Multiple sequence alignment - TraesCS5B01G395000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G395000 chr5B 100.000 8969 0 0 538 9506 572517148 572526116 0.000000e+00 16563.0
1 TraesCS5B01G395000 chr5B 99.048 315 3 0 9192 9506 687225630 687225944 4.980000e-157 566.0
2 TraesCS5B01G395000 chr5B 100.000 183 0 0 1 183 572516611 572516793 1.180000e-88 339.0
3 TraesCS5B01G395000 chr5B 87.402 127 4 4 7252 7366 572523790 572523916 1.670000e-27 135.0
4 TraesCS5B01G395000 chr5B 87.402 127 4 4 7180 7306 572523862 572523976 1.670000e-27 135.0
5 TraesCS5B01G395000 chr5D 95.161 3389 95 37 3166 6506 465189113 465192480 0.000000e+00 5286.0
6 TraesCS5B01G395000 chr5D 95.739 2300 85 3 6350 8637 465192970 465195268 0.000000e+00 3692.0
7 TraesCS5B01G395000 chr5D 93.753 2241 79 20 937 3171 465186885 465189070 0.000000e+00 3306.0
8 TraesCS5B01G395000 chr5D 97.354 567 14 1 8629 9195 44062820 44062255 0.000000e+00 963.0
9 TraesCS5B01G395000 chr5D 97.500 560 14 0 8636 9195 457555866 457556425 0.000000e+00 957.0
10 TraesCS5B01G395000 chr5D 88.592 412 20 4 544 943 465186262 465186658 8.640000e-130 475.0
11 TraesCS5B01G395000 chr5D 93.631 157 7 3 6350 6506 465192465 465192618 2.060000e-56 231.0
12 TraesCS5B01G395000 chr5D 88.189 127 3 4 7180 7306 465193873 465193987 3.580000e-29 141.0
13 TraesCS5B01G395000 chr5D 87.402 127 4 4 7252 7366 465193801 465193927 1.670000e-27 135.0
14 TraesCS5B01G395000 chr5D 93.750 48 3 0 74 121 330544043 330544090 1.320000e-08 73.1
15 TraesCS5B01G395000 chr5A 95.267 2620 72 17 3168 5755 585456816 585459415 0.000000e+00 4104.0
16 TraesCS5B01G395000 chr5A 95.216 2341 100 3 6308 8637 585460036 585462375 0.000000e+00 3692.0
17 TraesCS5B01G395000 chr5A 91.371 2619 107 45 591 3168 585454228 585456768 0.000000e+00 3474.0
18 TraesCS5B01G395000 chr5A 93.923 543 23 7 5676 6213 585459405 585459942 0.000000e+00 811.0
19 TraesCS5B01G395000 chr5A 85.855 304 38 2 1800 2103 31404636 31404338 1.540000e-82 318.0
20 TraesCS5B01G395000 chr5A 86.614 127 5 4 7252 7366 585460907 585461033 7.750000e-26 130.0
21 TraesCS5B01G395000 chr5A 85.246 122 6 4 7180 7301 585460979 585461088 2.170000e-21 115.0
22 TraesCS5B01G395000 chr5A 97.872 47 0 1 6212 6258 585459978 585460023 7.910000e-11 80.5
23 TraesCS5B01G395000 chr1D 94.383 908 22 9 8628 9506 115025573 115026480 0.000000e+00 1367.0
24 TraesCS5B01G395000 chr1D 99.048 315 2 1 9192 9506 315635370 315635057 1.790000e-156 564.0
25 TraesCS5B01G395000 chr1D 99.048 315 2 1 9192 9506 433926622 433926935 1.790000e-156 564.0
26 TraesCS5B01G395000 chr1D 77.358 742 110 25 6525 7249 470550498 470549798 4.160000e-103 387.0
27 TraesCS5B01G395000 chr6B 92.149 777 50 6 8631 9406 701050893 701050127 0.000000e+00 1086.0
28 TraesCS5B01G395000 chr6B 96.694 121 4 0 4 124 496605344 496605224 1.620000e-47 202.0
29 TraesCS5B01G395000 chr6B 96.610 118 4 0 4 121 66866551 66866434 7.530000e-46 196.0
30 TraesCS5B01G395000 chr6B 95.868 121 5 0 4 124 66904790 66904670 7.530000e-46 196.0
31 TraesCS5B01G395000 chr6B 95.868 121 5 0 4 124 66927378 66927258 7.530000e-46 196.0
32 TraesCS5B01G395000 chr6B 95.041 121 6 0 1 121 300870413 300870533 3.500000e-44 191.0
33 TraesCS5B01G395000 chr6D 97.509 562 14 0 8634 9195 34543555 34542994 0.000000e+00 961.0
34 TraesCS5B01G395000 chr6D 99.048 315 2 1 9192 9506 11244046 11243733 1.790000e-156 564.0
35 TraesCS5B01G395000 chr6D 91.597 119 10 0 4 122 458051854 458051736 2.120000e-36 165.0
36 TraesCS5B01G395000 chr2B 97.504 561 14 0 8635 9195 68360256 68360816 0.000000e+00 959.0
37 TraesCS5B01G395000 chr2B 84.055 508 71 9 1775 2279 147497227 147497727 1.860000e-131 481.0
38 TraesCS5B01G395000 chr1A 97.504 561 14 0 8635 9195 127109639 127110199 0.000000e+00 959.0
39 TraesCS5B01G395000 chr3D 97.500 560 14 0 8636 9195 437756617 437757176 0.000000e+00 957.0
40 TraesCS5B01G395000 chr3D 97.500 560 14 0 8636 9195 515545054 515544495 0.000000e+00 957.0
41 TraesCS5B01G395000 chr3D 99.363 314 2 0 9193 9506 437757351 437757664 3.850000e-158 569.0
42 TraesCS5B01G395000 chr3D 88.519 270 28 3 1800 2068 569314066 569313799 3.310000e-84 324.0
43 TraesCS5B01G395000 chr3D 86.184 304 37 2 1800 2103 603690332 603690034 3.310000e-84 324.0
44 TraesCS5B01G395000 chr3D 95.413 109 5 0 13 121 143059290 143059182 3.530000e-39 174.0
45 TraesCS5B01G395000 chr4B 99.363 314 2 0 9193 9506 24924226 24923913 3.850000e-158 569.0
46 TraesCS5B01G395000 chr4B 95.763 118 4 1 4 121 427071170 427071054 1.260000e-43 189.0
47 TraesCS5B01G395000 chrUn 99.045 314 3 0 9193 9506 27556629 27556942 1.790000e-156 564.0
48 TraesCS5B01G395000 chrUn 94.545 55 2 1 7314 7367 995174 995228 6.120000e-12 84.2
49 TraesCS5B01G395000 chrUn 94.340 53 2 1 7255 7306 995175 995227 7.910000e-11 80.5
50 TraesCS5B01G395000 chr7D 99.048 315 2 1 9192 9506 491277578 491277891 1.790000e-156 564.0
51 TraesCS5B01G395000 chr7D 84.470 264 26 5 1713 1976 621222301 621222053 7.370000e-61 246.0
52 TraesCS5B01G395000 chr7D 95.935 123 5 0 1 123 29777534 29777656 5.820000e-47 200.0
53 TraesCS5B01G395000 chr7D 82.308 130 21 2 1 130 571829062 571828935 2.810000e-20 111.0
54 TraesCS5B01G395000 chr3B 86.111 324 40 2 1780 2103 809839507 809839189 2.540000e-90 344.0
55 TraesCS5B01G395000 chr3B 86.184 304 37 2 1800 2103 810171733 810172031 3.310000e-84 324.0
56 TraesCS5B01G395000 chr3A 86.184 304 37 2 1800 2103 732393724 732394022 3.310000e-84 324.0
57 TraesCS5B01G395000 chr3A 94.958 119 6 0 4 122 732227030 732226912 4.530000e-43 187.0
58 TraesCS5B01G395000 chr1B 88.953 172 15 2 1713 1880 604656352 604656181 9.670000e-50 209.0
59 TraesCS5B01G395000 chr4A 97.500 120 3 0 4 123 706854602 706854483 1.250000e-48 206.0
60 TraesCS5B01G395000 chr4A 93.496 123 8 0 1 123 572883881 572884003 5.860000e-42 183.0
61 TraesCS5B01G395000 chr4A 94.215 121 6 1 1 121 729691620 729691739 5.860000e-42 183.0
62 TraesCS5B01G395000 chr2A 95.868 121 5 0 1 121 748960097 748960217 7.530000e-46 196.0
63 TraesCS5B01G395000 chr2D 94.215 121 7 0 1 121 448150664 448150784 1.630000e-42 185.0
64 TraesCS5B01G395000 chr2D 96.330 109 4 0 13 121 13402858 13402750 7.580000e-41 180.0
65 TraesCS5B01G395000 chr7B 90.909 132 11 1 4 134 523162979 523163110 9.810000e-40 176.0
66 TraesCS5B01G395000 chr6A 95.745 47 2 0 75 121 36702654 36702700 1.020000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G395000 chr5B 572516611 572526116 9505 False 4293.000000 16563 93.701000 1 9506 4 chr5B.!!$F2 9505
1 TraesCS5B01G395000 chr5D 465186262 465195268 9006 False 1895.142857 5286 91.781000 544 8637 7 chr5D.!!$F3 8093
2 TraesCS5B01G395000 chr5D 44062255 44062820 565 True 963.000000 963 97.354000 8629 9195 1 chr5D.!!$R1 566
3 TraesCS5B01G395000 chr5D 457555866 457556425 559 False 957.000000 957 97.500000 8636 9195 1 chr5D.!!$F2 559
4 TraesCS5B01G395000 chr5A 585454228 585462375 8147 False 1772.357143 4104 92.215571 591 8637 7 chr5A.!!$F1 8046
5 TraesCS5B01G395000 chr1D 115025573 115026480 907 False 1367.000000 1367 94.383000 8628 9506 1 chr1D.!!$F1 878
6 TraesCS5B01G395000 chr1D 470549798 470550498 700 True 387.000000 387 77.358000 6525 7249 1 chr1D.!!$R2 724
7 TraesCS5B01G395000 chr6B 701050127 701050893 766 True 1086.000000 1086 92.149000 8631 9406 1 chr6B.!!$R5 775
8 TraesCS5B01G395000 chr6D 34542994 34543555 561 True 961.000000 961 97.509000 8634 9195 1 chr6D.!!$R2 561
9 TraesCS5B01G395000 chr2B 68360256 68360816 560 False 959.000000 959 97.504000 8635 9195 1 chr2B.!!$F1 560
10 TraesCS5B01G395000 chr2B 147497227 147497727 500 False 481.000000 481 84.055000 1775 2279 1 chr2B.!!$F2 504
11 TraesCS5B01G395000 chr1A 127109639 127110199 560 False 959.000000 959 97.504000 8635 9195 1 chr1A.!!$F1 560
12 TraesCS5B01G395000 chr3D 515544495 515545054 559 True 957.000000 957 97.500000 8636 9195 1 chr3D.!!$R2 559
13 TraesCS5B01G395000 chr3D 437756617 437757664 1047 False 763.000000 957 98.431500 8636 9506 2 chr3D.!!$F1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.033208 ACATGTATGGGTTGGCCTGG 60.033 55.000 3.32 0.00 34.45 4.45 F
92 93 0.041090 ATGGGTTGGCCTGGGTTTAG 59.959 55.000 3.32 0.00 34.45 1.85 F
158 159 0.101040 CAATGGGTGGCATTGTAGCG 59.899 55.000 0.00 0.00 35.84 4.26 F
1475 1749 0.820074 TTGTTTCCCGGCATCGTGTT 60.820 50.000 0.00 0.00 33.95 3.32 F
1548 1822 0.108424 CTGGTGCTGTGTAGGAGAGC 60.108 60.000 0.00 0.00 41.50 4.09 F
2295 2579 1.409427 CTTATCGAGGTCAGTGTCCCC 59.591 57.143 2.50 0.00 0.00 4.81 F
2764 3071 2.470990 TCTCTAGGGATTGCAGCAAGA 58.529 47.619 14.47 2.97 0.00 3.02 F
4203 4589 0.251653 TTGTCTGCGAGTCCCCTAGT 60.252 55.000 0.00 0.00 0.00 2.57 F
4428 4814 0.035439 CCGCTTTTAGGAGGGAGCAA 60.035 55.000 0.00 0.00 34.90 3.91 F
5863 6325 1.156566 TAAAACCCTTGGTGCCCCC 59.843 57.895 0.00 0.00 35.34 5.40 F
6315 6821 1.203038 ACATCTGGGTTTGTGATGGCA 60.203 47.619 0.00 0.00 41.12 4.92 F
7887 9057 0.038159 ACCGTTCTTTCGAGGCTCAG 60.038 55.000 15.95 7.64 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 1499 0.165944 CAGGTGTTCGACGAAATGCC 59.834 55.000 12.67 13.92 0.00 4.40 R
1311 1585 0.317799 ATATCTCGCTGCTGCTGAGG 59.682 55.000 25.06 8.98 38.96 3.86 R
1531 1805 1.219393 GGCTCTCCTACACAGCACC 59.781 63.158 0.00 0.00 34.62 5.01 R
2295 2579 1.210155 GGCCTGCTACGCTGTTTTG 59.790 57.895 0.00 0.00 0.00 2.44 R
2705 3012 5.574830 GTGTAACATGCCATGCGAAAATAAA 59.425 36.000 4.17 0.00 36.32 1.40 R
4203 4589 3.101437 AGCTTGATCCCATTTGAATGCA 58.899 40.909 0.00 0.00 35.08 3.96 R
4428 4814 5.163416 TGCCTTTAGCTTTGCTTCTTTTTCT 60.163 36.000 0.00 0.00 44.23 2.52 R
6034 6500 2.224769 CCCACCAACTTTCTAGGCTTCA 60.225 50.000 0.00 0.00 0.00 3.02 R
6315 6821 3.136626 GGGGTTGATCTACACCTATGCTT 59.863 47.826 19.90 0.00 38.62 3.91 R
7599 8769 0.315251 CTGACAGTGCGGACTTGAGA 59.685 55.000 6.93 0.00 0.00 3.27 R
7899 9069 0.036306 TGGCGAAGAGAACCCTTTCC 59.964 55.000 0.00 0.00 31.28 3.13 R
8856 10037 1.079612 CACCGTCAGCAGCAGATCA 60.080 57.895 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.659440 TTTGGATTGGTTTGGATTCTAGC 57.341 39.130 0.00 0.00 0.00 3.42
26 27 4.314522 TGGATTGGTTTGGATTCTAGCA 57.685 40.909 0.00 0.00 0.00 3.49
27 28 4.870636 TGGATTGGTTTGGATTCTAGCAT 58.129 39.130 0.00 0.00 0.00 3.79
28 29 5.271598 TGGATTGGTTTGGATTCTAGCATT 58.728 37.500 0.00 0.00 0.00 3.56
29 30 5.721000 TGGATTGGTTTGGATTCTAGCATTT 59.279 36.000 0.00 0.00 0.00 2.32
30 31 6.044682 GGATTGGTTTGGATTCTAGCATTTG 58.955 40.000 0.00 0.00 0.00 2.32
31 32 4.454728 TGGTTTGGATTCTAGCATTTGC 57.545 40.909 0.00 0.00 42.49 3.68
32 33 3.831333 TGGTTTGGATTCTAGCATTTGCA 59.169 39.130 5.20 0.00 45.16 4.08
33 34 4.282957 TGGTTTGGATTCTAGCATTTGCAA 59.717 37.500 5.20 0.00 45.16 4.08
34 35 5.046448 TGGTTTGGATTCTAGCATTTGCAAT 60.046 36.000 0.00 0.00 45.16 3.56
35 36 5.876460 GGTTTGGATTCTAGCATTTGCAATT 59.124 36.000 0.00 0.00 45.16 2.32
36 37 6.372381 GGTTTGGATTCTAGCATTTGCAATTT 59.628 34.615 0.00 0.00 45.16 1.82
37 38 6.971527 TTGGATTCTAGCATTTGCAATTTG 57.028 33.333 0.00 2.50 45.16 2.32
38 39 5.421277 TGGATTCTAGCATTTGCAATTTGG 58.579 37.500 0.00 0.00 45.16 3.28
39 40 5.046448 TGGATTCTAGCATTTGCAATTTGGT 60.046 36.000 15.95 15.95 45.16 3.67
40 41 5.521372 GGATTCTAGCATTTGCAATTTGGTC 59.479 40.000 15.34 4.35 45.16 4.02
41 42 5.726980 TTCTAGCATTTGCAATTTGGTCT 57.273 34.783 15.34 6.58 45.16 3.85
42 43 5.063180 TCTAGCATTTGCAATTTGGTCTG 57.937 39.130 15.34 11.08 45.16 3.51
43 44 3.048337 AGCATTTGCAATTTGGTCTGG 57.952 42.857 0.00 0.00 45.16 3.86
44 45 2.369532 AGCATTTGCAATTTGGTCTGGT 59.630 40.909 0.00 0.00 45.16 4.00
45 46 3.140623 GCATTTGCAATTTGGTCTGGTT 58.859 40.909 0.00 0.00 41.59 3.67
46 47 3.565063 GCATTTGCAATTTGGTCTGGTTT 59.435 39.130 0.00 0.00 41.59 3.27
47 48 4.555116 GCATTTGCAATTTGGTCTGGTTTG 60.555 41.667 0.00 0.00 41.59 2.93
48 49 2.906691 TGCAATTTGGTCTGGTTTGG 57.093 45.000 0.00 0.00 0.00 3.28
49 50 2.114616 TGCAATTTGGTCTGGTTTGGT 58.885 42.857 0.00 0.00 0.00 3.67
50 51 2.503356 TGCAATTTGGTCTGGTTTGGTT 59.497 40.909 0.00 0.00 0.00 3.67
51 52 3.054802 TGCAATTTGGTCTGGTTTGGTTT 60.055 39.130 0.00 0.00 0.00 3.27
52 53 3.312146 GCAATTTGGTCTGGTTTGGTTTG 59.688 43.478 0.00 0.00 0.00 2.93
53 54 4.764172 CAATTTGGTCTGGTTTGGTTTGA 58.236 39.130 0.00 0.00 0.00 2.69
54 55 5.367302 CAATTTGGTCTGGTTTGGTTTGAT 58.633 37.500 0.00 0.00 0.00 2.57
55 56 4.664150 TTTGGTCTGGTTTGGTTTGATC 57.336 40.909 0.00 0.00 0.00 2.92
56 57 2.226330 TGGTCTGGTTTGGTTTGATCG 58.774 47.619 0.00 0.00 0.00 3.69
57 58 1.068541 GGTCTGGTTTGGTTTGATCGC 60.069 52.381 0.00 0.00 0.00 4.58
58 59 1.880027 GTCTGGTTTGGTTTGATCGCT 59.120 47.619 0.00 0.00 0.00 4.93
59 60 1.879380 TCTGGTTTGGTTTGATCGCTG 59.121 47.619 0.00 0.00 0.00 5.18
60 61 0.958091 TGGTTTGGTTTGATCGCTGG 59.042 50.000 0.00 0.00 0.00 4.85
61 62 1.243902 GGTTTGGTTTGATCGCTGGA 58.756 50.000 0.00 0.00 0.00 3.86
62 63 1.068541 GGTTTGGTTTGATCGCTGGAC 60.069 52.381 0.00 0.00 0.00 4.02
63 64 1.880027 GTTTGGTTTGATCGCTGGACT 59.120 47.619 0.00 0.00 0.00 3.85
64 65 2.270352 TTGGTTTGATCGCTGGACTT 57.730 45.000 0.00 0.00 0.00 3.01
65 66 3.410631 TTGGTTTGATCGCTGGACTTA 57.589 42.857 0.00 0.00 0.00 2.24
66 67 3.627395 TGGTTTGATCGCTGGACTTAT 57.373 42.857 0.00 0.00 0.00 1.73
67 68 4.746535 TGGTTTGATCGCTGGACTTATA 57.253 40.909 0.00 0.00 0.00 0.98
68 69 4.439057 TGGTTTGATCGCTGGACTTATAC 58.561 43.478 0.00 0.00 0.00 1.47
69 70 4.081365 TGGTTTGATCGCTGGACTTATACA 60.081 41.667 0.00 0.00 0.00 2.29
70 71 5.057149 GGTTTGATCGCTGGACTTATACAT 58.943 41.667 0.00 0.00 0.00 2.29
71 72 5.050091 GGTTTGATCGCTGGACTTATACATG 60.050 44.000 0.00 0.00 0.00 3.21
72 73 4.937201 TGATCGCTGGACTTATACATGT 57.063 40.909 2.69 2.69 0.00 3.21
73 74 6.399639 TTGATCGCTGGACTTATACATGTA 57.600 37.500 8.27 8.27 0.00 2.29
74 75 6.590234 TGATCGCTGGACTTATACATGTAT 57.410 37.500 21.57 21.57 0.00 2.29
75 76 6.389906 TGATCGCTGGACTTATACATGTATG 58.610 40.000 25.48 13.83 0.00 2.39
76 77 5.134202 TCGCTGGACTTATACATGTATGG 57.866 43.478 25.48 19.47 0.00 2.74
77 78 4.021456 TCGCTGGACTTATACATGTATGGG 60.021 45.833 25.48 19.17 0.00 4.00
78 79 4.262463 CGCTGGACTTATACATGTATGGGT 60.262 45.833 25.48 21.70 0.00 4.51
79 80 5.621193 GCTGGACTTATACATGTATGGGTT 58.379 41.667 25.48 9.20 0.00 4.11
80 81 5.470098 GCTGGACTTATACATGTATGGGTTG 59.530 44.000 25.48 16.81 0.00 3.77
81 82 5.935945 TGGACTTATACATGTATGGGTTGG 58.064 41.667 25.48 12.21 0.00 3.77
82 83 4.760204 GGACTTATACATGTATGGGTTGGC 59.240 45.833 25.48 13.41 0.00 4.52
83 84 4.725490 ACTTATACATGTATGGGTTGGCC 58.275 43.478 25.48 0.00 0.00 5.36
84 85 4.415512 ACTTATACATGTATGGGTTGGCCT 59.584 41.667 25.48 1.41 34.45 5.19
85 86 2.727123 TACATGTATGGGTTGGCCTG 57.273 50.000 3.32 0.00 34.45 4.85
86 87 0.033208 ACATGTATGGGTTGGCCTGG 60.033 55.000 3.32 0.00 34.45 4.45
87 88 0.756442 CATGTATGGGTTGGCCTGGG 60.756 60.000 3.32 0.00 34.45 4.45
88 89 1.221213 ATGTATGGGTTGGCCTGGGT 61.221 55.000 3.32 0.00 34.45 4.51
89 90 1.386550 GTATGGGTTGGCCTGGGTT 59.613 57.895 3.32 0.00 34.45 4.11
90 91 0.252057 GTATGGGTTGGCCTGGGTTT 60.252 55.000 3.32 0.00 34.45 3.27
91 92 1.006162 GTATGGGTTGGCCTGGGTTTA 59.994 52.381 3.32 0.00 34.45 2.01
92 93 0.041090 ATGGGTTGGCCTGGGTTTAG 59.959 55.000 3.32 0.00 34.45 1.85
93 94 1.365105 TGGGTTGGCCTGGGTTTAGT 61.365 55.000 3.32 0.00 34.45 2.24
94 95 0.178944 GGGTTGGCCTGGGTTTAGTT 60.179 55.000 3.32 0.00 34.45 2.24
95 96 1.712056 GGTTGGCCTGGGTTTAGTTT 58.288 50.000 3.32 0.00 0.00 2.66
96 97 1.343142 GGTTGGCCTGGGTTTAGTTTG 59.657 52.381 3.32 0.00 0.00 2.93
97 98 1.343142 GTTGGCCTGGGTTTAGTTTGG 59.657 52.381 3.32 0.00 0.00 3.28
98 99 0.854218 TGGCCTGGGTTTAGTTTGGA 59.146 50.000 3.32 0.00 0.00 3.53
99 100 1.431243 TGGCCTGGGTTTAGTTTGGAT 59.569 47.619 3.32 0.00 0.00 3.41
100 101 2.158234 TGGCCTGGGTTTAGTTTGGATT 60.158 45.455 3.32 0.00 0.00 3.01
101 102 3.076182 TGGCCTGGGTTTAGTTTGGATTA 59.924 43.478 3.32 0.00 0.00 1.75
102 103 3.446161 GGCCTGGGTTTAGTTTGGATTAC 59.554 47.826 0.00 0.00 0.00 1.89
103 104 4.083565 GCCTGGGTTTAGTTTGGATTACA 58.916 43.478 0.00 0.00 0.00 2.41
104 105 4.525100 GCCTGGGTTTAGTTTGGATTACAA 59.475 41.667 0.00 0.00 37.28 2.41
105 106 5.011227 GCCTGGGTTTAGTTTGGATTACAAA 59.989 40.000 0.00 0.00 46.34 2.83
117 118 5.789574 TGGATTACAAACTATTCCCAGGT 57.210 39.130 0.00 0.00 0.00 4.00
118 119 6.147437 TGGATTACAAACTATTCCCAGGTT 57.853 37.500 0.00 0.00 0.00 3.50
119 120 6.557568 TGGATTACAAACTATTCCCAGGTTT 58.442 36.000 0.00 0.00 34.10 3.27
120 121 7.700846 TGGATTACAAACTATTCCCAGGTTTA 58.299 34.615 0.00 0.00 32.80 2.01
121 122 7.832187 TGGATTACAAACTATTCCCAGGTTTAG 59.168 37.037 0.00 0.00 32.80 1.85
122 123 7.284716 GGATTACAAACTATTCCCAGGTTTAGG 59.715 40.741 0.00 0.00 32.80 2.69
123 124 4.341487 ACAAACTATTCCCAGGTTTAGGC 58.659 43.478 0.00 0.00 32.80 3.93
124 125 4.044191 ACAAACTATTCCCAGGTTTAGGCT 59.956 41.667 0.00 0.00 32.80 4.58
125 126 4.505324 AACTATTCCCAGGTTTAGGCTC 57.495 45.455 0.00 0.00 0.00 4.70
126 127 3.460825 ACTATTCCCAGGTTTAGGCTCA 58.539 45.455 0.00 0.00 0.00 4.26
127 128 2.808906 ATTCCCAGGTTTAGGCTCAC 57.191 50.000 0.00 0.00 0.00 3.51
128 129 0.323629 TTCCCAGGTTTAGGCTCACG 59.676 55.000 0.00 0.00 0.00 4.35
129 130 0.543410 TCCCAGGTTTAGGCTCACGA 60.543 55.000 0.00 0.00 0.00 4.35
130 131 0.391263 CCCAGGTTTAGGCTCACGAC 60.391 60.000 0.00 0.00 0.00 4.34
131 132 0.320374 CCAGGTTTAGGCTCACGACA 59.680 55.000 0.00 0.00 0.00 4.35
132 133 1.066143 CCAGGTTTAGGCTCACGACAT 60.066 52.381 0.00 0.00 0.00 3.06
133 134 2.271800 CAGGTTTAGGCTCACGACATC 58.728 52.381 0.00 0.00 0.00 3.06
134 135 1.135083 AGGTTTAGGCTCACGACATCG 60.135 52.381 0.00 0.00 46.33 3.84
135 136 1.135199 GGTTTAGGCTCACGACATCGA 60.135 52.381 8.54 0.00 43.02 3.59
136 137 2.481449 GGTTTAGGCTCACGACATCGAT 60.481 50.000 8.54 0.00 43.02 3.59
137 138 3.243301 GGTTTAGGCTCACGACATCGATA 60.243 47.826 8.54 0.00 43.02 2.92
138 139 4.357142 GTTTAGGCTCACGACATCGATAA 58.643 43.478 8.54 0.00 43.02 1.75
139 140 2.493713 AGGCTCACGACATCGATAAC 57.506 50.000 8.54 0.00 43.02 1.89
140 141 1.749063 AGGCTCACGACATCGATAACA 59.251 47.619 8.54 0.00 43.02 2.41
141 142 2.165641 AGGCTCACGACATCGATAACAA 59.834 45.455 8.54 0.00 43.02 2.83
142 143 3.123804 GGCTCACGACATCGATAACAAT 58.876 45.455 8.54 0.00 43.02 2.71
143 144 3.060272 GGCTCACGACATCGATAACAATG 60.060 47.826 8.54 0.00 43.02 2.82
144 145 3.060272 GCTCACGACATCGATAACAATGG 60.060 47.826 8.54 0.00 43.02 3.16
145 146 3.453424 TCACGACATCGATAACAATGGG 58.547 45.455 8.54 0.00 43.02 4.00
146 147 3.118920 TCACGACATCGATAACAATGGGT 60.119 43.478 8.54 0.00 43.02 4.51
147 148 3.001228 CACGACATCGATAACAATGGGTG 59.999 47.826 8.54 0.00 43.02 4.61
148 149 2.543848 CGACATCGATAACAATGGGTGG 59.456 50.000 0.00 0.00 43.02 4.61
149 150 2.290641 GACATCGATAACAATGGGTGGC 59.709 50.000 0.00 0.00 0.00 5.01
150 151 2.296792 CATCGATAACAATGGGTGGCA 58.703 47.619 0.00 0.00 0.00 4.92
151 152 2.727123 TCGATAACAATGGGTGGCAT 57.273 45.000 0.00 0.00 0.00 4.40
152 153 3.011566 TCGATAACAATGGGTGGCATT 57.988 42.857 0.00 0.00 0.00 3.56
153 154 2.687425 TCGATAACAATGGGTGGCATTG 59.313 45.455 0.00 0.00 43.51 2.82
158 159 0.101040 CAATGGGTGGCATTGTAGCG 59.899 55.000 0.00 0.00 35.84 4.26
159 160 1.037030 AATGGGTGGCATTGTAGCGG 61.037 55.000 0.00 0.00 34.64 5.52
160 161 3.518068 GGGTGGCATTGTAGCGGC 61.518 66.667 0.00 0.00 34.64 6.53
161 162 2.749839 GGTGGCATTGTAGCGGCA 60.750 61.111 1.45 0.00 34.64 5.69
162 163 2.339556 GGTGGCATTGTAGCGGCAA 61.340 57.895 1.45 0.00 39.64 4.52
163 164 1.137404 GTGGCATTGTAGCGGCAAG 59.863 57.895 1.45 0.00 39.64 4.01
173 174 3.405464 GCGGCAAGCGCATAACTA 58.595 55.556 11.47 0.00 41.24 2.24
174 175 1.941812 GCGGCAAGCGCATAACTAT 59.058 52.632 11.47 0.00 41.24 2.12
175 176 1.144969 GCGGCAAGCGCATAACTATA 58.855 50.000 11.47 0.00 41.24 1.31
176 177 1.732259 GCGGCAAGCGCATAACTATAT 59.268 47.619 11.47 0.00 41.24 0.86
177 178 2.474526 GCGGCAAGCGCATAACTATATG 60.475 50.000 11.47 0.00 41.24 1.78
178 179 2.993220 CGGCAAGCGCATAACTATATGA 59.007 45.455 11.47 0.00 41.25 2.15
179 180 3.618594 CGGCAAGCGCATAACTATATGAT 59.381 43.478 11.47 0.00 41.25 2.45
180 181 4.259970 CGGCAAGCGCATAACTATATGATC 60.260 45.833 11.47 0.00 41.25 2.92
181 182 4.872691 GGCAAGCGCATAACTATATGATCT 59.127 41.667 11.47 0.00 41.25 2.75
182 183 5.352569 GGCAAGCGCATAACTATATGATCTT 59.647 40.000 11.47 0.00 41.25 2.40
567 568 5.860941 TTAATCTTTTTCAAGTGGGTGCA 57.139 34.783 0.00 0.00 0.00 4.57
604 605 1.254284 ACCGGAGTTCTGGAGCTCAG 61.254 60.000 17.19 11.13 45.36 3.35
623 624 6.051717 GCTCAGAATTTGCAGTATTCCTCTA 58.948 40.000 15.88 3.79 33.45 2.43
624 625 6.202570 GCTCAGAATTTGCAGTATTCCTCTAG 59.797 42.308 15.88 11.03 33.45 2.43
625 626 7.187824 TCAGAATTTGCAGTATTCCTCTAGT 57.812 36.000 15.88 0.00 33.45 2.57
626 627 7.268586 TCAGAATTTGCAGTATTCCTCTAGTC 58.731 38.462 15.88 0.00 33.45 2.59
627 628 7.124901 TCAGAATTTGCAGTATTCCTCTAGTCT 59.875 37.037 15.88 0.00 33.45 3.24
679 686 5.912396 TGATTAACTGATGCGTGTGAAAAAC 59.088 36.000 0.00 0.00 0.00 2.43
723 730 2.288763 CCAGTGTTTGGCAATTGGTACC 60.289 50.000 4.43 4.43 40.87 3.34
725 732 1.001520 GTGTTTGGCAATTGGTACCCC 59.998 52.381 10.07 3.05 0.00 4.95
789 796 7.721399 CCCTCAGCAAATTACTTCTATTATGGT 59.279 37.037 0.00 0.00 0.00 3.55
790 797 9.778741 CCTCAGCAAATTACTTCTATTATGGTA 57.221 33.333 0.00 0.00 0.00 3.25
792 799 9.778741 TCAGCAAATTACTTCTATTATGGTAGG 57.221 33.333 0.00 0.00 0.00 3.18
793 800 9.561069 CAGCAAATTACTTCTATTATGGTAGGT 57.439 33.333 0.00 0.00 0.00 3.08
794 801 9.561069 AGCAAATTACTTCTATTATGGTAGGTG 57.439 33.333 0.00 0.00 0.00 4.00
795 802 9.338622 GCAAATTACTTCTATTATGGTAGGTGT 57.661 33.333 0.00 0.00 0.00 4.16
797 804 9.847224 AAATTACTTCTATTATGGTAGGTGTGG 57.153 33.333 0.00 0.00 0.00 4.17
798 805 5.291905 ACTTCTATTATGGTAGGTGTGGC 57.708 43.478 0.00 0.00 0.00 5.01
1096 1369 1.071699 AGGACAACAACGTGCAGGTAT 59.928 47.619 13.22 1.19 0.00 2.73
1097 1370 2.300723 AGGACAACAACGTGCAGGTATA 59.699 45.455 13.22 0.00 0.00 1.47
1105 1378 1.053048 CGTGCAGGTATAGCGATTCG 58.947 55.000 0.62 0.62 33.85 3.34
1116 1389 2.582498 CGATTCGTCTCGCCCACC 60.582 66.667 0.00 0.00 0.00 4.61
1117 1390 2.202892 GATTCGTCTCGCCCACCC 60.203 66.667 0.00 0.00 0.00 4.61
1118 1391 2.683933 ATTCGTCTCGCCCACCCT 60.684 61.111 0.00 0.00 0.00 4.34
1119 1392 2.630592 GATTCGTCTCGCCCACCCTC 62.631 65.000 0.00 0.00 0.00 4.30
1163 1436 3.049080 GCCTCTGCCTCCCCGATTT 62.049 63.158 0.00 0.00 0.00 2.17
1175 1448 2.125269 CGATTTTCCCCTCGCGGT 60.125 61.111 6.13 0.00 0.00 5.68
1176 1449 1.743995 CGATTTTCCCCTCGCGGTT 60.744 57.895 6.13 0.00 0.00 4.44
1178 1451 1.654023 GATTTTCCCCTCGCGGTTGG 61.654 60.000 6.13 6.50 0.00 3.77
1196 1469 2.022195 TGGGTCTCGATCTAGTTTCGG 58.978 52.381 14.71 8.20 37.22 4.30
1272 1546 4.424566 GTCCGGTCCGCGCTAACA 62.425 66.667 5.50 0.00 0.00 2.41
1280 1554 3.248171 CGCGCTAACAGCTCCGTC 61.248 66.667 5.56 0.00 39.60 4.79
1281 1555 2.886124 GCGCTAACAGCTCCGTCC 60.886 66.667 0.00 0.00 39.60 4.79
1282 1556 2.202756 CGCTAACAGCTCCGTCCC 60.203 66.667 0.00 0.00 39.60 4.46
1283 1557 2.202756 GCTAACAGCTCCGTCCCG 60.203 66.667 0.00 0.00 38.45 5.14
1311 1585 2.818274 GTGATTCGTGTCCGGCCC 60.818 66.667 0.00 0.00 33.95 5.80
1463 1737 3.195661 CGCAGGTATACTCCTTGTTTCC 58.804 50.000 2.25 0.00 35.37 3.13
1467 1741 2.558378 GTATACTCCTTGTTTCCCGGC 58.442 52.381 0.00 0.00 0.00 6.13
1468 1742 0.988832 ATACTCCTTGTTTCCCGGCA 59.011 50.000 0.00 0.00 0.00 5.69
1471 1745 1.369091 CTCCTTGTTTCCCGGCATCG 61.369 60.000 0.00 0.00 0.00 3.84
1472 1746 1.674322 CCTTGTTTCCCGGCATCGT 60.674 57.895 0.00 0.00 33.95 3.73
1473 1747 1.501741 CTTGTTTCCCGGCATCGTG 59.498 57.895 0.00 0.00 33.95 4.35
1474 1748 1.228003 TTGTTTCCCGGCATCGTGT 60.228 52.632 0.00 0.00 33.95 4.49
1475 1749 0.820074 TTGTTTCCCGGCATCGTGTT 60.820 50.000 0.00 0.00 33.95 3.32
1476 1750 1.231958 TGTTTCCCGGCATCGTGTTC 61.232 55.000 0.00 0.00 33.95 3.18
1477 1751 1.673009 TTTCCCGGCATCGTGTTCC 60.673 57.895 0.00 0.00 33.95 3.62
1478 1752 2.119484 TTTCCCGGCATCGTGTTCCT 62.119 55.000 0.00 0.00 33.95 3.36
1484 1758 0.949105 GGCATCGTGTTCCTGTTCGT 60.949 55.000 0.00 0.00 0.00 3.85
1499 1773 4.500887 CCTGTTCGTCTGTTCCTTCACTTA 60.501 45.833 0.00 0.00 0.00 2.24
1502 1776 6.053005 TGTTCGTCTGTTCCTTCACTTATTT 58.947 36.000 0.00 0.00 0.00 1.40
1503 1777 6.018262 TGTTCGTCTGTTCCTTCACTTATTTG 60.018 38.462 0.00 0.00 0.00 2.32
1504 1778 5.607477 TCGTCTGTTCCTTCACTTATTTGT 58.393 37.500 0.00 0.00 0.00 2.83
1505 1779 5.465390 TCGTCTGTTCCTTCACTTATTTGTG 59.535 40.000 0.00 0.00 39.15 3.33
1506 1780 5.452777 GTCTGTTCCTTCACTTATTTGTGC 58.547 41.667 0.00 0.00 37.81 4.57
1507 1781 5.008613 GTCTGTTCCTTCACTTATTTGTGCA 59.991 40.000 0.00 0.00 37.81 4.57
1508 1782 5.239306 TCTGTTCCTTCACTTATTTGTGCAG 59.761 40.000 0.00 0.00 37.81 4.41
1531 1805 1.814394 TGCCTAAATGCTCTTGTGCTG 59.186 47.619 0.00 0.00 0.00 4.41
1548 1822 0.108424 CTGGTGCTGTGTAGGAGAGC 60.108 60.000 0.00 0.00 41.50 4.09
1684 1964 7.535599 GTGCTTACTCTCTTTTATTTGCACTTC 59.464 37.037 0.00 0.00 42.26 3.01
1685 1965 7.228507 TGCTTACTCTCTTTTATTTGCACTTCA 59.771 33.333 0.00 0.00 0.00 3.02
1813 2093 1.546834 GTATGACGCCTCGAGTGTTC 58.453 55.000 12.31 4.65 40.03 3.18
1858 2138 5.068723 CCAGAAGGCAAGCTTTGATGATATT 59.931 40.000 0.00 0.00 0.00 1.28
1908 2188 3.931578 AGATGGTGTACTGTTTCTGAGC 58.068 45.455 0.00 0.00 0.00 4.26
1912 2192 5.483685 TGGTGTACTGTTTCTGAGCTAAT 57.516 39.130 0.00 0.00 0.00 1.73
1984 2264 3.002246 TCAGTTTTACTTGCAAGTGCTCG 59.998 43.478 36.50 21.15 40.07 5.03
2050 2330 3.414549 AACGCAACAAACTTACAGGTG 57.585 42.857 0.00 0.00 0.00 4.00
2295 2579 1.409427 CTTATCGAGGTCAGTGTCCCC 59.591 57.143 2.50 0.00 0.00 4.81
2332 2639 2.795329 CCTGATTTTGGCAGTACCTGT 58.205 47.619 0.00 0.00 40.22 4.00
2333 2640 2.489329 CCTGATTTTGGCAGTACCTGTG 59.511 50.000 0.00 0.00 40.22 3.66
2334 2641 3.149196 CTGATTTTGGCAGTACCTGTGT 58.851 45.455 0.00 0.00 40.22 3.72
2335 2642 3.146066 TGATTTTGGCAGTACCTGTGTC 58.854 45.455 0.00 0.00 40.22 3.67
2336 2643 2.719531 TTTTGGCAGTACCTGTGTCA 57.280 45.000 0.00 0.00 40.22 3.58
2337 2644 2.719531 TTTGGCAGTACCTGTGTCAA 57.280 45.000 0.00 0.00 40.22 3.18
2338 2645 2.949177 TTGGCAGTACCTGTGTCAAT 57.051 45.000 0.00 0.00 40.22 2.57
2339 2646 2.949177 TGGCAGTACCTGTGTCAATT 57.051 45.000 0.00 0.00 40.22 2.32
2340 2647 4.359434 TTGGCAGTACCTGTGTCAATTA 57.641 40.909 0.00 0.00 40.22 1.40
2341 2648 4.568072 TGGCAGTACCTGTGTCAATTAT 57.432 40.909 0.00 0.00 40.22 1.28
2342 2649 4.917385 TGGCAGTACCTGTGTCAATTATT 58.083 39.130 0.00 0.00 40.22 1.40
2343 2650 4.699735 TGGCAGTACCTGTGTCAATTATTG 59.300 41.667 0.00 0.00 40.22 1.90
2344 2651 4.438744 GGCAGTACCTGTGTCAATTATTGC 60.439 45.833 0.00 0.00 33.43 3.56
2345 2652 4.155826 GCAGTACCTGTGTCAATTATTGCA 59.844 41.667 0.00 0.00 33.43 4.08
2346 2653 5.674569 GCAGTACCTGTGTCAATTATTGCAG 60.675 44.000 0.00 2.52 33.43 4.41
2347 2654 5.643348 CAGTACCTGTGTCAATTATTGCAGA 59.357 40.000 10.98 6.04 0.00 4.26
2348 2655 6.149308 CAGTACCTGTGTCAATTATTGCAGAA 59.851 38.462 10.98 0.00 0.00 3.02
2349 2656 6.886459 AGTACCTGTGTCAATTATTGCAGAAT 59.114 34.615 10.98 0.00 0.00 2.40
2350 2657 5.957798 ACCTGTGTCAATTATTGCAGAATG 58.042 37.500 10.98 4.51 40.87 2.67
2351 2658 5.711506 ACCTGTGTCAATTATTGCAGAATGA 59.288 36.000 10.98 0.00 39.69 2.57
2352 2659 6.379133 ACCTGTGTCAATTATTGCAGAATGAT 59.621 34.615 10.98 0.00 39.69 2.45
2353 2660 7.093640 ACCTGTGTCAATTATTGCAGAATGATT 60.094 33.333 10.98 0.00 39.69 2.57
2764 3071 2.470990 TCTCTAGGGATTGCAGCAAGA 58.529 47.619 14.47 2.97 0.00 3.02
3018 3333 9.965902 CAGCATCTATTTATCCCTACCTTAATT 57.034 33.333 0.00 0.00 0.00 1.40
3391 3754 8.231692 TCAGTTTAATCATTTCACTGTTTCCA 57.768 30.769 8.00 0.00 36.91 3.53
3531 3894 4.530161 AGCTGAAGTGGTAGATTTCTCACT 59.470 41.667 0.00 0.00 41.59 3.41
3539 3902 8.553459 AGTGGTAGATTTCTCACTTTATGTTG 57.447 34.615 0.00 0.00 37.18 3.33
3557 3920 6.889301 ATGTTGTTGACATCTCTGATGTTT 57.111 33.333 13.46 0.00 45.88 2.83
3773 4140 6.734137 TGAGACGTTGAGCACATTAAAATTT 58.266 32.000 0.00 0.00 0.00 1.82
3988 4355 9.995003 TTGGTTTAATGAAAAATATTCTGTGCT 57.005 25.926 0.00 0.00 0.00 4.40
4171 4557 4.106029 CTGCAAGGACAATCTGGATTTG 57.894 45.455 0.00 0.00 0.00 2.32
4203 4589 0.251653 TTGTCTGCGAGTCCCCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
4259 4645 9.739276 ATTCAGTCCACTTATGTTTGATAAGAA 57.261 29.630 8.15 0.00 35.97 2.52
4344 4730 9.868277 TCTGTTTGTTGAACTTATGTTTTTGAT 57.132 25.926 0.00 0.00 39.08 2.57
4428 4814 0.035439 CCGCTTTTAGGAGGGAGCAA 60.035 55.000 0.00 0.00 34.90 3.91
4612 5000 1.750780 TTGTTGCACCACAGGCGAA 60.751 52.632 0.00 0.00 0.00 4.70
4832 5220 5.118729 TGGAAAACCTACAACTGAAGGAA 57.881 39.130 0.00 0.00 36.66 3.36
5038 5427 1.895131 ACTTTCATGACATGTTGGCCC 59.105 47.619 14.98 0.00 0.00 5.80
5064 5453 7.315890 GTGAAGGGGAAATTTTCAGTGATAAG 58.684 38.462 11.09 0.00 32.00 1.73
5207 5597 5.044846 AGGATCCTGTTAACAAGGTATGCTT 60.045 40.000 15.29 0.45 0.00 3.91
5230 5620 9.047371 GCTTTATAATTTGTAGACTTCTCTCCC 57.953 37.037 0.00 0.00 0.00 4.30
5239 5629 2.231721 AGACTTCTCTCCCGTTTAGTGC 59.768 50.000 0.00 0.00 0.00 4.40
5241 5631 2.028930 ACTTCTCTCCCGTTTAGTGCAG 60.029 50.000 0.00 0.00 0.00 4.41
5297 5687 4.766891 AGCTGTTACAAATACTTGCATGGT 59.233 37.500 4.44 1.45 35.84 3.55
5330 5720 9.528489 TCTCTTTACCTACCATTTTGCTTAAAT 57.472 29.630 0.00 0.00 36.90 1.40
5411 5801 7.141100 TGAGAAAAACGAGTTTCTTCTTGTT 57.859 32.000 15.74 0.00 45.67 2.83
5457 5847 6.974932 ATTTGGCATATCGTCTGATGATAC 57.025 37.500 19.06 9.51 35.99 2.24
5519 5914 9.424319 GTATACATTGTTGATCAACTCCGATAT 57.576 33.333 32.57 24.17 41.67 1.63
5733 6195 4.142204 TGTTATTGCATGCTATGGTTGTGG 60.142 41.667 22.51 0.00 0.00 4.17
5863 6325 1.156566 TAAAACCCTTGGTGCCCCC 59.843 57.895 0.00 0.00 35.34 5.40
5888 6350 5.008415 ACGAACGAGATTACAGGTGTATAGG 59.992 44.000 0.14 0.00 0.00 2.57
6007 6470 4.620982 CCATTTGGTTCTTGGTGTTCTTC 58.379 43.478 0.00 0.00 0.00 2.87
6008 6471 4.501400 CCATTTGGTTCTTGGTGTTCTTCC 60.501 45.833 0.00 0.00 0.00 3.46
6034 6500 6.321181 TGTTGTTGTTTTCTCTGCTTAGGAAT 59.679 34.615 0.00 0.00 0.00 3.01
6097 6564 2.196595 CCCTCAACCTGAATCTGGGTA 58.803 52.381 10.92 0.00 35.09 3.69
6252 6758 4.799564 TTGTGCAAGTTCAAGAAAAGGT 57.200 36.364 0.00 0.00 0.00 3.50
6315 6821 1.203038 ACATCTGGGTTTGTGATGGCA 60.203 47.619 0.00 0.00 41.12 4.92
6348 6854 4.927267 AGATCAACCCCAACAACTCATA 57.073 40.909 0.00 0.00 0.00 2.15
6482 7126 6.941857 TGATGGTTTTCACTGCATACTACTA 58.058 36.000 0.00 0.00 0.00 1.82
6833 7984 4.508662 GAGGATAACAAGAGACTGGTTGG 58.491 47.826 0.00 0.00 29.56 3.77
7065 8233 2.035321 GGATGACCCTTCGAGATCTGAC 59.965 54.545 0.00 0.00 0.00 3.51
7104 8272 2.158943 TCAGCTGGAAGAGATGCATGAG 60.159 50.000 15.13 0.00 38.04 2.90
7167 8337 7.961351 TGCAAGAAAGGGATGAATTTAAAAGA 58.039 30.769 0.00 0.00 0.00 2.52
7322 8492 7.391554 TGAAATGGATACTATGCTAAGCAATCC 59.608 37.037 0.00 0.00 40.56 3.01
7356 8526 3.871485 AGACATTCAGTTCAGAGATGCC 58.129 45.455 0.00 0.00 0.00 4.40
7392 8562 1.815003 GGTTTCCAAGGAGAGCATGTG 59.185 52.381 4.18 0.00 0.00 3.21
7410 8580 2.815503 TGTGCATGACTCTCCAATTGTG 59.184 45.455 4.43 0.00 0.00 3.33
7595 8765 3.933955 CAGAAAGAGCAGGAAGACATCAG 59.066 47.826 0.00 0.00 0.00 2.90
7599 8769 1.449246 GCAGGAAGACATCAGCGCT 60.449 57.895 2.64 2.64 0.00 5.92
7619 8789 0.315251 CTCAAGTCCGCACTGTCAGA 59.685 55.000 6.91 0.00 31.06 3.27
7649 8819 4.058817 GAGAGAGAAAACGCTTTGGAAGA 58.941 43.478 0.00 0.00 0.00 2.87
7704 8874 1.896220 TGCATCTGAAAACCGAAGCT 58.104 45.000 0.00 0.00 0.00 3.74
7722 8892 0.955919 CTCTTGCCGGGTCCAAGTTC 60.956 60.000 16.76 0.00 40.35 3.01
7781 8951 3.256879 CAGTTGAGTAGCCTGAGAACTCA 59.743 47.826 7.78 7.78 45.87 3.41
7797 8967 5.368989 AGAACTCACAAAACCGAGATTTCT 58.631 37.500 0.00 0.00 33.33 2.52
7875 9045 6.527423 TGGTCTTAAACAGAAATACCGTTCT 58.473 36.000 0.00 0.00 38.41 3.01
7887 9057 0.038159 ACCGTTCTTTCGAGGCTCAG 60.038 55.000 15.95 7.64 0.00 3.35
7899 9069 0.682855 AGGCTCAGAGGAAGGAGACG 60.683 60.000 0.00 0.00 44.09 4.18
7939 9109 1.541310 CGACAACCTGGACTGCCCTA 61.541 60.000 0.00 0.00 35.38 3.53
7944 9114 2.670148 CCTGGACTGCCCTACCACC 61.670 68.421 0.00 0.00 35.38 4.61
8010 9180 2.590645 TCCGAGGAGGAGAGGACG 59.409 66.667 0.00 0.00 45.98 4.79
8053 9223 4.819761 CCCGCGAGCAGCTTAGCA 62.820 66.667 19.66 0.00 45.59 3.49
8055 9225 2.593134 CCGCGAGCAGCTTAGCATC 61.593 63.158 19.66 0.38 45.59 3.91
8058 9228 1.424493 GCGAGCAGCTTAGCATCGTT 61.424 55.000 21.02 3.51 44.04 3.85
8061 9231 2.002586 GAGCAGCTTAGCATCGTTCAA 58.997 47.619 7.07 0.00 36.85 2.69
8151 9321 2.741055 GGGCTGCTTCCTCTCCCTC 61.741 68.421 0.00 0.00 34.19 4.30
8163 9333 2.683933 TCCCTCCTGGAAGCCGAC 60.684 66.667 0.00 0.00 41.40 4.79
8200 9370 2.033448 ATCACGCCTTGGCCGAAA 59.967 55.556 6.02 0.00 0.00 3.46
8202 9372 1.656818 ATCACGCCTTGGCCGAAATG 61.657 55.000 6.02 0.00 0.00 2.32
8259 9429 1.136984 CGACTACCAGGACAGCGTC 59.863 63.158 0.00 0.79 0.00 5.19
8294 9464 2.817056 GGGAGGAGCAGATCAGGGC 61.817 68.421 0.00 0.00 0.00 5.19
8498 9668 3.760673 GCTCTTGCTCGTCGACAG 58.239 61.111 17.16 12.82 36.03 3.51
8512 9682 3.370978 CGTCGACAGCCAATAAGATTTGT 59.629 43.478 17.16 0.00 0.00 2.83
8533 9713 2.165301 CGAACCGGTTCTCGCCATC 61.165 63.158 37.19 16.06 37.44 3.51
8614 9795 2.271800 GTTCTCTCGGGTGCTGTTATG 58.728 52.381 0.00 0.00 0.00 1.90
8856 10037 1.665679 GTTGATGACGATGTTGGCGAT 59.334 47.619 0.00 0.00 0.00 4.58
9028 10209 0.968393 GTTCCGGAGACCTGCTCTCT 60.968 60.000 3.34 0.00 44.63 3.10
9119 10300 3.181484 GCAAAACCCTAGGTGTTTTTCGT 60.181 43.478 25.98 12.22 42.38 3.85
9413 10771 4.522789 CCCATTAATTCTAACAATCCCCCG 59.477 45.833 0.00 0.00 0.00 5.73
9501 10859 5.858381 TCAGCAGAGACTGTTAAGTTGAAT 58.142 37.500 0.00 0.00 36.52 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.213195 TGCTAGAATCCAAACCAATCCAAATT 59.787 34.615 0.00 0.00 0.00 1.82
2 3 5.721000 TGCTAGAATCCAAACCAATCCAAAT 59.279 36.000 0.00 0.00 0.00 2.32
3 4 5.083122 TGCTAGAATCCAAACCAATCCAAA 58.917 37.500 0.00 0.00 0.00 3.28
4 5 4.671831 TGCTAGAATCCAAACCAATCCAA 58.328 39.130 0.00 0.00 0.00 3.53
6 7 5.859205 AATGCTAGAATCCAAACCAATCC 57.141 39.130 0.00 0.00 0.00 3.01
7 8 5.521372 GCAAATGCTAGAATCCAAACCAATC 59.479 40.000 0.00 0.00 38.21 2.67
8 9 5.046448 TGCAAATGCTAGAATCCAAACCAAT 60.046 36.000 6.97 0.00 42.66 3.16
9 10 4.282957 TGCAAATGCTAGAATCCAAACCAA 59.717 37.500 6.97 0.00 42.66 3.67
10 11 3.831333 TGCAAATGCTAGAATCCAAACCA 59.169 39.130 6.97 0.00 42.66 3.67
11 12 4.454728 TGCAAATGCTAGAATCCAAACC 57.545 40.909 6.97 0.00 42.66 3.27
12 13 6.973229 AATTGCAAATGCTAGAATCCAAAC 57.027 33.333 1.71 0.00 42.66 2.93
13 14 6.372103 CCAAATTGCAAATGCTAGAATCCAAA 59.628 34.615 1.71 0.00 42.66 3.28
14 15 5.875910 CCAAATTGCAAATGCTAGAATCCAA 59.124 36.000 1.71 0.00 42.66 3.53
15 16 5.046448 ACCAAATTGCAAATGCTAGAATCCA 60.046 36.000 1.71 0.00 42.66 3.41
16 17 5.422145 ACCAAATTGCAAATGCTAGAATCC 58.578 37.500 1.71 0.00 42.66 3.01
17 18 6.255020 CAGACCAAATTGCAAATGCTAGAATC 59.745 38.462 1.71 0.00 42.66 2.52
18 19 6.103997 CAGACCAAATTGCAAATGCTAGAAT 58.896 36.000 1.71 0.00 42.66 2.40
19 20 5.472148 CAGACCAAATTGCAAATGCTAGAA 58.528 37.500 1.71 0.00 42.66 2.10
20 21 4.082081 CCAGACCAAATTGCAAATGCTAGA 60.082 41.667 1.71 0.00 42.66 2.43
21 22 4.178540 CCAGACCAAATTGCAAATGCTAG 58.821 43.478 1.71 0.00 42.66 3.42
22 23 3.577848 ACCAGACCAAATTGCAAATGCTA 59.422 39.130 1.71 0.00 42.66 3.49
23 24 2.369532 ACCAGACCAAATTGCAAATGCT 59.630 40.909 1.71 0.00 42.66 3.79
24 25 2.769893 ACCAGACCAAATTGCAAATGC 58.230 42.857 1.71 0.00 42.50 3.56
25 26 4.023878 CCAAACCAGACCAAATTGCAAATG 60.024 41.667 1.71 5.89 0.00 2.32
26 27 4.136051 CCAAACCAGACCAAATTGCAAAT 58.864 39.130 1.71 0.00 0.00 2.32
27 28 3.054802 ACCAAACCAGACCAAATTGCAAA 60.055 39.130 1.71 0.00 0.00 3.68
28 29 2.503356 ACCAAACCAGACCAAATTGCAA 59.497 40.909 0.00 0.00 0.00 4.08
29 30 2.114616 ACCAAACCAGACCAAATTGCA 58.885 42.857 0.00 0.00 0.00 4.08
30 31 2.908688 ACCAAACCAGACCAAATTGC 57.091 45.000 0.00 0.00 0.00 3.56
31 32 4.764172 TCAAACCAAACCAGACCAAATTG 58.236 39.130 0.00 0.00 0.00 2.32
32 33 5.610398 GATCAAACCAAACCAGACCAAATT 58.390 37.500 0.00 0.00 0.00 1.82
33 34 4.261994 CGATCAAACCAAACCAGACCAAAT 60.262 41.667 0.00 0.00 0.00 2.32
34 35 3.067461 CGATCAAACCAAACCAGACCAAA 59.933 43.478 0.00 0.00 0.00 3.28
35 36 2.621055 CGATCAAACCAAACCAGACCAA 59.379 45.455 0.00 0.00 0.00 3.67
36 37 2.226330 CGATCAAACCAAACCAGACCA 58.774 47.619 0.00 0.00 0.00 4.02
37 38 1.068541 GCGATCAAACCAAACCAGACC 60.069 52.381 0.00 0.00 0.00 3.85
38 39 1.880027 AGCGATCAAACCAAACCAGAC 59.120 47.619 0.00 0.00 0.00 3.51
39 40 1.879380 CAGCGATCAAACCAAACCAGA 59.121 47.619 0.00 0.00 0.00 3.86
40 41 1.068333 CCAGCGATCAAACCAAACCAG 60.068 52.381 0.00 0.00 0.00 4.00
41 42 0.958091 CCAGCGATCAAACCAAACCA 59.042 50.000 0.00 0.00 0.00 3.67
42 43 1.068541 GTCCAGCGATCAAACCAAACC 60.069 52.381 0.00 0.00 0.00 3.27
43 44 1.880027 AGTCCAGCGATCAAACCAAAC 59.120 47.619 0.00 0.00 0.00 2.93
44 45 2.270352 AGTCCAGCGATCAAACCAAA 57.730 45.000 0.00 0.00 0.00 3.28
45 46 2.270352 AAGTCCAGCGATCAAACCAA 57.730 45.000 0.00 0.00 0.00 3.67
46 47 3.627395 ATAAGTCCAGCGATCAAACCA 57.373 42.857 0.00 0.00 0.00 3.67
47 48 4.439057 TGTATAAGTCCAGCGATCAAACC 58.561 43.478 0.00 0.00 0.00 3.27
48 49 5.523916 ACATGTATAAGTCCAGCGATCAAAC 59.476 40.000 0.00 0.00 0.00 2.93
49 50 5.670485 ACATGTATAAGTCCAGCGATCAAA 58.330 37.500 0.00 0.00 0.00 2.69
50 51 5.276461 ACATGTATAAGTCCAGCGATCAA 57.724 39.130 0.00 0.00 0.00 2.57
51 52 4.937201 ACATGTATAAGTCCAGCGATCA 57.063 40.909 0.00 0.00 0.00 2.92
52 53 5.807520 CCATACATGTATAAGTCCAGCGATC 59.192 44.000 17.86 0.00 0.00 3.69
53 54 5.337571 CCCATACATGTATAAGTCCAGCGAT 60.338 44.000 17.86 0.00 0.00 4.58
54 55 4.021456 CCCATACATGTATAAGTCCAGCGA 60.021 45.833 17.86 0.00 0.00 4.93
55 56 4.245660 CCCATACATGTATAAGTCCAGCG 58.754 47.826 17.86 2.93 0.00 5.18
56 57 5.228945 ACCCATACATGTATAAGTCCAGC 57.771 43.478 17.86 0.00 0.00 4.85
57 58 5.997746 CCAACCCATACATGTATAAGTCCAG 59.002 44.000 17.86 10.99 0.00 3.86
58 59 5.689031 GCCAACCCATACATGTATAAGTCCA 60.689 44.000 17.86 0.00 0.00 4.02
59 60 4.760204 GCCAACCCATACATGTATAAGTCC 59.240 45.833 17.86 7.26 0.00 3.85
60 61 4.760204 GGCCAACCCATACATGTATAAGTC 59.240 45.833 17.86 6.96 0.00 3.01
61 62 4.415512 AGGCCAACCCATACATGTATAAGT 59.584 41.667 17.86 14.56 36.11 2.24
62 63 4.761739 CAGGCCAACCCATACATGTATAAG 59.238 45.833 17.86 13.96 36.11 1.73
63 64 4.447034 CCAGGCCAACCCATACATGTATAA 60.447 45.833 17.86 0.00 36.11 0.98
64 65 3.073798 CCAGGCCAACCCATACATGTATA 59.926 47.826 17.86 0.00 36.11 1.47
65 66 2.158475 CCAGGCCAACCCATACATGTAT 60.158 50.000 12.75 12.75 36.11 2.29
66 67 1.214175 CCAGGCCAACCCATACATGTA 59.786 52.381 8.27 8.27 36.11 2.29
67 68 0.033208 CCAGGCCAACCCATACATGT 60.033 55.000 5.01 2.69 36.11 3.21
68 69 0.756442 CCCAGGCCAACCCATACATG 60.756 60.000 5.01 0.00 36.11 3.21
69 70 1.221213 ACCCAGGCCAACCCATACAT 61.221 55.000 5.01 0.00 36.11 2.29
70 71 1.439524 AACCCAGGCCAACCCATACA 61.440 55.000 5.01 0.00 36.11 2.29
71 72 0.252057 AAACCCAGGCCAACCCATAC 60.252 55.000 5.01 0.00 36.11 2.39
72 73 1.286553 CTAAACCCAGGCCAACCCATA 59.713 52.381 5.01 0.00 36.11 2.74
73 74 0.041090 CTAAACCCAGGCCAACCCAT 59.959 55.000 5.01 0.00 36.11 4.00
74 75 1.365105 ACTAAACCCAGGCCAACCCA 61.365 55.000 5.01 0.00 36.11 4.51
75 76 0.178944 AACTAAACCCAGGCCAACCC 60.179 55.000 5.01 0.00 36.11 4.11
76 77 1.343142 CAAACTAAACCCAGGCCAACC 59.657 52.381 5.01 0.00 0.00 3.77
77 78 1.343142 CCAAACTAAACCCAGGCCAAC 59.657 52.381 5.01 0.00 0.00 3.77
78 79 1.218196 TCCAAACTAAACCCAGGCCAA 59.782 47.619 5.01 0.00 0.00 4.52
79 80 0.854218 TCCAAACTAAACCCAGGCCA 59.146 50.000 5.01 0.00 0.00 5.36
80 81 2.231716 ATCCAAACTAAACCCAGGCC 57.768 50.000 0.00 0.00 0.00 5.19
81 82 4.083565 TGTAATCCAAACTAAACCCAGGC 58.916 43.478 0.00 0.00 0.00 4.85
82 83 6.658188 TTTGTAATCCAAACTAAACCCAGG 57.342 37.500 0.00 0.00 38.12 4.45
93 94 6.557568 ACCTGGGAATAGTTTGTAATCCAAA 58.442 36.000 0.00 0.00 40.71 3.28
94 95 6.147437 ACCTGGGAATAGTTTGTAATCCAA 57.853 37.500 0.00 0.00 31.63 3.53
95 96 5.789574 ACCTGGGAATAGTTTGTAATCCA 57.210 39.130 0.00 0.00 31.63 3.41
96 97 7.284716 CCTAAACCTGGGAATAGTTTGTAATCC 59.715 40.741 0.00 0.00 35.45 3.01
97 98 7.201794 GCCTAAACCTGGGAATAGTTTGTAATC 60.202 40.741 0.00 0.00 35.45 1.75
98 99 6.605995 GCCTAAACCTGGGAATAGTTTGTAAT 59.394 38.462 0.00 0.00 35.45 1.89
99 100 5.947566 GCCTAAACCTGGGAATAGTTTGTAA 59.052 40.000 0.00 0.00 35.45 2.41
100 101 5.252164 AGCCTAAACCTGGGAATAGTTTGTA 59.748 40.000 0.00 0.00 35.45 2.41
101 102 4.044191 AGCCTAAACCTGGGAATAGTTTGT 59.956 41.667 0.00 0.00 35.45 2.83
102 103 4.600062 AGCCTAAACCTGGGAATAGTTTG 58.400 43.478 0.00 0.00 35.45 2.93
103 104 4.291249 TGAGCCTAAACCTGGGAATAGTTT 59.709 41.667 0.00 0.00 37.47 2.66
104 105 3.850173 TGAGCCTAAACCTGGGAATAGTT 59.150 43.478 0.00 0.00 0.00 2.24
105 106 3.200165 GTGAGCCTAAACCTGGGAATAGT 59.800 47.826 0.00 0.00 0.00 2.12
106 107 3.741388 CGTGAGCCTAAACCTGGGAATAG 60.741 52.174 0.00 0.00 0.00 1.73
107 108 2.169769 CGTGAGCCTAAACCTGGGAATA 59.830 50.000 0.00 0.00 0.00 1.75
108 109 1.065418 CGTGAGCCTAAACCTGGGAAT 60.065 52.381 0.00 0.00 0.00 3.01
109 110 0.323629 CGTGAGCCTAAACCTGGGAA 59.676 55.000 0.00 0.00 0.00 3.97
110 111 0.543410 TCGTGAGCCTAAACCTGGGA 60.543 55.000 0.00 0.00 0.00 4.37
111 112 0.391263 GTCGTGAGCCTAAACCTGGG 60.391 60.000 0.00 0.00 0.00 4.45
112 113 0.320374 TGTCGTGAGCCTAAACCTGG 59.680 55.000 0.00 0.00 0.00 4.45
113 114 2.271800 GATGTCGTGAGCCTAAACCTG 58.728 52.381 0.00 0.00 0.00 4.00
114 115 1.135083 CGATGTCGTGAGCCTAAACCT 60.135 52.381 0.00 0.00 34.11 3.50
115 116 1.135199 TCGATGTCGTGAGCCTAAACC 60.135 52.381 2.04 0.00 40.80 3.27
116 117 2.273370 TCGATGTCGTGAGCCTAAAC 57.727 50.000 2.04 0.00 40.80 2.01
117 118 4.142337 TGTTATCGATGTCGTGAGCCTAAA 60.142 41.667 8.54 0.00 40.80 1.85
118 119 3.379057 TGTTATCGATGTCGTGAGCCTAA 59.621 43.478 8.54 0.00 40.80 2.69
119 120 2.946990 TGTTATCGATGTCGTGAGCCTA 59.053 45.455 8.54 0.00 40.80 3.93
120 121 1.749063 TGTTATCGATGTCGTGAGCCT 59.251 47.619 8.54 0.00 40.80 4.58
121 122 2.203800 TGTTATCGATGTCGTGAGCC 57.796 50.000 8.54 0.00 40.80 4.70
122 123 3.060272 CCATTGTTATCGATGTCGTGAGC 60.060 47.826 8.54 0.00 40.80 4.26
123 124 3.490896 CCCATTGTTATCGATGTCGTGAG 59.509 47.826 8.54 0.00 40.80 3.51
124 125 3.118920 ACCCATTGTTATCGATGTCGTGA 60.119 43.478 8.54 0.00 40.80 4.35
125 126 3.001228 CACCCATTGTTATCGATGTCGTG 59.999 47.826 8.54 0.70 40.80 4.35
126 127 3.194861 CACCCATTGTTATCGATGTCGT 58.805 45.455 8.54 0.00 40.80 4.34
127 128 2.543848 CCACCCATTGTTATCGATGTCG 59.456 50.000 8.54 0.00 41.45 4.35
128 129 2.290641 GCCACCCATTGTTATCGATGTC 59.709 50.000 8.54 1.35 34.54 3.06
129 130 2.297701 GCCACCCATTGTTATCGATGT 58.702 47.619 8.54 0.00 34.54 3.06
130 131 2.296792 TGCCACCCATTGTTATCGATG 58.703 47.619 8.54 0.00 35.74 3.84
131 132 2.727123 TGCCACCCATTGTTATCGAT 57.273 45.000 2.16 2.16 0.00 3.59
132 133 2.727123 ATGCCACCCATTGTTATCGA 57.273 45.000 0.00 0.00 0.00 3.59
140 141 1.037030 CCGCTACAATGCCACCCATT 61.037 55.000 0.00 0.00 44.86 3.16
141 142 1.453745 CCGCTACAATGCCACCCAT 60.454 57.895 0.00 0.00 35.06 4.00
142 143 2.045438 CCGCTACAATGCCACCCA 60.045 61.111 0.00 0.00 0.00 4.51
143 144 3.518068 GCCGCTACAATGCCACCC 61.518 66.667 0.00 0.00 0.00 4.61
144 145 2.270297 CTTGCCGCTACAATGCCACC 62.270 60.000 0.00 0.00 0.00 4.61
145 146 1.137404 CTTGCCGCTACAATGCCAC 59.863 57.895 0.00 0.00 0.00 5.01
146 147 2.699768 GCTTGCCGCTACAATGCCA 61.700 57.895 0.00 0.00 35.14 4.92
147 148 2.102946 GCTTGCCGCTACAATGCC 59.897 61.111 0.00 0.00 35.14 4.40
148 149 2.277501 CGCTTGCCGCTACAATGC 60.278 61.111 0.00 0.00 36.13 3.56
157 158 2.993220 TCATATAGTTATGCGCTTGCCG 59.007 45.455 9.73 0.00 36.03 5.69
158 159 4.872691 AGATCATATAGTTATGCGCTTGCC 59.127 41.667 9.73 0.00 36.03 4.52
159 160 6.414408 AAGATCATATAGTTATGCGCTTGC 57.586 37.500 9.73 0.00 36.03 4.01
539 540 9.108284 CACCCACTTGAAAAAGATTAAAAACAT 57.892 29.630 0.00 0.00 0.00 2.71
540 541 7.065204 GCACCCACTTGAAAAAGATTAAAAACA 59.935 33.333 0.00 0.00 0.00 2.83
541 542 7.065204 TGCACCCACTTGAAAAAGATTAAAAAC 59.935 33.333 0.00 0.00 0.00 2.43
542 543 7.106239 TGCACCCACTTGAAAAAGATTAAAAA 58.894 30.769 0.00 0.00 0.00 1.94
604 605 8.634444 TCTAGACTAGAGGAATACTGCAAATTC 58.366 37.037 8.17 11.34 33.44 2.17
611 612 7.719633 AGCTTCTTCTAGACTAGAGGAATACTG 59.280 40.741 27.80 20.03 45.82 2.74
623 624 9.430623 GAAGTAATTTCAAGCTTCTTCTAGACT 57.569 33.333 12.26 2.70 35.69 3.24
624 625 9.430623 AGAAGTAATTTCAAGCTTCTTCTAGAC 57.569 33.333 17.89 3.89 43.33 2.59
652 653 4.314961 TCACACGCATCAGTTAATCAGTT 58.685 39.130 0.00 0.00 0.00 3.16
668 669 5.170625 CGGTTAATCAGTTGTTTTTCACACG 59.829 40.000 0.00 0.00 33.98 4.49
679 686 5.856455 GGTTGTTTCATCGGTTAATCAGTTG 59.144 40.000 0.00 0.00 0.00 3.16
725 732 1.750399 CCAATTCACCCCCGCAGAG 60.750 63.158 0.00 0.00 0.00 3.35
766 773 9.778741 CCTACCATAATAGAAGTAATTTGCTGA 57.221 33.333 0.00 0.00 0.00 4.26
1150 1423 2.680965 GGGAAAATCGGGGAGGCA 59.319 61.111 0.00 0.00 0.00 4.75
1175 1448 2.426024 CCGAAACTAGATCGAGACCCAA 59.574 50.000 19.39 0.00 42.76 4.12
1176 1449 2.022195 CCGAAACTAGATCGAGACCCA 58.978 52.381 19.39 0.00 42.76 4.51
1178 1451 1.269154 GGCCGAAACTAGATCGAGACC 60.269 57.143 19.39 14.58 42.76 3.85
1226 1499 0.165944 CAGGTGTTCGACGAAATGCC 59.834 55.000 12.67 13.92 0.00 4.40
1283 1557 3.195698 GAATCACGACCTGCGGGC 61.196 66.667 12.89 3.44 44.96 6.13
1311 1585 0.317799 ATATCTCGCTGCTGCTGAGG 59.682 55.000 25.06 8.98 38.96 3.86
1463 1737 1.635663 GAACAGGAACACGATGCCGG 61.636 60.000 0.00 0.00 40.78 6.13
1467 1741 1.721389 CAGACGAACAGGAACACGATG 59.279 52.381 0.00 0.00 0.00 3.84
1468 1742 1.340248 ACAGACGAACAGGAACACGAT 59.660 47.619 0.00 0.00 0.00 3.73
1471 1745 1.865340 GGAACAGACGAACAGGAACAC 59.135 52.381 0.00 0.00 0.00 3.32
1472 1746 1.760613 AGGAACAGACGAACAGGAACA 59.239 47.619 0.00 0.00 0.00 3.18
1473 1747 2.528041 AGGAACAGACGAACAGGAAC 57.472 50.000 0.00 0.00 0.00 3.62
1474 1748 2.432874 TGAAGGAACAGACGAACAGGAA 59.567 45.455 0.00 0.00 0.00 3.36
1475 1749 2.036387 TGAAGGAACAGACGAACAGGA 58.964 47.619 0.00 0.00 0.00 3.86
1476 1750 2.135933 GTGAAGGAACAGACGAACAGG 58.864 52.381 0.00 0.00 0.00 4.00
1477 1751 3.099267 AGTGAAGGAACAGACGAACAG 57.901 47.619 0.00 0.00 0.00 3.16
1478 1752 3.536956 AAGTGAAGGAACAGACGAACA 57.463 42.857 0.00 0.00 0.00 3.18
1484 1758 5.129634 TGCACAAATAAGTGAAGGAACAGA 58.870 37.500 0.00 0.00 42.05 3.41
1505 1779 1.978454 AGAGCATTTAGGCATCCTGC 58.022 50.000 0.00 0.00 44.08 4.85
1506 1780 3.066342 CACAAGAGCATTTAGGCATCCTG 59.934 47.826 0.00 0.00 34.61 3.86
1507 1781 3.285484 CACAAGAGCATTTAGGCATCCT 58.715 45.455 0.00 0.00 37.71 3.24
1508 1782 2.223665 GCACAAGAGCATTTAGGCATCC 60.224 50.000 0.00 0.00 35.83 3.51
1514 1788 2.415090 GCACCAGCACAAGAGCATTTAG 60.415 50.000 0.00 0.00 41.58 1.85
1531 1805 1.219393 GGCTCTCCTACACAGCACC 59.781 63.158 0.00 0.00 34.62 5.01
1578 1852 1.378250 GCCAGCCATGCAGTTCTCT 60.378 57.895 0.00 0.00 0.00 3.10
1706 1986 1.271656 ACCGGTCTAAGAAACAGGACG 59.728 52.381 0.00 0.00 35.77 4.79
1813 2093 5.595885 TGGATTCTTAAGAAGAGATGCTCG 58.404 41.667 21.75 0.00 39.03 5.03
1858 2138 8.579006 AGCACAAAATTAGACATCAGAATCAAA 58.421 29.630 0.00 0.00 0.00 2.69
2050 2330 5.277058 CGCAGGCACTAGATTTTAGTGAATC 60.277 44.000 16.32 6.62 45.69 2.52
2295 2579 1.210155 GGCCTGCTACGCTGTTTTG 59.790 57.895 0.00 0.00 0.00 2.44
2340 2647 9.865321 GGCATGTTATATTAATCATTCTGCAAT 57.135 29.630 0.00 0.00 0.00 3.56
2341 2648 9.081204 AGGCATGTTATATTAATCATTCTGCAA 57.919 29.630 0.00 0.00 0.00 4.08
2342 2649 8.640063 AGGCATGTTATATTAATCATTCTGCA 57.360 30.769 0.00 0.00 0.00 4.41
2343 2650 9.994432 GTAGGCATGTTATATTAATCATTCTGC 57.006 33.333 0.00 0.00 0.00 4.26
2705 3012 5.574830 GTGTAACATGCCATGCGAAAATAAA 59.425 36.000 4.17 0.00 36.32 1.40
2764 3071 5.736616 ACTGACTAATAAAGGGAGGGGAAAT 59.263 40.000 0.00 0.00 0.00 2.17
2951 3266 7.327214 TGAAAGTTAAGGCAAGAATGTTTTGT 58.673 30.769 0.00 0.00 0.00 2.83
3004 3319 7.702785 ACATATGCATGAATTAAGGTAGGGAT 58.297 34.615 10.16 0.00 35.96 3.85
3391 3754 9.866655 ATAACATGTCTGTAAACAATCCCATAT 57.133 29.630 0.00 0.00 33.36 1.78
3404 3767 5.950544 AGGCTGGTAATAACATGTCTGTA 57.049 39.130 0.00 0.00 33.36 2.74
3539 3902 7.865707 ACAAAGTAAACATCAGAGATGTCAAC 58.134 34.615 12.53 12.78 0.00 3.18
3993 4360 9.802039 AGGACCATAGTTAGAAAAACATGTTAA 57.198 29.630 12.39 0.00 0.00 2.01
3995 4362 8.706322 AAGGACCATAGTTAGAAAAACATGTT 57.294 30.769 4.92 4.92 0.00 2.71
3996 4363 8.576442 CAAAGGACCATAGTTAGAAAAACATGT 58.424 33.333 0.00 0.00 0.00 3.21
3999 4366 7.469456 GCACAAAGGACCATAGTTAGAAAAACA 60.469 37.037 0.00 0.00 0.00 2.83
4000 4367 6.861572 GCACAAAGGACCATAGTTAGAAAAAC 59.138 38.462 0.00 0.00 0.00 2.43
4003 4389 5.876357 AGCACAAAGGACCATAGTTAGAAA 58.124 37.500 0.00 0.00 0.00 2.52
4203 4589 3.101437 AGCTTGATCCCATTTGAATGCA 58.899 40.909 0.00 0.00 35.08 3.96
4259 4645 8.251383 ACAGTATATGAATACCTGTGTAGCTT 57.749 34.615 0.00 0.00 39.08 3.74
4344 4730 7.116376 CACAAGAAAGAGAAAGTAAGCATACGA 59.884 37.037 0.00 0.00 37.11 3.43
4428 4814 5.163416 TGCCTTTAGCTTTGCTTCTTTTTCT 60.163 36.000 0.00 0.00 44.23 2.52
4612 5000 6.213195 ACTTCTCACCTCTTCTGATCTTTGAT 59.787 38.462 0.00 0.00 0.00 2.57
4883 5272 7.949434 ACCAACTATATTAGTGTAGGCAGTAC 58.051 38.462 0.00 0.00 39.39 2.73
4997 5386 9.178758 GAAAGTGGATACCTGATGTTCTAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
5038 5427 3.568007 TCACTGAAAATTTCCCCTTCACG 59.432 43.478 3.00 0.00 0.00 4.35
5207 5597 8.302515 ACGGGAGAGAAGTCTACAAATTATAA 57.697 34.615 0.00 0.00 34.89 0.98
5225 5615 5.566826 GCATATATCTGCACTAAACGGGAGA 60.567 44.000 8.13 0.00 41.87 3.71
5230 5620 6.422100 AGTTCTGCATATATCTGCACTAAACG 59.578 38.462 11.43 2.20 46.76 3.60
5251 5641 8.300286 AGCTAGCTAAGGAAAATTCAAAAGTTC 58.700 33.333 17.69 0.00 0.00 3.01
5267 5657 7.064609 TGCAAGTATTTGTAACAGCTAGCTAAG 59.935 37.037 18.86 8.88 36.65 2.18
5330 5720 4.285775 TGCGGAAGTCATTATGGGATATCA 59.714 41.667 4.83 0.00 0.00 2.15
5350 5740 2.544685 CAAATAGTGAGAGGTCCTGCG 58.455 52.381 0.00 0.00 0.00 5.18
5457 5847 7.649306 CAGGTTGTTTTAAAAGATCTGTGAAGG 59.351 37.037 12.96 0.00 0.00 3.46
5519 5914 3.468071 TTAAGTCAGCTACCTCCTCCA 57.532 47.619 0.00 0.00 0.00 3.86
5863 6325 2.942710 ACACCTGTAATCTCGTTCGTG 58.057 47.619 0.00 0.00 0.00 4.35
5910 6373 7.653647 ACAGTGACTTGAAACACTAACAAAAA 58.346 30.769 0.00 0.00 44.07 1.94
6007 6470 4.376340 AAGCAGAGAAAACAACAACAGG 57.624 40.909 0.00 0.00 0.00 4.00
6008 6471 5.296780 TCCTAAGCAGAGAAAACAACAACAG 59.703 40.000 0.00 0.00 0.00 3.16
6034 6500 2.224769 CCCACCAACTTTCTAGGCTTCA 60.225 50.000 0.00 0.00 0.00 3.02
6196 6665 4.225267 ACTCCAACCCACCAACTATTCTAG 59.775 45.833 0.00 0.00 0.00 2.43
6315 6821 3.136626 GGGGTTGATCTACACCTATGCTT 59.863 47.826 19.90 0.00 38.62 3.91
6348 6854 6.707161 AGTAAATCAAACAAAATGCAGCACAT 59.293 30.769 0.00 0.00 42.30 3.21
6482 7126 7.233348 AGGAACATAATTCCAGACACACAAAAT 59.767 33.333 8.35 0.00 41.00 1.82
6833 7984 5.907207 TGACAATAGCCTGTTCATAGAGAC 58.093 41.667 0.00 0.00 0.00 3.36
7005 8173 5.397360 TCATCCACTATCATAGGCTCTTCA 58.603 41.667 0.00 0.00 0.00 3.02
7065 8233 3.852572 GCTGAAGCTGCAGTTCTGAAAAG 60.853 47.826 23.08 16.91 38.17 2.27
7167 8337 5.663456 TGATTGCTTTGCTCAGAAAACTTT 58.337 33.333 0.00 0.00 0.00 2.66
7170 8340 5.224888 TCATGATTGCTTTGCTCAGAAAAC 58.775 37.500 0.00 0.00 0.00 2.43
7322 8492 7.439356 TGAACTGAATGTCTTCTGTAGTTTCAG 59.561 37.037 15.36 15.36 41.17 3.02
7356 8526 1.755179 AACCCTCAGCATCCATTTCG 58.245 50.000 0.00 0.00 0.00 3.46
7595 8765 3.482783 GTGCGGACTTGAGAGCGC 61.483 66.667 0.00 0.00 35.70 5.92
7599 8769 0.315251 CTGACAGTGCGGACTTGAGA 59.685 55.000 6.93 0.00 0.00 3.27
7619 8789 2.731976 GCGTTTTCTCTCTCGTGTGATT 59.268 45.455 0.00 0.00 0.00 2.57
7649 8819 1.635663 CGCGGGCGAGAAAATCTTGT 61.636 55.000 7.38 0.00 42.83 3.16
7704 8874 1.072505 GAACTTGGACCCGGCAAGA 59.927 57.895 22.37 0.00 0.00 3.02
7722 8892 1.561717 TTGATTCCACGTTGACGCCG 61.562 55.000 3.05 0.00 44.43 6.46
7781 8951 2.030805 GCAGCAGAAATCTCGGTTTTGT 60.031 45.455 0.00 0.00 0.00 2.83
7824 8994 1.497991 TGTTTCTCAGCTCGGTTTCG 58.502 50.000 0.00 0.00 37.82 3.46
7875 9045 0.898320 CCTTCCTCTGAGCCTCGAAA 59.102 55.000 0.00 0.00 0.00 3.46
7887 9057 0.537653 CCCTTTCCGTCTCCTTCCTC 59.462 60.000 0.00 0.00 0.00 3.71
7899 9069 0.036306 TGGCGAAGAGAACCCTTTCC 59.964 55.000 0.00 0.00 31.28 3.13
7939 9109 2.113139 CTTCTGCAACGGGGTGGT 59.887 61.111 0.00 0.00 0.00 4.16
7944 9114 2.361610 ATGGGCTTCTGCAACGGG 60.362 61.111 0.00 0.00 41.91 5.28
8010 9180 7.096551 ACTTCTTCAGTTCAGATAAGAGCTTC 58.903 38.462 0.00 0.00 27.32 3.86
8053 9223 4.633565 GCTCTTGATCTCCTTTTGAACGAT 59.366 41.667 0.00 0.00 0.00 3.73
8055 9225 3.748048 TGCTCTTGATCTCCTTTTGAACG 59.252 43.478 0.00 0.00 0.00 3.95
8058 9228 5.169992 TCATGCTCTTGATCTCCTTTTGA 57.830 39.130 0.00 0.00 0.00 2.69
8061 9231 3.779183 TCCTCATGCTCTTGATCTCCTTT 59.221 43.478 0.00 0.00 0.00 3.11
8151 9321 3.649277 CTCGGTGTCGGCTTCCAGG 62.649 68.421 0.00 0.00 36.95 4.45
8163 9333 0.949105 CCCGGACAAACTTCTCGGTG 60.949 60.000 0.73 0.00 39.13 4.94
8200 9370 1.004044 CTTCTGCTGAACCTCCCACAT 59.996 52.381 1.33 0.00 0.00 3.21
8202 9372 0.322008 CCTTCTGCTGAACCTCCCAC 60.322 60.000 1.33 0.00 0.00 4.61
8498 9668 3.612423 GGTTCGCAACAAATCTTATTGGC 59.388 43.478 2.28 0.00 34.56 4.52
8533 9713 3.371021 AGACCAGCCTGTCTGTCG 58.629 61.111 5.02 0.00 43.80 4.35
8555 9735 4.832248 AGAATTTGTACAGATGAAGGCGA 58.168 39.130 0.00 0.00 0.00 5.54
8614 9795 6.467723 ACAAACTACAGAATCGAATCACAC 57.532 37.500 2.82 0.00 0.00 3.82
8680 9861 7.069455 TGCATGCTAGTACCTTTTCTAGTCATA 59.931 37.037 20.33 0.00 36.84 2.15
8694 9875 7.658179 TTGCTAGATTATTGCATGCTAGTAC 57.342 36.000 20.33 6.27 39.44 2.73
8856 10037 1.079612 CACCGTCAGCAGCAGATCA 60.080 57.895 0.00 0.00 0.00 2.92
9119 10300 1.153369 GCTGCGGCCAGAGATACAA 60.153 57.895 6.12 0.00 41.77 2.41
9413 10771 6.299141 TCTAAATGGGTATTTGAGATCTGGC 58.701 40.000 0.00 0.00 37.12 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.