAGGGA 58.892 50.000 0.00 0.00 32.09 4.20
368 398 3.659850 TCGATACATGCGACAAGGG 57.340 52.632 0.00 0.00 32.09 3.95
374 404 1.368850 CGAGCGTCGATACATGCGA 60.369 57.895 0.00 0.00 43.74 5.10
378 408 1.015109 AGACACGAGCGTCGATACAT 58.985 50.000 13.06 0.00 43.74 2.29
379 409 0.096454 CAGACACGAGCGTCGATACA 59.904 55.000 13.06 0.00 43.74 2.29
380 410 0.589229 CCAGACACGAGCGTCGATAC 60.589 60.000 13.06 5.04 43.74 2.24
381 411 1.719709 CCAGACACGAGCGTCGATA 59.280 57.895 13.06 0.00 43.74 2.92
382 412 2.485582 CCAGACACGAGCGTCGAT 59.514 61.111 13.06 0.00 43.74 3.59
385 415 2.355837 TTGCCAGACACGAGCGTC 60.356 61.111 0.00 0.00 36.08 5.19
386 416 2.356313 CTTGCCAGACACGAGCGT 60.356 61.111 0.00 0.00 0.00 5.07
388 418 3.426568 GGCTTGCCAGACACGAGC 61.427 66.667 6.79 0.00 42.79 5.03
389 419 2.031012 TGGCTTGCCAGACACGAG 59.969 61.111 10.65 0.00 30.45 4.18
390 420 2.031012 CTGGCTTGCCAGACACGA 59.969 61.111 31.48 0.71 39.96 4.35
392 422 1.072159 AGACTGGCTTGCCAGACAC 59.928 57.895 38.49 28.14 39.96 3.67
393 423 1.071987 CAGACTGGCTTGCCAGACA 59.928 57.895 38.49 7.76 39.96 3.41
394 424 1.673665 CCAGACTGGCTTGCCAGAC 60.674 63.158 38.49 32.92 39.96 3.51
398 428 0.752658 AAAAACCAGACTGGCTTGCC 59.247 50.000 21.95 4.43 42.67 4.52
405 435 3.140325 TCCTAGCCAAAAACCAGACTG 57.860 47.619 0.00 0.00 0.00 3.51
406 436 3.876309 TTCCTAGCCAAAAACCAGACT 57.124 42.857 0.00 0.00 0.00 3.24
409 439 4.559153 CACATTTCCTAGCCAAAAACCAG 58.441 43.478 0.00 0.00 0.00 4.00
420 450 2.636830 CTGACCAGCCACATTTCCTAG 58.363 52.381 0.00 0.00 0.00 3.02
422 452 0.038744 CCTGACCAGCCACATTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
423 453 0.967380 CCCTGACCAGCCACATTTCC 60.967 60.000 0.00 0.00 0.00 3.13
424 454 0.251341 ACCCTGACCAGCCACATTTC 60.251 55.000 0.00 0.00 0.00 2.17
428 458 2.772191 ACACCCTGACCAGCCACA 60.772 61.111 0.00 0.00 0.00 4.17
429 459 2.129555 ATCACACCCTGACCAGCCAC 62.130 60.000 0.00 0.00 0.00 5.01
432 462 1.168714 GAAATCACACCCTGACCAGC 58.831 55.000 0.00 0.00 0.00 4.85
433 463 1.001974 TCGAAATCACACCCTGACCAG 59.998 52.381 0.00 0.00 0.00 4.00
435 465 2.178912 TTCGAAATCACACCCTGACC 57.821 50.000 0.00 0.00 0.00 4.02
436 466 4.003648 AGAATTCGAAATCACACCCTGAC 58.996 43.478 15.31 0.00 0.00 3.51
437 467 4.002982 CAGAATTCGAAATCACACCCTGA 58.997 43.478 15.31 0.00 0.00 3.86
438 468 4.002982 TCAGAATTCGAAATCACACCCTG 58.997 43.478 15.31 4.10 0.00 4.45
439 469 4.286297 TCAGAATTCGAAATCACACCCT 57.714 40.909 15.31 0.00 0.00 4.34
441 471 5.862924 TCTTCAGAATTCGAAATCACACC 57.137 39.130 15.31 0.00 0.00 4.16
442 472 6.481984 GGATCTTCAGAATTCGAAATCACAC 58.518 40.000 15.31 0.47 0.00 3.82
444 474 5.292101 ACGGATCTTCAGAATTCGAAATCAC 59.708 40.000 15.31 1.67 0.00 3.06
445 475 5.419542 ACGGATCTTCAGAATTCGAAATCA 58.580 37.500 15.31 0.00 0.00 2.57
449 1297 7.676338 GCATAAAACGGATCTTCAGAATTCGAA 60.676 37.037 0.00 0.00 0.00 3.71
492 1340 2.566913 TCAGCGCTTTTTCTGTAACCA 58.433 42.857 7.50 0.00 0.00 3.67
493 1341 3.003378 ACTTCAGCGCTTTTTCTGTAACC 59.997 43.478 7.50 0.00 0.00 2.85
495 1343 4.893424 AACTTCAGCGCTTTTTCTGTAA 57.107 36.364 7.50 0.00 0.00 2.41
496 1344 4.095782 ACAAACTTCAGCGCTTTTTCTGTA 59.904 37.500 7.50 0.00 0.00 2.74
497 1345 3.119495 ACAAACTTCAGCGCTTTTTCTGT 60.119 39.130 7.50 4.43 0.00 3.41
498 1346 3.438360 ACAAACTTCAGCGCTTTTTCTG 58.562 40.909 7.50 3.71 0.00 3.02
499 1347 3.782889 ACAAACTTCAGCGCTTTTTCT 57.217 38.095 7.50 0.00 0.00 2.52
500 1348 3.000222 CCAACAAACTTCAGCGCTTTTTC 60.000 43.478 7.50 0.00 0.00 2.29
502 1350 2.539476 CCAACAAACTTCAGCGCTTTT 58.461 42.857 7.50 2.31 0.00 2.27
503 1351 1.802508 GCCAACAAACTTCAGCGCTTT 60.803 47.619 7.50 0.00 0.00 3.51
504 1352 0.249031 GCCAACAAACTTCAGCGCTT 60.249 50.000 7.50 0.00 0.00 4.68
506 1354 2.010817 CGCCAACAAACTTCAGCGC 61.011 57.895 0.00 0.00 36.89 5.92
507 1355 2.010817 GCGCCAACAAACTTCAGCG 61.011 57.895 0.00 0.00 45.91 5.18
508 1356 2.010817 CGCGCCAACAAACTTCAGC 61.011 57.895 0.00 0.00 0.00 4.26
509 1357 0.584396 TACGCGCCAACAAACTTCAG 59.416 50.000 5.73 0.00 0.00 3.02
510 1358 1.015109 TTACGCGCCAACAAACTTCA 58.985 45.000 5.73 0.00 0.00 3.02
511 1359 2.041244 CTTTACGCGCCAACAAACTTC 58.959 47.619 5.73 0.00 0.00 3.01
543 1571 3.511699 GCAGCAGGGTTTATTAAACAGC 58.488 45.455 18.41 17.26 43.15 4.40
555 1583 0.109723 TTCTTAAACGGCAGCAGGGT 59.890 50.000 0.00 0.00 0.00 4.34
565 1593 8.892905 GCAGTTGAAGAGTATTTTTCTTAAACG 58.107 33.333 8.73 6.30 45.02 3.60
575 1603 4.083802 GCGAACTGCAGTTGAAGAGTATTT 60.084 41.667 35.67 7.99 45.45 1.40
576 1604 3.433615 GCGAACTGCAGTTGAAGAGTATT 59.566 43.478 35.67 8.58 45.45 1.89
577 1605 2.996621 GCGAACTGCAGTTGAAGAGTAT 59.003 45.455 35.67 9.42 45.45 2.12
600 1633 1.712018 GCCGGTGGAATTCTAACGCC 61.712 60.000 22.41 9.21 36.15 5.68
604 1637 1.281419 TCTGGCCGGTGGAATTCTAA 58.719 50.000 12.43 0.00 0.00 2.10
660 1873 2.568623 AATTGGTCAGCGAACCTCTT 57.431 45.000 11.22 3.21 40.20 2.85
665 1878 5.636837 TGCTATTTTAATTGGTCAGCGAAC 58.363 37.500 0.00 0.00 0.00 3.95
671 1884 7.775053 AGGAGTTTGCTATTTTAATTGGTCA 57.225 32.000 0.00 0.00 0.00 4.02
728 1941 5.480772 TCCTACCAGTAAGACAAAGAAGAGG 59.519 44.000 0.00 0.00 0.00 3.69
738 1951 0.102663 GCGCCTCCTACCAGTAAGAC 59.897 60.000 0.00 0.00 0.00 3.01
740 1953 1.327690 TGGCGCCTCCTACCAGTAAG 61.328 60.000 29.70 0.00 35.26 2.34
741 1954 0.905809 TTGGCGCCTCCTACCAGTAA 60.906 55.000 29.70 6.16 34.28 2.24
747 1964 2.182842 CATGCTTGGCGCCTCCTAC 61.183 63.158 29.70 13.02 38.05 3.18
751 1968 1.727511 TAATGCATGCTTGGCGCCTC 61.728 55.000 29.70 16.95 38.05 4.70
780 2023 1.325943 GCTACAATCAGTCGCTTCTGC 59.674 52.381 0.99 0.00 36.12 4.26
792 2035 6.583806 CCAAACAGTCATTCAAAGCTACAATC 59.416 38.462 0.00 0.00 0.00 2.67
831 2164 0.032130 TGAGGTCTGTTGACTGCGTC 59.968 55.000 2.32 2.32 42.54 5.19
853 2198 1.300233 CTCCGTGGCTTATCTCGGC 60.300 63.158 0.00 0.00 42.28 5.54
865 2210 0.512952 CTTCCTGCGAAAACTCCGTG 59.487 55.000 0.00 0.00 0.00 4.94
867 2212 1.497722 GCTTCCTGCGAAAACTCCG 59.502 57.895 0.00 0.00 0.00 4.63
899 2407 4.693283 CCTTATGTGCAAGAACTCCGATA 58.307 43.478 0.00 0.00 0.00 2.92
906 2414 3.207474 CACAGCCTTATGTGCAAGAAC 57.793 47.619 0.00 0.00 43.69 3.01
935 2443 3.197790 CAAGCTGGCGATCACCGG 61.198 66.667 0.00 0.00 39.04 5.28
985 2495 0.718343 GCAGCAGTAGAAAGACGCTG 59.282 55.000 5.36 5.36 43.52 5.18
986 2496 0.605589 AGCAGCAGTAGAAAGACGCT 59.394 50.000 0.00 0.00 32.11 5.07
1591 4828 5.287226 CCTACAGTACACGGTATTCAATCC 58.713 45.833 0.00 0.00 0.00 3.01
1741 4982 3.680789 GAGGTCGTTGAACTTGTTGTTG 58.319 45.455 0.00 0.00 39.30 3.33
2180 5491 1.276145 GCTCGTCAAGTGACACGGAC 61.276 60.000 18.08 18.08 44.99 4.79
2222 5568 1.515521 CCTGCCGGAACCAAACAGAC 61.516 60.000 5.05 0.00 0.00 3.51
2599 5949 8.958060 ACCATTGTAGGAGTATCACAGTATAT 57.042 34.615 0.00 0.00 36.25 0.86
2621 5977 2.224185 CCAAGTACACACAGCACTACCA 60.224 50.000 0.00 0.00 0.00 3.25
2639 5995 1.222387 GCTATACCACACCCGCCAA 59.778 57.895 0.00 0.00 0.00 4.52
2663 6020 3.820467 GAGATGTCAATCACCACAAACCA 59.180 43.478 0.00 0.00 35.03 3.67
2673 6030 3.767131 TGACTAACCGGAGATGTCAATCA 59.233 43.478 9.46 0.00 35.15 2.57
2677 6034 3.162666 ACTTGACTAACCGGAGATGTCA 58.837 45.455 9.46 13.91 36.10 3.58
2702 6059 5.140454 AGCTTGACTGACCCAACTAAAAAT 58.860 37.500 0.00 0.00 0.00 1.82
2706 6063 3.644265 TGTAGCTTGACTGACCCAACTAA 59.356 43.478 0.00 0.00 0.00 2.24
2724 6081 6.732531 TCAACAGATCTTGCAATCTTGTAG 57.267 37.500 0.00 0.00 33.68 2.74
2762 6119 1.541233 GGACCATGGTAGCCGATGAAG 60.541 57.143 19.80 0.00 0.00 3.02
2767 6124 1.829456 CATGGACCATGGTAGCCGA 59.171 57.895 24.65 2.92 38.11 5.54
2799 6157 1.302431 CGTGTGTCATGGCTTGGGA 60.302 57.895 0.00 0.00 0.00 4.37
2801 6159 2.562912 GCGTGTGTCATGGCTTGG 59.437 61.111 0.00 0.00 0.00 3.61
2802 6160 2.562912 GGCGTGTGTCATGGCTTG 59.437 61.111 0.00 0.00 41.74 4.01
2803 6161 2.672996 GGGCGTGTGTCATGGCTT 60.673 61.111 13.50 0.00 43.95 4.35
2804 6162 4.722700 GGGGCGTGTGTCATGGCT 62.723 66.667 13.50 0.00 43.95 4.75
2805 6163 4.722700 AGGGGCGTGTGTCATGGC 62.723 66.667 6.92 6.92 43.79 4.40
2806 6164 2.436646 GAGGGGCGTGTGTCATGG 60.437 66.667 0.00 0.00 0.00 3.66
2807 6165 1.302431 TTGAGGGGCGTGTGTCATG 60.302 57.895 0.00 0.00 0.00 3.07
2808 6166 1.302511 GTTGAGGGGCGTGTGTCAT 60.303 57.895 0.00 0.00 0.00 3.06
2809 6167 2.110213 GTTGAGGGGCGTGTGTCA 59.890 61.111 0.00 0.00 0.00 3.58
2810 6168 1.525077 TTGTTGAGGGGCGTGTGTC 60.525 57.895 0.00 0.00 0.00 3.67
2811 6169 1.822186 GTTGTTGAGGGGCGTGTGT 60.822 57.895 0.00 0.00 0.00 3.72
2812 6170 1.380403 TTGTTGTTGAGGGGCGTGTG 61.380 55.000 0.00 0.00 0.00 3.82
2813 6171 1.077357 TTGTTGTTGAGGGGCGTGT 60.077 52.632 0.00 0.00 0.00 4.49
2814 6172 1.358759 GTTGTTGTTGAGGGGCGTG 59.641 57.895 0.00 0.00 0.00 5.34
2815 6173 0.681564 TTGTTGTTGTTGAGGGGCGT 60.682 50.000 0.00 0.00 0.00 5.68
2816 6174 0.457851 TTTGTTGTTGTTGAGGGGCG 59.542 50.000 0.00 0.00 0.00 6.13
2817 6175 2.682155 TTTTGTTGTTGTTGAGGGGC 57.318 45.000 0.00 0.00 0.00 5.80
2818 6176 2.935849 GCTTTTTGTTGTTGTTGAGGGG 59.064 45.455 0.00 0.00 0.00 4.79
2819 6177 2.935849 GGCTTTTTGTTGTTGTTGAGGG 59.064 45.455 0.00 0.00 0.00 4.30
2820 6178 3.594134 TGGCTTTTTGTTGTTGTTGAGG 58.406 40.909 0.00 0.00 0.00 3.86
2821 6179 4.869297 TCATGGCTTTTTGTTGTTGTTGAG 59.131 37.500 0.00 0.00 0.00 3.02
2822 6180 4.629200 GTCATGGCTTTTTGTTGTTGTTGA 59.371 37.500 0.00 0.00 0.00 3.18
2823 6181 4.391216 TGTCATGGCTTTTTGTTGTTGTTG 59.609 37.500 0.00 0.00 0.00 3.33
2824 6182 4.391523 GTGTCATGGCTTTTTGTTGTTGTT 59.608 37.500 0.00 0.00 0.00 2.83
2825 6183 3.932089 GTGTCATGGCTTTTTGTTGTTGT 59.068 39.130 0.00 0.00 0.00 3.32
2826 6184 3.931468 TGTGTCATGGCTTTTTGTTGTTG 59.069 39.130 0.00 0.00 0.00 3.33
2827 6185 3.932089 GTGTGTCATGGCTTTTTGTTGTT 59.068 39.130 0.00 0.00 0.00 2.83
2828 6186 3.520569 GTGTGTCATGGCTTTTTGTTGT 58.479 40.909 0.00 0.00 0.00 3.32
2829 6187 2.535166 CGTGTGTCATGGCTTTTTGTTG 59.465 45.455 0.00 0.00 0.00 3.33
2830 6188 2.425312 TCGTGTGTCATGGCTTTTTGTT 59.575 40.909 0.00 0.00 0.00 2.83
2831 6189 2.020720 TCGTGTGTCATGGCTTTTTGT 58.979 42.857 0.00 0.00 0.00 2.83
2832 6190 2.772568 TCGTGTGTCATGGCTTTTTG 57.227 45.000 0.00 0.00 0.00 2.44
2833 6191 3.119316 TGTTTCGTGTGTCATGGCTTTTT 60.119 39.130 0.00 0.00 0.00 1.94
2834 6192 2.425312 TGTTTCGTGTGTCATGGCTTTT 59.575 40.909 0.00 0.00 0.00 2.27
2835 6193 2.020720 TGTTTCGTGTGTCATGGCTTT 58.979 42.857 0.00 0.00 0.00 3.51
2854 6212 5.393027 GGTGAAGTTGGCCTTACACATTATG 60.393 44.000 3.32 0.00 35.07 1.90
2856 6214 4.076394 GGTGAAGTTGGCCTTACACATTA 58.924 43.478 3.32 0.00 35.07 1.90
2857 6215 2.890945 GGTGAAGTTGGCCTTACACATT 59.109 45.455 3.32 0.00 35.07 2.71
2867 6225 2.970324 TCACGCGGTGAAGTTGGC 60.970 61.111 12.47 0.00 39.78 4.52
2868 6226 2.604174 GGTCACGCGGTGAAGTTGG 61.604 63.158 12.47 0.00 44.49 3.77
2869 6227 2.604174 GGGTCACGCGGTGAAGTTG 61.604 63.158 12.47 0.00 44.49 3.16
2872 6230 3.818121 TTGGGGTCACGCGGTGAAG 62.818 63.158 12.47 0.00 44.49 3.02
2873 6231 3.402095 TTTGGGGTCACGCGGTGAA 62.402 57.895 12.47 0.00 44.49 3.18
2874 6232 3.862991 TTTGGGGTCACGCGGTGA 61.863 61.111 12.47 9.29 40.50 4.02
2875 6233 3.656045 GTTTGGGGTCACGCGGTG 61.656 66.667 12.47 6.71 34.45 4.94
2878 6236 4.973055 TCCGTTTGGGGTCACGCG 62.973 66.667 3.53 3.53 34.98 6.01
2879 6237 3.351416 GTCCGTTTGGGGTCACGC 61.351 66.667 0.00 0.00 34.98 5.34
2880 6238 3.039588 CGTCCGTTTGGGGTCACG 61.040 66.667 0.00 0.00 36.01 4.35
2881 6239 1.957695 GACGTCCGTTTGGGGTCAC 60.958 63.158 3.51 0.00 38.33 3.67
2882 6240 2.422591 GACGTCCGTTTGGGGTCA 59.577 61.111 3.51 0.00 38.33 4.02
2883 6241 2.357881 GGACGTCCGTTTGGGGTC 60.358 66.667 20.85 0.00 37.97 4.46
2893 6251 2.735857 CGACCAAACCGGACGTCC 60.736 66.667 25.28 25.28 46.16 4.79
2899 6257 1.360911 CAAAACCCGACCAAACCGG 59.639 57.895 0.00 0.00 46.10 5.28
2900 6258 0.029700 GACAAAACCCGACCAAACCG 59.970 55.000 0.00 0.00 0.00 4.44
2901 6259 1.335810 GAGACAAAACCCGACCAAACC 59.664 52.381 0.00 0.00 0.00 3.27
2902 6260 2.294979 AGAGACAAAACCCGACCAAAC 58.705 47.619 0.00 0.00 0.00 2.93
2903 6261 2.721425 AGAGACAAAACCCGACCAAA 57.279 45.000 0.00 0.00 0.00 3.28
2904 6262 2.685897 CAAAGAGACAAAACCCGACCAA 59.314 45.455 0.00 0.00 0.00 3.67
2905 6263 2.294074 CAAAGAGACAAAACCCGACCA 58.706 47.619 0.00 0.00 0.00 4.02
2906 6264 1.607148 CCAAAGAGACAAAACCCGACC 59.393 52.381 0.00 0.00 0.00 4.79
2907 6265 1.607148 CCCAAAGAGACAAAACCCGAC 59.393 52.381 0.00 0.00 0.00 4.79
2908 6266 1.491332 TCCCAAAGAGACAAAACCCGA 59.509 47.619 0.00 0.00 0.00 5.14
2909 6267 1.975660 TCCCAAAGAGACAAAACCCG 58.024 50.000 0.00 0.00 0.00 5.28
2910 6268 2.562738 CCATCCCAAAGAGACAAAACCC 59.437 50.000 0.00 0.00 0.00 4.11
2911 6269 2.029020 GCCATCCCAAAGAGACAAAACC 60.029 50.000 0.00 0.00 0.00 3.27
2912 6270 2.627699 TGCCATCCCAAAGAGACAAAAC 59.372 45.455 0.00 0.00 0.00 2.43
2913 6271 2.956132 TGCCATCCCAAAGAGACAAAA 58.044 42.857 0.00 0.00 0.00 2.44
2914 6272 2.673775 TGCCATCCCAAAGAGACAAA 57.326 45.000 0.00 0.00 0.00 2.83
2915 6273 2.673775 TTGCCATCCCAAAGAGACAA 57.326 45.000 0.00 0.00 0.00 3.18
2916 6274 2.905415 ATTGCCATCCCAAAGAGACA 57.095 45.000 0.00 0.00 0.00 3.41
2917 6275 3.217626 CCTATTGCCATCCCAAAGAGAC 58.782 50.000 0.00 0.00 0.00 3.36
2918 6276 2.852449 ACCTATTGCCATCCCAAAGAGA 59.148 45.455 0.00 0.00 0.00 3.10
2919 6277 3.303351 ACCTATTGCCATCCCAAAGAG 57.697 47.619 0.00 0.00 0.00 2.85
2920 6278 3.631250 GAACCTATTGCCATCCCAAAGA 58.369 45.455 0.00 0.00 0.00 2.52
2921 6279 2.358898 CGAACCTATTGCCATCCCAAAG 59.641 50.000 0.00 0.00 0.00 2.77
2922 6280 2.291282 ACGAACCTATTGCCATCCCAAA 60.291 45.455 0.00 0.00 0.00 3.28
2923 6281 1.283613 ACGAACCTATTGCCATCCCAA 59.716 47.619 0.00 0.00 0.00 4.12
2924 6282 0.916086 ACGAACCTATTGCCATCCCA 59.084 50.000 0.00 0.00 0.00 4.37
2925 6283 1.141053 AGACGAACCTATTGCCATCCC 59.859 52.381 0.00 0.00 0.00 3.85
2926 6284 2.622064 AGACGAACCTATTGCCATCC 57.378 50.000 0.00 0.00 0.00 3.51
2927 6285 4.632153 ACATAGACGAACCTATTGCCATC 58.368 43.478 0.00 0.00 0.00 3.51
2928 6286 4.503296 GGACATAGACGAACCTATTGCCAT 60.503 45.833 0.00 0.00 0.00 4.40
2929 6287 3.181469 GGACATAGACGAACCTATTGCCA 60.181 47.826 0.00 0.00 0.00 4.92
2930 6288 3.181469 TGGACATAGACGAACCTATTGCC 60.181 47.826 0.00 0.00 0.00 4.52
2931 6289 3.802685 GTGGACATAGACGAACCTATTGC 59.197 47.826 0.00 0.00 0.00 3.56
2932 6290 5.263968 AGTGGACATAGACGAACCTATTG 57.736 43.478 0.00 0.00 0.00 1.90
2933 6291 5.657302 AGAAGTGGACATAGACGAACCTATT 59.343 40.000 0.00 0.00 0.00 1.73
2934 6292 5.202004 AGAAGTGGACATAGACGAACCTAT 58.798 41.667 0.00 0.00 0.00 2.57
2935 6293 4.597004 AGAAGTGGACATAGACGAACCTA 58.403 43.478 0.00 0.00 0.00 3.08
2936 6294 3.432378 AGAAGTGGACATAGACGAACCT 58.568 45.455 0.00 0.00 0.00 3.50
2937 6295 3.870633 AGAAGTGGACATAGACGAACC 57.129 47.619 0.00 0.00 0.00 3.62
2938 6296 5.521544 GGATAGAAGTGGACATAGACGAAC 58.478 45.833 0.00 0.00 0.00 3.95
2939 6297 4.275196 CGGATAGAAGTGGACATAGACGAA 59.725 45.833 0.00 0.00 0.00 3.85
2940 6298 3.813724 CGGATAGAAGTGGACATAGACGA 59.186 47.826 0.00 0.00 0.00 4.20
2941 6299 3.564644 ACGGATAGAAGTGGACATAGACG 59.435 47.826 0.00 0.00 0.00 4.18
2942 6300 5.282510 CAACGGATAGAAGTGGACATAGAC 58.717 45.833 0.00 0.00 0.00 2.59
2943 6301 4.341235 CCAACGGATAGAAGTGGACATAGA 59.659 45.833 0.00 0.00 0.00 1.98
2944 6302 4.341235 TCCAACGGATAGAAGTGGACATAG 59.659 45.833 0.00 0.00 0.00 2.23
2945 6303 4.283337 TCCAACGGATAGAAGTGGACATA 58.717 43.478 0.00 0.00 0.00 2.29
2946 6304 3.104512 TCCAACGGATAGAAGTGGACAT 58.895 45.455 0.00 0.00 0.00 3.06
2947 6305 2.531771 TCCAACGGATAGAAGTGGACA 58.468 47.619 0.00 0.00 0.00 4.02
2948 6306 3.718815 GATCCAACGGATAGAAGTGGAC 58.281 50.000 0.00 0.00 43.27 4.02
2949 6307 2.361119 CGATCCAACGGATAGAAGTGGA 59.639 50.000 0.00 0.00 43.27 4.02
2950 6308 2.100916 ACGATCCAACGGATAGAAGTGG 59.899 50.000 9.73 0.00 43.27 4.00
2951 6309 3.116300 CACGATCCAACGGATAGAAGTG 58.884 50.000 9.73 7.70 43.27 3.16
2952 6310 2.481449 GCACGATCCAACGGATAGAAGT 60.481 50.000 9.73 0.00 43.27 3.01
2953 6311 2.128035 GCACGATCCAACGGATAGAAG 58.872 52.381 9.73 3.85 43.27 2.85
2954 6312 1.535226 CGCACGATCCAACGGATAGAA 60.535 52.381 9.73 0.00 43.27 2.10
2955 6313 0.030235 CGCACGATCCAACGGATAGA 59.970 55.000 9.73 0.00 43.27 1.98
2956 6314 0.248907 ACGCACGATCCAACGGATAG 60.249 55.000 0.00 0.00 43.27 2.08
2957 6315 0.526739 CACGCACGATCCAACGGATA 60.527 55.000 0.00 0.00 43.27 2.59
2958 6316 1.809619 CACGCACGATCCAACGGAT 60.810 57.895 0.00 0.00 46.28 4.18
2959 6317 2.431771 CACGCACGATCCAACGGA 60.432 61.111 0.00 0.00 37.61 4.69
2960 6318 4.147322 GCACGCACGATCCAACGG 62.147 66.667 0.00 0.00 37.61 4.44
2961 6319 4.483683 CGCACGCACGATCCAACG 62.484 66.667 0.00 0.00 39.31 4.10
2962 6320 3.348967 GACGCACGCACGATCCAAC 62.349 63.158 4.54 0.00 36.70 3.77
2963 6321 3.109547 GACGCACGCACGATCCAA 61.110 61.111 4.54 0.00 36.70 3.53
2966 6324 3.838795 GTGGACGCACGCACGATC 61.839 66.667 4.54 0.00 36.70 3.69
2977 6335 2.088950 AATTAACTCCACGGTGGACG 57.911 50.000 25.53 21.53 42.67 4.79
2978 6336 2.925563 CGTAATTAACTCCACGGTGGAC 59.074 50.000 25.53 12.79 42.67 4.02
2979 6337 2.674747 GCGTAATTAACTCCACGGTGGA 60.675 50.000 27.17 27.17 45.98 4.02
2980 6338 1.662122 GCGTAATTAACTCCACGGTGG 59.338 52.381 21.27 21.27 39.43 4.61
2981 6339 2.339418 TGCGTAATTAACTCCACGGTG 58.661 47.619 0.00 0.00 35.04 4.94
2982 6340 2.231964 TCTGCGTAATTAACTCCACGGT 59.768 45.455 0.00 0.00 35.04 4.83
2983 6341 2.883574 TCTGCGTAATTAACTCCACGG 58.116 47.619 0.00 0.00 35.04 4.94
2984 6342 3.924686 ACTTCTGCGTAATTAACTCCACG 59.075 43.478 0.00 0.00 37.45 4.94
2985 6343 5.290400 GGTACTTCTGCGTAATTAACTCCAC 59.710 44.000 0.00 0.00 0.00 4.02
2986 6344 5.047164 TGGTACTTCTGCGTAATTAACTCCA 60.047 40.000 0.00 0.00 0.00 3.86
3153 6511 4.742201 CGTCACGTCAGCCCCTGG 62.742 72.222 0.00 0.00 31.51 4.45
3168 6526 5.066893 GGGGTTTTTCTGTAAAAGAAGACGT 59.933 40.000 0.00 0.00 45.64 4.34
3170 6528 6.512903 CGAGGGGTTTTTCTGTAAAAGAAGAC 60.513 42.308 0.00 0.00 45.64 3.01
3252 6612 2.717011 AGTCGCGCGTTATTTGTTTTTG 59.283 40.909 30.98 0.00 0.00 2.44
3253 6613 2.717011 CAGTCGCGCGTTATTTGTTTTT 59.283 40.909 30.98 0.00 0.00 1.94
3254 6614 2.286536 ACAGTCGCGCGTTATTTGTTTT 60.287 40.909 30.98 3.98 0.00 2.43
3331 6712 7.970384 TCAACTTTATCTAAACTATTGGCGTG 58.030 34.615 0.00 0.00 0.00 5.34
3587 7151 0.187117 TGTCAGGGGCCACATTTCAA 59.813 50.000 8.31 0.00 0.00 2.69
3618 7182 4.325972 TGTATTGAGCTGAAACTGATGCA 58.674 39.130 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.