Multiple sequence alignment - TraesCS5B01G395300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G395300 chr5B 100.000 4674 0 0 1 4674 572604404 572599731 0.000000e+00 8632.0
1 TraesCS5B01G395300 chr5B 93.333 60 4 0 2549 2608 572601771 572601712 6.440000e-14 89.8
2 TraesCS5B01G395300 chr5B 93.333 60 4 0 2634 2693 572601856 572601797 6.440000e-14 89.8
3 TraesCS5B01G395300 chr5D 93.372 2595 98 29 679 3244 465376658 465374109 0.000000e+00 3771.0
4 TraesCS5B01G395300 chr5D 89.075 897 59 23 3230 4116 465374091 465373224 0.000000e+00 1077.0
5 TraesCS5B01G395300 chr5D 89.670 455 27 8 159 610 465377085 465376648 3.160000e-156 562.0
6 TraesCS5B01G395300 chr5D 91.176 170 12 2 1 167 369716822 369716653 1.310000e-55 228.0
7 TraesCS5B01G395300 chr5D 90.341 176 10 5 4142 4317 465373225 465373057 1.690000e-54 224.0
8 TraesCS5B01G395300 chr5D 89.714 175 15 2 1 172 550397757 550397931 2.190000e-53 220.0
9 TraesCS5B01G395300 chr5D 93.548 62 4 0 2549 2610 465374722 465374661 4.980000e-15 93.5
10 TraesCS5B01G395300 chr5D 93.333 60 4 0 2634 2693 465374807 465374748 6.440000e-14 89.8
11 TraesCS5B01G395300 chr5A 92.635 1833 65 21 725 2533 585636592 585634806 0.000000e+00 2573.0
12 TraesCS5B01G395300 chr5A 87.552 956 68 22 3230 4174 585633804 585632889 0.000000e+00 1059.0
13 TraesCS5B01G395300 chr5A 91.880 702 45 6 2552 3244 585634520 585633822 0.000000e+00 970.0
14 TraesCS5B01G395300 chr5A 85.075 134 7 4 484 610 585636722 585636595 1.770000e-24 124.0
15 TraesCS5B01G395300 chr5A 85.897 78 8 2 610 685 502690128 502690204 3.880000e-11 80.5
16 TraesCS5B01G395300 chr5A 91.228 57 5 0 2637 2693 585634520 585634464 1.390000e-10 78.7
17 TraesCS5B01G395300 chr4D 90.698 258 23 1 4313 4569 133736212 133735955 4.480000e-90 342.0
18 TraesCS5B01G395300 chr4D 91.071 168 11 4 1 165 96715690 96715856 1.690000e-54 224.0
19 TraesCS5B01G395300 chr4D 92.308 65 5 0 324 388 42287736 42287672 4.980000e-15 93.5
20 TraesCS5B01G395300 chr4D 100.000 44 0 0 4631 4674 461223414 461223457 1.080000e-11 82.4
21 TraesCS5B01G395300 chr4D 96.970 33 1 0 4642 4674 30283689 30283721 6.530000e-04 56.5
22 TraesCS5B01G395300 chr7D 90.476 252 24 0 4318 4569 632367269 632367018 2.700000e-87 333.0
23 TraesCS5B01G395300 chr7D 88.976 254 25 2 4316 4569 83752118 83751868 1.260000e-80 311.0
24 TraesCS5B01G395300 chr7D 88.627 255 29 0 4315 4569 184982601 184982855 1.260000e-80 311.0
25 TraesCS5B01G395300 chr7D 88.889 252 26 1 4318 4569 36453211 36452962 4.540000e-80 309.0
26 TraesCS5B01G395300 chr7D 92.683 82 4 2 4550 4630 568603853 568603773 2.950000e-22 117.0
27 TraesCS5B01G395300 chr3D 91.810 232 17 1 4316 4547 407752763 407752534 5.830000e-84 322.0
28 TraesCS5B01G395300 chr3D 91.667 60 4 1 2181 2240 397781671 397781613 1.080000e-11 82.4
29 TraesCS5B01G395300 chr3D 92.453 53 2 2 2160 2210 389633117 389633169 1.800000e-09 75.0
30 TraesCS5B01G395300 chr3B 91.489 235 18 1 4318 4552 191182836 191183068 5.830000e-84 322.0
31 TraesCS5B01G395300 chr3B 100.000 72 0 0 4559 4630 252808704 252808775 2.930000e-27 134.0
32 TraesCS5B01G395300 chr3B 100.000 72 0 0 4559 4630 542503032 542503103 2.930000e-27 134.0
33 TraesCS5B01G395300 chr3B 90.476 63 6 0 619 681 130052258 130052320 3.000000e-12 84.2
34 TraesCS5B01G395300 chr3B 88.889 54 3 3 2160 2210 507132297 507132350 3.900000e-06 63.9
35 TraesCS5B01G395300 chr3B 96.875 32 1 0 2210 2241 128563015 128562984 2.000000e-03 54.7
36 TraesCS5B01G395300 chr2D 89.494 257 24 2 4318 4573 30431375 30431121 5.830000e-84 322.0
37 TraesCS5B01G395300 chr2D 91.124 169 12 2 1 166 572948660 572948828 4.710000e-55 226.0
38 TraesCS5B01G395300 chr2D 91.566 166 10 2 1 162 608483120 608482955 4.710000e-55 226.0
39 TraesCS5B01G395300 chr7B 88.462 260 29 1 4316 4574 474488197 474487938 3.510000e-81 313.0
40 TraesCS5B01G395300 chr1D 92.727 165 9 2 1 162 64887608 64887444 7.820000e-58 235.0
41 TraesCS5B01G395300 chr1D 92.683 82 4 2 4550 4630 418099713 418099633 2.950000e-22 117.0
42 TraesCS5B01G395300 chr6D 92.683 164 9 3 1 161 469274266 469274103 2.810000e-57 233.0
43 TraesCS5B01G395300 chr6A 91.716 169 9 4 1 165 585789899 585790066 3.640000e-56 230.0
44 TraesCS5B01G395300 chr1B 92.073 164 10 3 1 162 60251986 60251824 1.310000e-55 228.0
45 TraesCS5B01G395300 chr1B 89.706 68 5 1 2175 2240 3949849 3949916 8.330000e-13 86.1
46 TraesCS5B01G395300 chr1B 87.500 64 8 0 618 681 623692056 623692119 1.800000e-09 75.0
47 TraesCS5B01G395300 chr1B 91.837 49 2 2 2163 2209 579558658 579558610 3.020000e-07 67.6
48 TraesCS5B01G395300 chr4B 100.000 72 0 0 4559 4630 596931732 596931661 2.930000e-27 134.0
49 TraesCS5B01G395300 chr4B 90.909 77 4 3 610 683 95690658 95690734 2.980000e-17 100.0
50 TraesCS5B01G395300 chr2B 98.611 72 1 0 4559 4630 553576215 553576144 1.370000e-25 128.0
51 TraesCS5B01G395300 chr2B 93.902 82 3 2 4550 4630 160751656 160751576 6.350000e-24 122.0
52 TraesCS5B01G395300 chr2B 85.714 70 10 0 610 679 659063782 659063851 1.800000e-09 75.0
53 TraesCS5B01G395300 chr6B 93.902 82 3 2 4550 4630 522089684 522089604 6.350000e-24 122.0
54 TraesCS5B01G395300 chr6B 92.857 84 3 3 4550 4630 439174962 439174879 8.220000e-23 119.0
55 TraesCS5B01G395300 chr6B 90.476 63 5 1 615 677 476114526 476114587 1.080000e-11 82.4
56 TraesCS5B01G395300 chr3A 85.586 111 13 3 315 423 579048792 579048901 3.820000e-21 113.0
57 TraesCS5B01G395300 chr3A 90.741 54 2 2 2160 2210 418753008 418753061 8.390000e-08 69.4
58 TraesCS5B01G395300 chr3A 91.837 49 2 2 2163 2210 512682145 512682192 3.020000e-07 67.6
59 TraesCS5B01G395300 chr2A 91.026 78 6 1 610 686 206862728 206862805 2.300000e-18 104.0
60 TraesCS5B01G395300 chr2A 84.000 75 11 1 315 389 60118461 60118534 2.330000e-08 71.3
61 TraesCS5B01G395300 chr4A 88.158 76 8 1 610 685 609179493 609179419 6.440000e-14 89.8
62 TraesCS5B01G395300 chr4A 100.000 31 0 0 2210 2240 25026417 25026447 1.820000e-04 58.4
63 TraesCS5B01G395300 chr4A 100.000 31 0 0 2210 2240 56270130 56270100 1.820000e-04 58.4
64 TraesCS5B01G395300 chr7A 90.000 60 5 1 622 681 43533053 43532995 5.020000e-10 76.8
65 TraesCS5B01G395300 chr7A 100.000 31 0 0 2210 2240 40556487 40556457 1.820000e-04 58.4
66 TraesCS5B01G395300 chr7A 96.774 31 1 0 2210 2240 661165431 661165461 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G395300 chr5B 572599731 572604404 4673 True 2937.20 8632 95.555333 1 4674 3 chr5B.!!$R1 4673
1 TraesCS5B01G395300 chr5D 465373057 465377085 4028 True 969.55 3771 91.556500 159 4317 6 chr5D.!!$R2 4158
2 TraesCS5B01G395300 chr5A 585632889 585636722 3833 True 960.94 2573 89.674000 484 4174 5 chr5A.!!$R1 3690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 665 0.027063 ACAAAGCGGACGTTCGTTTG 59.973 50.0 27.57 27.57 37.28 2.93 F
982 1001 0.184933 GGCTAGCAGGAGGAGAGAGA 59.815 60.0 18.24 0.00 0.00 3.10 F
1783 1820 0.104304 AGGCACGTCTTGACGTTTCT 59.896 50.0 23.61 19.59 44.63 2.52 F
3393 3757 0.032017 AGATCCGAGGTACCAAGGCT 60.032 55.0 15.94 8.22 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 1820 0.107752 TGCGCTAGGAATGCATCACA 60.108 50.0 9.73 0.0 32.86 3.58 R
1839 1881 0.250295 TCGGCCTTGACCTGAAACAG 60.250 55.0 0.00 0.0 0.00 3.16 R
3433 3799 0.108945 GCATTTGGCTGCTTGAGGAC 60.109 55.0 0.00 0.0 39.12 3.85 R
4431 4800 0.039437 CCGCGCGTCCAACTCTATAT 60.039 55.0 29.95 0.0 0.00 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.533831 ACCAATAAAAACTTCAGATGTCCTATT 57.466 29.630 0.00 0.00 0.00 1.73
68 69 9.750125 AAAACTTCAGATGTCCTATTTTCAAAC 57.250 29.630 0.00 0.00 0.00 2.93
69 70 7.454260 ACTTCAGATGTCCTATTTTCAAACC 57.546 36.000 0.00 0.00 0.00 3.27
70 71 6.149474 ACTTCAGATGTCCTATTTTCAAACCG 59.851 38.462 0.00 0.00 0.00 4.44
71 72 5.556915 TCAGATGTCCTATTTTCAAACCGT 58.443 37.500 0.00 0.00 0.00 4.83
72 73 6.703319 TCAGATGTCCTATTTTCAAACCGTA 58.297 36.000 0.00 0.00 0.00 4.02
73 74 7.335627 TCAGATGTCCTATTTTCAAACCGTAT 58.664 34.615 0.00 0.00 0.00 3.06
74 75 8.479689 TCAGATGTCCTATTTTCAAACCGTATA 58.520 33.333 0.00 0.00 0.00 1.47
75 76 9.104965 CAGATGTCCTATTTTCAAACCGTATAA 57.895 33.333 0.00 0.00 0.00 0.98
76 77 9.847224 AGATGTCCTATTTTCAAACCGTATAAT 57.153 29.630 0.00 0.00 0.00 1.28
122 123 7.743116 TTAGGGTGATAAGATTGACAACCTA 57.257 36.000 0.00 0.00 46.75 3.08
123 124 6.240549 AGGGTGATAAGATTGACAACCTAG 57.759 41.667 0.00 0.00 46.75 3.02
124 125 5.964477 AGGGTGATAAGATTGACAACCTAGA 59.036 40.000 0.00 0.00 46.75 2.43
125 126 6.617371 AGGGTGATAAGATTGACAACCTAGAT 59.383 38.462 0.00 0.00 46.75 1.98
126 127 7.789831 AGGGTGATAAGATTGACAACCTAGATA 59.210 37.037 0.00 0.00 46.75 1.98
127 128 8.598041 GGGTGATAAGATTGACAACCTAGATAT 58.402 37.037 0.00 0.00 37.18 1.63
131 132 9.291664 GATAAGATTGACAACCTAGATATACGC 57.708 37.037 0.00 0.00 0.00 4.42
132 133 5.700846 AGATTGACAACCTAGATATACGCG 58.299 41.667 3.53 3.53 0.00 6.01
133 134 3.278367 TGACAACCTAGATATACGCGC 57.722 47.619 5.73 0.00 0.00 6.86
134 135 2.240040 GACAACCTAGATATACGCGCG 58.760 52.381 30.96 30.96 0.00 6.86
135 136 1.068748 ACAACCTAGATATACGCGCGG 60.069 52.381 35.22 16.31 0.00 6.46
136 137 0.524862 AACCTAGATATACGCGCGGG 59.475 55.000 35.22 23.96 0.00 6.13
137 138 0.321919 ACCTAGATATACGCGCGGGA 60.322 55.000 35.22 22.16 0.00 5.14
138 139 0.098376 CCTAGATATACGCGCGGGAC 59.902 60.000 35.22 19.11 0.00 4.46
139 140 1.085091 CTAGATATACGCGCGGGACT 58.915 55.000 35.22 24.48 0.00 3.85
140 141 1.467734 CTAGATATACGCGCGGGACTT 59.532 52.381 35.22 15.47 0.00 3.01
141 142 0.039437 AGATATACGCGCGGGACTTG 60.039 55.000 35.22 4.42 0.00 3.16
142 143 0.318445 GATATACGCGCGGGACTTGT 60.318 55.000 35.22 13.81 0.00 3.16
143 144 0.953727 ATATACGCGCGGGACTTGTA 59.046 50.000 35.22 15.77 0.00 2.41
144 145 0.737804 TATACGCGCGGGACTTGTAA 59.262 50.000 35.22 7.60 0.00 2.41
145 146 0.108709 ATACGCGCGGGACTTGTAAA 60.109 50.000 35.22 5.97 0.00 2.01
146 147 1.008361 TACGCGCGGGACTTGTAAAC 61.008 55.000 35.22 0.00 0.00 2.01
147 148 2.025418 CGCGCGGGACTTGTAAACT 61.025 57.895 24.84 0.00 0.00 2.66
148 149 0.733566 CGCGCGGGACTTGTAAACTA 60.734 55.000 24.84 0.00 0.00 2.24
149 150 1.431496 GCGCGGGACTTGTAAACTAA 58.569 50.000 8.83 0.00 0.00 2.24
150 151 1.127397 GCGCGGGACTTGTAAACTAAC 59.873 52.381 8.83 0.00 0.00 2.34
151 152 1.387756 CGCGGGACTTGTAAACTAACG 59.612 52.381 0.00 0.00 0.00 3.18
152 153 1.728425 GCGGGACTTGTAAACTAACGG 59.272 52.381 0.00 0.00 0.00 4.44
153 154 2.610232 GCGGGACTTGTAAACTAACGGA 60.610 50.000 0.00 0.00 0.00 4.69
154 155 3.248266 CGGGACTTGTAAACTAACGGAG 58.752 50.000 0.00 0.00 0.00 4.63
155 156 3.593096 GGGACTTGTAAACTAACGGAGG 58.407 50.000 0.00 0.00 0.00 4.30
156 157 3.593096 GGACTTGTAAACTAACGGAGGG 58.407 50.000 0.00 0.00 0.00 4.30
157 158 3.259123 GGACTTGTAAACTAACGGAGGGA 59.741 47.826 0.00 0.00 0.00 4.20
228 229 9.778741 CTCATAACTTAGCCTTTAATATGGTGA 57.221 33.333 0.00 0.00 0.00 4.02
269 270 9.710979 CTCTTATTAACTAGTATATCGCTCAGC 57.289 37.037 0.00 0.00 0.00 4.26
283 284 0.731417 CTCAGCTGATCTTTTGCGGG 59.269 55.000 18.63 0.00 0.00 6.13
284 285 0.324614 TCAGCTGATCTTTTGCGGGA 59.675 50.000 13.74 0.00 0.00 5.14
318 319 5.887598 ACTCTTATAAATGCCATGCTTGTGA 59.112 36.000 0.00 0.00 0.00 3.58
339 340 3.351740 ACACAAACACATGACAACTCCA 58.648 40.909 0.00 0.00 0.00 3.86
383 384 2.117206 TGCGGGGATGGCAACTTT 59.883 55.556 0.00 0.00 37.49 2.66
384 385 0.963355 GTGCGGGGATGGCAACTTTA 60.963 55.000 0.00 0.00 42.92 1.85
385 386 0.679640 TGCGGGGATGGCAACTTTAG 60.680 55.000 0.00 0.00 37.49 1.85
388 389 2.167662 CGGGGATGGCAACTTTAGTTT 58.832 47.619 0.00 0.00 35.83 2.66
448 451 1.890876 AGTGCTTCGTGCCACAAATA 58.109 45.000 0.00 0.00 42.00 1.40
459 462 3.252215 GTGCCACAAATATGCCGCTTATA 59.748 43.478 0.00 0.00 0.00 0.98
467 470 6.266558 ACAAATATGCCGCTTATAATTTGGGA 59.733 34.615 13.42 2.88 33.53 4.37
602 610 2.310052 CAACTTTGGATCCCTCCTCCTT 59.690 50.000 9.90 0.00 42.59 3.36
604 612 1.492599 CTTTGGATCCCTCCTCCTTCC 59.507 57.143 9.90 0.00 42.59 3.46
605 613 0.327576 TTGGATCCCTCCTCCTTCCC 60.328 60.000 9.90 0.00 42.59 3.97
606 614 1.839296 GGATCCCTCCTCCTTCCCG 60.839 68.421 0.00 0.00 38.65 5.14
607 615 1.233369 GATCCCTCCTCCTTCCCGA 59.767 63.158 0.00 0.00 0.00 5.14
608 616 0.398664 GATCCCTCCTCCTTCCCGAA 60.399 60.000 0.00 0.00 0.00 4.30
609 617 0.691413 ATCCCTCCTCCTTCCCGAAC 60.691 60.000 0.00 0.00 0.00 3.95
610 618 1.612442 CCCTCCTCCTTCCCGAACA 60.612 63.158 0.00 0.00 0.00 3.18
611 619 0.983378 CCCTCCTCCTTCCCGAACAT 60.983 60.000 0.00 0.00 0.00 2.71
612 620 0.912486 CCTCCTCCTTCCCGAACATT 59.088 55.000 0.00 0.00 0.00 2.71
613 621 1.407437 CCTCCTCCTTCCCGAACATTG 60.407 57.143 0.00 0.00 0.00 2.82
614 622 0.035439 TCCTCCTTCCCGAACATTGC 60.035 55.000 0.00 0.00 0.00 3.56
615 623 0.035056 CCTCCTTCCCGAACATTGCT 60.035 55.000 0.00 0.00 0.00 3.91
616 624 1.209504 CCTCCTTCCCGAACATTGCTA 59.790 52.381 0.00 0.00 0.00 3.49
617 625 2.280628 CTCCTTCCCGAACATTGCTAC 58.719 52.381 0.00 0.00 0.00 3.58
618 626 1.065709 TCCTTCCCGAACATTGCTACC 60.066 52.381 0.00 0.00 0.00 3.18
619 627 1.379527 CTTCCCGAACATTGCTACCC 58.620 55.000 0.00 0.00 0.00 3.69
620 628 0.034863 TTCCCGAACATTGCTACCCC 60.035 55.000 0.00 0.00 0.00 4.95
621 629 1.202099 TCCCGAACATTGCTACCCCA 61.202 55.000 0.00 0.00 0.00 4.96
622 630 0.322997 CCCGAACATTGCTACCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
623 631 1.094785 CCGAACATTGCTACCCCAAG 58.905 55.000 0.00 0.00 0.00 3.61
624 632 0.451783 CGAACATTGCTACCCCAAGC 59.548 55.000 0.00 0.00 43.08 4.01
625 633 0.451783 GAACATTGCTACCCCAAGCG 59.548 55.000 0.00 0.00 45.85 4.68
626 634 0.965363 AACATTGCTACCCCAAGCGG 60.965 55.000 0.00 0.00 45.85 5.52
627 635 1.077787 CATTGCTACCCCAAGCGGA 60.078 57.895 0.00 0.00 45.85 5.54
628 636 1.077716 ATTGCTACCCCAAGCGGAC 60.078 57.895 0.00 0.00 45.85 4.79
629 637 2.869503 ATTGCTACCCCAAGCGGACG 62.870 60.000 0.00 0.00 45.85 4.79
630 638 3.766691 GCTACCCCAAGCGGACGA 61.767 66.667 0.00 0.00 31.76 4.20
631 639 2.975536 CTACCCCAAGCGGACGAA 59.024 61.111 0.00 0.00 0.00 3.85
632 640 1.294138 CTACCCCAAGCGGACGAAA 59.706 57.895 0.00 0.00 0.00 3.46
633 641 0.107848 CTACCCCAAGCGGACGAAAT 60.108 55.000 0.00 0.00 0.00 2.17
634 642 0.108041 TACCCCAAGCGGACGAAATC 60.108 55.000 0.00 0.00 0.00 2.17
635 643 2.112815 CCCCAAGCGGACGAAATCC 61.113 63.158 0.00 0.00 45.20 3.01
644 652 0.446616 GGACGAAATCCGGACAAAGC 59.553 55.000 6.12 0.00 43.93 3.51
645 653 0.094730 GACGAAATCCGGACAAAGCG 59.905 55.000 6.12 9.45 43.93 4.68
646 654 1.296056 ACGAAATCCGGACAAAGCGG 61.296 55.000 6.12 0.00 43.93 5.52
647 655 1.017177 CGAAATCCGGACAAAGCGGA 61.017 55.000 6.12 0.00 36.17 5.54
648 656 0.446616 GAAATCCGGACAAAGCGGAC 59.553 55.000 6.12 0.00 34.41 4.79
649 657 1.296056 AAATCCGGACAAAGCGGACG 61.296 55.000 6.12 0.00 34.41 4.79
650 658 2.444700 AATCCGGACAAAGCGGACGT 62.445 55.000 6.12 0.00 34.41 4.34
651 659 2.444700 ATCCGGACAAAGCGGACGTT 62.445 55.000 6.12 0.00 34.41 3.99
652 660 2.664436 CCGGACAAAGCGGACGTTC 61.664 63.158 0.00 0.00 0.00 3.95
653 661 2.851104 GGACAAAGCGGACGTTCG 59.149 61.111 13.13 13.13 0.00 3.95
654 662 1.952635 GGACAAAGCGGACGTTCGT 60.953 57.895 19.12 1.43 0.00 3.85
655 663 1.493134 GGACAAAGCGGACGTTCGTT 61.493 55.000 19.12 9.43 0.00 3.85
656 664 0.302589 GACAAAGCGGACGTTCGTTT 59.697 50.000 19.12 16.04 35.22 3.60
657 665 0.027063 ACAAAGCGGACGTTCGTTTG 59.973 50.000 27.57 27.57 37.28 2.93
658 666 0.656205 CAAAGCGGACGTTCGTTTGG 60.656 55.000 19.40 12.69 34.08 3.28
659 667 1.778027 AAAGCGGACGTTCGTTTGGG 61.778 55.000 19.40 0.00 34.08 4.12
660 668 3.719144 GCGGACGTTCGTTTGGGG 61.719 66.667 19.12 0.00 0.00 4.96
661 669 2.280321 CGGACGTTCGTTTGGGGT 60.280 61.111 8.45 0.00 0.00 4.95
662 670 2.312436 CGGACGTTCGTTTGGGGTC 61.312 63.158 8.45 0.00 0.00 4.46
663 671 2.312436 GGACGTTCGTTTGGGGTCG 61.312 63.158 0.00 0.00 0.00 4.79
664 672 1.592400 GACGTTCGTTTGGGGTCGT 60.592 57.895 0.00 0.00 0.00 4.34
665 673 1.824272 GACGTTCGTTTGGGGTCGTG 61.824 60.000 0.00 0.00 0.00 4.35
666 674 2.635338 GTTCGTTTGGGGTCGTGC 59.365 61.111 0.00 0.00 0.00 5.34
667 675 2.968156 TTCGTTTGGGGTCGTGCG 60.968 61.111 0.00 0.00 0.00 5.34
668 676 4.973055 TCGTTTGGGGTCGTGCGG 62.973 66.667 0.00 0.00 0.00 5.69
670 678 3.656045 GTTTGGGGTCGTGCGGTG 61.656 66.667 0.00 0.00 0.00 4.94
671 679 4.939368 TTTGGGGTCGTGCGGTGG 62.939 66.667 0.00 0.00 0.00 4.61
811 823 1.233950 ACACGACGCCATCATTTGCA 61.234 50.000 0.00 0.00 0.00 4.08
979 998 3.442441 CGGCTAGCAGGAGGAGAG 58.558 66.667 18.24 0.00 0.00 3.20
980 999 1.152860 CGGCTAGCAGGAGGAGAGA 60.153 63.158 18.24 0.00 0.00 3.10
981 1000 1.172180 CGGCTAGCAGGAGGAGAGAG 61.172 65.000 18.24 0.00 0.00 3.20
982 1001 0.184933 GGCTAGCAGGAGGAGAGAGA 59.815 60.000 18.24 0.00 0.00 3.10
983 1002 1.609208 GCTAGCAGGAGGAGAGAGAG 58.391 60.000 10.63 0.00 0.00 3.20
984 1003 1.142870 GCTAGCAGGAGGAGAGAGAGA 59.857 57.143 10.63 0.00 0.00 3.10
985 1004 2.811873 GCTAGCAGGAGGAGAGAGAGAG 60.812 59.091 10.63 0.00 0.00 3.20
986 1005 1.595311 AGCAGGAGGAGAGAGAGAGA 58.405 55.000 0.00 0.00 0.00 3.10
987 1006 1.492176 AGCAGGAGGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
988 1007 1.490490 GCAGGAGGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
989 1008 2.486191 GCAGGAGGAGAGAGAGAGAGAG 60.486 59.091 0.00 0.00 0.00 3.20
990 1009 3.041211 CAGGAGGAGAGAGAGAGAGAGA 58.959 54.545 0.00 0.00 0.00 3.10
991 1010 3.070734 CAGGAGGAGAGAGAGAGAGAGAG 59.929 56.522 0.00 0.00 0.00 3.20
992 1011 3.051803 AGGAGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1152 1180 3.069980 GCTGGTCGCGGTCAGATCT 62.070 63.158 25.67 0.00 33.11 2.75
1380 1417 0.674895 CCAAGAAGAAGGCCCTCACG 60.675 60.000 3.68 0.00 0.00 4.35
1460 1497 2.493973 GGAGCTCCTGTCGCAGAG 59.506 66.667 26.25 5.57 36.95 3.35
1609 1646 4.546829 TTGTGGTAATGGTGAGTAGGTC 57.453 45.455 0.00 0.00 0.00 3.85
1669 1706 4.299547 AGCACGCTCAAGGACGCA 62.300 61.111 0.00 0.00 0.00 5.24
1687 1724 3.041940 GTGCTGTTCCCGGACACG 61.042 66.667 0.73 0.00 40.55 4.49
1688 1725 4.980805 TGCTGTTCCCGGACACGC 62.981 66.667 0.73 6.88 39.22 5.34
1721 1758 0.384309 CGTCCGGGATGAGATTTCGA 59.616 55.000 10.90 0.00 0.00 3.71
1753 1790 0.465097 AGATCCAATGCCTTGCCGAG 60.465 55.000 0.00 0.00 0.00 4.63
1775 1812 4.680237 TCGCCCAGGCACGTCTTG 62.680 66.667 9.78 0.00 42.06 3.02
1782 1819 0.232303 CAGGCACGTCTTGACGTTTC 59.768 55.000 23.61 17.98 44.63 2.78
1783 1820 0.104304 AGGCACGTCTTGACGTTTCT 59.896 50.000 23.61 19.59 44.63 2.52
1784 1821 0.232303 GGCACGTCTTGACGTTTCTG 59.768 55.000 23.61 14.62 44.63 3.02
1785 1822 0.928229 GCACGTCTTGACGTTTCTGT 59.072 50.000 23.61 1.32 44.63 3.41
1786 1823 1.332028 GCACGTCTTGACGTTTCTGTG 60.332 52.381 23.61 13.68 44.63 3.66
1787 1824 2.190161 CACGTCTTGACGTTTCTGTGA 58.810 47.619 23.61 0.00 44.63 3.58
1788 1825 2.794910 CACGTCTTGACGTTTCTGTGAT 59.205 45.455 23.61 0.00 44.63 3.06
1789 1826 2.794910 ACGTCTTGACGTTTCTGTGATG 59.205 45.455 21.04 0.00 44.63 3.07
1790 1827 2.410262 CGTCTTGACGTTTCTGTGATGC 60.410 50.000 14.18 0.00 0.00 3.91
1791 1828 2.543848 GTCTTGACGTTTCTGTGATGCA 59.456 45.455 0.00 0.00 0.00 3.96
1799 1841 3.242543 CGTTTCTGTGATGCATTCCTAGC 60.243 47.826 0.00 0.00 0.00 3.42
1812 1854 3.334583 TTCCTAGCGCAATCTTTCAGT 57.665 42.857 11.47 0.00 0.00 3.41
1813 1855 4.465632 TTCCTAGCGCAATCTTTCAGTA 57.534 40.909 11.47 0.00 0.00 2.74
1814 1856 4.672587 TCCTAGCGCAATCTTTCAGTAT 57.327 40.909 11.47 0.00 0.00 2.12
1839 1881 4.634443 ACCAATCTAATGTTCGGTTGCTAC 59.366 41.667 0.00 0.00 0.00 3.58
1869 1911 0.955919 CAAGGCCGAGAAGAACACCC 60.956 60.000 0.00 0.00 0.00 4.61
1982 2024 5.065988 TGCTCCACAGTTCTTTTGTTAAGAC 59.934 40.000 0.00 0.00 0.00 3.01
2000 2042 7.826744 TGTTAAGACTGAATGTGTATATGCCAA 59.173 33.333 0.00 0.00 0.00 4.52
2056 2099 5.359756 TGTCACTATTAGATGGTGTGCATC 58.640 41.667 0.00 0.00 41.80 3.91
2096 2139 7.173907 TGCTTTTGGTTGTTTTCTTGAATTCAA 59.826 29.630 19.45 19.45 0.00 2.69
2108 2151 5.890334 TCTTGAATTCAAACTTGTGTGACC 58.110 37.500 20.82 0.00 35.15 4.02
2119 2162 1.098869 TGTGTGACCACGTTTGCAAT 58.901 45.000 0.00 0.00 44.92 3.56
2203 2246 6.873605 TCGATCCATATTAATTGTCGCTGATT 59.126 34.615 0.00 0.00 0.00 2.57
2204 2247 7.387673 TCGATCCATATTAATTGTCGCTGATTT 59.612 33.333 0.00 0.00 0.00 2.17
2205 2248 8.655970 CGATCCATATTAATTGTCGCTGATTTA 58.344 33.333 0.00 0.00 0.00 1.40
2206 2249 9.979270 GATCCATATTAATTGTCGCTGATTTAG 57.021 33.333 0.00 0.00 0.00 1.85
2207 2250 8.902540 TCCATATTAATTGTCGCTGATTTAGT 57.097 30.769 0.00 0.00 0.00 2.24
2208 2251 9.990360 TCCATATTAATTGTCGCTGATTTAGTA 57.010 29.630 0.00 0.00 0.00 1.82
2213 2256 6.893958 AATTGTCGCTGATTTAGTACTCTG 57.106 37.500 0.00 0.00 0.00 3.35
2259 2302 2.900546 AGGAGTAATAATCCAGAGGCCG 59.099 50.000 9.56 0.00 39.47 6.13
2359 2402 4.259356 ACGGCCTTCTACAAGATTTTACC 58.741 43.478 0.00 0.00 0.00 2.85
2364 2407 6.315642 GGCCTTCTACAAGATTTTACCAGTAC 59.684 42.308 0.00 0.00 0.00 2.73
2493 2538 7.020914 AGAAGATTTGACCGAATTATGCTTC 57.979 36.000 0.00 0.00 0.00 3.86
2693 3008 9.285770 GTTTAACAGCCATTAAGCTATACAAAC 57.714 33.333 0.00 0.00 42.61 2.93
2897 3212 6.267014 ACACAGCAGGAGTAACTTTAGTCTAA 59.733 38.462 4.26 0.00 34.32 2.10
2921 3236 2.699846 TCTCATGTTTTGGCCTGCTTTT 59.300 40.909 3.32 0.00 0.00 2.27
2928 3243 5.944013 TGTTTTGGCCTGCTTTTTAAAAAC 58.056 33.333 9.31 9.64 36.85 2.43
3068 3390 7.556733 AAACACTTTCTACACCGTCAAATTA 57.443 32.000 0.00 0.00 0.00 1.40
3083 3405 4.462483 GTCAAATTAGCAAGGACAATCCCA 59.538 41.667 0.00 0.00 37.19 4.37
3090 3412 3.136626 AGCAAGGACAATCCCATACCTAC 59.863 47.826 0.00 0.00 37.19 3.18
3091 3413 3.118038 GCAAGGACAATCCCATACCTACA 60.118 47.826 0.00 0.00 37.19 2.74
3122 3446 9.744468 ATGGTTAATTTGTTTAGTCTGTTTCAC 57.256 29.630 0.00 0.00 0.00 3.18
3133 3457 4.192317 AGTCTGTTTCACACTCCAAGTTC 58.808 43.478 0.00 0.00 0.00 3.01
3143 3467 3.053619 ACACTCCAAGTTCCCAACTCTTT 60.054 43.478 0.00 0.00 41.91 2.52
3166 3490 7.458409 TTTCAAGAGCTTTATCATTCTTGCT 57.542 32.000 7.92 0.00 43.77 3.91
3187 3516 3.626977 TGTTTGCAAACTATCTGTTGCG 58.373 40.909 35.09 0.00 39.13 4.85
3207 3536 4.941263 TGCGACAAGAGCATAAAAATACCT 59.059 37.500 0.00 0.00 40.01 3.08
3210 3539 5.584649 CGACAAGAGCATAAAAATACCTCCA 59.415 40.000 0.00 0.00 0.00 3.86
3212 3541 7.201732 CGACAAGAGCATAAAAATACCTCCAAT 60.202 37.037 0.00 0.00 0.00 3.16
3244 3573 3.200605 TCCTACATTGCATGACTGATGGT 59.799 43.478 0.00 0.00 31.99 3.55
3245 3574 3.314357 CCTACATTGCATGACTGATGGTG 59.686 47.826 0.00 0.00 31.99 4.17
3246 3575 2.799017 ACATTGCATGACTGATGGTGT 58.201 42.857 0.00 0.00 31.99 4.16
3249 3578 0.691904 TGCATGACTGATGGTGTCCA 59.308 50.000 0.00 0.00 38.19 4.02
3319 3683 0.392060 CACCAAACTACGGTAGCCCC 60.392 60.000 14.91 0.00 34.02 5.80
3349 3713 1.938585 TCGTCAAGGATCTCAACCCT 58.061 50.000 0.00 0.00 0.00 4.34
3358 3722 2.644676 GATCTCAACCCTTGCCTAACC 58.355 52.381 0.00 0.00 0.00 2.85
3386 3750 1.067821 CCAAGAGCAGATCCGAGGTAC 59.932 57.143 0.00 0.00 0.00 3.34
3389 3753 1.112113 GAGCAGATCCGAGGTACCAA 58.888 55.000 15.94 0.00 0.00 3.67
3390 3754 1.067821 GAGCAGATCCGAGGTACCAAG 59.932 57.143 15.94 7.18 0.00 3.61
3393 3757 0.032017 AGATCCGAGGTACCAAGGCT 60.032 55.000 15.94 8.22 0.00 4.58
3394 3758 0.105039 GATCCGAGGTACCAAGGCTG 59.895 60.000 15.94 0.00 0.00 4.85
3395 3759 0.617820 ATCCGAGGTACCAAGGCTGT 60.618 55.000 15.94 3.81 0.00 4.40
3396 3760 0.834687 TCCGAGGTACCAAGGCTGTT 60.835 55.000 15.94 0.00 0.00 3.16
3399 3763 1.542547 CGAGGTACCAAGGCTGTTTGT 60.543 52.381 15.94 0.00 0.00 2.83
3419 3783 2.877168 GTCAGCACAATCTCCATCCATC 59.123 50.000 0.00 0.00 0.00 3.51
3422 3786 3.952323 CAGCACAATCTCCATCCATCTTT 59.048 43.478 0.00 0.00 0.00 2.52
3426 3792 3.528905 ACAATCTCCATCCATCTTTCCCA 59.471 43.478 0.00 0.00 0.00 4.37
3433 3799 5.316167 TCCATCCATCTTTCCCATATTTCG 58.684 41.667 0.00 0.00 0.00 3.46
3439 3805 5.368145 CATCTTTCCCATATTTCGTCCTCA 58.632 41.667 0.00 0.00 0.00 3.86
3450 3816 0.036732 TCGTCCTCAAGCAGCCAAAT 59.963 50.000 0.00 0.00 0.00 2.32
3466 3833 5.010719 CAGCCAAATGCATTATCCTCATCTT 59.989 40.000 13.39 0.00 44.83 2.40
3469 3836 6.461927 GCCAAATGCATTATCCTCATCTTGAA 60.462 38.462 13.39 0.00 40.77 2.69
3471 3838 7.417003 CCAAATGCATTATCCTCATCTTGAACA 60.417 37.037 13.39 0.00 0.00 3.18
3474 3841 6.358991 TGCATTATCCTCATCTTGAACATGA 58.641 36.000 0.00 0.00 0.00 3.07
3493 3860 3.740115 TGAAACTTCTTGCCAGGAGTAC 58.260 45.455 0.00 0.00 38.00 2.73
3716 4083 5.388061 CGTCAGAGTTGTTGTGTAATAACGG 60.388 44.000 0.00 0.00 41.24 4.44
3719 4086 4.212636 AGAGTTGTTGTGTAATAACGGTGC 59.787 41.667 0.00 0.00 41.24 5.01
3720 4087 4.131596 AGTTGTTGTGTAATAACGGTGCT 58.868 39.130 0.00 0.00 41.24 4.40
3721 4088 5.299148 AGTTGTTGTGTAATAACGGTGCTA 58.701 37.500 0.00 0.00 41.24 3.49
3730 4098 4.402056 AATAACGGTGCTAGTGCTATGT 57.598 40.909 0.00 0.00 40.48 2.29
3732 4100 2.010145 ACGGTGCTAGTGCTATGTTG 57.990 50.000 0.00 0.00 40.48 3.33
3736 4104 2.350522 GTGCTAGTGCTATGTTGTGCT 58.649 47.619 0.00 0.00 40.48 4.40
3749 4117 1.590610 TTGTGCTTGCGTGTGGTTGT 61.591 50.000 0.00 0.00 0.00 3.32
3750 4118 1.138671 GTGCTTGCGTGTGGTTGTT 59.861 52.632 0.00 0.00 0.00 2.83
3762 4130 4.553938 CGTGTGGTTGTTATCTTGGTTGTC 60.554 45.833 0.00 0.00 0.00 3.18
3784 4152 5.011023 GTCCTTTGGTTCTTGATGGTTGATT 59.989 40.000 0.00 0.00 0.00 2.57
3785 4153 5.010922 TCCTTTGGTTCTTGATGGTTGATTG 59.989 40.000 0.00 0.00 0.00 2.67
3787 4155 2.562298 TGGTTCTTGATGGTTGATTGCC 59.438 45.455 0.00 0.00 0.00 4.52
3788 4156 2.827921 GGTTCTTGATGGTTGATTGCCT 59.172 45.455 0.00 0.00 0.00 4.75
3789 4157 3.259123 GGTTCTTGATGGTTGATTGCCTT 59.741 43.478 0.00 0.00 0.00 4.35
3791 4159 4.038271 TCTTGATGGTTGATTGCCTTCT 57.962 40.909 0.00 0.00 33.07 2.85
3792 4160 3.760151 TCTTGATGGTTGATTGCCTTCTG 59.240 43.478 0.00 0.00 33.07 3.02
3861 4229 0.368907 CCGTAATGTTTCGCTCGTGG 59.631 55.000 0.00 0.00 0.00 4.94
3875 4243 2.350772 GCTCGTGGTTTCTGAATTGTGG 60.351 50.000 0.00 0.00 0.00 4.17
3876 4244 2.226330 TCGTGGTTTCTGAATTGTGGG 58.774 47.619 0.00 0.00 0.00 4.61
3878 4246 2.819608 CGTGGTTTCTGAATTGTGGGAT 59.180 45.455 0.00 0.00 0.00 3.85
3881 4249 3.165071 GGTTTCTGAATTGTGGGATGGT 58.835 45.455 0.00 0.00 0.00 3.55
3882 4250 4.202620 TGGTTTCTGAATTGTGGGATGGTA 60.203 41.667 0.00 0.00 0.00 3.25
3883 4251 4.956075 GGTTTCTGAATTGTGGGATGGTAT 59.044 41.667 0.00 0.00 0.00 2.73
3951 4319 6.727824 AACTTTGATCATAGTTTGACGAGG 57.272 37.500 21.52 0.00 37.11 4.63
3952 4320 4.631813 ACTTTGATCATAGTTTGACGAGGC 59.368 41.667 12.47 0.00 37.11 4.70
3969 4337 4.019591 ACGAGGCTAACAAAATACTCCCTT 60.020 41.667 0.00 0.00 0.00 3.95
3974 4342 5.182570 GGCTAACAAAATACTCCCTTCGTTT 59.817 40.000 0.00 0.00 0.00 3.60
4010 4378 4.515944 TGCAAAAATTTCCATGAAAGCCAG 59.484 37.500 0.00 0.00 34.92 4.85
4012 4380 5.413523 GCAAAAATTTCCATGAAAGCCAGAT 59.586 36.000 0.00 0.00 34.92 2.90
4013 4381 6.594937 GCAAAAATTTCCATGAAAGCCAGATA 59.405 34.615 0.00 0.00 34.92 1.98
4019 4387 4.264253 TCCATGAAAGCCAGATACACAAG 58.736 43.478 0.00 0.00 0.00 3.16
4060 4429 5.221521 CCCCCTCCTTTTTCTTTCTCTTTTG 60.222 44.000 0.00 0.00 0.00 2.44
4061 4430 5.363868 CCCCTCCTTTTTCTTTCTCTTTTGT 59.636 40.000 0.00 0.00 0.00 2.83
4062 4431 6.461648 CCCCTCCTTTTTCTTTCTCTTTTGTC 60.462 42.308 0.00 0.00 0.00 3.18
4063 4432 6.322456 CCCTCCTTTTTCTTTCTCTTTTGTCT 59.678 38.462 0.00 0.00 0.00 3.41
4064 4433 7.421599 CCTCCTTTTTCTTTCTCTTTTGTCTC 58.578 38.462 0.00 0.00 0.00 3.36
4065 4434 7.016361 TCCTTTTTCTTTCTCTTTTGTCTCG 57.984 36.000 0.00 0.00 0.00 4.04
4066 4435 6.598064 TCCTTTTTCTTTCTCTTTTGTCTCGT 59.402 34.615 0.00 0.00 0.00 4.18
4067 4436 6.907748 CCTTTTTCTTTCTCTTTTGTCTCGTC 59.092 38.462 0.00 0.00 0.00 4.20
4068 4437 7.201652 CCTTTTTCTTTCTCTTTTGTCTCGTCT 60.202 37.037 0.00 0.00 0.00 4.18
4069 4438 7.611213 TTTTCTTTCTCTTTTGTCTCGTCTT 57.389 32.000 0.00 0.00 0.00 3.01
4070 4439 6.830114 TTCTTTCTCTTTTGTCTCGTCTTC 57.170 37.500 0.00 0.00 0.00 2.87
4084 4453 5.923684 GTCTCGTCTTCTTTGTTCTGATTCT 59.076 40.000 0.00 0.00 0.00 2.40
4093 4462 9.339492 CTTCTTTGTTCTGATTCTAATTTGAGC 57.661 33.333 0.00 0.00 0.00 4.26
4140 4509 4.813161 GGTGTGGAGATGTTCTGTATGATG 59.187 45.833 0.00 0.00 0.00 3.07
4162 4531 0.771127 CTGGGACCTTGGTCCTTTCA 59.229 55.000 30.81 21.60 42.91 2.69
4193 4562 0.039256 GAATTGGCAGAACGCTTGCA 60.039 50.000 8.37 0.00 41.91 4.08
4200 4569 2.050077 GAACGCTTGCAGTTGCCC 60.050 61.111 1.06 0.00 41.18 5.36
4207 4576 1.537135 GCTTGCAGTTGCCCGTAAAAA 60.537 47.619 1.06 0.00 41.18 1.94
4321 4690 9.722056 CTAATGATACAAATTTGGTGTTAGAGC 57.278 33.333 21.74 2.42 0.00 4.09
4322 4691 7.701539 ATGATACAAATTTGGTGTTAGAGCA 57.298 32.000 21.74 7.40 0.00 4.26
4323 4692 7.701539 TGATACAAATTTGGTGTTAGAGCAT 57.298 32.000 21.74 0.00 0.00 3.79
4324 4693 8.121305 TGATACAAATTTGGTGTTAGAGCATT 57.879 30.769 21.74 0.00 0.00 3.56
4325 4694 8.584157 TGATACAAATTTGGTGTTAGAGCATTT 58.416 29.630 21.74 0.00 0.00 2.32
4326 4695 8.986477 ATACAAATTTGGTGTTAGAGCATTTC 57.014 30.769 21.74 0.00 0.00 2.17
4327 4696 6.223120 ACAAATTTGGTGTTAGAGCATTTCC 58.777 36.000 21.74 0.00 0.00 3.13
4328 4697 6.183360 ACAAATTTGGTGTTAGAGCATTTCCA 60.183 34.615 21.74 0.00 0.00 3.53
4329 4698 6.418057 AATTTGGTGTTAGAGCATTTCCAA 57.582 33.333 0.00 0.00 0.00 3.53
4330 4699 4.846779 TTGGTGTTAGAGCATTTCCAAC 57.153 40.909 0.00 0.00 0.00 3.77
4331 4700 3.826524 TGGTGTTAGAGCATTTCCAACA 58.173 40.909 0.00 0.00 35.48 3.33
4332 4701 3.820467 TGGTGTTAGAGCATTTCCAACAG 59.180 43.478 0.00 0.00 37.95 3.16
4333 4702 3.366374 GGTGTTAGAGCATTTCCAACAGC 60.366 47.826 2.89 2.89 44.38 4.40
4334 4703 3.503748 GTGTTAGAGCATTTCCAACAGCT 59.496 43.478 0.00 0.00 37.95 4.24
4335 4704 3.503363 TGTTAGAGCATTTCCAACAGCTG 59.497 43.478 13.48 13.48 33.38 4.24
4336 4705 0.886563 AGAGCATTTCCAACAGCTGC 59.113 50.000 15.27 0.00 37.48 5.25
4337 4706 0.455633 GAGCATTTCCAACAGCTGCG 60.456 55.000 15.27 5.03 37.48 5.18
4338 4707 2.090524 GCATTTCCAACAGCTGCGC 61.091 57.895 15.27 0.00 0.00 6.09
4339 4708 1.582968 CATTTCCAACAGCTGCGCT 59.417 52.632 15.27 0.00 40.77 5.92
4340 4709 0.804364 CATTTCCAACAGCTGCGCTA 59.196 50.000 15.27 0.00 36.40 4.26
4341 4710 1.199789 CATTTCCAACAGCTGCGCTAA 59.800 47.619 15.27 2.39 36.40 3.09
4342 4711 1.313772 TTTCCAACAGCTGCGCTAAA 58.686 45.000 15.27 7.20 36.40 1.85
4343 4712 1.533625 TTCCAACAGCTGCGCTAAAT 58.466 45.000 15.27 0.00 36.40 1.40
4344 4713 0.804364 TCCAACAGCTGCGCTAAATG 59.196 50.000 15.27 4.89 36.40 2.32
4345 4714 0.804364 CCAACAGCTGCGCTAAATGA 59.196 50.000 15.27 0.00 36.40 2.57
4346 4715 1.202110 CCAACAGCTGCGCTAAATGAG 60.202 52.381 15.27 0.00 36.40 2.90
4377 4746 3.454042 CAAATTTGCCCTTTTTAGCGC 57.546 42.857 5.01 0.00 0.00 5.92
4378 4747 1.708822 AATTTGCCCTTTTTAGCGCG 58.291 45.000 0.00 0.00 0.00 6.86
4379 4748 0.735978 ATTTGCCCTTTTTAGCGCGC 60.736 50.000 26.66 26.66 0.00 6.86
4380 4749 3.602924 TTGCCCTTTTTAGCGCGCG 62.603 57.895 28.44 28.44 0.00 6.86
4393 4762 3.860125 GCGCGCGCAATTGGTAGA 61.860 61.111 46.11 0.00 41.49 2.59
4394 4763 2.321060 CGCGCGCAATTGGTAGAG 59.679 61.111 32.61 6.38 0.00 2.43
4395 4764 2.709475 GCGCGCAATTGGTAGAGG 59.291 61.111 29.10 0.00 0.00 3.69
4396 4765 2.823829 GCGCGCAATTGGTAGAGGG 61.824 63.158 29.10 0.00 0.00 4.30
4397 4766 2.180204 CGCGCAATTGGTAGAGGGG 61.180 63.158 8.75 0.00 0.00 4.79
4398 4767 2.481471 GCGCAATTGGTAGAGGGGC 61.481 63.158 0.30 0.00 0.00 5.80
4399 4768 1.224592 CGCAATTGGTAGAGGGGCT 59.775 57.895 7.72 0.00 0.00 5.19
4400 4769 0.815615 CGCAATTGGTAGAGGGGCTC 60.816 60.000 7.72 0.00 0.00 4.70
4401 4770 0.466372 GCAATTGGTAGAGGGGCTCC 60.466 60.000 7.72 0.00 0.00 4.70
4402 4771 0.918983 CAATTGGTAGAGGGGCTCCA 59.081 55.000 4.79 0.00 34.83 3.86
4403 4772 1.133976 CAATTGGTAGAGGGGCTCCAG 60.134 57.143 4.79 0.00 34.83 3.86
4404 4773 1.348775 ATTGGTAGAGGGGCTCCAGC 61.349 60.000 4.79 0.00 41.14 4.85
4405 4774 3.541713 GGTAGAGGGGCTCCAGCG 61.542 72.222 4.79 0.00 43.26 5.18
4406 4775 3.541713 GTAGAGGGGCTCCAGCGG 61.542 72.222 4.79 0.00 43.26 5.52
4407 4776 3.751018 TAGAGGGGCTCCAGCGGA 61.751 66.667 4.79 0.00 43.26 5.54
4408 4777 3.088090 TAGAGGGGCTCCAGCGGAT 62.088 63.158 4.79 0.00 43.26 4.18
4409 4778 4.247380 GAGGGGCTCCAGCGGATG 62.247 72.222 4.79 0.00 43.26 3.51
4437 4806 2.733218 GCACGCGCGGCATATAGA 60.733 61.111 35.22 0.00 0.00 1.98
4438 4807 2.720758 GCACGCGCGGCATATAGAG 61.721 63.158 35.22 12.26 0.00 2.43
4439 4808 1.371758 CACGCGCGGCATATAGAGT 60.372 57.895 35.22 5.42 0.00 3.24
4440 4809 0.939577 CACGCGCGGCATATAGAGTT 60.940 55.000 35.22 4.80 0.00 3.01
4441 4810 0.939577 ACGCGCGGCATATAGAGTTG 60.940 55.000 35.22 0.47 0.00 3.16
4442 4811 1.617755 CGCGCGGCATATAGAGTTGG 61.618 60.000 24.84 0.00 0.00 3.77
4443 4812 0.319555 GCGCGGCATATAGAGTTGGA 60.320 55.000 8.83 0.00 0.00 3.53
4444 4813 1.419374 CGCGGCATATAGAGTTGGAC 58.581 55.000 0.00 0.00 0.00 4.02
4445 4814 1.419374 GCGGCATATAGAGTTGGACG 58.581 55.000 0.00 0.00 0.00 4.79
4446 4815 1.419374 CGGCATATAGAGTTGGACGC 58.581 55.000 0.00 0.00 0.00 5.19
4447 4816 1.419374 GGCATATAGAGTTGGACGCG 58.581 55.000 3.53 3.53 0.00 6.01
4448 4817 0.784778 GCATATAGAGTTGGACGCGC 59.215 55.000 5.73 0.00 0.00 6.86
4449 4818 1.053048 CATATAGAGTTGGACGCGCG 58.947 55.000 30.96 30.96 0.00 6.86
4450 4819 0.039437 ATATAGAGTTGGACGCGCGG 60.039 55.000 35.22 16.31 0.00 6.46
4451 4820 1.378882 TATAGAGTTGGACGCGCGGT 61.379 55.000 35.22 19.76 0.00 5.68
4452 4821 2.609183 ATAGAGTTGGACGCGCGGTC 62.609 60.000 35.22 26.18 45.31 4.79
4464 4833 3.338676 GCGGTCCGAATCGCCATC 61.339 66.667 17.49 0.00 45.42 3.51
4465 4834 3.030308 CGGTCCGAATCGCCATCG 61.030 66.667 4.91 0.00 39.92 3.84
4466 4835 3.338676 GGTCCGAATCGCCATCGC 61.339 66.667 0.00 0.00 38.93 4.58
4476 4845 3.483665 GCCATCGCGCGTTGTGTA 61.484 61.111 31.84 14.14 0.00 2.90
4477 4846 2.808958 GCCATCGCGCGTTGTGTAT 61.809 57.895 31.84 15.78 0.00 2.29
4478 4847 1.713246 CCATCGCGCGTTGTGTATT 59.287 52.632 31.84 7.57 0.00 1.89
4479 4848 0.096281 CCATCGCGCGTTGTGTATTT 59.904 50.000 31.84 6.63 0.00 1.40
4480 4849 1.171052 CATCGCGCGTTGTGTATTTG 58.829 50.000 30.98 10.28 0.00 2.32
4481 4850 0.096281 ATCGCGCGTTGTGTATTTGG 59.904 50.000 30.98 0.00 0.00 3.28
4482 4851 1.205568 CGCGCGTTGTGTATTTGGT 59.794 52.632 24.19 0.00 0.00 3.67
4483 4852 1.057526 CGCGCGTTGTGTATTTGGTG 61.058 55.000 24.19 0.00 0.00 4.17
4484 4853 1.334288 GCGCGTTGTGTATTTGGTGC 61.334 55.000 8.43 0.00 0.00 5.01
4485 4854 1.057526 CGCGTTGTGTATTTGGTGCG 61.058 55.000 0.00 0.00 38.28 5.34
4486 4855 1.334288 GCGTTGTGTATTTGGTGCGC 61.334 55.000 0.00 0.00 36.97 6.09
4487 4856 1.057526 CGTTGTGTATTTGGTGCGCG 61.058 55.000 0.00 0.00 0.00 6.86
4488 4857 1.081774 TTGTGTATTTGGTGCGCGC 60.082 52.632 27.26 27.26 0.00 6.86
4489 4858 2.573167 GTGTATTTGGTGCGCGCG 60.573 61.111 28.44 28.44 0.00 6.86
4490 4859 4.453183 TGTATTTGGTGCGCGCGC 62.453 61.111 45.02 45.02 42.35 6.86
4531 4900 3.821055 GCTCGAGCCGCACTCTCT 61.821 66.667 27.22 0.00 43.85 3.10
4532 4901 2.407210 CTCGAGCCGCACTCTCTC 59.593 66.667 0.00 0.00 43.85 3.20
4533 4902 3.119709 CTCGAGCCGCACTCTCTCC 62.120 68.421 0.00 0.00 43.85 3.71
4534 4903 3.443925 CGAGCCGCACTCTCTCCA 61.444 66.667 0.00 0.00 43.85 3.86
4535 4904 2.183046 GAGCCGCACTCTCTCCAC 59.817 66.667 0.00 0.00 42.62 4.02
4536 4905 3.363844 GAGCCGCACTCTCTCCACC 62.364 68.421 0.00 0.00 42.62 4.61
4537 4906 4.803426 GCCGCACTCTCTCCACCG 62.803 72.222 0.00 0.00 0.00 4.94
4538 4907 3.374402 CCGCACTCTCTCCACCGT 61.374 66.667 0.00 0.00 0.00 4.83
4539 4908 2.126307 CGCACTCTCTCCACCGTG 60.126 66.667 0.00 0.00 0.00 4.94
4540 4909 2.433318 GCACTCTCTCCACCGTGC 60.433 66.667 0.00 0.00 44.73 5.34
4541 4910 2.262915 CACTCTCTCCACCGTGCC 59.737 66.667 0.00 0.00 0.00 5.01
4542 4911 2.203640 ACTCTCTCCACCGTGCCA 60.204 61.111 0.00 0.00 0.00 4.92
4543 4912 2.262915 CTCTCTCCACCGTGCCAC 59.737 66.667 0.00 0.00 0.00 5.01
4544 4913 3.302347 CTCTCTCCACCGTGCCACC 62.302 68.421 0.00 0.00 0.00 4.61
4545 4914 3.314331 CTCTCCACCGTGCCACCT 61.314 66.667 0.00 0.00 0.00 4.00
4546 4915 2.847234 TCTCCACCGTGCCACCTT 60.847 61.111 0.00 0.00 0.00 3.50
4547 4916 2.113139 CTCCACCGTGCCACCTTT 59.887 61.111 0.00 0.00 0.00 3.11
4548 4917 2.203280 TCCACCGTGCCACCTTTG 60.203 61.111 0.00 0.00 0.00 2.77
4549 4918 3.977244 CCACCGTGCCACCTTTGC 61.977 66.667 0.00 0.00 0.00 3.68
4550 4919 3.977244 CACCGTGCCACCTTTGCC 61.977 66.667 0.00 0.00 0.00 4.52
4553 4922 4.974721 CGTGCCACCTTTGCCCCT 62.975 66.667 0.00 0.00 0.00 4.79
4554 4923 2.991540 GTGCCACCTTTGCCCCTC 60.992 66.667 0.00 0.00 0.00 4.30
4555 4924 3.506743 TGCCACCTTTGCCCCTCA 61.507 61.111 0.00 0.00 0.00 3.86
4556 4925 2.991540 GCCACCTTTGCCCCTCAC 60.992 66.667 0.00 0.00 0.00 3.51
4557 4926 2.672996 CCACCTTTGCCCCTCACG 60.673 66.667 0.00 0.00 0.00 4.35
4558 4927 3.365265 CACCTTTGCCCCTCACGC 61.365 66.667 0.00 0.00 0.00 5.34
4591 4960 4.162690 CCTAGCGCGGGGAGCTTT 62.163 66.667 8.83 0.00 43.24 3.51
4592 4961 2.892425 CTAGCGCGGGGAGCTTTG 60.892 66.667 8.83 0.00 43.24 2.77
4593 4962 4.467084 TAGCGCGGGGAGCTTTGG 62.467 66.667 8.83 0.00 43.24 3.28
4624 4993 2.579738 GGAGTTCCTCCGAGCACC 59.420 66.667 0.00 0.00 41.08 5.01
4625 4994 2.182030 GAGTTCCTCCGAGCACCG 59.818 66.667 0.00 0.00 38.18 4.94
4637 5006 2.516930 GCACCGGCATGCTACCAT 60.517 61.111 18.92 0.00 42.62 3.55
4644 5013 3.289834 CATGCTACCATGGGCGGC 61.290 66.667 18.09 16.67 44.07 6.53
4645 5014 3.807839 ATGCTACCATGGGCGGCA 61.808 61.111 23.63 23.63 37.72 5.69
4646 5015 3.137385 ATGCTACCATGGGCGGCAT 62.137 57.895 25.29 25.29 38.59 4.40
4647 5016 3.289834 GCTACCATGGGCGGCATG 61.290 66.667 18.09 12.40 0.00 4.06
4653 5022 4.820744 ATGGGCGGCATGGGTGTC 62.821 66.667 12.47 0.00 0.00 3.67
4655 5024 4.820744 GGGCGGCATGGGTGTCAT 62.821 66.667 12.47 0.00 36.31 3.06
4662 5031 2.360191 ATGGGTGTCATGGGTGGC 59.640 61.111 0.00 0.00 34.22 5.01
4663 5032 2.240918 ATGGGTGTCATGGGTGGCT 61.241 57.895 0.00 0.00 34.22 4.75
4664 5033 1.803453 ATGGGTGTCATGGGTGGCTT 61.803 55.000 0.00 0.00 34.22 4.35
4665 5034 1.228862 GGGTGTCATGGGTGGCTTT 60.229 57.895 0.00 0.00 0.00 3.51
4666 5035 1.535204 GGGTGTCATGGGTGGCTTTG 61.535 60.000 0.00 0.00 0.00 2.77
4667 5036 1.535204 GGTGTCATGGGTGGCTTTGG 61.535 60.000 0.00 0.00 0.00 3.28
4668 5037 0.539438 GTGTCATGGGTGGCTTTGGA 60.539 55.000 0.00 0.00 0.00 3.53
4669 5038 0.251297 TGTCATGGGTGGCTTTGGAG 60.251 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.533831 AATAGGACATCTGAAGTTTTTATTGGT 57.466 29.630 0.00 0.00 0.00 3.67
42 43 9.750125 GTTTGAAAATAGGACATCTGAAGTTTT 57.250 29.630 0.00 0.00 0.00 2.43
43 44 8.360390 GGTTTGAAAATAGGACATCTGAAGTTT 58.640 33.333 0.00 0.00 0.00 2.66
44 45 7.308589 CGGTTTGAAAATAGGACATCTGAAGTT 60.309 37.037 0.00 0.00 0.00 2.66
45 46 6.149474 CGGTTTGAAAATAGGACATCTGAAGT 59.851 38.462 0.00 0.00 0.00 3.01
46 47 6.149474 ACGGTTTGAAAATAGGACATCTGAAG 59.851 38.462 0.00 0.00 0.00 3.02
47 48 6.001460 ACGGTTTGAAAATAGGACATCTGAA 58.999 36.000 0.00 0.00 0.00 3.02
48 49 5.556915 ACGGTTTGAAAATAGGACATCTGA 58.443 37.500 0.00 0.00 0.00 3.27
49 50 5.880054 ACGGTTTGAAAATAGGACATCTG 57.120 39.130 0.00 0.00 0.00 2.90
50 51 9.847224 ATTATACGGTTTGAAAATAGGACATCT 57.153 29.630 0.00 0.00 0.00 2.90
95 96 8.949421 AGGTTGTCAATCTTATCACCCTAATAT 58.051 33.333 0.00 0.00 0.00 1.28
96 97 8.331931 AGGTTGTCAATCTTATCACCCTAATA 57.668 34.615 0.00 0.00 0.00 0.98
97 98 7.213178 AGGTTGTCAATCTTATCACCCTAAT 57.787 36.000 0.00 0.00 0.00 1.73
98 99 6.636454 AGGTTGTCAATCTTATCACCCTAA 57.364 37.500 0.00 0.00 0.00 2.69
99 100 7.130099 TCTAGGTTGTCAATCTTATCACCCTA 58.870 38.462 3.09 0.00 0.00 3.53
100 101 5.964477 TCTAGGTTGTCAATCTTATCACCCT 59.036 40.000 3.09 0.00 0.00 4.34
101 102 6.235231 TCTAGGTTGTCAATCTTATCACCC 57.765 41.667 3.09 0.00 0.00 4.61
105 106 9.291664 GCGTATATCTAGGTTGTCAATCTTATC 57.708 37.037 3.09 0.00 0.00 1.75
106 107 7.968956 CGCGTATATCTAGGTTGTCAATCTTAT 59.031 37.037 3.09 1.57 0.00 1.73
107 108 7.303261 CGCGTATATCTAGGTTGTCAATCTTA 58.697 38.462 3.09 0.00 0.00 2.10
108 109 6.150318 CGCGTATATCTAGGTTGTCAATCTT 58.850 40.000 3.09 0.00 0.00 2.40
109 110 5.700846 CGCGTATATCTAGGTTGTCAATCT 58.299 41.667 3.34 3.34 0.00 2.40
110 111 4.323868 GCGCGTATATCTAGGTTGTCAATC 59.676 45.833 8.43 0.00 0.00 2.67
111 112 4.235360 GCGCGTATATCTAGGTTGTCAAT 58.765 43.478 8.43 0.00 0.00 2.57
112 113 3.635331 GCGCGTATATCTAGGTTGTCAA 58.365 45.455 8.43 0.00 0.00 3.18
113 114 2.350102 CGCGCGTATATCTAGGTTGTCA 60.350 50.000 24.19 0.00 0.00 3.58
114 115 2.240040 CGCGCGTATATCTAGGTTGTC 58.760 52.381 24.19 0.00 0.00 3.18
115 116 1.068748 CCGCGCGTATATCTAGGTTGT 60.069 52.381 29.95 0.00 0.00 3.32
116 117 1.614385 CCGCGCGTATATCTAGGTTG 58.386 55.000 29.95 4.04 0.00 3.77
117 118 0.524862 CCCGCGCGTATATCTAGGTT 59.475 55.000 29.95 0.00 0.00 3.50
118 119 0.321919 TCCCGCGCGTATATCTAGGT 60.322 55.000 29.95 0.00 0.00 3.08
119 120 0.098376 GTCCCGCGCGTATATCTAGG 59.902 60.000 29.95 19.54 0.00 3.02
120 121 1.085091 AGTCCCGCGCGTATATCTAG 58.915 55.000 29.95 10.39 0.00 2.43
121 122 1.198408 CAAGTCCCGCGCGTATATCTA 59.802 52.381 29.95 2.33 0.00 1.98
122 123 0.039437 CAAGTCCCGCGCGTATATCT 60.039 55.000 29.95 15.68 0.00 1.98
123 124 0.318445 ACAAGTCCCGCGCGTATATC 60.318 55.000 29.95 13.66 0.00 1.63
124 125 0.953727 TACAAGTCCCGCGCGTATAT 59.046 50.000 29.95 9.15 0.00 0.86
125 126 0.737804 TTACAAGTCCCGCGCGTATA 59.262 50.000 29.95 10.69 0.00 1.47
126 127 0.108709 TTTACAAGTCCCGCGCGTAT 60.109 50.000 29.95 8.35 0.00 3.06
127 128 1.008361 GTTTACAAGTCCCGCGCGTA 61.008 55.000 29.95 14.01 0.00 4.42
128 129 2.029369 TTTACAAGTCCCGCGCGT 59.971 55.556 29.95 10.84 0.00 6.01
129 130 0.733566 TAGTTTACAAGTCCCGCGCG 60.734 55.000 25.67 25.67 0.00 6.86
130 131 1.127397 GTTAGTTTACAAGTCCCGCGC 59.873 52.381 0.00 0.00 0.00 6.86
131 132 1.387756 CGTTAGTTTACAAGTCCCGCG 59.612 52.381 0.00 0.00 0.00 6.46
132 133 1.728425 CCGTTAGTTTACAAGTCCCGC 59.272 52.381 0.00 0.00 0.00 6.13
133 134 3.248266 CTCCGTTAGTTTACAAGTCCCG 58.752 50.000 0.00 0.00 0.00 5.14
134 135 3.593096 CCTCCGTTAGTTTACAAGTCCC 58.407 50.000 0.00 0.00 0.00 4.46
135 136 3.259123 TCCCTCCGTTAGTTTACAAGTCC 59.741 47.826 0.00 0.00 0.00 3.85
136 137 4.021632 ACTCCCTCCGTTAGTTTACAAGTC 60.022 45.833 0.00 0.00 0.00 3.01
137 138 3.899980 ACTCCCTCCGTTAGTTTACAAGT 59.100 43.478 0.00 0.00 0.00 3.16
138 139 4.532314 ACTCCCTCCGTTAGTTTACAAG 57.468 45.455 0.00 0.00 0.00 3.16
139 140 4.082026 GCTACTCCCTCCGTTAGTTTACAA 60.082 45.833 0.00 0.00 0.00 2.41
140 141 3.445096 GCTACTCCCTCCGTTAGTTTACA 59.555 47.826 0.00 0.00 0.00 2.41
141 142 3.698539 AGCTACTCCCTCCGTTAGTTTAC 59.301 47.826 0.00 0.00 0.00 2.01
142 143 3.973425 AGCTACTCCCTCCGTTAGTTTA 58.027 45.455 0.00 0.00 0.00 2.01
143 144 2.817665 AGCTACTCCCTCCGTTAGTTT 58.182 47.619 0.00 0.00 0.00 2.66
144 145 2.528673 AGCTACTCCCTCCGTTAGTT 57.471 50.000 0.00 0.00 0.00 2.24
145 146 2.776536 TCTAGCTACTCCCTCCGTTAGT 59.223 50.000 0.00 0.00 0.00 2.24
146 147 3.488778 TCTAGCTACTCCCTCCGTTAG 57.511 52.381 0.00 0.00 0.00 2.34
147 148 3.549794 GTTCTAGCTACTCCCTCCGTTA 58.450 50.000 0.00 0.00 0.00 3.18
148 149 2.377073 GTTCTAGCTACTCCCTCCGTT 58.623 52.381 0.00 0.00 0.00 4.44
149 150 1.409942 GGTTCTAGCTACTCCCTCCGT 60.410 57.143 0.00 0.00 0.00 4.69
150 151 1.133730 AGGTTCTAGCTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
151 152 2.312390 CAGGTTCTAGCTACTCCCTCC 58.688 57.143 0.00 0.00 0.00 4.30
152 153 3.021177 ACAGGTTCTAGCTACTCCCTC 57.979 52.381 0.00 0.00 0.00 4.30
153 154 4.817874 ATACAGGTTCTAGCTACTCCCT 57.182 45.455 0.00 0.00 0.00 4.20
154 155 5.706833 GTCTATACAGGTTCTAGCTACTCCC 59.293 48.000 0.00 0.00 0.00 4.30
155 156 6.297582 TGTCTATACAGGTTCTAGCTACTCC 58.702 44.000 0.00 0.00 0.00 3.85
156 157 7.989416 ATGTCTATACAGGTTCTAGCTACTC 57.011 40.000 0.00 0.00 39.49 2.59
157 158 9.863650 TTTATGTCTATACAGGTTCTAGCTACT 57.136 33.333 0.00 0.00 39.49 2.57
210 211 8.413229 GCAGAAAATCACCATATTAAAGGCTAA 58.587 33.333 0.00 0.00 0.00 3.09
222 223 7.472334 AGAGTTAAATGCAGAAAATCACCAT 57.528 32.000 0.00 0.00 0.00 3.55
268 269 2.723124 TTTTCCCGCAAAAGATCAGC 57.277 45.000 0.00 0.00 30.07 4.26
289 290 6.073314 AGCATGGCATTTATAAGAGTCCATT 58.927 36.000 0.00 0.00 31.11 3.16
290 291 5.638133 AGCATGGCATTTATAAGAGTCCAT 58.362 37.500 0.00 5.37 33.51 3.41
291 292 5.052693 AGCATGGCATTTATAAGAGTCCA 57.947 39.130 0.00 0.00 0.00 4.02
292 293 5.300286 ACAAGCATGGCATTTATAAGAGTCC 59.700 40.000 0.00 0.00 0.00 3.85
293 294 6.038603 TCACAAGCATGGCATTTATAAGAGTC 59.961 38.462 0.00 0.00 0.00 3.36
294 295 5.887598 TCACAAGCATGGCATTTATAAGAGT 59.112 36.000 0.00 0.00 0.00 3.24
295 296 6.183360 TGTCACAAGCATGGCATTTATAAGAG 60.183 38.462 0.00 0.00 0.00 2.85
296 297 5.651576 TGTCACAAGCATGGCATTTATAAGA 59.348 36.000 0.00 0.00 0.00 2.10
297 298 5.745294 GTGTCACAAGCATGGCATTTATAAG 59.255 40.000 0.00 0.00 36.40 1.73
298 299 5.184671 TGTGTCACAAGCATGGCATTTATAA 59.815 36.000 2.31 0.00 36.40 0.98
299 300 4.704057 TGTGTCACAAGCATGGCATTTATA 59.296 37.500 2.31 0.00 36.40 0.98
304 305 1.330234 TTGTGTCACAAGCATGGCAT 58.670 45.000 14.48 0.00 36.40 4.40
310 311 2.751806 TCATGTGTTTGTGTCACAAGCA 59.248 40.909 25.81 25.81 44.94 3.91
318 319 3.351740 TGGAGTTGTCATGTGTTTGTGT 58.648 40.909 0.00 0.00 0.00 3.72
351 352 1.588674 CCGCACCACTAAACTTGACA 58.411 50.000 0.00 0.00 0.00 3.58
366 367 0.679640 CTAAAGTTGCCATCCCCGCA 60.680 55.000 0.00 0.00 0.00 5.69
448 451 5.606348 TTTTCCCAAATTATAAGCGGCAT 57.394 34.783 1.45 0.00 0.00 4.40
459 462 4.102996 AGACAAGTGGCATTTTCCCAAATT 59.897 37.500 0.00 0.00 33.39 1.82
508 511 2.996621 GGGTTTTCAGATCACTCGAGTG 59.003 50.000 34.76 34.76 46.91 3.51
509 512 2.028020 GGGGTTTTCAGATCACTCGAGT 60.028 50.000 13.58 13.58 0.00 4.18
510 513 2.622436 GGGGTTTTCAGATCACTCGAG 58.378 52.381 11.84 11.84 0.00 4.04
512 515 1.359848 CGGGGTTTTCAGATCACTCG 58.640 55.000 0.00 0.00 0.00 4.18
513 516 1.087501 GCGGGGTTTTCAGATCACTC 58.912 55.000 0.00 0.00 0.00 3.51
514 517 0.400213 TGCGGGGTTTTCAGATCACT 59.600 50.000 0.00 0.00 0.00 3.41
515 518 1.243902 TTGCGGGGTTTTCAGATCAC 58.756 50.000 0.00 0.00 0.00 3.06
516 519 1.988293 TTTGCGGGGTTTTCAGATCA 58.012 45.000 0.00 0.00 0.00 2.92
517 520 2.672714 GTTTTGCGGGGTTTTCAGATC 58.327 47.619 0.00 0.00 0.00 2.75
518 521 1.000717 CGTTTTGCGGGGTTTTCAGAT 60.001 47.619 0.00 0.00 36.85 2.90
519 522 0.382515 CGTTTTGCGGGGTTTTCAGA 59.617 50.000 0.00 0.00 36.85 3.27
520 523 1.212455 GCGTTTTGCGGGGTTTTCAG 61.212 55.000 0.00 0.00 41.69 3.02
521 524 1.227002 GCGTTTTGCGGGGTTTTCA 60.227 52.632 0.00 0.00 41.69 2.69
522 525 3.620286 GCGTTTTGCGGGGTTTTC 58.380 55.556 0.00 0.00 41.69 2.29
602 610 1.202099 TGGGGTAGCAATGTTCGGGA 61.202 55.000 0.00 0.00 0.00 5.14
604 612 1.094785 CTTGGGGTAGCAATGTTCGG 58.905 55.000 0.00 0.00 0.00 4.30
605 613 0.451783 GCTTGGGGTAGCAATGTTCG 59.548 55.000 0.00 0.00 40.89 3.95
606 614 0.451783 CGCTTGGGGTAGCAATGTTC 59.548 55.000 0.00 0.00 41.28 3.18
607 615 0.965363 CCGCTTGGGGTAGCAATGTT 60.965 55.000 0.00 0.00 41.28 2.71
608 616 1.378514 CCGCTTGGGGTAGCAATGT 60.379 57.895 0.00 0.00 41.28 2.71
609 617 1.077787 TCCGCTTGGGGTAGCAATG 60.078 57.895 3.67 0.00 41.28 2.82
610 618 1.077716 GTCCGCTTGGGGTAGCAAT 60.078 57.895 3.67 0.00 41.28 3.56
611 619 2.349755 GTCCGCTTGGGGTAGCAA 59.650 61.111 3.67 0.00 41.28 3.91
612 620 4.077184 CGTCCGCTTGGGGTAGCA 62.077 66.667 3.67 0.00 41.28 3.49
613 621 2.791501 TTTCGTCCGCTTGGGGTAGC 62.792 60.000 3.67 0.00 37.80 3.58
614 622 0.107848 ATTTCGTCCGCTTGGGGTAG 60.108 55.000 3.67 0.31 36.01 3.18
615 623 0.108041 GATTTCGTCCGCTTGGGGTA 60.108 55.000 3.67 0.00 36.01 3.69
616 624 1.376812 GATTTCGTCCGCTTGGGGT 60.377 57.895 3.67 0.00 36.01 4.95
617 625 2.112815 GGATTTCGTCCGCTTGGGG 61.113 63.158 0.00 0.00 37.23 4.96
618 626 3.497879 GGATTTCGTCCGCTTGGG 58.502 61.111 0.00 0.00 37.23 4.12
625 633 0.446616 GCTTTGTCCGGATTTCGTCC 59.553 55.000 7.81 0.00 44.10 4.79
626 634 0.094730 CGCTTTGTCCGGATTTCGTC 59.905 55.000 7.81 0.00 37.11 4.20
627 635 2.159181 CGCTTTGTCCGGATTTCGT 58.841 52.632 7.81 0.00 37.11 3.85
634 642 2.663852 AACGTCCGCTTTGTCCGG 60.664 61.111 0.00 0.00 46.88 5.14
635 643 2.851104 GAACGTCCGCTTTGTCCG 59.149 61.111 0.00 0.00 0.00 4.79
636 644 1.493134 AACGAACGTCCGCTTTGTCC 61.493 55.000 0.00 0.00 0.00 4.02
637 645 0.302589 AAACGAACGTCCGCTTTGTC 59.697 50.000 0.00 0.00 0.00 3.18
638 646 0.027063 CAAACGAACGTCCGCTTTGT 59.973 50.000 11.79 0.00 31.99 2.83
639 647 0.656205 CCAAACGAACGTCCGCTTTG 60.656 55.000 12.63 12.63 34.06 2.77
640 648 1.644913 CCAAACGAACGTCCGCTTT 59.355 52.632 0.00 0.00 0.00 3.51
641 649 2.248835 CCCAAACGAACGTCCGCTT 61.249 57.895 0.00 0.00 0.00 4.68
642 650 2.663852 CCCAAACGAACGTCCGCT 60.664 61.111 0.00 0.00 0.00 5.52
643 651 3.719144 CCCCAAACGAACGTCCGC 61.719 66.667 0.00 0.00 0.00 5.54
644 652 2.280321 ACCCCAAACGAACGTCCG 60.280 61.111 0.00 0.00 0.00 4.79
645 653 2.312436 CGACCCCAAACGAACGTCC 61.312 63.158 0.00 0.00 0.00 4.79
646 654 1.592400 ACGACCCCAAACGAACGTC 60.592 57.895 0.00 0.00 0.00 4.34
647 655 1.884004 CACGACCCCAAACGAACGT 60.884 57.895 0.00 0.00 34.40 3.99
648 656 2.932905 CACGACCCCAAACGAACG 59.067 61.111 0.00 0.00 0.00 3.95
649 657 2.635338 GCACGACCCCAAACGAAC 59.365 61.111 0.00 0.00 0.00 3.95
650 658 2.968156 CGCACGACCCCAAACGAA 60.968 61.111 0.00 0.00 0.00 3.85
651 659 4.973055 CCGCACGACCCCAAACGA 62.973 66.667 0.00 0.00 0.00 3.85
653 661 3.656045 CACCGCACGACCCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
654 662 4.939368 CCACCGCACGACCCCAAA 62.939 66.667 0.00 0.00 0.00 3.28
667 675 4.678743 GGTGAGGCCAACCCCACC 62.679 72.222 15.23 14.01 43.25 4.61
670 678 3.961414 TTCGGTGAGGCCAACCCC 61.961 66.667 19.14 6.71 36.97 4.95
671 679 2.671963 GTTCGGTGAGGCCAACCC 60.672 66.667 19.14 8.10 36.97 4.11
672 680 3.047877 CGTTCGGTGAGGCCAACC 61.048 66.667 15.97 15.97 36.97 3.77
673 681 2.280592 ACGTTCGGTGAGGCCAAC 60.281 61.111 5.01 2.02 36.97 3.77
770 782 1.399855 GCGTTTCGGGCTCTCTTTTTC 60.400 52.381 0.00 0.00 0.00 2.29
864 876 0.727398 CTTTTCGCGTGGAGGGATTC 59.273 55.000 5.77 0.00 41.64 2.52
977 996 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
978 997 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
979 998 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
980 999 5.462240 TCATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
981 1000 5.279406 CCTCATCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
982 1001 4.592351 CCTCATCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
983 1002 4.590647 TCCTCATCTCTCTCTCTCTCTCTC 59.409 50.000 0.00 0.00 0.00 3.20
984 1003 4.560739 TCCTCATCTCTCTCTCTCTCTCT 58.439 47.826 0.00 0.00 0.00 3.10
985 1004 4.963318 TCCTCATCTCTCTCTCTCTCTC 57.037 50.000 0.00 0.00 0.00 3.20
986 1005 4.103785 CCTTCCTCATCTCTCTCTCTCTCT 59.896 50.000 0.00 0.00 0.00 3.10
987 1006 4.392940 CCTTCCTCATCTCTCTCTCTCTC 58.607 52.174 0.00 0.00 0.00 3.20
988 1007 3.435601 GCCTTCCTCATCTCTCTCTCTCT 60.436 52.174 0.00 0.00 0.00 3.10
989 1008 2.887152 GCCTTCCTCATCTCTCTCTCTC 59.113 54.545 0.00 0.00 0.00 3.20
990 1009 2.749466 CGCCTTCCTCATCTCTCTCTCT 60.749 54.545 0.00 0.00 0.00 3.10
991 1010 1.608590 CGCCTTCCTCATCTCTCTCTC 59.391 57.143 0.00 0.00 0.00 3.20
992 1011 1.691196 CGCCTTCCTCATCTCTCTCT 58.309 55.000 0.00 0.00 0.00 3.10
1143 1171 4.899239 CCGCGGCCAGATCTGACC 62.899 72.222 24.62 21.03 0.00 4.02
1380 1417 2.035442 GCCGCTGTTCTTGACCTCC 61.035 63.158 0.00 0.00 0.00 4.30
1460 1497 2.125350 CGTCCTCCTGCTCCTTGC 60.125 66.667 0.00 0.00 43.25 4.01
1504 1541 0.907230 ACCTCCCTGTCCTTCTGCTC 60.907 60.000 0.00 0.00 0.00 4.26
1535 1572 4.580580 GGAGAAAAGGATGTGTGTTCAGTT 59.419 41.667 0.00 0.00 0.00 3.16
1609 1646 3.764466 AGGTCCTTGAGCCGCTCG 61.764 66.667 15.58 2.23 32.35 5.03
1642 1679 0.682532 TGAGCGTGCTGATCTCCTCT 60.683 55.000 0.00 0.00 32.98 3.69
1669 1706 2.426023 GTGTCCGGGAACAGCACT 59.574 61.111 0.00 0.00 0.00 4.40
1672 1709 4.980805 TGCGTGTCCGGGAACAGC 62.981 66.667 0.00 5.08 33.68 4.40
1688 1725 4.436998 GACGTGGAGGTCCGGCTG 62.437 72.222 0.00 0.00 39.43 4.85
1698 1735 0.686441 AATCTCATCCCGGACGTGGA 60.686 55.000 0.73 0.00 36.05 4.02
1721 1758 2.060980 GGATCTGCCCGGTGAGAGT 61.061 63.158 0.00 0.00 0.00 3.24
1772 1809 3.818961 ATGCATCACAGAAACGTCAAG 57.181 42.857 0.00 0.00 0.00 3.02
1773 1810 3.058293 GGAATGCATCACAGAAACGTCAA 60.058 43.478 0.00 0.00 0.00 3.18
1775 1812 2.744202 AGGAATGCATCACAGAAACGTC 59.256 45.455 0.00 0.00 0.00 4.34
1779 1816 2.938451 CGCTAGGAATGCATCACAGAAA 59.062 45.455 0.00 0.00 0.00 2.52
1782 1819 0.585357 GCGCTAGGAATGCATCACAG 59.415 55.000 0.00 0.00 0.00 3.66
1783 1820 0.107752 TGCGCTAGGAATGCATCACA 60.108 50.000 9.73 0.00 32.86 3.58
1784 1821 1.016627 TTGCGCTAGGAATGCATCAC 58.983 50.000 9.73 0.00 38.60 3.06
1785 1822 1.875514 GATTGCGCTAGGAATGCATCA 59.124 47.619 9.73 0.00 38.56 3.07
1786 1823 2.149578 AGATTGCGCTAGGAATGCATC 58.850 47.619 9.73 0.00 38.56 3.91
1787 1824 2.267174 AGATTGCGCTAGGAATGCAT 57.733 45.000 9.73 0.00 38.56 3.96
1788 1825 2.042686 AAGATTGCGCTAGGAATGCA 57.957 45.000 9.73 0.00 38.56 3.96
1789 1826 2.355756 TGAAAGATTGCGCTAGGAATGC 59.644 45.455 9.73 0.00 38.56 3.56
1790 1827 3.624861 ACTGAAAGATTGCGCTAGGAATG 59.375 43.478 9.73 0.00 38.56 2.67
1791 1828 3.878778 ACTGAAAGATTGCGCTAGGAAT 58.121 40.909 9.73 0.00 41.24 3.01
1799 1841 7.251704 AGATTGGTAATACTGAAAGATTGCG 57.748 36.000 0.00 0.00 37.43 4.85
1812 1854 7.051623 AGCAACCGAACATTAGATTGGTAATA 58.948 34.615 0.00 0.00 0.00 0.98
1813 1855 5.885912 AGCAACCGAACATTAGATTGGTAAT 59.114 36.000 0.00 0.00 0.00 1.89
1814 1856 5.250200 AGCAACCGAACATTAGATTGGTAA 58.750 37.500 0.00 0.00 0.00 2.85
1839 1881 0.250295 TCGGCCTTGACCTGAAACAG 60.250 55.000 0.00 0.00 0.00 3.16
1982 2024 8.706492 AACAAAATTGGCATATACACATTCAG 57.294 30.769 0.00 0.00 0.00 3.02
2000 2042 7.846644 TGTTGAAGCATCTGAAAAACAAAAT 57.153 28.000 0.00 0.00 0.00 1.82
2056 2099 7.383843 ACAACCAAAAGCAATTTACGGAATAAG 59.616 33.333 0.00 0.00 0.00 1.73
2108 2151 6.509317 AAAGAAATGTGTATTGCAAACGTG 57.491 33.333 1.71 0.00 0.00 4.49
2119 2162 4.892934 AGCAGGTTCCAAAAGAAATGTGTA 59.107 37.500 0.00 0.00 35.85 2.90
2205 2248 9.277783 GCAACAATTAATATGGATCAGAGTACT 57.722 33.333 0.00 0.00 0.00 2.73
2206 2249 9.277783 AGCAACAATTAATATGGATCAGAGTAC 57.722 33.333 0.00 0.00 0.00 2.73
2207 2250 9.276590 CAGCAACAATTAATATGGATCAGAGTA 57.723 33.333 0.00 0.00 0.00 2.59
2208 2251 7.994911 TCAGCAACAATTAATATGGATCAGAGT 59.005 33.333 0.00 0.00 0.00 3.24
2209 2252 8.387190 TCAGCAACAATTAATATGGATCAGAG 57.613 34.615 0.00 0.00 0.00 3.35
2210 2253 8.929260 ATCAGCAACAATTAATATGGATCAGA 57.071 30.769 0.00 0.00 0.00 3.27
2211 2254 9.976511 AAATCAGCAACAATTAATATGGATCAG 57.023 29.630 0.00 0.00 0.00 2.90
2259 2302 1.117150 ATTCTGGCATTGGCATGGTC 58.883 50.000 13.83 0.00 43.71 4.02
2392 2435 6.363626 CGTCCTATGTGCTCTTTCATGTATAC 59.636 42.308 0.00 0.00 0.00 1.47
2693 3008 3.129287 AGCCTTTGCAGACATATTTTCCG 59.871 43.478 0.00 0.00 41.13 4.30
2897 3212 1.547372 GCAGGCCAAAACATGAGACAT 59.453 47.619 5.01 0.00 0.00 3.06
2921 3236 7.774157 TGTGGTGTACCTGTATTCTGTTTTTAA 59.226 33.333 2.32 0.00 36.82 1.52
2928 3243 5.245531 ACAATGTGGTGTACCTGTATTCTG 58.754 41.667 2.32 0.00 36.82 3.02
3055 3377 2.812011 GTCCTTGCTAATTTGACGGTGT 59.188 45.455 0.00 0.00 0.00 4.16
3068 3390 2.208872 AGGTATGGGATTGTCCTTGCT 58.791 47.619 0.00 0.00 36.57 3.91
3122 3446 2.938956 AGAGTTGGGAACTTGGAGTG 57.061 50.000 0.00 0.00 43.03 3.51
3143 3467 6.432162 ACAGCAAGAATGATAAAGCTCTTGAA 59.568 34.615 13.39 0.00 44.93 2.69
3166 3490 3.313803 TCGCAACAGATAGTTTGCAAACA 59.686 39.130 36.46 24.90 41.30 2.83
3187 3516 7.391148 TTGGAGGTATTTTTATGCTCTTGTC 57.609 36.000 0.00 0.00 0.00 3.18
3207 3536 6.265196 GCAATGTAGGATCCATTTGTATTGGA 59.735 38.462 15.82 0.00 46.86 3.53
3210 3539 7.506599 TCATGCAATGTAGGATCCATTTGTATT 59.493 33.333 15.82 2.97 46.80 1.89
3212 3541 6.262944 GTCATGCAATGTAGGATCCATTTGTA 59.737 38.462 15.82 11.18 46.80 2.41
3244 3573 2.571202 TGACAGCACATAGGAATGGACA 59.429 45.455 0.00 0.00 37.43 4.02
3245 3574 3.266510 TGACAGCACATAGGAATGGAC 57.733 47.619 0.00 0.00 37.43 4.02
3246 3575 3.455543 TGATGACAGCACATAGGAATGGA 59.544 43.478 0.00 0.00 37.43 3.41
3249 3578 4.449131 CTGTGATGACAGCACATAGGAAT 58.551 43.478 25.46 0.00 44.42 3.01
3349 3713 1.451449 TGGAGAAAGGGGTTAGGCAA 58.549 50.000 0.00 0.00 0.00 4.52
3358 3722 2.421248 GGATCTGCTCTTGGAGAAAGGG 60.421 54.545 0.00 0.00 43.70 3.95
3393 3757 2.929641 TGGAGATTGTGCTGACAAACA 58.070 42.857 0.00 0.00 45.23 2.83
3394 3758 3.119708 GGATGGAGATTGTGCTGACAAAC 60.120 47.826 0.00 0.00 45.23 2.93
3395 3759 3.084039 GGATGGAGATTGTGCTGACAAA 58.916 45.455 0.00 0.00 45.23 2.83
3396 3760 2.040145 TGGATGGAGATTGTGCTGACAA 59.960 45.455 0.00 0.00 46.13 3.18
3399 3763 2.775960 AGATGGATGGAGATTGTGCTGA 59.224 45.455 0.00 0.00 0.00 4.26
3409 3773 5.413833 CGAAATATGGGAAAGATGGATGGAG 59.586 44.000 0.00 0.00 0.00 3.86
3411 3775 5.072741 ACGAAATATGGGAAAGATGGATGG 58.927 41.667 0.00 0.00 0.00 3.51
3419 3783 4.035675 GCTTGAGGACGAAATATGGGAAAG 59.964 45.833 0.00 0.00 0.00 2.62
3422 3786 2.503765 TGCTTGAGGACGAAATATGGGA 59.496 45.455 0.00 0.00 0.00 4.37
3426 3792 2.092968 TGGCTGCTTGAGGACGAAATAT 60.093 45.455 0.00 0.00 0.00 1.28
3433 3799 0.108945 GCATTTGGCTGCTTGAGGAC 60.109 55.000 0.00 0.00 39.12 3.85
3439 3805 3.036091 AGGATAATGCATTTGGCTGCTT 58.964 40.909 18.75 0.00 45.15 3.91
3450 3816 6.358991 TCATGTTCAAGATGAGGATAATGCA 58.641 36.000 0.00 0.00 0.00 3.96
3456 3823 7.173722 AGAAGTTTCATGTTCAAGATGAGGAT 58.826 34.615 0.00 0.00 31.52 3.24
3457 3824 6.537355 AGAAGTTTCATGTTCAAGATGAGGA 58.463 36.000 0.00 0.00 31.52 3.71
3458 3825 6.814506 AGAAGTTTCATGTTCAAGATGAGG 57.185 37.500 0.00 0.00 31.52 3.86
3466 3833 3.318839 CCTGGCAAGAAGTTTCATGTTCA 59.681 43.478 0.00 0.00 0.00 3.18
3469 3836 3.152341 CTCCTGGCAAGAAGTTTCATGT 58.848 45.455 0.00 0.00 0.00 3.21
3471 3838 3.515602 ACTCCTGGCAAGAAGTTTCAT 57.484 42.857 0.00 0.00 0.00 2.57
3474 3841 2.367567 TCGTACTCCTGGCAAGAAGTTT 59.632 45.455 0.00 0.00 0.00 2.66
3493 3860 1.753649 TGAGAGCTCAAGGATTCCTCG 59.246 52.381 17.77 0.00 36.53 4.63
3716 4083 2.350522 AGCACAACATAGCACTAGCAC 58.649 47.619 0.00 0.00 45.49 4.40
3719 4086 2.222886 CGCAAGCACAACATAGCACTAG 60.223 50.000 0.00 0.00 0.00 2.57
3720 4087 1.731709 CGCAAGCACAACATAGCACTA 59.268 47.619 0.00 0.00 0.00 2.74
3721 4088 0.518636 CGCAAGCACAACATAGCACT 59.481 50.000 0.00 0.00 0.00 4.40
3730 4098 1.138459 CAACCACACGCAAGCACAA 59.862 52.632 0.00 0.00 45.62 3.33
3732 4100 0.378962 TAACAACCACACGCAAGCAC 59.621 50.000 0.00 0.00 45.62 4.40
3736 4104 2.292016 CCAAGATAACAACCACACGCAA 59.708 45.455 0.00 0.00 0.00 4.85
3749 4117 5.701224 AGAACCAAAGGACAACCAAGATAA 58.299 37.500 0.00 0.00 38.94 1.75
3750 4118 5.319043 AGAACCAAAGGACAACCAAGATA 57.681 39.130 0.00 0.00 38.94 1.98
3762 4130 5.232463 CAATCAACCATCAAGAACCAAAGG 58.768 41.667 0.00 0.00 0.00 3.11
3784 4152 3.776969 AGAGTTCATACATCCAGAAGGCA 59.223 43.478 0.00 0.00 33.74 4.75
3785 4153 4.125703 CAGAGTTCATACATCCAGAAGGC 58.874 47.826 0.00 0.00 33.74 4.35
3787 4155 5.990386 CCATCAGAGTTCATACATCCAGAAG 59.010 44.000 0.00 0.00 0.00 2.85
3788 4156 5.426509 ACCATCAGAGTTCATACATCCAGAA 59.573 40.000 0.00 0.00 0.00 3.02
3789 4157 4.964897 ACCATCAGAGTTCATACATCCAGA 59.035 41.667 0.00 0.00 0.00 3.86
3791 4159 5.698741 AACCATCAGAGTTCATACATCCA 57.301 39.130 0.00 0.00 0.00 3.41
3792 4160 6.115446 TCAAACCATCAGAGTTCATACATCC 58.885 40.000 0.00 0.00 0.00 3.51
3861 4229 6.530019 AATACCATCCCACAATTCAGAAAC 57.470 37.500 0.00 0.00 0.00 2.78
3917 4285 4.836125 TGATCAAAGTTTGAGCCAGAAC 57.164 40.909 26.39 11.23 45.05 3.01
3920 4288 6.506500 AACTATGATCAAAGTTTGAGCCAG 57.493 37.500 26.39 23.73 45.05 4.85
3948 4316 4.571176 CGAAGGGAGTATTTTGTTAGCCTC 59.429 45.833 0.00 0.00 0.00 4.70
3949 4317 4.019591 ACGAAGGGAGTATTTTGTTAGCCT 60.020 41.667 0.00 0.00 0.00 4.58
3950 4318 4.259356 ACGAAGGGAGTATTTTGTTAGCC 58.741 43.478 0.00 0.00 0.00 3.93
3951 4319 5.874895 AACGAAGGGAGTATTTTGTTAGC 57.125 39.130 0.00 0.00 30.96 3.09
3952 4320 7.429636 TGAAACGAAGGGAGTATTTTGTTAG 57.570 36.000 0.00 0.00 32.14 2.34
3969 4337 8.873215 TTTTTGCACCTTATATTTTGAAACGA 57.127 26.923 0.00 0.00 0.00 3.85
3974 4342 9.784531 TGGAAATTTTTGCACCTTATATTTTGA 57.215 25.926 0.00 0.00 33.44 2.69
4043 4412 7.689299 AGACGAGACAAAAGAGAAAGAAAAAG 58.311 34.615 0.00 0.00 0.00 2.27
4060 4429 5.923684 AGAATCAGAACAAAGAAGACGAGAC 59.076 40.000 0.00 0.00 0.00 3.36
4061 4430 6.090483 AGAATCAGAACAAAGAAGACGAGA 57.910 37.500 0.00 0.00 0.00 4.04
4062 4431 7.875316 TTAGAATCAGAACAAAGAAGACGAG 57.125 36.000 0.00 0.00 0.00 4.18
4063 4432 8.833231 AATTAGAATCAGAACAAAGAAGACGA 57.167 30.769 0.00 0.00 0.00 4.20
4064 4433 9.322776 CAAATTAGAATCAGAACAAAGAAGACG 57.677 33.333 0.00 0.00 0.00 4.18
4067 4436 9.339492 GCTCAAATTAGAATCAGAACAAAGAAG 57.661 33.333 0.00 0.00 0.00 2.85
4068 4437 9.071276 AGCTCAAATTAGAATCAGAACAAAGAA 57.929 29.630 0.00 0.00 0.00 2.52
4069 4438 8.509690 CAGCTCAAATTAGAATCAGAACAAAGA 58.490 33.333 0.00 0.00 0.00 2.52
4070 4439 7.272948 GCAGCTCAAATTAGAATCAGAACAAAG 59.727 37.037 0.00 0.00 0.00 2.77
4084 4453 2.840038 TGAGGGAGAGCAGCTCAAATTA 59.160 45.455 24.64 3.36 45.81 1.40
4093 4462 2.901813 CTGGCTGAGGGAGAGCAG 59.098 66.667 0.00 0.00 38.27 4.24
4118 4487 4.272018 GCATCATACAGAACATCTCCACAC 59.728 45.833 0.00 0.00 0.00 3.82
4162 4531 6.313905 CGTTCTGCCAATTCATTAAGTAGAGT 59.686 38.462 0.00 0.00 0.00 3.24
4207 4576 8.934023 TCTAAAATCCTGGTCAAACATACTTT 57.066 30.769 0.00 0.00 0.00 2.66
4208 4577 8.934023 TTCTAAAATCCTGGTCAAACATACTT 57.066 30.769 0.00 0.00 0.00 2.24
4236 4605 9.913310 TGGTTTGTATTGAGGATGTTGATAATA 57.087 29.630 0.00 0.00 0.00 0.98
4238 4607 8.642935 TTGGTTTGTATTGAGGATGTTGATAA 57.357 30.769 0.00 0.00 0.00 1.75
4280 4649 9.443323 TTGTATCATTAGATCCGTCTTGAAAAA 57.557 29.630 0.00 0.00 35.87 1.94
4317 4686 0.886563 GCAGCTGTTGGAAATGCTCT 59.113 50.000 16.64 0.00 36.59 4.09
4318 4687 0.455633 CGCAGCTGTTGGAAATGCTC 60.456 55.000 16.64 0.00 36.59 4.26
4319 4688 1.582968 CGCAGCTGTTGGAAATGCT 59.417 52.632 16.64 0.00 38.63 3.79
4320 4689 4.157817 CGCAGCTGTTGGAAATGC 57.842 55.556 16.64 0.00 0.00 3.56
4357 4726 2.159854 CGCGCTAAAAAGGGCAAATTTG 60.160 45.455 14.03 14.03 46.30 2.32
4358 4727 2.065512 CGCGCTAAAAAGGGCAAATTT 58.934 42.857 5.56 0.00 46.30 1.82
4359 4728 1.708822 CGCGCTAAAAAGGGCAAATT 58.291 45.000 5.56 0.00 46.30 1.82
4360 4729 0.735978 GCGCGCTAAAAAGGGCAAAT 60.736 50.000 26.67 0.00 46.30 2.32
4361 4730 1.372375 GCGCGCTAAAAAGGGCAAA 60.372 52.632 26.67 0.00 46.30 3.68
4362 4731 2.257067 GCGCGCTAAAAAGGGCAA 59.743 55.556 26.67 0.00 46.30 4.52
4363 4732 4.096558 CGCGCGCTAAAAAGGGCA 62.097 61.111 30.48 0.00 46.30 5.36
4376 4745 3.773649 CTCTACCAATTGCGCGCGC 62.774 63.158 45.02 45.02 42.35 6.86
4377 4746 2.321060 CTCTACCAATTGCGCGCG 59.679 61.111 28.44 28.44 0.00 6.86
4378 4747 2.709475 CCTCTACCAATTGCGCGC 59.291 61.111 27.26 27.26 0.00 6.86
4379 4748 2.180204 CCCCTCTACCAATTGCGCG 61.180 63.158 0.00 0.00 0.00 6.86
4380 4749 2.481471 GCCCCTCTACCAATTGCGC 61.481 63.158 0.00 0.00 0.00 6.09
4381 4750 0.815615 GAGCCCCTCTACCAATTGCG 60.816 60.000 0.00 0.00 0.00 4.85
4382 4751 0.466372 GGAGCCCCTCTACCAATTGC 60.466 60.000 0.00 0.00 0.00 3.56
4383 4752 0.918983 TGGAGCCCCTCTACCAATTG 59.081 55.000 0.00 0.00 0.00 2.32
4384 4753 1.216990 CTGGAGCCCCTCTACCAATT 58.783 55.000 0.00 0.00 31.85 2.32
4385 4754 1.348775 GCTGGAGCCCCTCTACCAAT 61.349 60.000 0.00 0.00 34.31 3.16
4386 4755 1.995626 GCTGGAGCCCCTCTACCAA 60.996 63.158 0.00 0.00 34.31 3.67
4387 4756 2.365635 GCTGGAGCCCCTCTACCA 60.366 66.667 0.00 0.00 34.31 3.25
4388 4757 3.541713 CGCTGGAGCCCCTCTACC 61.542 72.222 0.00 0.00 37.91 3.18
4389 4758 3.541713 CCGCTGGAGCCCCTCTAC 61.542 72.222 0.00 0.00 37.91 2.59
4390 4759 3.088090 ATCCGCTGGAGCCCCTCTA 62.088 63.158 3.76 0.00 34.05 2.43
4391 4760 4.488911 ATCCGCTGGAGCCCCTCT 62.489 66.667 3.76 0.00 34.05 3.69
4392 4761 4.247380 CATCCGCTGGAGCCCCTC 62.247 72.222 3.76 0.00 34.05 4.30
4420 4789 2.720758 CTCTATATGCCGCGCGTGC 61.721 63.158 29.95 29.10 37.91 5.34
4421 4790 0.939577 AACTCTATATGCCGCGCGTG 60.940 55.000 29.95 20.72 0.00 5.34
4422 4791 0.939577 CAACTCTATATGCCGCGCGT 60.940 55.000 29.95 13.36 0.00 6.01
4423 4792 1.617755 CCAACTCTATATGCCGCGCG 61.618 60.000 25.67 25.67 0.00 6.86
4424 4793 0.319555 TCCAACTCTATATGCCGCGC 60.320 55.000 0.00 0.00 0.00 6.86
4425 4794 1.419374 GTCCAACTCTATATGCCGCG 58.581 55.000 0.00 0.00 0.00 6.46
4426 4795 1.419374 CGTCCAACTCTATATGCCGC 58.581 55.000 0.00 0.00 0.00 6.53
4427 4796 1.419374 GCGTCCAACTCTATATGCCG 58.581 55.000 0.00 0.00 0.00 5.69
4428 4797 1.419374 CGCGTCCAACTCTATATGCC 58.581 55.000 0.00 0.00 0.00 4.40
4429 4798 0.784778 GCGCGTCCAACTCTATATGC 59.215 55.000 8.43 0.00 0.00 3.14
4430 4799 1.053048 CGCGCGTCCAACTCTATATG 58.947 55.000 24.19 0.00 0.00 1.78
4431 4800 0.039437 CCGCGCGTCCAACTCTATAT 60.039 55.000 29.95 0.00 0.00 0.86
4432 4801 1.357690 CCGCGCGTCCAACTCTATA 59.642 57.895 29.95 0.00 0.00 1.31
4433 4802 2.104331 CCGCGCGTCCAACTCTAT 59.896 61.111 29.95 0.00 0.00 1.98
4434 4803 3.332493 GACCGCGCGTCCAACTCTA 62.332 63.158 29.95 0.00 35.23 2.43
4435 4804 4.719369 GACCGCGCGTCCAACTCT 62.719 66.667 29.95 0.00 35.23 3.24
4448 4817 3.030308 CGATGGCGATTCGGACCG 61.030 66.667 7.84 7.84 40.82 4.79
4449 4818 3.338676 GCGATGGCGATTCGGACC 61.339 66.667 8.34 1.97 40.82 4.46
4459 4828 2.304516 AATACACAACGCGCGATGGC 62.305 55.000 37.19 0.00 0.00 4.40
4460 4829 0.096281 AAATACACAACGCGCGATGG 59.904 50.000 37.19 28.38 0.00 3.51
4461 4830 1.171052 CAAATACACAACGCGCGATG 58.829 50.000 39.36 36.42 0.00 3.84
4462 4831 0.096281 CCAAATACACAACGCGCGAT 59.904 50.000 39.36 24.65 0.00 4.58
4463 4832 1.222766 ACCAAATACACAACGCGCGA 61.223 50.000 39.36 14.00 0.00 5.87
4464 4833 1.057526 CACCAAATACACAACGCGCG 61.058 55.000 30.96 30.96 0.00 6.86
4465 4834 1.334288 GCACCAAATACACAACGCGC 61.334 55.000 5.73 0.00 0.00 6.86
4466 4835 1.057526 CGCACCAAATACACAACGCG 61.058 55.000 3.53 3.53 35.14 6.01
4467 4836 1.334288 GCGCACCAAATACACAACGC 61.334 55.000 0.30 0.00 38.17 4.84
4468 4837 1.057526 CGCGCACCAAATACACAACG 61.058 55.000 8.75 0.00 0.00 4.10
4469 4838 1.334288 GCGCGCACCAAATACACAAC 61.334 55.000 29.10 0.00 0.00 3.32
4470 4839 1.081774 GCGCGCACCAAATACACAA 60.082 52.632 29.10 0.00 0.00 3.33
4471 4840 2.558821 GCGCGCACCAAATACACA 59.441 55.556 29.10 0.00 0.00 3.72
4472 4841 2.573167 CGCGCGCACCAAATACAC 60.573 61.111 32.61 0.00 0.00 2.90
4473 4842 4.453183 GCGCGCGCACCAAATACA 62.453 61.111 46.11 0.00 41.49 2.29
4518 4887 2.183046 GTGGAGAGAGTGCGGCTC 59.817 66.667 0.00 0.00 44.45 4.70
4519 4888 3.386237 GGTGGAGAGAGTGCGGCT 61.386 66.667 0.00 0.00 0.00 5.52
4520 4889 4.803426 CGGTGGAGAGAGTGCGGC 62.803 72.222 0.00 0.00 0.00 6.53
4521 4890 3.374402 ACGGTGGAGAGAGTGCGG 61.374 66.667 0.00 0.00 0.00 5.69
4522 4891 2.126307 CACGGTGGAGAGAGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
4524 4893 2.262915 GGCACGGTGGAGAGAGTG 59.737 66.667 10.60 0.00 37.63 3.51
4525 4894 2.203640 TGGCACGGTGGAGAGAGT 60.204 61.111 10.60 0.00 0.00 3.24
4526 4895 2.262915 GTGGCACGGTGGAGAGAG 59.737 66.667 10.60 0.00 0.00 3.20
4527 4896 3.311110 GGTGGCACGGTGGAGAGA 61.311 66.667 12.17 0.00 0.00 3.10
4528 4897 2.397413 AAAGGTGGCACGGTGGAGAG 62.397 60.000 12.17 0.00 0.00 3.20
4529 4898 2.448582 AAAGGTGGCACGGTGGAGA 61.449 57.895 12.17 0.00 0.00 3.71
4530 4899 2.113139 AAAGGTGGCACGGTGGAG 59.887 61.111 12.17 0.00 0.00 3.86
4531 4900 2.203280 CAAAGGTGGCACGGTGGA 60.203 61.111 12.17 0.00 0.00 4.02
4532 4901 3.977244 GCAAAGGTGGCACGGTGG 61.977 66.667 12.17 0.04 0.00 4.61
4540 4909 2.672996 CGTGAGGGGCAAAGGTGG 60.673 66.667 0.00 0.00 0.00 4.61
4541 4910 3.365265 GCGTGAGGGGCAAAGGTG 61.365 66.667 0.00 0.00 0.00 4.00
4574 4943 4.162690 AAAGCTCCCCGCGCTAGG 62.163 66.667 5.56 5.96 45.59 3.02
4575 4944 2.892425 CAAAGCTCCCCGCGCTAG 60.892 66.667 5.56 0.00 45.59 3.42
4576 4945 4.467084 CCAAAGCTCCCCGCGCTA 62.467 66.667 5.56 0.00 45.59 4.26
4625 4994 3.289834 CGCCCATGGTAGCATGCC 61.290 66.667 26.03 18.02 43.46 4.40
4626 4995 3.289834 CCGCCCATGGTAGCATGC 61.290 66.667 26.03 16.41 0.00 4.06
4627 4996 3.289834 GCCGCCCATGGTAGCATG 61.290 66.667 24.80 24.80 0.00 4.06
4628 4997 3.137385 ATGCCGCCCATGGTAGCAT 62.137 57.895 21.47 21.47 38.22 3.79
4629 4998 3.807839 ATGCCGCCCATGGTAGCA 61.808 61.111 19.29 19.29 37.29 3.49
4630 4999 3.289834 CATGCCGCCCATGGTAGC 61.290 66.667 11.73 10.83 46.09 3.58
4636 5005 4.820744 GACACCCATGCCGCCCAT 62.821 66.667 0.00 0.00 33.39 4.00
4638 5007 4.820744 ATGACACCCATGCCGCCC 62.821 66.667 0.00 0.00 33.39 6.13
4639 5008 3.520862 CATGACACCCATGCCGCC 61.521 66.667 0.00 0.00 45.25 6.13
4645 5014 1.803453 AAGCCACCCATGACACCCAT 61.803 55.000 0.00 0.00 35.44 4.00
4646 5015 2.017668 AAAGCCACCCATGACACCCA 62.018 55.000 0.00 0.00 0.00 4.51
4647 5016 1.228862 AAAGCCACCCATGACACCC 60.229 57.895 0.00 0.00 0.00 4.61
4648 5017 1.535204 CCAAAGCCACCCATGACACC 61.535 60.000 0.00 0.00 0.00 4.16
4649 5018 0.539438 TCCAAAGCCACCCATGACAC 60.539 55.000 0.00 0.00 0.00 3.67
4650 5019 0.251297 CTCCAAAGCCACCCATGACA 60.251 55.000 0.00 0.00 0.00 3.58
4651 5020 1.598701 GCTCCAAAGCCACCCATGAC 61.599 60.000 0.00 0.00 43.10 3.06
4652 5021 1.304381 GCTCCAAAGCCACCCATGA 60.304 57.895 0.00 0.00 43.10 3.07
4653 5022 3.291611 GCTCCAAAGCCACCCATG 58.708 61.111 0.00 0.00 43.10 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.