Multiple sequence alignment - TraesCS5B01G394900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G394900 chr5B 100.000 3068 0 0 1 3068 572405099 572402032 0.000000e+00 5666.0
1 TraesCS5B01G394900 chr5B 72.401 779 146 48 1160 1899 267280118 267279370 1.880000e-42 183.0
2 TraesCS5B01G394900 chr5A 93.321 1617 77 11 706 2297 585440940 585439330 0.000000e+00 2359.0
3 TraesCS5B01G394900 chr5A 85.577 520 37 20 2583 3068 585438372 585437857 7.590000e-141 510.0
4 TraesCS5B01G394900 chr5A 85.876 177 8 5 2431 2592 585438993 585438819 4.070000e-39 172.0
5 TraesCS5B01G394900 chr7A 83.175 422 55 13 288 705 36518420 36518011 3.740000e-99 372.0
6 TraesCS5B01G394900 chr5D 93.033 244 17 0 1869 2112 465086686 465086929 1.050000e-94 357.0
7 TraesCS5B01G394900 chr3B 78.846 104 19 3 189 290 598047336 598047438 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G394900 chr5B 572402032 572405099 3067 True 5666.000000 5666 100.000 1 3068 1 chr5B.!!$R2 3067
1 TraesCS5B01G394900 chr5A 585437857 585440940 3083 True 1013.666667 2359 88.258 706 3068 3 chr5A.!!$R1 2362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 606 0.02877 TCAAGCGCAACAGTTTTCCG 59.971 50.0 11.47 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2327 0.034574 TCAACACTGCCACCAACTGT 60.035 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.884465 AAATGTTCGTTTTTCAAATTTTGTTCA 57.116 22.222 8.89 0.00 0.00 3.18
40 41 9.540431 AATGTTCGTTTTTCAAATTTTGTTCAG 57.460 25.926 8.89 0.00 0.00 3.02
41 42 7.513968 TGTTCGTTTTTCAAATTTTGTTCAGG 58.486 30.769 8.89 0.00 0.00 3.86
42 43 7.385205 TGTTCGTTTTTCAAATTTTGTTCAGGA 59.615 29.630 8.89 1.79 0.00 3.86
43 44 7.284518 TCGTTTTTCAAATTTTGTTCAGGAC 57.715 32.000 8.89 2.38 0.00 3.85
44 45 7.093992 TCGTTTTTCAAATTTTGTTCAGGACT 58.906 30.769 8.89 0.00 0.00 3.85
45 46 7.600752 TCGTTTTTCAAATTTTGTTCAGGACTT 59.399 29.630 8.89 0.00 0.00 3.01
46 47 8.227119 CGTTTTTCAAATTTTGTTCAGGACTTT 58.773 29.630 8.89 0.00 0.00 2.66
75 76 8.806429 AAAAATGTCCCTGTTCAAATCTTTTT 57.194 26.923 0.00 0.00 0.00 1.94
76 77 8.437360 AAAATGTCCCTGTTCAAATCTTTTTC 57.563 30.769 0.00 0.00 0.00 2.29
77 78 6.983906 ATGTCCCTGTTCAAATCTTTTTCT 57.016 33.333 0.00 0.00 0.00 2.52
78 79 6.391227 TGTCCCTGTTCAAATCTTTTTCTC 57.609 37.500 0.00 0.00 0.00 2.87
79 80 5.890985 TGTCCCTGTTCAAATCTTTTTCTCA 59.109 36.000 0.00 0.00 0.00 3.27
80 81 6.379703 TGTCCCTGTTCAAATCTTTTTCTCAA 59.620 34.615 0.00 0.00 0.00 3.02
81 82 7.093552 TGTCCCTGTTCAAATCTTTTTCTCAAA 60.094 33.333 0.00 0.00 0.00 2.69
82 83 7.928167 GTCCCTGTTCAAATCTTTTTCTCAAAT 59.072 33.333 0.00 0.00 0.00 2.32
83 84 8.485392 TCCCTGTTCAAATCTTTTTCTCAAATT 58.515 29.630 0.00 0.00 0.00 1.82
84 85 9.112725 CCCTGTTCAAATCTTTTTCTCAAATTT 57.887 29.630 0.00 0.00 0.00 1.82
132 133 7.910441 TTTACTCGGGAGTTTAAAATACTGG 57.090 36.000 6.65 1.10 42.54 4.00
133 134 5.494390 ACTCGGGAGTTTAAAATACTGGT 57.506 39.130 6.85 1.68 38.83 4.00
134 135 5.485620 ACTCGGGAGTTTAAAATACTGGTC 58.514 41.667 6.85 0.00 38.83 4.02
135 136 4.497300 TCGGGAGTTTAAAATACTGGTCG 58.503 43.478 6.85 0.00 0.00 4.79
136 137 3.063045 CGGGAGTTTAAAATACTGGTCGC 59.937 47.826 0.00 0.00 0.00 5.19
137 138 4.004982 GGGAGTTTAAAATACTGGTCGCA 58.995 43.478 0.00 0.00 0.00 5.10
138 139 4.638865 GGGAGTTTAAAATACTGGTCGCAT 59.361 41.667 0.00 0.00 0.00 4.73
139 140 5.124936 GGGAGTTTAAAATACTGGTCGCATT 59.875 40.000 0.00 0.00 0.00 3.56
140 141 6.349860 GGGAGTTTAAAATACTGGTCGCATTT 60.350 38.462 0.00 0.00 0.00 2.32
141 142 6.745907 GGAGTTTAAAATACTGGTCGCATTTC 59.254 38.462 0.00 0.00 0.00 2.17
142 143 7.209471 AGTTTAAAATACTGGTCGCATTTCA 57.791 32.000 0.00 0.00 0.00 2.69
143 144 7.826690 AGTTTAAAATACTGGTCGCATTTCAT 58.173 30.769 0.00 0.00 0.00 2.57
144 145 8.952278 AGTTTAAAATACTGGTCGCATTTCATA 58.048 29.630 0.00 0.00 0.00 2.15
145 146 9.730420 GTTTAAAATACTGGTCGCATTTCATAT 57.270 29.630 0.00 0.00 0.00 1.78
149 150 9.897744 AAAATACTGGTCGCATTTCATATAATG 57.102 29.630 0.00 0.00 38.31 1.90
150 151 8.621532 AATACTGGTCGCATTTCATATAATGT 57.378 30.769 0.00 0.00 37.72 2.71
151 152 6.942532 ACTGGTCGCATTTCATATAATGTT 57.057 33.333 0.00 0.00 37.72 2.71
152 153 7.333528 ACTGGTCGCATTTCATATAATGTTT 57.666 32.000 0.00 0.00 37.72 2.83
153 154 7.195646 ACTGGTCGCATTTCATATAATGTTTG 58.804 34.615 0.00 0.00 37.72 2.93
154 155 7.094508 TGGTCGCATTTCATATAATGTTTGT 57.905 32.000 0.00 0.00 37.72 2.83
155 156 6.971756 TGGTCGCATTTCATATAATGTTTGTG 59.028 34.615 0.00 0.00 37.72 3.33
156 157 6.972328 GGTCGCATTTCATATAATGTTTGTGT 59.028 34.615 0.00 0.00 37.72 3.72
157 158 8.126074 GGTCGCATTTCATATAATGTTTGTGTA 58.874 33.333 0.00 0.00 37.72 2.90
158 159 9.497030 GTCGCATTTCATATAATGTTTGTGTAA 57.503 29.630 0.00 0.00 37.72 2.41
172 173 7.145932 TGTTTGTGTAAATTTTGTTTTGGGG 57.854 32.000 0.00 0.00 0.00 4.96
173 174 6.715264 TGTTTGTGTAAATTTTGTTTTGGGGT 59.285 30.769 0.00 0.00 0.00 4.95
174 175 7.230712 TGTTTGTGTAAATTTTGTTTTGGGGTT 59.769 29.630 0.00 0.00 0.00 4.11
175 176 7.761038 TTGTGTAAATTTTGTTTTGGGGTTT 57.239 28.000 0.00 0.00 0.00 3.27
176 177 8.857694 TTGTGTAAATTTTGTTTTGGGGTTTA 57.142 26.923 0.00 0.00 0.00 2.01
177 178 8.857694 TGTGTAAATTTTGTTTTGGGGTTTAA 57.142 26.923 0.00 0.00 0.00 1.52
178 179 9.462606 TGTGTAAATTTTGTTTTGGGGTTTAAT 57.537 25.926 0.00 0.00 0.00 1.40
183 184 9.688091 AAATTTTGTTTTGGGGTTTAATACTGT 57.312 25.926 0.00 0.00 0.00 3.55
184 185 9.688091 AATTTTGTTTTGGGGTTTAATACTGTT 57.312 25.926 0.00 0.00 0.00 3.16
185 186 8.719560 TTTTGTTTTGGGGTTTAATACTGTTC 57.280 30.769 0.00 0.00 0.00 3.18
186 187 7.663043 TTGTTTTGGGGTTTAATACTGTTCT 57.337 32.000 0.00 0.00 0.00 3.01
187 188 7.663043 TGTTTTGGGGTTTAATACTGTTCTT 57.337 32.000 0.00 0.00 0.00 2.52
188 189 8.763984 TGTTTTGGGGTTTAATACTGTTCTTA 57.236 30.769 0.00 0.00 0.00 2.10
189 190 9.198475 TGTTTTGGGGTTTAATACTGTTCTTAA 57.802 29.630 0.00 0.00 0.00 1.85
227 228 9.823098 TGTTGATGTTTTCAAATTTTGTTCAAG 57.177 25.926 8.89 0.00 45.71 3.02
230 231 9.434420 TGATGTTTTCAAATTTTGTTCAAGACT 57.566 25.926 8.89 0.00 0.00 3.24
233 234 9.875675 TGTTTTCAAATTTTGTTCAAGACTTTG 57.124 25.926 8.89 0.00 35.57 2.77
261 262 8.710835 AAAAAGTTCGTGTATCCAAAAATTGT 57.289 26.923 0.00 0.00 0.00 2.71
262 263 8.710835 AAAAGTTCGTGTATCCAAAAATTGTT 57.289 26.923 0.00 0.00 0.00 2.83
263 264 8.710835 AAAGTTCGTGTATCCAAAAATTGTTT 57.289 26.923 0.00 0.00 0.00 2.83
264 265 8.710835 AAGTTCGTGTATCCAAAAATTGTTTT 57.289 26.923 0.00 0.00 37.43 2.43
285 286 8.759641 TGTTTTGGAATATGAAAAATGTTCACG 58.240 29.630 0.00 0.00 0.00 4.35
286 287 8.760569 GTTTTGGAATATGAAAAATGTTCACGT 58.239 29.630 0.00 0.00 0.00 4.49
287 288 8.879342 TTTGGAATATGAAAAATGTTCACGTT 57.121 26.923 0.00 0.00 0.00 3.99
288 289 8.879342 TTGGAATATGAAAAATGTTCACGTTT 57.121 26.923 0.00 0.00 36.70 3.60
289 290 8.879342 TGGAATATGAAAAATGTTCACGTTTT 57.121 26.923 4.35 4.35 44.33 2.43
290 291 8.973378 TGGAATATGAAAAATGTTCACGTTTTC 58.027 29.630 9.74 9.84 42.37 2.29
291 292 8.973378 GGAATATGAAAAATGTTCACGTTTTCA 58.027 29.630 19.18 19.18 42.37 2.69
296 297 9.701355 ATGAAAAATGTTCACGTTTTCAATTTC 57.299 25.926 20.04 12.37 42.37 2.17
297 298 8.171840 TGAAAAATGTTCACGTTTTCAATTTCC 58.828 29.630 16.69 0.00 42.37 3.13
298 299 7.841915 AAAATGTTCACGTTTTCAATTTCCT 57.158 28.000 4.35 0.00 40.00 3.36
299 300 6.826893 AATGTTCACGTTTTCAATTTCCTG 57.173 33.333 0.00 0.00 0.00 3.86
300 301 4.677584 TGTTCACGTTTTCAATTTCCTGG 58.322 39.130 0.00 0.00 0.00 4.45
301 302 4.048504 GTTCACGTTTTCAATTTCCTGGG 58.951 43.478 0.00 0.00 0.00 4.45
302 303 2.625790 TCACGTTTTCAATTTCCTGGGG 59.374 45.455 0.00 0.00 0.00 4.96
303 304 2.625790 CACGTTTTCAATTTCCTGGGGA 59.374 45.455 0.00 0.00 0.00 4.81
304 305 2.890945 ACGTTTTCAATTTCCTGGGGAG 59.109 45.455 0.00 0.00 31.21 4.30
305 306 2.890945 CGTTTTCAATTTCCTGGGGAGT 59.109 45.455 0.00 0.00 31.21 3.85
306 307 3.320826 CGTTTTCAATTTCCTGGGGAGTT 59.679 43.478 0.00 0.00 31.21 3.01
307 308 4.558697 CGTTTTCAATTTCCTGGGGAGTTC 60.559 45.833 0.00 0.00 31.21 3.01
308 309 3.893753 TTCAATTTCCTGGGGAGTTCA 57.106 42.857 0.00 0.00 31.21 3.18
309 310 3.893753 TCAATTTCCTGGGGAGTTCAA 57.106 42.857 0.00 0.00 31.21 2.69
310 311 4.191804 TCAATTTCCTGGGGAGTTCAAA 57.808 40.909 0.00 0.00 31.21 2.69
311 312 4.551671 TCAATTTCCTGGGGAGTTCAAAA 58.448 39.130 0.00 0.00 31.21 2.44
312 313 4.965532 TCAATTTCCTGGGGAGTTCAAAAA 59.034 37.500 0.00 0.00 31.21 1.94
339 340 8.196802 AGTTCCTGTTTTCTAAAATTGTTTGC 57.803 30.769 0.00 0.00 0.00 3.68
340 341 7.821846 AGTTCCTGTTTTCTAAAATTGTTTGCA 59.178 29.630 0.00 0.00 0.00 4.08
341 342 8.611757 GTTCCTGTTTTCTAAAATTGTTTGCAT 58.388 29.630 0.00 0.00 0.00 3.96
342 343 8.729805 TCCTGTTTTCTAAAATTGTTTGCATT 57.270 26.923 0.00 0.00 0.00 3.56
343 344 9.171877 TCCTGTTTTCTAAAATTGTTTGCATTT 57.828 25.926 0.00 0.00 0.00 2.32
344 345 9.786105 CCTGTTTTCTAAAATTGTTTGCATTTT 57.214 25.926 0.00 0.00 31.78 1.82
358 359 9.861138 TTGTTTGCATTTTTCGAAATATTTGAG 57.139 25.926 12.12 2.15 0.00 3.02
359 360 9.039870 TGTTTGCATTTTTCGAAATATTTGAGT 57.960 25.926 12.12 0.00 0.00 3.41
360 361 9.516091 GTTTGCATTTTTCGAAATATTTGAGTC 57.484 29.630 12.12 0.00 0.00 3.36
361 362 9.474920 TTTGCATTTTTCGAAATATTTGAGTCT 57.525 25.926 12.12 0.00 0.00 3.24
362 363 9.474920 TTGCATTTTTCGAAATATTTGAGTCTT 57.525 25.926 12.12 0.00 0.00 3.01
363 364 9.474920 TGCATTTTTCGAAATATTTGAGTCTTT 57.525 25.926 12.12 0.00 0.00 2.52
396 397 9.798885 TTTGTTCACAATTTTTAAAAGTGTTCG 57.201 25.926 18.79 10.45 35.55 3.95
397 398 7.449027 TGTTCACAATTTTTAAAAGTGTTCGC 58.551 30.769 18.79 12.42 32.92 4.70
398 399 7.116376 TGTTCACAATTTTTAAAAGTGTTCGCA 59.884 29.630 18.79 14.36 32.92 5.10
399 400 7.582435 TCACAATTTTTAAAAGTGTTCGCAA 57.418 28.000 18.79 2.79 32.92 4.85
400 401 8.190888 TCACAATTTTTAAAAGTGTTCGCAAT 57.809 26.923 18.79 0.00 32.92 3.56
401 402 8.660373 TCACAATTTTTAAAAGTGTTCGCAATT 58.340 25.926 18.79 0.00 36.94 2.32
402 403 9.271738 CACAATTTTTAAAAGTGTTCGCAATTT 57.728 25.926 18.79 0.00 45.75 1.82
403 404 9.484326 ACAATTTTTAAAAGTGTTCGCAATTTC 57.516 25.926 16.22 0.00 43.46 2.17
404 405 9.483062 CAATTTTTAAAAGTGTTCGCAATTTCA 57.517 25.926 9.36 0.00 43.46 2.69
405 406 9.484326 AATTTTTAAAAGTGTTCGCAATTTCAC 57.516 25.926 0.14 0.00 43.46 3.18
406 407 7.582435 TTTTAAAAGTGTTCGCAATTTCACA 57.418 28.000 0.00 0.00 43.46 3.58
407 408 7.582435 TTTAAAAGTGTTCGCAATTTCACAA 57.418 28.000 0.00 0.00 43.46 3.33
408 409 7.582435 TTAAAAGTGTTCGCAATTTCACAAA 57.418 28.000 0.00 0.00 43.46 2.83
409 410 6.473397 AAAAGTGTTCGCAATTTCACAAAA 57.527 29.167 0.00 0.00 43.46 2.44
410 411 5.448926 AAGTGTTCGCAATTTCACAAAAC 57.551 34.783 0.00 0.00 30.53 2.43
411 412 4.489810 AGTGTTCGCAATTTCACAAAACA 58.510 34.783 0.00 0.00 33.84 2.83
412 413 5.108517 AGTGTTCGCAATTTCACAAAACAT 58.891 33.333 0.00 0.00 33.84 2.71
413 414 5.580297 AGTGTTCGCAATTTCACAAAACATT 59.420 32.000 0.00 0.00 33.84 2.71
414 415 5.895889 GTGTTCGCAATTTCACAAAACATTC 59.104 36.000 0.00 0.00 0.00 2.67
415 416 5.578336 TGTTCGCAATTTCACAAAACATTCA 59.422 32.000 0.00 0.00 0.00 2.57
416 417 5.886715 TCGCAATTTCACAAAACATTCAG 57.113 34.783 0.00 0.00 0.00 3.02
417 418 4.744137 TCGCAATTTCACAAAACATTCAGG 59.256 37.500 0.00 0.00 0.00 3.86
418 419 4.507388 CGCAATTTCACAAAACATTCAGGT 59.493 37.500 0.00 0.00 0.00 4.00
419 420 5.006552 CGCAATTTCACAAAACATTCAGGTT 59.993 36.000 0.00 0.00 0.00 3.50
420 421 6.456718 CGCAATTTCACAAAACATTCAGGTTT 60.457 34.615 0.00 0.00 42.49 3.27
422 423 7.754475 GCAATTTCACAAAACATTCAGGTTTTT 59.246 29.630 0.00 0.00 45.89 1.94
445 446 6.712241 TTTTTCAGAATTGTTTTGCGTTCA 57.288 29.167 0.00 0.00 0.00 3.18
446 447 6.712241 TTTTCAGAATTGTTTTGCGTTCAA 57.288 29.167 0.00 0.00 0.00 2.69
447 448 6.712241 TTTCAGAATTGTTTTGCGTTCAAA 57.288 29.167 0.00 0.00 40.17 2.69
448 449 6.712241 TTCAGAATTGTTTTGCGTTCAAAA 57.288 29.167 0.00 0.00 46.51 2.44
467 468 7.155858 TCAAAATTTTGAAAACGTTCGGATC 57.844 32.000 27.22 0.00 43.62 3.36
468 469 6.975772 TCAAAATTTTGAAAACGTTCGGATCT 59.024 30.769 27.22 0.00 43.62 2.75
469 470 6.747659 AAATTTTGAAAACGTTCGGATCTG 57.252 33.333 0.00 0.00 36.46 2.90
470 471 2.961522 TTGAAAACGTTCGGATCTGC 57.038 45.000 0.00 0.00 36.46 4.26
471 472 1.872388 TGAAAACGTTCGGATCTGCA 58.128 45.000 0.00 0.00 36.46 4.41
472 473 1.529438 TGAAAACGTTCGGATCTGCAC 59.471 47.619 0.00 0.00 36.46 4.57
473 474 1.798813 GAAAACGTTCGGATCTGCACT 59.201 47.619 0.00 0.00 0.00 4.40
474 475 1.429463 AAACGTTCGGATCTGCACTC 58.571 50.000 0.00 0.00 0.00 3.51
475 476 0.732880 AACGTTCGGATCTGCACTCG 60.733 55.000 0.00 4.77 0.00 4.18
476 477 1.874019 CGTTCGGATCTGCACTCGG 60.874 63.158 2.80 0.00 0.00 4.63
477 478 1.215647 GTTCGGATCTGCACTCGGT 59.784 57.895 0.00 0.00 0.00 4.69
478 479 0.389948 GTTCGGATCTGCACTCGGTT 60.390 55.000 0.00 0.00 0.00 4.44
479 480 0.320374 TTCGGATCTGCACTCGGTTT 59.680 50.000 0.00 0.00 0.00 3.27
480 481 0.389817 TCGGATCTGCACTCGGTTTG 60.390 55.000 0.00 0.00 0.00 2.93
481 482 1.361668 CGGATCTGCACTCGGTTTGG 61.362 60.000 0.00 0.00 0.00 3.28
482 483 0.321653 GGATCTGCACTCGGTTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
483 484 1.523758 GATCTGCACTCGGTTTGGTT 58.476 50.000 0.00 0.00 0.00 3.67
484 485 1.464997 GATCTGCACTCGGTTTGGTTC 59.535 52.381 0.00 0.00 0.00 3.62
485 486 0.468226 TCTGCACTCGGTTTGGTTCT 59.532 50.000 0.00 0.00 0.00 3.01
486 487 1.134220 TCTGCACTCGGTTTGGTTCTT 60.134 47.619 0.00 0.00 0.00 2.52
487 488 2.103432 TCTGCACTCGGTTTGGTTCTTA 59.897 45.455 0.00 0.00 0.00 2.10
488 489 2.875933 CTGCACTCGGTTTGGTTCTTAA 59.124 45.455 0.00 0.00 0.00 1.85
489 490 2.875933 TGCACTCGGTTTGGTTCTTAAG 59.124 45.455 0.00 0.00 0.00 1.85
490 491 3.135994 GCACTCGGTTTGGTTCTTAAGA 58.864 45.455 0.00 0.00 0.00 2.10
491 492 3.751698 GCACTCGGTTTGGTTCTTAAGAT 59.248 43.478 5.89 0.00 0.00 2.40
492 493 4.215613 GCACTCGGTTTGGTTCTTAAGATT 59.784 41.667 5.89 0.00 0.00 2.40
493 494 5.617087 GCACTCGGTTTGGTTCTTAAGATTC 60.617 44.000 5.89 3.01 0.00 2.52
494 495 5.701290 CACTCGGTTTGGTTCTTAAGATTCT 59.299 40.000 5.89 0.00 0.00 2.40
495 496 5.701290 ACTCGGTTTGGTTCTTAAGATTCTG 59.299 40.000 5.89 0.00 0.00 3.02
496 497 4.454504 TCGGTTTGGTTCTTAAGATTCTGC 59.545 41.667 5.89 0.00 0.00 4.26
497 498 4.669197 CGGTTTGGTTCTTAAGATTCTGCG 60.669 45.833 5.89 0.00 0.00 5.18
498 499 4.159120 GTTTGGTTCTTAAGATTCTGCGC 58.841 43.478 5.89 0.00 0.00 6.09
499 500 3.052455 TGGTTCTTAAGATTCTGCGCA 57.948 42.857 10.98 10.98 0.00 6.09
500 501 3.002791 TGGTTCTTAAGATTCTGCGCAG 58.997 45.455 31.53 31.53 0.00 5.18
517 518 4.102404 CGCAGCGTTGTACACAATATAG 57.898 45.455 6.65 0.00 38.24 1.31
518 519 3.601586 CGCAGCGTTGTACACAATATAGC 60.602 47.826 6.65 3.09 38.24 2.97
519 520 3.555956 GCAGCGTTGTACACAATATAGCT 59.444 43.478 0.00 0.00 38.24 3.32
520 521 4.318121 GCAGCGTTGTACACAATATAGCTC 60.318 45.833 0.00 6.51 38.24 4.09
521 522 4.042398 AGCGTTGTACACAATATAGCTCG 58.958 43.478 0.00 0.00 38.24 5.03
522 523 3.361724 GCGTTGTACACAATATAGCTCGC 60.362 47.826 0.00 7.81 38.24 5.03
523 524 3.181774 CGTTGTACACAATATAGCTCGCC 59.818 47.826 0.00 0.00 38.24 5.54
524 525 4.116961 GTTGTACACAATATAGCTCGCCA 58.883 43.478 0.00 0.00 38.24 5.69
525 526 3.977427 TGTACACAATATAGCTCGCCAG 58.023 45.455 0.00 0.00 0.00 4.85
526 527 3.383505 TGTACACAATATAGCTCGCCAGT 59.616 43.478 0.00 0.00 0.00 4.00
527 528 3.543680 ACACAATATAGCTCGCCAGTT 57.456 42.857 0.00 0.00 0.00 3.16
528 529 3.458189 ACACAATATAGCTCGCCAGTTC 58.542 45.455 0.00 0.00 0.00 3.01
529 530 3.118775 ACACAATATAGCTCGCCAGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
530 531 3.871006 CACAATATAGCTCGCCAGTTCAA 59.129 43.478 0.00 0.00 0.00 2.69
531 532 3.871594 ACAATATAGCTCGCCAGTTCAAC 59.128 43.478 0.00 0.00 0.00 3.18
532 533 4.122776 CAATATAGCTCGCCAGTTCAACT 58.877 43.478 0.00 0.00 0.00 3.16
533 534 2.015736 ATAGCTCGCCAGTTCAACTG 57.984 50.000 10.91 10.91 45.53 3.16
565 566 3.793144 GCTTGAAGCACCCGAGCG 61.793 66.667 13.09 0.00 41.89 5.03
566 567 3.793144 CTTGAAGCACCCGAGCGC 61.793 66.667 0.00 0.00 40.15 5.92
567 568 4.314440 TTGAAGCACCCGAGCGCT 62.314 61.111 11.27 11.27 41.20 5.92
583 584 4.025401 CTGCCGAACGCGCCTTTT 62.025 61.111 5.73 0.00 42.08 2.27
584 585 3.536498 CTGCCGAACGCGCCTTTTT 62.536 57.895 5.73 0.00 42.08 1.94
603 604 4.576106 TTTTTCAAGCGCAACAGTTTTC 57.424 36.364 11.47 0.00 0.00 2.29
604 605 2.202295 TTCAAGCGCAACAGTTTTCC 57.798 45.000 11.47 0.00 0.00 3.13
605 606 0.028770 TCAAGCGCAACAGTTTTCCG 59.971 50.000 11.47 0.00 0.00 4.30
606 607 1.299089 AAGCGCAACAGTTTTCCGC 60.299 52.632 11.47 12.52 44.47 5.54
607 608 2.331451 GCGCAACAGTTTTCCGCT 59.669 55.556 0.30 0.00 41.28 5.52
608 609 1.725973 GCGCAACAGTTTTCCGCTC 60.726 57.895 0.30 0.00 41.28 5.03
609 610 1.941812 CGCAACAGTTTTCCGCTCT 59.058 52.632 0.00 0.00 0.00 4.09
610 611 0.384725 CGCAACAGTTTTCCGCTCTG 60.385 55.000 0.00 0.00 35.60 3.35
611 612 0.663153 GCAACAGTTTTCCGCTCTGT 59.337 50.000 0.00 0.00 43.04 3.41
612 613 1.871039 GCAACAGTTTTCCGCTCTGTA 59.129 47.619 0.00 0.00 40.81 2.74
613 614 2.349532 GCAACAGTTTTCCGCTCTGTAC 60.350 50.000 0.00 0.00 40.81 2.90
614 615 3.131396 CAACAGTTTTCCGCTCTGTACT 58.869 45.455 0.00 0.00 40.81 2.73
615 616 2.755650 ACAGTTTTCCGCTCTGTACTG 58.244 47.619 0.00 0.00 40.06 2.74
616 617 2.102588 ACAGTTTTCCGCTCTGTACTGT 59.897 45.455 0.00 0.00 40.80 3.55
617 618 3.131396 CAGTTTTCCGCTCTGTACTGTT 58.869 45.455 0.00 0.00 0.00 3.16
618 619 3.184581 CAGTTTTCCGCTCTGTACTGTTC 59.815 47.826 0.00 0.00 0.00 3.18
619 620 2.060326 TTTCCGCTCTGTACTGTTCG 57.940 50.000 0.00 2.33 0.00 3.95
620 621 0.388134 TTCCGCTCTGTACTGTTCGC 60.388 55.000 0.00 0.00 0.00 4.70
621 622 1.213013 CCGCTCTGTACTGTTCGCT 59.787 57.895 0.00 0.00 0.00 4.93
622 623 0.450583 CCGCTCTGTACTGTTCGCTA 59.549 55.000 0.00 0.00 0.00 4.26
623 624 1.532090 CCGCTCTGTACTGTTCGCTAG 60.532 57.143 0.00 0.00 0.00 3.42
624 625 1.551145 GCTCTGTACTGTTCGCTAGC 58.449 55.000 4.06 4.06 0.00 3.42
625 626 1.799548 GCTCTGTACTGTTCGCTAGCC 60.800 57.143 9.66 0.00 0.00 3.93
626 627 1.472878 CTCTGTACTGTTCGCTAGCCA 59.527 52.381 9.66 0.02 0.00 4.75
627 628 1.201647 TCTGTACTGTTCGCTAGCCAC 59.798 52.381 9.66 6.95 0.00 5.01
628 629 0.963225 TGTACTGTTCGCTAGCCACA 59.037 50.000 9.66 11.45 0.00 4.17
629 630 1.548719 TGTACTGTTCGCTAGCCACAT 59.451 47.619 9.66 5.71 0.00 3.21
630 631 1.927174 GTACTGTTCGCTAGCCACATG 59.073 52.381 9.66 8.84 0.00 3.21
631 632 0.391661 ACTGTTCGCTAGCCACATGG 60.392 55.000 9.66 4.50 38.53 3.66
632 633 1.078497 TGTTCGCTAGCCACATGGG 60.078 57.895 9.66 0.00 40.85 4.00
643 644 4.740822 ACATGGGCCGGCCAAGTC 62.741 66.667 44.46 28.47 37.98 3.01
644 645 4.738998 CATGGGCCGGCCAAGTCA 62.739 66.667 44.46 33.02 37.98 3.41
645 646 4.431131 ATGGGCCGGCCAAGTCAG 62.431 66.667 44.46 0.00 37.98 3.51
648 649 4.344865 GGCCGGCCAAGTCAGGAA 62.345 66.667 40.73 0.00 35.81 3.36
649 650 2.282180 GCCGGCCAAGTCAGGAAA 60.282 61.111 18.11 0.00 0.00 3.13
650 651 2.335712 GCCGGCCAAGTCAGGAAAG 61.336 63.158 18.11 0.00 0.00 2.62
651 652 2.335712 CCGGCCAAGTCAGGAAAGC 61.336 63.158 2.24 0.00 0.00 3.51
652 653 2.335712 CGGCCAAGTCAGGAAAGCC 61.336 63.158 2.24 0.00 37.03 4.35
653 654 1.228552 GGCCAAGTCAGGAAAGCCA 60.229 57.895 0.00 0.00 40.20 4.75
654 655 1.527433 GGCCAAGTCAGGAAAGCCAC 61.527 60.000 0.00 0.00 40.20 5.01
655 656 1.527433 GCCAAGTCAGGAAAGCCACC 61.527 60.000 0.00 0.00 36.29 4.61
656 657 0.111253 CCAAGTCAGGAAAGCCACCT 59.889 55.000 0.00 0.00 38.40 4.00
660 661 3.359002 CAGGAAAGCCACCTGTGC 58.641 61.111 11.67 0.00 46.71 4.57
661 662 2.281761 AGGAAAGCCACCTGTGCG 60.282 61.111 0.00 0.00 36.30 5.34
662 663 2.594592 GGAAAGCCACCTGTGCGT 60.595 61.111 0.00 0.00 0.00 5.24
663 664 2.639286 GAAAGCCACCTGTGCGTG 59.361 61.111 0.00 0.00 0.00 5.34
664 665 3.542629 GAAAGCCACCTGTGCGTGC 62.543 63.158 0.00 0.00 32.10 5.34
697 698 3.403277 GCACAGAGCGGCACATAG 58.597 61.111 1.45 0.00 0.00 2.23
698 699 2.176273 GCACAGAGCGGCACATAGG 61.176 63.158 1.45 0.00 0.00 2.57
699 700 1.517361 CACAGAGCGGCACATAGGA 59.483 57.895 1.45 0.00 0.00 2.94
700 701 0.105593 CACAGAGCGGCACATAGGAT 59.894 55.000 1.45 0.00 0.00 3.24
701 702 0.390860 ACAGAGCGGCACATAGGATC 59.609 55.000 1.45 0.00 0.00 3.36
702 703 0.678395 CAGAGCGGCACATAGGATCT 59.322 55.000 1.45 0.00 0.00 2.75
703 704 0.965439 AGAGCGGCACATAGGATCTC 59.035 55.000 1.45 0.00 0.00 2.75
704 705 0.037790 GAGCGGCACATAGGATCTCC 60.038 60.000 1.45 0.00 0.00 3.71
736 737 3.564027 GCGCCGTCGGATGGAAAG 61.564 66.667 20.37 10.77 35.95 2.62
825 826 1.398041 CGAGGCAAATCAATCTGCGAA 59.602 47.619 0.00 0.00 39.55 4.70
827 828 2.421424 GAGGCAAATCAATCTGCGAAGT 59.579 45.455 0.00 0.00 39.55 3.01
838 839 0.528684 CTGCGAAGTCGATCCCCTTC 60.529 60.000 4.59 8.35 43.02 3.46
866 867 1.468520 GGCAAACGAATCTGCTAGCAA 59.531 47.619 19.86 10.28 38.65 3.91
925 926 1.081376 CGTCGAAGGCTCGTCTTGT 60.081 57.895 0.00 0.00 45.62 3.16
958 967 2.544685 CGATTCAGTTCGGCTTCAGAT 58.455 47.619 0.00 0.00 35.50 2.90
995 1004 2.662156 GACGGCGTACAGAAAGAAAGAG 59.338 50.000 14.74 0.00 0.00 2.85
996 1005 2.295349 ACGGCGTACAGAAAGAAAGAGA 59.705 45.455 12.58 0.00 0.00 3.10
997 1006 2.917971 CGGCGTACAGAAAGAAAGAGAG 59.082 50.000 0.00 0.00 0.00 3.20
1124 1133 1.152312 ACTTGGAGGAGGACCACGT 60.152 57.895 0.00 0.00 37.13 4.49
1126 1135 0.320771 CTTGGAGGAGGACCACGTTG 60.321 60.000 0.00 0.00 37.13 4.10
1127 1136 2.047179 GGAGGAGGACCACGTTGC 60.047 66.667 0.00 0.00 38.94 4.17
1218 1227 2.123468 AACGGGCCTTGGCACTTT 60.123 55.556 12.41 6.05 0.00 2.66
1279 1288 4.028490 CCTGGCGCTACACCCCAA 62.028 66.667 7.64 0.00 0.00 4.12
1389 1405 2.225727 CCTCTACAAGTTTGGTTTCCGC 59.774 50.000 0.00 0.00 0.00 5.54
1406 1422 4.454948 CAAGTTCCACGTGCTCCA 57.545 55.556 10.91 0.00 0.00 3.86
1413 1429 3.314331 CACGTGCTCCACCCTCCT 61.314 66.667 0.82 0.00 0.00 3.69
1437 1453 1.664965 ACGAACCGAAGTGCTCTGC 60.665 57.895 0.00 0.00 0.00 4.26
1852 1877 4.549516 GCGCGTCCCTCGTCTACC 62.550 72.222 8.43 0.00 42.13 3.18
1864 1889 1.831726 GTCTACCTAGGGACGGGGC 60.832 68.421 14.81 0.00 0.00 5.80
1897 1922 3.386237 GCCTCGTGGAGTGCCTCT 61.386 66.667 7.92 0.00 34.57 3.69
1898 1923 2.888863 CCTCGTGGAGTGCCTCTC 59.111 66.667 0.00 0.61 42.07 3.20
1902 1927 4.803426 GTGGAGTGCCTCTCGCGG 62.803 72.222 6.13 0.00 43.60 6.46
1927 1952 2.590007 GGCGCCATCAGCTTCGAT 60.590 61.111 24.80 0.00 40.39 3.59
1940 1965 3.124297 CAGCTTCGATTGACAACCTTCTC 59.876 47.826 0.00 0.00 0.00 2.87
1950 1975 1.203570 ACAACCTTCTCCCCCAGGTAT 60.204 52.381 0.00 0.00 43.05 2.73
1955 1980 1.765314 CTTCTCCCCCAGGTATCACAG 59.235 57.143 0.00 0.00 0.00 3.66
1987 2012 1.448893 GGGATCAGCAAACGCCGTA 60.449 57.895 0.00 0.00 0.00 4.02
2013 2038 3.219281 TCAGTCCTTTAAGTTGCCCAAC 58.781 45.455 3.01 3.01 41.45 3.77
2017 2042 1.000717 CCTTTAAGTTGCCCAACACGG 60.001 52.381 13.08 2.89 43.47 4.94
2098 2123 3.552684 CGTTGGTCATTGCATTCTGGTTT 60.553 43.478 0.00 0.00 0.00 3.27
2101 2126 5.389859 TGGTCATTGCATTCTGGTTTTAG 57.610 39.130 0.00 0.00 0.00 1.85
2110 2135 4.700213 GCATTCTGGTTTTAGGAGCAAGTA 59.300 41.667 0.00 0.00 0.00 2.24
2111 2136 5.358160 GCATTCTGGTTTTAGGAGCAAGTAT 59.642 40.000 0.00 0.00 0.00 2.12
2112 2137 6.542370 GCATTCTGGTTTTAGGAGCAAGTATA 59.458 38.462 0.00 0.00 0.00 1.47
2145 2170 9.836864 AGATGATGTAAGCATTCAAGTAATGTA 57.163 29.630 0.00 0.00 42.55 2.29
2151 2176 9.352784 TGTAAGCATTCAAGTAATGTATTTTGC 57.647 29.630 0.00 0.00 45.78 3.68
2152 2177 9.573133 GTAAGCATTCAAGTAATGTATTTTGCT 57.427 29.630 0.00 0.00 45.78 3.91
2169 2194 6.391227 TTTTGCTTGAGTTTTAAGAGGAGG 57.609 37.500 0.00 0.00 0.00 4.30
2170 2195 4.021102 TGCTTGAGTTTTAAGAGGAGGG 57.979 45.455 0.00 0.00 0.00 4.30
2177 2202 6.026186 TGAGTTTTAAGAGGAGGGAGAAGAT 58.974 40.000 0.00 0.00 0.00 2.40
2187 2212 4.169068 AGGAGGGAGAAGATAAGCAGACTA 59.831 45.833 0.00 0.00 0.00 2.59
2200 2225 9.757227 AGATAAGCAGACTATAAGTTCATTGTC 57.243 33.333 0.00 0.00 32.81 3.18
2224 2249 3.063180 CGCAGGCTTCAAGAAACTCTATG 59.937 47.826 0.00 0.00 0.00 2.23
2236 2261 8.756927 TCAAGAAACTCTATGAGATTGTGAGAT 58.243 33.333 1.25 0.00 33.32 2.75
2259 2284 8.806146 AGATGGGTCATATAATAATTGTTTGCC 58.194 33.333 0.00 0.00 0.00 4.52
2311 2336 3.606777 CGTTCTACGTGATACAGTTGGTG 59.393 47.826 0.00 0.00 36.74 4.17
2313 2338 2.094390 TCTACGTGATACAGTTGGTGGC 60.094 50.000 0.00 0.00 0.00 5.01
2315 2340 1.078709 CGTGATACAGTTGGTGGCAG 58.921 55.000 0.00 0.00 0.00 4.85
2319 2344 2.158682 TGATACAGTTGGTGGCAGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
2320 2345 1.674359 TACAGTTGGTGGCAGTGTTG 58.326 50.000 0.00 0.00 0.00 3.33
2323 2348 0.034574 AGTTGGTGGCAGTGTTGACA 60.035 50.000 0.00 0.00 41.02 3.58
2324 2349 1.032014 GTTGGTGGCAGTGTTGACAT 58.968 50.000 0.00 0.00 46.01 3.06
2325 2350 1.031235 TTGGTGGCAGTGTTGACATG 58.969 50.000 0.00 0.00 46.01 3.21
2326 2351 0.822944 TGGTGGCAGTGTTGACATGG 60.823 55.000 0.00 0.00 46.01 3.66
2327 2352 1.286880 GTGGCAGTGTTGACATGGC 59.713 57.895 0.00 0.00 46.01 4.40
2328 2353 1.902918 TGGCAGTGTTGACATGGCC 60.903 57.895 17.09 17.09 37.44 5.36
2329 2354 2.562912 GCAGTGTTGACATGGCCG 59.437 61.111 0.00 0.00 0.00 6.13
2330 2355 2.562912 CAGTGTTGACATGGCCGC 59.437 61.111 0.00 0.00 0.00 6.53
2332 2357 1.672356 AGTGTTGACATGGCCGCTC 60.672 57.895 0.00 0.00 0.00 5.03
2333 2358 1.672356 GTGTTGACATGGCCGCTCT 60.672 57.895 0.00 0.00 0.00 4.09
2335 2360 2.046023 TTGACATGGCCGCTCTGG 60.046 61.111 0.00 0.00 42.50 3.86
2336 2361 2.894257 TTGACATGGCCGCTCTGGT 61.894 57.895 0.00 0.00 41.21 4.00
2339 2364 1.926511 GACATGGCCGCTCTGGTTTG 61.927 60.000 0.00 0.00 41.21 2.93
2340 2365 2.361610 ATGGCCGCTCTGGTTTGG 60.362 61.111 0.00 0.00 41.21 3.28
2341 2366 2.905996 ATGGCCGCTCTGGTTTGGA 61.906 57.895 0.00 0.00 41.21 3.53
2342 2367 2.747855 GGCCGCTCTGGTTTGGAG 60.748 66.667 0.00 0.00 41.21 3.86
2347 2372 2.328099 GCTCTGGTTTGGAGCGTGG 61.328 63.158 0.00 0.00 45.01 4.94
2348 2373 1.071471 CTCTGGTTTGGAGCGTGGT 59.929 57.895 0.00 0.00 0.00 4.16
2350 2375 2.203280 TGGTTTGGAGCGTGGTGG 60.203 61.111 0.00 0.00 0.00 4.61
2351 2376 2.203294 GGTTTGGAGCGTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
2352 2377 1.071814 GGTTTGGAGCGTGGTGGTA 59.928 57.895 0.00 0.00 0.00 3.25
2353 2378 0.953960 GGTTTGGAGCGTGGTGGTAG 60.954 60.000 0.00 0.00 0.00 3.18
2354 2379 1.302192 TTTGGAGCGTGGTGGTAGC 60.302 57.895 0.00 0.00 0.00 3.58
2355 2380 1.764571 TTTGGAGCGTGGTGGTAGCT 61.765 55.000 0.00 0.00 44.80 3.32
2356 2381 1.764571 TTGGAGCGTGGTGGTAGCTT 61.765 55.000 0.00 0.00 41.84 3.74
2358 2383 0.248289 GGAGCGTGGTGGTAGCTTTA 59.752 55.000 0.00 0.00 41.84 1.85
2359 2384 1.134491 GGAGCGTGGTGGTAGCTTTAT 60.134 52.381 0.00 0.00 41.84 1.40
2360 2385 1.933853 GAGCGTGGTGGTAGCTTTATG 59.066 52.381 0.00 0.00 41.84 1.90
2361 2386 1.278127 AGCGTGGTGGTAGCTTTATGT 59.722 47.619 0.00 0.00 38.13 2.29
2363 2388 2.933492 GCGTGGTGGTAGCTTTATGTCA 60.933 50.000 0.00 0.00 0.00 3.58
2364 2389 3.531538 CGTGGTGGTAGCTTTATGTCAT 58.468 45.455 0.00 0.00 0.00 3.06
2365 2390 3.938963 CGTGGTGGTAGCTTTATGTCATT 59.061 43.478 0.00 0.00 0.00 2.57
2366 2391 4.034048 CGTGGTGGTAGCTTTATGTCATTC 59.966 45.833 0.00 0.00 0.00 2.67
2367 2392 5.186198 GTGGTGGTAGCTTTATGTCATTCT 58.814 41.667 0.00 0.00 0.00 2.40
2368 2393 5.294552 GTGGTGGTAGCTTTATGTCATTCTC 59.705 44.000 0.00 0.00 0.00 2.87
2369 2394 5.045942 TGGTGGTAGCTTTATGTCATTCTCA 60.046 40.000 0.00 0.00 0.00 3.27
2370 2395 5.880332 GGTGGTAGCTTTATGTCATTCTCAA 59.120 40.000 0.00 0.00 0.00 3.02
2371 2396 6.183360 GGTGGTAGCTTTATGTCATTCTCAAC 60.183 42.308 0.00 0.00 0.00 3.18
2372 2397 6.371548 GTGGTAGCTTTATGTCATTCTCAACA 59.628 38.462 0.00 0.00 0.00 3.33
2373 2398 6.595326 TGGTAGCTTTATGTCATTCTCAACAG 59.405 38.462 0.00 0.00 0.00 3.16
2374 2399 6.818644 GGTAGCTTTATGTCATTCTCAACAGA 59.181 38.462 0.00 0.00 0.00 3.41
2384 2409 2.133281 TCTCAACAGAATGGCCATGG 57.867 50.000 21.63 14.66 43.62 3.66
2385 2410 1.108776 CTCAACAGAATGGCCATGGG 58.891 55.000 21.63 14.28 43.62 4.00
2396 2421 4.770540 CCATGGGCATCAGGTTGT 57.229 55.556 2.85 0.00 0.00 3.32
2397 2422 2.195389 CCATGGGCATCAGGTTGTG 58.805 57.895 2.85 0.00 0.00 3.33
2398 2423 1.324740 CCATGGGCATCAGGTTGTGG 61.325 60.000 2.85 0.00 0.00 4.17
2400 2425 0.632835 ATGGGCATCAGGTTGTGGAT 59.367 50.000 0.00 0.00 0.00 3.41
2402 2427 1.039233 GGGCATCAGGTTGTGGATGG 61.039 60.000 0.00 0.00 40.91 3.51
2405 2430 1.843368 CATCAGGTTGTGGATGGCTT 58.157 50.000 0.00 0.00 37.77 4.35
2406 2431 1.747355 CATCAGGTTGTGGATGGCTTC 59.253 52.381 0.00 0.00 37.77 3.86
2407 2432 0.321564 TCAGGTTGTGGATGGCTTCG 60.322 55.000 0.00 0.00 0.00 3.79
2412 2437 2.045926 GTGGATGGCTTCGGCAGT 60.046 61.111 0.00 0.00 42.43 4.40
2413 2438 2.046023 TGGATGGCTTCGGCAGTG 60.046 61.111 0.00 0.00 42.43 3.66
2415 2440 2.109126 GGATGGCTTCGGCAGTGAC 61.109 63.158 0.00 0.00 42.43 3.67
2416 2441 1.078848 GATGGCTTCGGCAGTGACT 60.079 57.895 0.00 0.00 42.43 3.41
2417 2442 1.078848 ATGGCTTCGGCAGTGACTC 60.079 57.895 0.00 0.00 42.43 3.36
2418 2443 2.811317 GGCTTCGGCAGTGACTCG 60.811 66.667 0.00 0.00 43.96 4.18
2419 2444 2.811317 GCTTCGGCAGTGACTCGG 60.811 66.667 0.00 0.00 41.33 4.63
2420 2445 2.651361 CTTCGGCAGTGACTCGGT 59.349 61.111 0.00 0.00 0.00 4.69
2424 2449 1.300620 CGGCAGTGACTCGGTTGAA 60.301 57.895 0.00 0.00 0.00 2.69
2425 2450 0.670546 CGGCAGTGACTCGGTTGAAT 60.671 55.000 0.00 0.00 0.00 2.57
2426 2451 0.798776 GGCAGTGACTCGGTTGAATG 59.201 55.000 0.00 0.00 0.00 2.67
2428 2453 1.728971 GCAGTGACTCGGTTGAATGAG 59.271 52.381 0.00 0.00 38.21 2.90
2490 2721 2.084546 GCAATCGGTTAGTGCTCCTTT 58.915 47.619 0.00 0.00 45.64 3.11
2504 2735 4.074970 TGCTCCTTTCCTTCATCTGTTTC 58.925 43.478 0.00 0.00 0.00 2.78
2515 2746 5.428496 TTCATCTGTTTCTGCTTCTGTTG 57.572 39.130 0.00 0.00 0.00 3.33
2535 2777 9.817809 TCTGTTGGTTAGATCATGTTATAAGAC 57.182 33.333 0.00 0.00 0.00 3.01
2566 2808 2.301870 AGTGCCGATTTAACTGAGTCCA 59.698 45.455 0.00 0.00 0.00 4.02
2567 2809 3.071479 GTGCCGATTTAACTGAGTCCAA 58.929 45.455 0.00 0.00 0.00 3.53
2596 3293 7.757097 TTCTCAAATAAGAACTCGCATAGTC 57.243 36.000 0.00 0.00 37.50 2.59
2623 3320 3.264193 TGTATGACCAGAACATTCAGCCT 59.736 43.478 0.00 0.00 0.00 4.58
2652 3352 1.557099 ACTGGATCTGGCGTCTTACA 58.443 50.000 0.00 0.00 0.00 2.41
2656 3356 2.271800 GGATCTGGCGTCTTACAGTTG 58.728 52.381 0.00 0.00 36.17 3.16
2661 3361 1.134340 TGGCGTCTTACAGTTGGTTGT 60.134 47.619 0.00 0.00 35.09 3.32
2662 3362 2.102757 TGGCGTCTTACAGTTGGTTGTA 59.897 45.455 0.00 0.00 32.56 2.41
2663 3363 2.735134 GGCGTCTTACAGTTGGTTGTAG 59.265 50.000 0.00 0.00 35.17 2.74
2664 3364 3.553508 GGCGTCTTACAGTTGGTTGTAGA 60.554 47.826 0.00 0.00 35.17 2.59
2665 3365 3.427863 GCGTCTTACAGTTGGTTGTAGAC 59.572 47.826 0.00 0.00 35.17 2.59
2666 3366 4.795308 GCGTCTTACAGTTGGTTGTAGACT 60.795 45.833 0.00 0.00 35.17 3.24
2667 3367 5.287226 CGTCTTACAGTTGGTTGTAGACTT 58.713 41.667 0.00 0.00 35.17 3.01
2668 3368 5.175126 CGTCTTACAGTTGGTTGTAGACTTG 59.825 44.000 0.00 0.00 35.17 3.16
2669 3369 6.047231 GTCTTACAGTTGGTTGTAGACTTGT 58.953 40.000 0.00 0.00 35.17 3.16
2670 3370 7.205297 GTCTTACAGTTGGTTGTAGACTTGTA 58.795 38.462 0.00 0.00 35.17 2.41
2673 3373 5.985911 ACAGTTGGTTGTAGACTTGTAGTT 58.014 37.500 0.00 0.00 0.00 2.24
2696 3396 0.039256 GTTTCTTTGCATCGCCAGCA 60.039 50.000 0.00 0.00 40.85 4.41
2703 3403 1.227645 GCATCGCCAGCATCCTGTA 60.228 57.895 0.00 0.00 37.38 2.74
2799 3531 5.643379 TGATTGCTTGAACTGATTTACCC 57.357 39.130 0.00 0.00 0.00 3.69
2800 3532 5.324409 TGATTGCTTGAACTGATTTACCCT 58.676 37.500 0.00 0.00 0.00 4.34
2801 3533 6.480763 TGATTGCTTGAACTGATTTACCCTA 58.519 36.000 0.00 0.00 0.00 3.53
2802 3534 6.599244 TGATTGCTTGAACTGATTTACCCTAG 59.401 38.462 0.00 0.00 0.00 3.02
2803 3535 5.499004 TGCTTGAACTGATTTACCCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
2804 3536 5.245531 TGCTTGAACTGATTTACCCTAGTG 58.754 41.667 0.00 0.00 0.00 2.74
2805 3537 5.221843 TGCTTGAACTGATTTACCCTAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
2806 3538 5.122396 GCTTGAACTGATTTACCCTAGTGTG 59.878 44.000 0.00 0.00 0.00 3.82
2807 3539 5.160607 TGAACTGATTTACCCTAGTGTGG 57.839 43.478 0.00 0.00 0.00 4.17
2808 3540 3.629142 ACTGATTTACCCTAGTGTGGC 57.371 47.619 0.00 0.00 0.00 5.01
2844 3578 1.066908 CTTGGGTTGCAGAAGCGAAAA 59.933 47.619 0.00 0.00 46.23 2.29
2845 3579 0.383949 TGGGTTGCAGAAGCGAAAAC 59.616 50.000 0.00 0.00 46.23 2.43
2846 3580 0.383949 GGGTTGCAGAAGCGAAAACA 59.616 50.000 0.00 0.00 46.23 2.83
2847 3581 1.000274 GGGTTGCAGAAGCGAAAACAT 60.000 47.619 0.00 0.00 46.23 2.71
2848 3582 2.227865 GGGTTGCAGAAGCGAAAACATA 59.772 45.455 0.00 0.00 46.23 2.29
2849 3583 3.119495 GGGTTGCAGAAGCGAAAACATAT 60.119 43.478 0.00 0.00 46.23 1.78
2853 3587 6.584563 GGTTGCAGAAGCGAAAACATATAAAA 59.415 34.615 0.00 0.00 46.23 1.52
2855 3589 7.739022 TGCAGAAGCGAAAACATATAAAATG 57.261 32.000 0.00 0.00 46.23 2.32
2864 3598 7.043391 GCGAAAACATATAAAATGGGAAAGAGC 60.043 37.037 0.00 0.00 0.00 4.09
2866 3600 9.087424 GAAAACATATAAAATGGGAAAGAGCAC 57.913 33.333 0.00 0.00 0.00 4.40
2901 3635 6.615088 ACACTGACATGTTGATTATTTCAGC 58.385 36.000 0.00 0.00 36.36 4.26
2908 3642 7.478322 ACATGTTGATTATTTCAGCAGTCATC 58.522 34.615 0.00 0.00 46.88 2.92
2978 3713 7.439655 GGACTTATGATCTGAACTACATTGACC 59.560 40.741 0.00 0.00 0.00 4.02
2981 3716 9.388506 CTTATGATCTGAACTACATTGACCTTT 57.611 33.333 0.00 0.00 0.00 3.11
2999 3734 1.666054 TTACCCACAACGTCCACAAC 58.334 50.000 0.00 0.00 0.00 3.32
3018 3753 6.464222 CACAACCTGGACTAAGAAATACTGA 58.536 40.000 0.00 0.00 0.00 3.41
3019 3754 6.591834 CACAACCTGGACTAAGAAATACTGAG 59.408 42.308 0.00 0.00 33.39 3.35
3022 3757 5.780793 ACCTGGACTAAGAAATACTGAGTGT 59.219 40.000 0.00 0.00 40.20 3.55
3056 3791 6.676456 GCAGACTGCATCTTTATTCAATCGTT 60.676 38.462 22.62 0.00 44.26 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.884465 TGAACAAAATTTGAAAAACGAACATTT 57.116 22.222 13.19 0.00 0.00 2.32
14 15 9.540431 CTGAACAAAATTTGAAAAACGAACATT 57.460 25.926 13.19 0.00 0.00 2.71
15 16 8.174422 CCTGAACAAAATTTGAAAAACGAACAT 58.826 29.630 13.19 0.00 0.00 2.71
16 17 7.385205 TCCTGAACAAAATTTGAAAAACGAACA 59.615 29.630 13.19 0.00 0.00 3.18
17 18 7.686529 GTCCTGAACAAAATTTGAAAAACGAAC 59.313 33.333 13.19 0.00 0.00 3.95
18 19 7.600752 AGTCCTGAACAAAATTTGAAAAACGAA 59.399 29.630 13.19 0.00 0.00 3.85
19 20 7.093992 AGTCCTGAACAAAATTTGAAAAACGA 58.906 30.769 13.19 0.00 0.00 3.85
20 21 7.289587 AGTCCTGAACAAAATTTGAAAAACG 57.710 32.000 13.19 0.00 0.00 3.60
50 51 8.806429 AAAAAGATTTGAACAGGGACATTTTT 57.194 26.923 0.00 0.00 0.00 1.94
51 52 8.267183 AGAAAAAGATTTGAACAGGGACATTTT 58.733 29.630 0.00 0.00 0.00 1.82
52 53 7.795047 AGAAAAAGATTTGAACAGGGACATTT 58.205 30.769 0.00 0.00 0.00 2.32
53 54 7.069826 TGAGAAAAAGATTTGAACAGGGACATT 59.930 33.333 0.00 0.00 0.00 2.71
54 55 6.550854 TGAGAAAAAGATTTGAACAGGGACAT 59.449 34.615 0.00 0.00 0.00 3.06
55 56 5.890985 TGAGAAAAAGATTTGAACAGGGACA 59.109 36.000 0.00 0.00 0.00 4.02
56 57 6.391227 TGAGAAAAAGATTTGAACAGGGAC 57.609 37.500 0.00 0.00 0.00 4.46
57 58 7.416964 TTTGAGAAAAAGATTTGAACAGGGA 57.583 32.000 0.00 0.00 0.00 4.20
58 59 8.667076 AATTTGAGAAAAAGATTTGAACAGGG 57.333 30.769 0.00 0.00 0.00 4.45
106 107 8.953313 CCAGTATTTTAAACTCCCGAGTAAAAT 58.047 33.333 16.68 16.68 41.58 1.82
107 108 7.938490 ACCAGTATTTTAAACTCCCGAGTAAAA 59.062 33.333 7.60 7.60 41.58 1.52
108 109 7.452562 ACCAGTATTTTAAACTCCCGAGTAAA 58.547 34.615 0.00 0.00 41.58 2.01
109 110 7.008021 ACCAGTATTTTAAACTCCCGAGTAA 57.992 36.000 0.00 0.00 41.58 2.24
110 111 6.610075 ACCAGTATTTTAAACTCCCGAGTA 57.390 37.500 0.00 0.00 41.58 2.59
111 112 5.485620 GACCAGTATTTTAAACTCCCGAGT 58.514 41.667 0.00 0.00 44.94 4.18
112 113 4.565564 CGACCAGTATTTTAAACTCCCGAG 59.434 45.833 0.00 0.00 0.00 4.63
113 114 4.497300 CGACCAGTATTTTAAACTCCCGA 58.503 43.478 0.00 0.00 0.00 5.14
114 115 3.063045 GCGACCAGTATTTTAAACTCCCG 59.937 47.826 0.00 0.00 0.00 5.14
115 116 4.004982 TGCGACCAGTATTTTAAACTCCC 58.995 43.478 0.00 0.00 0.00 4.30
116 117 5.813080 ATGCGACCAGTATTTTAAACTCC 57.187 39.130 0.00 0.00 0.00 3.85
117 118 7.302524 TGAAATGCGACCAGTATTTTAAACTC 58.697 34.615 0.00 0.00 43.56 3.01
118 119 7.209471 TGAAATGCGACCAGTATTTTAAACT 57.791 32.000 0.00 0.00 43.56 2.66
119 120 9.730420 ATATGAAATGCGACCAGTATTTTAAAC 57.270 29.630 0.00 0.00 43.56 2.01
123 124 9.897744 CATTATATGAAATGCGACCAGTATTTT 57.102 29.630 0.00 0.00 43.56 1.82
124 125 9.066892 ACATTATATGAAATGCGACCAGTATTT 57.933 29.630 0.00 0.00 45.63 1.40
125 126 8.621532 ACATTATATGAAATGCGACCAGTATT 57.378 30.769 0.00 0.00 39.93 1.89
126 127 8.621532 AACATTATATGAAATGCGACCAGTAT 57.378 30.769 0.00 0.00 39.93 2.12
127 128 8.341903 CAAACATTATATGAAATGCGACCAGTA 58.658 33.333 0.00 0.00 39.93 2.74
128 129 6.942532 AACATTATATGAAATGCGACCAGT 57.057 33.333 0.00 0.00 39.93 4.00
129 130 7.166307 CACAAACATTATATGAAATGCGACCAG 59.834 37.037 0.00 0.00 39.93 4.00
130 131 6.971756 CACAAACATTATATGAAATGCGACCA 59.028 34.615 0.00 0.00 39.93 4.02
131 132 6.972328 ACACAAACATTATATGAAATGCGACC 59.028 34.615 0.00 0.00 39.93 4.79
132 133 7.969387 ACACAAACATTATATGAAATGCGAC 57.031 32.000 0.00 0.00 39.93 5.19
146 147 8.246871 CCCCAAAACAAAATTTACACAAACATT 58.753 29.630 0.00 0.00 0.00 2.71
147 148 7.394641 ACCCCAAAACAAAATTTACACAAACAT 59.605 29.630 0.00 0.00 0.00 2.71
148 149 6.715264 ACCCCAAAACAAAATTTACACAAACA 59.285 30.769 0.00 0.00 0.00 2.83
149 150 7.147143 ACCCCAAAACAAAATTTACACAAAC 57.853 32.000 0.00 0.00 0.00 2.93
150 151 7.761038 AACCCCAAAACAAAATTTACACAAA 57.239 28.000 0.00 0.00 0.00 2.83
151 152 7.761038 AAACCCCAAAACAAAATTTACACAA 57.239 28.000 0.00 0.00 0.00 3.33
152 153 8.857694 TTAAACCCCAAAACAAAATTTACACA 57.142 26.923 0.00 0.00 0.00 3.72
157 158 9.688091 ACAGTATTAAACCCCAAAACAAAATTT 57.312 25.926 0.00 0.00 0.00 1.82
158 159 9.688091 AACAGTATTAAACCCCAAAACAAAATT 57.312 25.926 0.00 0.00 0.00 1.82
159 160 9.332502 GAACAGTATTAAACCCCAAAACAAAAT 57.667 29.630 0.00 0.00 0.00 1.82
160 161 8.541234 AGAACAGTATTAAACCCCAAAACAAAA 58.459 29.630 0.00 0.00 0.00 2.44
161 162 8.080363 AGAACAGTATTAAACCCCAAAACAAA 57.920 30.769 0.00 0.00 0.00 2.83
162 163 7.663043 AGAACAGTATTAAACCCCAAAACAA 57.337 32.000 0.00 0.00 0.00 2.83
163 164 7.663043 AAGAACAGTATTAAACCCCAAAACA 57.337 32.000 0.00 0.00 0.00 2.83
204 205 9.434420 AGTCTTGAACAAAATTTGAAAACATCA 57.566 25.926 13.19 4.35 35.85 3.07
207 208 9.875675 CAAAGTCTTGAACAAAATTTGAAAACA 57.124 25.926 13.19 4.18 34.14 2.83
259 260 8.759641 CGTGAACATTTTTCATATTCCAAAACA 58.240 29.630 0.00 0.00 0.00 2.83
260 261 8.760569 ACGTGAACATTTTTCATATTCCAAAAC 58.239 29.630 0.00 0.00 0.00 2.43
261 262 8.879342 ACGTGAACATTTTTCATATTCCAAAA 57.121 26.923 0.00 0.00 0.00 2.44
262 263 8.879342 AACGTGAACATTTTTCATATTCCAAA 57.121 26.923 0.00 0.00 0.00 3.28
263 264 8.879342 AAACGTGAACATTTTTCATATTCCAA 57.121 26.923 0.00 0.00 0.00 3.53
264 265 8.879342 AAAACGTGAACATTTTTCATATTCCA 57.121 26.923 0.00 0.00 0.00 3.53
265 266 8.973378 TGAAAACGTGAACATTTTTCATATTCC 58.027 29.630 16.21 0.00 41.85 3.01
270 271 9.701355 GAAATTGAAAACGTGAACATTTTTCAT 57.299 25.926 18.67 10.55 44.55 2.57
271 272 8.171840 GGAAATTGAAAACGTGAACATTTTTCA 58.828 29.630 16.21 16.21 43.88 2.69
272 273 8.387354 AGGAAATTGAAAACGTGAACATTTTTC 58.613 29.630 13.08 13.08 38.94 2.29
273 274 8.174422 CAGGAAATTGAAAACGTGAACATTTTT 58.826 29.630 0.00 0.00 0.00 1.94
274 275 7.201600 CCAGGAAATTGAAAACGTGAACATTTT 60.202 33.333 0.00 0.00 0.00 1.82
275 276 6.257630 CCAGGAAATTGAAAACGTGAACATTT 59.742 34.615 0.00 0.00 0.00 2.32
276 277 5.752955 CCAGGAAATTGAAAACGTGAACATT 59.247 36.000 0.00 0.00 0.00 2.71
277 278 5.288804 CCAGGAAATTGAAAACGTGAACAT 58.711 37.500 0.00 0.00 0.00 2.71
278 279 4.440802 CCCAGGAAATTGAAAACGTGAACA 60.441 41.667 0.00 0.00 0.00 3.18
279 280 4.048504 CCCAGGAAATTGAAAACGTGAAC 58.951 43.478 0.00 0.00 0.00 3.18
280 281 3.068873 CCCCAGGAAATTGAAAACGTGAA 59.931 43.478 0.00 0.00 0.00 3.18
281 282 2.625790 CCCCAGGAAATTGAAAACGTGA 59.374 45.455 0.00 0.00 0.00 4.35
282 283 2.625790 TCCCCAGGAAATTGAAAACGTG 59.374 45.455 0.00 0.00 0.00 4.49
283 284 2.890945 CTCCCCAGGAAATTGAAAACGT 59.109 45.455 0.00 0.00 0.00 3.99
284 285 2.890945 ACTCCCCAGGAAATTGAAAACG 59.109 45.455 0.00 0.00 0.00 3.60
285 286 4.343814 TGAACTCCCCAGGAAATTGAAAAC 59.656 41.667 0.00 0.00 0.00 2.43
286 287 4.551671 TGAACTCCCCAGGAAATTGAAAA 58.448 39.130 0.00 0.00 0.00 2.29
287 288 4.191804 TGAACTCCCCAGGAAATTGAAA 57.808 40.909 0.00 0.00 0.00 2.69
288 289 3.893753 TGAACTCCCCAGGAAATTGAA 57.106 42.857 0.00 0.00 0.00 2.69
289 290 3.893753 TTGAACTCCCCAGGAAATTGA 57.106 42.857 0.00 0.00 0.00 2.57
290 291 4.953940 TTTTGAACTCCCCAGGAAATTG 57.046 40.909 0.00 0.00 0.00 2.32
313 314 8.664798 GCAAACAATTTTAGAAAACAGGAACTT 58.335 29.630 0.00 0.00 34.60 2.66
314 315 7.821846 TGCAAACAATTTTAGAAAACAGGAACT 59.178 29.630 0.00 0.00 43.88 3.01
315 316 7.969314 TGCAAACAATTTTAGAAAACAGGAAC 58.031 30.769 0.00 0.00 0.00 3.62
316 317 8.729805 ATGCAAACAATTTTAGAAAACAGGAA 57.270 26.923 0.00 0.00 0.00 3.36
317 318 8.729805 AATGCAAACAATTTTAGAAAACAGGA 57.270 26.923 0.00 0.00 0.00 3.86
318 319 9.786105 AAAATGCAAACAATTTTAGAAAACAGG 57.214 25.926 0.00 0.00 0.00 4.00
332 333 9.861138 CTCAAATATTTCGAAAAATGCAAACAA 57.139 25.926 15.66 0.00 35.84 2.83
333 334 9.039870 ACTCAAATATTTCGAAAAATGCAAACA 57.960 25.926 15.66 0.00 35.84 2.83
334 335 9.516091 GACTCAAATATTTCGAAAAATGCAAAC 57.484 29.630 15.66 0.00 35.84 2.93
335 336 9.474920 AGACTCAAATATTTCGAAAAATGCAAA 57.525 25.926 15.66 0.00 35.84 3.68
336 337 9.474920 AAGACTCAAATATTTCGAAAAATGCAA 57.525 25.926 15.66 0.00 35.84 4.08
337 338 9.474920 AAAGACTCAAATATTTCGAAAAATGCA 57.525 25.926 15.66 0.00 35.84 3.96
370 371 9.798885 CGAACACTTTTAAAAATTGTGAACAAA 57.201 25.926 19.81 0.00 39.55 2.83
371 372 7.952637 GCGAACACTTTTAAAAATTGTGAACAA 59.047 29.630 19.81 0.00 40.51 2.83
372 373 7.116376 TGCGAACACTTTTAAAAATTGTGAACA 59.884 29.630 19.81 12.79 33.41 3.18
373 374 7.449027 TGCGAACACTTTTAAAAATTGTGAAC 58.551 30.769 19.81 13.40 33.41 3.18
374 375 7.582435 TGCGAACACTTTTAAAAATTGTGAA 57.418 28.000 19.81 2.58 33.41 3.18
375 376 7.582435 TTGCGAACACTTTTAAAAATTGTGA 57.418 28.000 19.81 1.31 33.41 3.58
376 377 8.819152 AATTGCGAACACTTTTAAAAATTGTG 57.181 26.923 14.10 14.10 35.09 3.33
377 378 9.484326 GAAATTGCGAACACTTTTAAAAATTGT 57.516 25.926 1.66 5.68 29.63 2.71
378 379 9.483062 TGAAATTGCGAACACTTTTAAAAATTG 57.517 25.926 1.66 5.08 29.63 2.32
379 380 9.484326 GTGAAATTGCGAACACTTTTAAAAATT 57.516 25.926 1.66 0.00 29.63 1.82
380 381 8.660373 TGTGAAATTGCGAACACTTTTAAAAAT 58.340 25.926 1.66 0.00 29.63 1.82
381 382 8.018677 TGTGAAATTGCGAACACTTTTAAAAA 57.981 26.923 1.66 0.00 29.63 1.94
382 383 7.582435 TGTGAAATTGCGAACACTTTTAAAA 57.418 28.000 0.00 0.00 29.63 1.52
383 384 7.582435 TTGTGAAATTGCGAACACTTTTAAA 57.418 28.000 0.00 0.00 29.63 1.52
384 385 7.582435 TTTGTGAAATTGCGAACACTTTTAA 57.418 28.000 0.00 0.00 29.63 1.52
385 386 7.116376 TGTTTTGTGAAATTGCGAACACTTTTA 59.884 29.630 0.00 0.00 29.63 1.52
386 387 6.073548 TGTTTTGTGAAATTGCGAACACTTTT 60.074 30.769 0.00 0.00 29.63 2.27
387 388 5.406780 TGTTTTGTGAAATTGCGAACACTTT 59.593 32.000 0.00 0.00 31.92 2.66
388 389 4.926238 TGTTTTGTGAAATTGCGAACACTT 59.074 33.333 0.00 0.00 34.81 3.16
389 390 4.489810 TGTTTTGTGAAATTGCGAACACT 58.510 34.783 0.00 0.00 34.81 3.55
390 391 4.831741 TGTTTTGTGAAATTGCGAACAC 57.168 36.364 0.00 0.00 0.00 3.32
391 392 5.578336 TGAATGTTTTGTGAAATTGCGAACA 59.422 32.000 0.00 0.00 0.00 3.18
392 393 6.030379 TGAATGTTTTGTGAAATTGCGAAC 57.970 33.333 0.00 0.00 0.00 3.95
393 394 5.233902 CCTGAATGTTTTGTGAAATTGCGAA 59.766 36.000 0.00 0.00 0.00 4.70
394 395 4.744137 CCTGAATGTTTTGTGAAATTGCGA 59.256 37.500 0.00 0.00 0.00 5.10
395 396 4.507388 ACCTGAATGTTTTGTGAAATTGCG 59.493 37.500 0.00 0.00 0.00 4.85
396 397 5.989551 ACCTGAATGTTTTGTGAAATTGC 57.010 34.783 0.00 0.00 0.00 3.56
422 423 6.712241 TGAACGCAAAACAATTCTGAAAAA 57.288 29.167 0.00 0.00 0.00 1.94
423 424 6.712241 TTGAACGCAAAACAATTCTGAAAA 57.288 29.167 0.00 0.00 0.00 2.29
424 425 6.712241 TTTGAACGCAAAACAATTCTGAAA 57.288 29.167 0.00 0.00 40.82 2.69
425 426 6.712241 TTTTGAACGCAAAACAATTCTGAA 57.288 29.167 0.00 0.00 46.09 3.02
443 444 6.975772 AGATCCGAACGTTTTCAAAATTTTGA 59.024 30.769 26.01 26.01 44.78 2.69
444 445 7.056800 CAGATCCGAACGTTTTCAAAATTTTG 58.943 34.615 22.40 22.40 39.48 2.44
445 446 6.292114 GCAGATCCGAACGTTTTCAAAATTTT 60.292 34.615 0.46 0.00 0.00 1.82
446 447 5.174943 GCAGATCCGAACGTTTTCAAAATTT 59.825 36.000 0.46 0.00 0.00 1.82
447 448 4.679654 GCAGATCCGAACGTTTTCAAAATT 59.320 37.500 0.46 0.00 0.00 1.82
448 449 4.226761 GCAGATCCGAACGTTTTCAAAAT 58.773 39.130 0.46 0.00 0.00 1.82
449 450 3.065510 TGCAGATCCGAACGTTTTCAAAA 59.934 39.130 0.46 0.00 0.00 2.44
450 451 2.614520 TGCAGATCCGAACGTTTTCAAA 59.385 40.909 0.46 0.00 0.00 2.69
451 452 2.032377 GTGCAGATCCGAACGTTTTCAA 60.032 45.455 0.46 0.00 0.00 2.69
452 453 1.529438 GTGCAGATCCGAACGTTTTCA 59.471 47.619 0.46 0.00 0.00 2.69
453 454 1.798813 AGTGCAGATCCGAACGTTTTC 59.201 47.619 0.46 0.00 0.00 2.29
454 455 1.798813 GAGTGCAGATCCGAACGTTTT 59.201 47.619 0.46 0.00 0.00 2.43
455 456 1.429463 GAGTGCAGATCCGAACGTTT 58.571 50.000 0.46 0.00 0.00 3.60
456 457 0.732880 CGAGTGCAGATCCGAACGTT 60.733 55.000 0.00 0.00 0.00 3.99
457 458 1.154016 CGAGTGCAGATCCGAACGT 60.154 57.895 0.00 0.00 0.00 3.99
458 459 1.874019 CCGAGTGCAGATCCGAACG 60.874 63.158 0.00 0.00 0.00 3.95
459 460 0.389948 AACCGAGTGCAGATCCGAAC 60.390 55.000 0.00 0.00 0.00 3.95
460 461 0.320374 AAACCGAGTGCAGATCCGAA 59.680 50.000 0.00 0.00 0.00 4.30
461 462 0.389817 CAAACCGAGTGCAGATCCGA 60.390 55.000 0.00 0.00 0.00 4.55
462 463 1.361668 CCAAACCGAGTGCAGATCCG 61.362 60.000 0.00 0.00 0.00 4.18
463 464 0.321653 ACCAAACCGAGTGCAGATCC 60.322 55.000 0.00 0.00 0.00 3.36
464 465 1.464997 GAACCAAACCGAGTGCAGATC 59.535 52.381 0.00 0.00 0.00 2.75
465 466 1.072331 AGAACCAAACCGAGTGCAGAT 59.928 47.619 0.00 0.00 0.00 2.90
466 467 0.468226 AGAACCAAACCGAGTGCAGA 59.532 50.000 0.00 0.00 0.00 4.26
467 468 1.308998 AAGAACCAAACCGAGTGCAG 58.691 50.000 0.00 0.00 0.00 4.41
468 469 2.623878 TAAGAACCAAACCGAGTGCA 57.376 45.000 0.00 0.00 0.00 4.57
469 470 3.135994 TCTTAAGAACCAAACCGAGTGC 58.864 45.455 1.68 0.00 0.00 4.40
470 471 5.701290 AGAATCTTAAGAACCAAACCGAGTG 59.299 40.000 9.71 0.00 0.00 3.51
471 472 5.701290 CAGAATCTTAAGAACCAAACCGAGT 59.299 40.000 9.71 0.00 0.00 4.18
472 473 5.390991 GCAGAATCTTAAGAACCAAACCGAG 60.391 44.000 9.71 0.00 0.00 4.63
473 474 4.454504 GCAGAATCTTAAGAACCAAACCGA 59.545 41.667 9.71 0.00 0.00 4.69
474 475 4.669197 CGCAGAATCTTAAGAACCAAACCG 60.669 45.833 9.71 3.49 0.00 4.44
475 476 4.723248 CGCAGAATCTTAAGAACCAAACC 58.277 43.478 9.71 0.00 0.00 3.27
476 477 4.159120 GCGCAGAATCTTAAGAACCAAAC 58.841 43.478 9.71 0.00 0.00 2.93
477 478 3.818210 TGCGCAGAATCTTAAGAACCAAA 59.182 39.130 5.66 0.00 0.00 3.28
478 479 3.407698 TGCGCAGAATCTTAAGAACCAA 58.592 40.909 5.66 0.00 0.00 3.67
479 480 3.002791 CTGCGCAGAATCTTAAGAACCA 58.997 45.455 33.66 0.00 0.00 3.67
480 481 2.223135 GCTGCGCAGAATCTTAAGAACC 60.223 50.000 40.21 14.11 0.00 3.62
481 482 2.535732 CGCTGCGCAGAATCTTAAGAAC 60.536 50.000 40.21 16.59 0.00 3.01
482 483 1.660607 CGCTGCGCAGAATCTTAAGAA 59.339 47.619 40.21 0.00 0.00 2.52
483 484 1.280982 CGCTGCGCAGAATCTTAAGA 58.719 50.000 40.21 7.82 0.00 2.10
484 485 1.002366 ACGCTGCGCAGAATCTTAAG 58.998 50.000 40.21 19.98 0.00 1.85
485 486 1.128507 CAACGCTGCGCAGAATCTTAA 59.871 47.619 40.21 0.00 0.00 1.85
486 487 0.721154 CAACGCTGCGCAGAATCTTA 59.279 50.000 40.21 0.00 0.00 2.10
487 488 1.230635 ACAACGCTGCGCAGAATCTT 61.231 50.000 40.21 20.42 0.00 2.40
488 489 0.389817 TACAACGCTGCGCAGAATCT 60.390 50.000 40.21 17.96 0.00 2.40
489 490 0.247301 GTACAACGCTGCGCAGAATC 60.247 55.000 40.21 21.61 0.00 2.52
490 491 0.948623 TGTACAACGCTGCGCAGAAT 60.949 50.000 40.21 23.92 0.00 2.40
491 492 1.592939 TGTACAACGCTGCGCAGAA 60.593 52.632 40.21 14.49 0.00 3.02
492 493 2.028337 TGTACAACGCTGCGCAGA 59.972 55.556 40.21 16.27 0.00 4.26
493 494 2.100024 TTGTGTACAACGCTGCGCAG 62.100 55.000 32.83 32.83 0.00 5.18
494 495 1.502990 ATTGTGTACAACGCTGCGCA 61.503 50.000 23.51 10.98 38.86 6.09
495 496 0.440758 TATTGTGTACAACGCTGCGC 59.559 50.000 23.51 0.00 38.86 6.09
496 497 3.601586 GCTATATTGTGTACAACGCTGCG 60.602 47.826 21.91 21.91 38.86 5.18
497 498 3.555956 AGCTATATTGTGTACAACGCTGC 59.444 43.478 0.00 3.64 38.86 5.25
498 499 4.085568 CGAGCTATATTGTGTACAACGCTG 60.086 45.833 0.00 0.00 38.86 5.18
499 500 4.042398 CGAGCTATATTGTGTACAACGCT 58.958 43.478 0.00 6.09 38.86 5.07
500 501 3.361724 GCGAGCTATATTGTGTACAACGC 60.362 47.826 0.00 9.67 38.86 4.84
501 502 3.181774 GGCGAGCTATATTGTGTACAACG 59.818 47.826 0.00 0.00 38.86 4.10
502 503 4.116961 TGGCGAGCTATATTGTGTACAAC 58.883 43.478 0.00 0.00 38.86 3.32
503 504 4.142026 ACTGGCGAGCTATATTGTGTACAA 60.142 41.667 0.00 0.00 40.51 2.41
504 505 3.383505 ACTGGCGAGCTATATTGTGTACA 59.616 43.478 0.00 0.00 0.00 2.90
505 506 3.978687 ACTGGCGAGCTATATTGTGTAC 58.021 45.455 0.00 0.00 0.00 2.90
506 507 4.098807 TGAACTGGCGAGCTATATTGTGTA 59.901 41.667 0.00 0.00 0.00 2.90
507 508 3.118775 TGAACTGGCGAGCTATATTGTGT 60.119 43.478 0.00 0.00 0.00 3.72
508 509 3.457234 TGAACTGGCGAGCTATATTGTG 58.543 45.455 0.00 0.00 0.00 3.33
509 510 3.819564 TGAACTGGCGAGCTATATTGT 57.180 42.857 0.00 0.00 0.00 2.71
510 511 4.025396 CAGTTGAACTGGCGAGCTATATTG 60.025 45.833 17.27 0.00 42.35 1.90
511 512 4.122776 CAGTTGAACTGGCGAGCTATATT 58.877 43.478 17.27 0.00 42.35 1.28
512 513 3.722147 CAGTTGAACTGGCGAGCTATAT 58.278 45.455 17.27 0.00 42.35 0.86
513 514 3.165058 CAGTTGAACTGGCGAGCTATA 57.835 47.619 17.27 0.00 42.35 1.31
514 515 2.015736 CAGTTGAACTGGCGAGCTAT 57.984 50.000 17.27 0.00 42.35 2.97
515 516 3.514777 CAGTTGAACTGGCGAGCTA 57.485 52.632 17.27 0.00 42.35 3.32
516 517 4.368391 CAGTTGAACTGGCGAGCT 57.632 55.556 17.27 0.00 42.35 4.09
523 524 4.836125 ATGCTGTTTACCAGTTGAACTG 57.164 40.909 18.04 18.04 45.53 3.16
524 525 5.852282 AAATGCTGTTTACCAGTTGAACT 57.148 34.783 0.00 0.00 43.55 3.01
525 526 5.276820 GCAAAATGCTGTTTACCAGTTGAAC 60.277 40.000 0.00 0.00 43.55 3.18
526 527 4.808364 GCAAAATGCTGTTTACCAGTTGAA 59.192 37.500 0.00 0.00 43.55 2.69
527 528 4.367450 GCAAAATGCTGTTTACCAGTTGA 58.633 39.130 0.00 0.00 43.55 3.18
528 529 4.713854 GCAAAATGCTGTTTACCAGTTG 57.286 40.909 0.00 0.00 43.55 3.16
548 549 3.793144 CGCTCGGGTGCTTCAAGC 61.793 66.667 1.04 1.04 42.82 4.01
549 550 3.793144 GCGCTCGGGTGCTTCAAG 61.793 66.667 15.01 0.00 44.66 3.02
582 583 3.369451 GGAAAACTGTTGCGCTTGAAAAA 59.631 39.130 9.73 0.00 0.00 1.94
583 584 2.926838 GGAAAACTGTTGCGCTTGAAAA 59.073 40.909 9.73 0.00 0.00 2.29
584 585 2.535331 GGAAAACTGTTGCGCTTGAAA 58.465 42.857 9.73 0.00 0.00 2.69
585 586 1.532921 CGGAAAACTGTTGCGCTTGAA 60.533 47.619 9.73 0.00 0.00 2.69
586 587 0.028770 CGGAAAACTGTTGCGCTTGA 59.971 50.000 9.73 0.00 0.00 3.02
587 588 2.494550 CGGAAAACTGTTGCGCTTG 58.505 52.632 9.73 0.00 0.00 4.01
591 592 0.384725 CAGAGCGGAAAACTGTTGCG 60.385 55.000 0.00 0.00 36.32 4.85
592 593 0.663153 ACAGAGCGGAAAACTGTTGC 59.337 50.000 0.00 0.00 41.21 4.17
593 594 3.059597 CAGTACAGAGCGGAAAACTGTTG 60.060 47.826 0.00 0.00 43.27 3.33
594 595 3.131396 CAGTACAGAGCGGAAAACTGTT 58.869 45.455 0.00 0.00 43.27 3.16
595 596 2.102588 ACAGTACAGAGCGGAAAACTGT 59.897 45.455 10.22 10.22 45.06 3.55
596 597 2.755650 ACAGTACAGAGCGGAAAACTG 58.244 47.619 9.17 9.17 40.08 3.16
597 598 3.391049 GAACAGTACAGAGCGGAAAACT 58.609 45.455 0.00 0.00 0.00 2.66
598 599 2.155155 CGAACAGTACAGAGCGGAAAAC 59.845 50.000 0.00 0.00 0.00 2.43
599 600 2.400399 CGAACAGTACAGAGCGGAAAA 58.600 47.619 0.00 0.00 0.00 2.29
600 601 1.933500 GCGAACAGTACAGAGCGGAAA 60.934 52.381 0.00 0.00 0.00 3.13
601 602 0.388134 GCGAACAGTACAGAGCGGAA 60.388 55.000 0.00 0.00 0.00 4.30
602 603 1.211969 GCGAACAGTACAGAGCGGA 59.788 57.895 0.00 0.00 0.00 5.54
603 604 0.450583 TAGCGAACAGTACAGAGCGG 59.549 55.000 0.00 0.00 0.00 5.52
604 605 1.816370 CTAGCGAACAGTACAGAGCG 58.184 55.000 0.00 0.00 0.00 5.03
605 606 1.551145 GCTAGCGAACAGTACAGAGC 58.449 55.000 0.00 0.00 0.00 4.09
606 607 1.472878 TGGCTAGCGAACAGTACAGAG 59.527 52.381 9.00 0.00 0.00 3.35
607 608 1.201647 GTGGCTAGCGAACAGTACAGA 59.798 52.381 9.00 0.00 0.00 3.41
608 609 1.067846 TGTGGCTAGCGAACAGTACAG 60.068 52.381 15.67 0.00 0.00 2.74
609 610 0.963225 TGTGGCTAGCGAACAGTACA 59.037 50.000 15.67 6.69 0.00 2.90
610 611 1.927174 CATGTGGCTAGCGAACAGTAC 59.073 52.381 21.82 8.40 0.00 2.73
611 612 1.134818 CCATGTGGCTAGCGAACAGTA 60.135 52.381 21.82 4.62 0.00 2.74
612 613 0.391661 CCATGTGGCTAGCGAACAGT 60.392 55.000 21.82 11.08 0.00 3.55
613 614 1.091771 CCCATGTGGCTAGCGAACAG 61.092 60.000 21.82 15.15 0.00 3.16
614 615 1.078497 CCCATGTGGCTAGCGAACA 60.078 57.895 20.28 20.28 0.00 3.18
615 616 3.813596 CCCATGTGGCTAGCGAAC 58.186 61.111 9.00 10.33 0.00 3.95
627 628 4.738998 TGACTTGGCCGGCCCATG 62.739 66.667 41.75 30.95 44.89 3.66
628 629 4.431131 CTGACTTGGCCGGCCCAT 62.431 66.667 41.75 27.25 44.89 4.00
631 632 3.860930 TTTCCTGACTTGGCCGGCC 62.861 63.158 39.40 39.40 0.00 6.13
632 633 2.282180 TTTCCTGACTTGGCCGGC 60.282 61.111 21.18 21.18 0.00 6.13
633 634 2.335712 GCTTTCCTGACTTGGCCGG 61.336 63.158 0.00 0.00 0.00 6.13
634 635 2.335712 GGCTTTCCTGACTTGGCCG 61.336 63.158 0.00 0.00 0.00 6.13
635 636 1.228552 TGGCTTTCCTGACTTGGCC 60.229 57.895 0.00 0.00 39.93 5.36
636 637 1.527433 GGTGGCTTTCCTGACTTGGC 61.527 60.000 0.00 0.00 0.00 4.52
637 638 0.111253 AGGTGGCTTTCCTGACTTGG 59.889 55.000 0.00 0.00 33.62 3.61
638 639 3.733709 AGGTGGCTTTCCTGACTTG 57.266 52.632 0.00 0.00 33.62 3.16
644 645 2.281761 CGCACAGGTGGCTTTCCT 60.282 61.111 1.10 0.00 35.45 3.36
645 646 2.594592 ACGCACAGGTGGCTTTCC 60.595 61.111 1.10 0.00 0.00 3.13
646 647 2.639286 CACGCACAGGTGGCTTTC 59.361 61.111 1.10 0.00 34.27 2.62
647 648 3.595758 GCACGCACAGGTGGCTTT 61.596 61.111 1.10 0.00 38.36 3.51
680 681 2.176273 CCTATGTGCCGCTCTGTGC 61.176 63.158 0.00 0.00 38.57 4.57
681 682 0.105593 ATCCTATGTGCCGCTCTGTG 59.894 55.000 0.00 0.00 0.00 3.66
682 683 0.390860 GATCCTATGTGCCGCTCTGT 59.609 55.000 0.00 0.00 0.00 3.41
683 684 0.678395 AGATCCTATGTGCCGCTCTG 59.322 55.000 0.00 0.00 0.00 3.35
684 685 0.965439 GAGATCCTATGTGCCGCTCT 59.035 55.000 0.00 0.00 0.00 4.09
685 686 0.037790 GGAGATCCTATGTGCCGCTC 60.038 60.000 0.00 0.00 0.00 5.03
686 687 1.476007 GGGAGATCCTATGTGCCGCT 61.476 60.000 0.00 0.00 35.95 5.52
687 688 1.004440 GGGAGATCCTATGTGCCGC 60.004 63.158 0.00 0.00 35.95 6.53
688 689 1.674057 GGGGAGATCCTATGTGCCG 59.326 63.158 0.00 0.00 34.70 5.69
689 690 2.070639 GGGGGAGATCCTATGTGCC 58.929 63.158 0.00 0.00 35.95 5.01
721 722 0.806492 GAGACTTTCCATCCGACGGC 60.806 60.000 9.66 0.00 0.00 5.68
792 793 3.827898 CCTCGAGGAGGCGTGTCC 61.828 72.222 28.21 0.00 43.29 4.02
803 804 1.004185 CGCAGATTGATTTGCCTCGAG 60.004 52.381 5.13 5.13 37.00 4.04
814 815 1.202417 GGGATCGACTTCGCAGATTGA 60.202 52.381 0.00 0.00 39.60 2.57
825 826 2.128507 GCGGAGAAGGGGATCGACT 61.129 63.158 0.00 0.00 0.00 4.18
827 828 1.828660 GAGCGGAGAAGGGGATCGA 60.829 63.158 0.00 0.00 0.00 3.59
866 867 0.179108 GAGCGCCGGTAAATCAGACT 60.179 55.000 2.29 0.00 0.00 3.24
925 926 2.105821 ACTGAATCGGGGAAACAACTGA 59.894 45.455 0.00 0.00 0.00 3.41
958 967 1.506718 GTCTGATCTGTGCGTCCGA 59.493 57.895 0.00 0.00 0.00 4.55
1111 1120 2.047179 GGCAACGTGGTCCTCCTC 60.047 66.667 0.00 0.00 34.23 3.71
1141 1150 3.209812 CGGCTCCTGATCGTCGGA 61.210 66.667 0.00 0.00 0.00 4.55
1197 1206 4.514585 TGCCAAGGCCCGTTGTGT 62.515 61.111 8.89 0.00 41.09 3.72
1279 1288 0.727970 CGAGTCTGGACGTCGAAGAT 59.272 55.000 18.98 10.53 40.67 2.40
1321 1330 1.890894 CCGTAGCCATCCCTATCGG 59.109 63.158 0.00 0.00 0.00 4.18
1389 1405 1.507141 GGTGGAGCACGTGGAACTTG 61.507 60.000 18.88 0.00 39.39 3.16
1406 1422 2.203182 TTCGTGGTGGAGGAGGGT 59.797 61.111 0.00 0.00 0.00 4.34
1413 1429 1.068417 CACTTCGGTTCGTGGTGGA 59.932 57.895 0.00 0.00 31.67 4.02
1450 1466 2.512515 GCGCCATGACCACTCCTC 60.513 66.667 0.00 0.00 0.00 3.71
1634 1659 3.842925 TTGAACGGCAGCTCCCACC 62.843 63.158 0.00 0.00 0.00 4.61
1774 1799 2.437359 GCTGAGCTTCCACGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
1775 1800 3.889134 CTGCTGAGCTTCCACGCCA 62.889 63.158 5.83 0.00 0.00 5.69
1852 1877 3.470888 CCTGTGCCCCGTCCCTAG 61.471 72.222 0.00 0.00 0.00 3.02
1864 1889 2.743928 GCAGAACCGGCTCCTGTG 60.744 66.667 16.45 4.60 0.00 3.66
1927 1952 0.771127 CTGGGGGAGAAGGTTGTCAA 59.229 55.000 0.00 0.00 0.00 3.18
1940 1965 0.546598 GTTCCTGTGATACCTGGGGG 59.453 60.000 0.00 0.00 38.88 5.40
1950 1975 2.915659 AGGTCGCCGTTCCTGTGA 60.916 61.111 3.25 0.00 32.29 3.58
1987 2012 3.487372 GCAACTTAAAGGACTGAACCCT 58.513 45.455 0.00 0.00 35.03 4.34
1995 2020 2.287368 CGTGTTGGGCAACTTAAAGGAC 60.287 50.000 0.00 0.00 41.67 3.85
2017 2042 3.116174 AGAATCCAGAGTCTTTACCCCC 58.884 50.000 0.00 0.00 30.81 5.40
2145 2170 6.015095 CCCTCCTCTTAAAACTCAAGCAAAAT 60.015 38.462 0.00 0.00 0.00 1.82
2150 2175 4.020128 TCTCCCTCCTCTTAAAACTCAAGC 60.020 45.833 0.00 0.00 0.00 4.01
2151 2176 5.746990 TCTCCCTCCTCTTAAAACTCAAG 57.253 43.478 0.00 0.00 0.00 3.02
2152 2177 5.844516 TCTTCTCCCTCCTCTTAAAACTCAA 59.155 40.000 0.00 0.00 0.00 3.02
2161 2186 3.966665 CTGCTTATCTTCTCCCTCCTCTT 59.033 47.826 0.00 0.00 0.00 2.85
2169 2194 8.634444 TGAACTTATAGTCTGCTTATCTTCTCC 58.366 37.037 0.00 0.00 0.00 3.71
2177 2202 7.488150 CGTGACAATGAACTTATAGTCTGCTTA 59.512 37.037 0.00 0.00 0.00 3.09
2187 2212 2.420022 GCCTGCGTGACAATGAACTTAT 59.580 45.455 0.00 0.00 0.00 1.73
2200 2225 0.947244 AGTTTCTTGAAGCCTGCGTG 59.053 50.000 0.00 0.00 0.00 5.34
2236 2261 7.904558 TGGCAAACAATTATTATATGACCCA 57.095 32.000 0.00 0.00 0.00 4.51
2297 2322 1.806542 CACTGCCACCAACTGTATCAC 59.193 52.381 0.00 0.00 0.00 3.06
2298 2323 1.419762 ACACTGCCACCAACTGTATCA 59.580 47.619 0.00 0.00 0.00 2.15
2300 2325 2.158682 TCAACACTGCCACCAACTGTAT 60.159 45.455 0.00 0.00 0.00 2.29
2302 2327 0.034574 TCAACACTGCCACCAACTGT 60.035 50.000 0.00 0.00 0.00 3.55
2304 2329 0.034574 TGTCAACACTGCCACCAACT 60.035 50.000 0.00 0.00 0.00 3.16
2305 2330 1.032014 ATGTCAACACTGCCACCAAC 58.968 50.000 0.00 0.00 0.00 3.77
2307 2332 0.822944 CCATGTCAACACTGCCACCA 60.823 55.000 0.00 0.00 0.00 4.17
2309 2334 1.286880 GCCATGTCAACACTGCCAC 59.713 57.895 0.00 0.00 0.00 5.01
2311 2336 2.964978 GGCCATGTCAACACTGCC 59.035 61.111 0.00 8.49 38.26 4.85
2313 2338 1.915614 GAGCGGCCATGTCAACACTG 61.916 60.000 2.24 0.00 0.00 3.66
2315 2340 1.672356 AGAGCGGCCATGTCAACAC 60.672 57.895 2.24 0.00 0.00 3.32
2319 2344 2.410322 AAACCAGAGCGGCCATGTCA 62.410 55.000 2.24 0.00 39.03 3.58
2320 2345 1.675641 AAACCAGAGCGGCCATGTC 60.676 57.895 2.24 0.00 39.03 3.06
2323 2348 2.361610 CCAAACCAGAGCGGCCAT 60.362 61.111 2.24 0.00 39.03 4.40
2324 2349 3.551496 CTCCAAACCAGAGCGGCCA 62.551 63.158 2.24 0.00 39.03 5.36
2325 2350 2.747855 CTCCAAACCAGAGCGGCC 60.748 66.667 0.00 0.00 39.03 6.13
2326 2351 3.435186 GCTCCAAACCAGAGCGGC 61.435 66.667 0.00 0.00 46.58 6.53
2330 2355 1.071471 ACCACGCTCCAAACCAGAG 59.929 57.895 0.00 0.00 0.00 3.35
2332 2357 2.260869 CCACCACGCTCCAAACCAG 61.261 63.158 0.00 0.00 0.00 4.00
2333 2358 1.697082 TACCACCACGCTCCAAACCA 61.697 55.000 0.00 0.00 0.00 3.67
2335 2360 1.574702 GCTACCACCACGCTCCAAAC 61.575 60.000 0.00 0.00 0.00 2.93
2336 2361 1.302192 GCTACCACCACGCTCCAAA 60.302 57.895 0.00 0.00 0.00 3.28
2339 2364 0.248289 TAAAGCTACCACCACGCTCC 59.752 55.000 0.00 0.00 32.70 4.70
2340 2365 1.933853 CATAAAGCTACCACCACGCTC 59.066 52.381 0.00 0.00 32.70 5.03
2341 2366 1.278127 ACATAAAGCTACCACCACGCT 59.722 47.619 0.00 0.00 35.09 5.07
2342 2367 1.664151 GACATAAAGCTACCACCACGC 59.336 52.381 0.00 0.00 0.00 5.34
2343 2368 2.967362 TGACATAAAGCTACCACCACG 58.033 47.619 0.00 0.00 0.00 4.94
2344 2369 5.186198 AGAATGACATAAAGCTACCACCAC 58.814 41.667 0.00 0.00 0.00 4.16
2345 2370 5.045942 TGAGAATGACATAAAGCTACCACCA 60.046 40.000 0.00 0.00 0.00 4.17
2347 2372 6.371548 TGTTGAGAATGACATAAAGCTACCAC 59.628 38.462 0.00 0.00 0.00 4.16
2348 2373 6.472016 TGTTGAGAATGACATAAAGCTACCA 58.528 36.000 0.00 0.00 0.00 3.25
2350 2375 7.834068 TCTGTTGAGAATGACATAAAGCTAC 57.166 36.000 0.00 0.00 0.00 3.58
2352 2377 7.934855 ATTCTGTTGAGAATGACATAAAGCT 57.065 32.000 0.00 0.00 45.58 3.74
2364 2389 2.449464 CCATGGCCATTCTGTTGAGAA 58.551 47.619 17.92 0.00 42.53 2.87
2365 2390 1.341285 CCCATGGCCATTCTGTTGAGA 60.341 52.381 17.92 0.00 0.00 3.27
2366 2391 1.108776 CCCATGGCCATTCTGTTGAG 58.891 55.000 17.92 1.41 0.00 3.02
2367 2392 0.971959 GCCCATGGCCATTCTGTTGA 60.972 55.000 17.92 0.00 44.06 3.18
2368 2393 1.518774 GCCCATGGCCATTCTGTTG 59.481 57.895 17.92 4.92 44.06 3.33
2369 2394 4.039042 GCCCATGGCCATTCTGTT 57.961 55.556 17.92 0.00 44.06 3.16
2380 2405 0.323633 TCCACAACCTGATGCCCATG 60.324 55.000 0.00 0.00 0.00 3.66
2381 2406 0.632835 ATCCACAACCTGATGCCCAT 59.367 50.000 0.00 0.00 0.00 4.00
2382 2407 0.323633 CATCCACAACCTGATGCCCA 60.324 55.000 0.00 0.00 32.71 5.36
2383 2408 1.039233 CCATCCACAACCTGATGCCC 61.039 60.000 0.00 0.00 37.61 5.36
2384 2409 1.669999 GCCATCCACAACCTGATGCC 61.670 60.000 0.00 0.00 37.61 4.40
2385 2410 0.682209 AGCCATCCACAACCTGATGC 60.682 55.000 0.00 0.00 37.61 3.91
2386 2411 1.747355 GAAGCCATCCACAACCTGATG 59.253 52.381 0.00 0.00 38.45 3.07
2387 2412 1.679944 CGAAGCCATCCACAACCTGAT 60.680 52.381 0.00 0.00 0.00 2.90
2388 2413 0.321564 CGAAGCCATCCACAACCTGA 60.322 55.000 0.00 0.00 0.00 3.86
2389 2414 1.308069 CCGAAGCCATCCACAACCTG 61.308 60.000 0.00 0.00 0.00 4.00
2390 2415 1.002134 CCGAAGCCATCCACAACCT 60.002 57.895 0.00 0.00 0.00 3.50
2391 2416 2.700773 GCCGAAGCCATCCACAACC 61.701 63.158 0.00 0.00 0.00 3.77
2392 2417 1.926511 CTGCCGAAGCCATCCACAAC 61.927 60.000 0.00 0.00 38.69 3.32
2393 2418 1.675310 CTGCCGAAGCCATCCACAA 60.675 57.895 0.00 0.00 38.69 3.33
2394 2419 2.046023 CTGCCGAAGCCATCCACA 60.046 61.111 0.00 0.00 38.69 4.17
2395 2420 2.045926 ACTGCCGAAGCCATCCAC 60.046 61.111 0.00 0.00 38.69 4.02
2396 2421 2.046023 CACTGCCGAAGCCATCCA 60.046 61.111 0.00 0.00 38.69 3.41
2397 2422 2.109126 GTCACTGCCGAAGCCATCC 61.109 63.158 0.00 0.00 38.69 3.51
2398 2423 1.078848 AGTCACTGCCGAAGCCATC 60.079 57.895 0.00 0.00 38.69 3.51
2400 2425 2.343758 GAGTCACTGCCGAAGCCA 59.656 61.111 0.00 0.00 38.69 4.75
2402 2427 2.811317 CCGAGTCACTGCCGAAGC 60.811 66.667 0.00 0.00 40.48 3.86
2405 2430 1.740332 TTCAACCGAGTCACTGCCGA 61.740 55.000 0.00 0.00 0.00 5.54
2406 2431 0.670546 ATTCAACCGAGTCACTGCCG 60.671 55.000 0.00 0.00 0.00 5.69
2407 2432 0.798776 CATTCAACCGAGTCACTGCC 59.201 55.000 0.00 0.00 0.00 4.85
2412 2437 4.707934 TGGTATACTCATTCAACCGAGTCA 59.292 41.667 2.25 0.00 41.52 3.41
2413 2438 5.258456 TGGTATACTCATTCAACCGAGTC 57.742 43.478 2.25 0.00 41.52 3.36
2415 2440 6.090483 AGATGGTATACTCATTCAACCGAG 57.910 41.667 2.25 0.00 32.69 4.63
2416 2441 6.479972 AAGATGGTATACTCATTCAACCGA 57.520 37.500 2.25 0.00 32.69 4.69
2417 2442 5.402568 CGAAGATGGTATACTCATTCAACCG 59.597 44.000 2.25 3.27 32.69 4.44
2418 2443 5.696724 CCGAAGATGGTATACTCATTCAACC 59.303 44.000 2.25 0.00 0.00 3.77
2419 2444 6.201044 CACCGAAGATGGTATACTCATTCAAC 59.799 42.308 2.25 0.00 41.38 3.18
2420 2445 6.097696 TCACCGAAGATGGTATACTCATTCAA 59.902 38.462 2.25 0.00 41.38 2.69
2424 2449 5.833667 TCTTCACCGAAGATGGTATACTCAT 59.166 40.000 2.25 4.81 42.78 2.90
2425 2450 5.198207 TCTTCACCGAAGATGGTATACTCA 58.802 41.667 2.25 0.00 42.78 3.41
2426 2451 5.769484 TCTTCACCGAAGATGGTATACTC 57.231 43.478 2.25 0.00 42.78 2.59
2428 2453 5.290386 CCTTCTTCACCGAAGATGGTATAC 58.710 45.833 21.81 0.00 46.20 1.47
2429 2454 4.202223 GCCTTCTTCACCGAAGATGGTATA 60.202 45.833 26.68 6.85 46.20 1.47
2490 2721 4.202398 ACAGAAGCAGAAACAGATGAAGGA 60.202 41.667 0.00 0.00 0.00 3.36
2504 2735 4.940046 ACATGATCTAACCAACAGAAGCAG 59.060 41.667 0.00 0.00 0.00 4.24
2535 2777 9.781834 TCAGTTAAATCGGCACTTAATTATTTG 57.218 29.630 0.00 0.00 0.00 2.32
2551 2793 8.567948 TGAGAACAATTTGGACTCAGTTAAATC 58.432 33.333 17.48 0.00 32.24 2.17
2555 2797 7.873719 TTTGAGAACAATTTGGACTCAGTTA 57.126 32.000 19.23 9.25 36.02 2.24
2596 3293 5.351458 TGAATGTTCTGGTCATACAGATCG 58.649 41.667 0.00 0.00 46.07 3.69
2634 3334 1.478510 ACTGTAAGACGCCAGATCCAG 59.521 52.381 0.00 0.00 37.43 3.86
2644 3344 4.868067 AGTCTACAACCAACTGTAAGACG 58.132 43.478 0.00 0.00 36.33 4.18
2652 3352 6.229936 TCAACTACAAGTCTACAACCAACT 57.770 37.500 0.00 0.00 0.00 3.16
2656 3356 7.441458 AGAAACATCAACTACAAGTCTACAACC 59.559 37.037 0.00 0.00 0.00 3.77
2661 3361 7.497579 TGCAAAGAAACATCAACTACAAGTCTA 59.502 33.333 0.00 0.00 0.00 2.59
2662 3362 6.318648 TGCAAAGAAACATCAACTACAAGTCT 59.681 34.615 0.00 0.00 0.00 3.24
2663 3363 6.494842 TGCAAAGAAACATCAACTACAAGTC 58.505 36.000 0.00 0.00 0.00 3.01
2664 3364 6.449635 TGCAAAGAAACATCAACTACAAGT 57.550 33.333 0.00 0.00 0.00 3.16
2665 3365 6.303970 CGATGCAAAGAAACATCAACTACAAG 59.696 38.462 0.00 0.00 42.28 3.16
2666 3366 6.142139 CGATGCAAAGAAACATCAACTACAA 58.858 36.000 0.00 0.00 42.28 2.41
2667 3367 5.688823 CGATGCAAAGAAACATCAACTACA 58.311 37.500 0.00 0.00 42.28 2.74
2668 3368 4.554973 GCGATGCAAAGAAACATCAACTAC 59.445 41.667 0.00 0.00 42.28 2.73
2669 3369 4.379394 GGCGATGCAAAGAAACATCAACTA 60.379 41.667 0.00 0.00 42.28 2.24
2670 3370 3.568538 GCGATGCAAAGAAACATCAACT 58.431 40.909 0.00 0.00 42.28 3.16
2673 3373 1.885233 TGGCGATGCAAAGAAACATCA 59.115 42.857 0.00 0.00 42.28 3.07
2696 3396 4.080919 TGCTGCAGATTACAACTACAGGAT 60.081 41.667 20.43 0.00 31.61 3.24
2703 3403 5.909621 ATTGATTGCTGCAGATTACAACT 57.090 34.783 20.43 2.59 0.00 3.16
2732 3464 3.325135 GGCCAAGATACAGTAGCATACCT 59.675 47.826 0.00 0.00 44.47 3.08
2733 3465 3.071023 TGGCCAAGATACAGTAGCATACC 59.929 47.826 0.61 0.00 44.47 2.73
2799 3531 3.949754 ACCAATGATCAATGCCACACTAG 59.050 43.478 5.16 0.00 0.00 2.57
2800 3532 3.966979 ACCAATGATCAATGCCACACTA 58.033 40.909 5.16 0.00 0.00 2.74
2801 3533 2.811410 ACCAATGATCAATGCCACACT 58.189 42.857 5.16 0.00 0.00 3.55
2802 3534 3.255725 CAACCAATGATCAATGCCACAC 58.744 45.455 5.16 0.00 0.00 3.82
2803 3535 2.353903 GCAACCAATGATCAATGCCACA 60.354 45.455 5.16 0.00 0.00 4.17
2804 3536 2.093869 AGCAACCAATGATCAATGCCAC 60.094 45.455 5.16 0.00 34.44 5.01
2805 3537 2.181125 AGCAACCAATGATCAATGCCA 58.819 42.857 5.16 0.00 34.44 4.92
2806 3538 2.933906 CAAGCAACCAATGATCAATGCC 59.066 45.455 5.16 0.00 34.44 4.40
2807 3539 2.933906 CCAAGCAACCAATGATCAATGC 59.066 45.455 5.16 8.59 0.00 3.56
2808 3540 3.055675 ACCCAAGCAACCAATGATCAATG 60.056 43.478 0.00 0.45 0.00 2.82
2844 3578 5.221048 GCGTGCTCTTTCCCATTTTATATGT 60.221 40.000 0.00 0.00 0.00 2.29
2845 3579 5.215160 GCGTGCTCTTTCCCATTTTATATG 58.785 41.667 0.00 0.00 0.00 1.78
2846 3580 4.887071 TGCGTGCTCTTTCCCATTTTATAT 59.113 37.500 0.00 0.00 0.00 0.86
2847 3581 4.265893 TGCGTGCTCTTTCCCATTTTATA 58.734 39.130 0.00 0.00 0.00 0.98
2848 3582 3.088532 TGCGTGCTCTTTCCCATTTTAT 58.911 40.909 0.00 0.00 0.00 1.40
2849 3583 2.509569 TGCGTGCTCTTTCCCATTTTA 58.490 42.857 0.00 0.00 0.00 1.52
2853 3587 1.327303 TTTTGCGTGCTCTTTCCCAT 58.673 45.000 0.00 0.00 0.00 4.00
2855 3589 3.782889 ATATTTTGCGTGCTCTTTCCC 57.217 42.857 0.00 0.00 0.00 3.97
2864 3598 6.314018 ACATGTCAGTGTTATATTTTGCGTG 58.686 36.000 0.00 0.00 0.00 5.34
2866 3600 7.020602 TCAACATGTCAGTGTTATATTTTGCG 58.979 34.615 0.00 0.00 40.17 4.85
2925 3659 3.876274 TGGTTCTGTGCTCTGTATCTC 57.124 47.619 0.00 0.00 0.00 2.75
2957 3691 9.817809 GTAAAGGTCAATGTAGTTCAGATCATA 57.182 33.333 0.00 0.00 0.00 2.15
2965 3700 5.310451 TGTGGGTAAAGGTCAATGTAGTTC 58.690 41.667 0.00 0.00 0.00 3.01
2978 3713 1.956297 TGTGGACGTTGTGGGTAAAG 58.044 50.000 0.00 0.00 0.00 1.85
2981 3716 0.179051 GGTTGTGGACGTTGTGGGTA 60.179 55.000 0.00 0.00 0.00 3.69
2999 3734 6.071334 TGACACTCAGTATTTCTTAGTCCAGG 60.071 42.308 0.00 0.00 29.25 4.45
3012 3747 6.379703 AGTCTGCTAAGAATGACACTCAGTAT 59.620 38.462 0.00 0.00 33.05 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.